Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94342.t1 | XP_024633642.1 | 88.8 | 358 | 36 | 1 | 17 | 374 | 4 | 357 | 4.20E-173 | 617.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94342.t1 | A0A396IRE0 | 91.1 | 349 | 27 | 1 | 26 | 374 | 1 | 345 | 3.9e-173 | 617.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene94342 | 0.81757 | 3.08E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene94342 | 0.805217 | 1.49E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene94342 | 0.814508 | 1.49E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene94342 | 0.804097 | 2.54E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene94342 | 0.821907 | 3.15E-53 | -1.69E-46 |
| MS.gene050549 | MS.gene94342 | 0.813414 | 2.59E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene94342 | 0.808818 | 2.57E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene94342 | 0.830202 | 3.35E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene94342 | 0.805671 | 1.19E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene94342 | 0.804845 | 1.78E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene94342 | 0.825813 | 3.82E-54 | -1.69E-46 |
| MS.gene054467 | MS.gene94342 | 0.802352 | 5.84E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene94342 | 0.818925 | 1.52E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene94342 | 0.802878 | 4.55E-49 | -1.69E-46 |
| MS.gene054801 | MS.gene94342 | 0.811483 | 6.84E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene94342 | 0.811038 | 8.55E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene94342 | 0.813173 | 2.93E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene94342 | 0.802523 | 5.39E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene94342 | 0.802013 | 6.86E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene94342 | 0.804843 | 1.78E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene94342 | 0.817096 | 3.94E-52 | -1.69E-46 |
| MS.gene056952 | MS.gene94342 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene94342 | 0.806781 | 6.96E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene94342 | 0.814554 | 1.45E-51 | -1.69E-46 |
| MS.gene060137 | MS.gene94342 | -0.825193 | 5.36E-54 | -1.69E-46 |
| MS.gene060802 | MS.gene94342 | 0.807162 | 5.78E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene94342 | 0.810699 | 1.01E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94342.t1 | MTR_3g050500 | 68.835 | 369 | 109 | 2 | 1 | 367 | 368 | 732 | 1.43e-174 | 504 |
| MS.gene94342.t1 | MTR_3g051060 | 64.607 | 356 | 115 | 3 | 20 | 374 | 397 | 742 | 8.80e-163 | 474 |
| MS.gene94342.t1 | MTR_3g058570 | 55.696 | 316 | 129 | 5 | 61 | 371 | 80 | 389 | 3.51e-112 | 333 |
| MS.gene94342.t1 | MTR_5g085340 | 55.836 | 317 | 132 | 3 | 62 | 374 | 440 | 752 | 1.88e-107 | 332 |
| MS.gene94342.t1 | MTR_5g085350 | 56.369 | 314 | 131 | 3 | 63 | 374 | 422 | 731 | 2.37e-106 | 328 |
| MS.gene94342.t1 | MTR_5g085350 | 56.369 | 314 | 131 | 3 | 63 | 374 | 435 | 744 | 3.58e-106 | 328 |
| MS.gene94342.t1 | MTR_5g085360 | 44.745 | 333 | 147 | 5 | 66 | 365 | 406 | 734 | 1.18e-83 | 270 |
| MS.gene94342.t1 | MTR_2g020510 | 46.405 | 306 | 156 | 4 | 66 | 370 | 391 | 689 | 3.45e-79 | 256 |
| MS.gene94342.t1 | MTR_2g020450 | 44.375 | 320 | 169 | 4 | 51 | 370 | 381 | 691 | 7.48e-72 | 237 |
| MS.gene94342.t1 | MTR_2g020470 | 42.857 | 322 | 152 | 7 | 51 | 370 | 380 | 671 | 5.18e-70 | 232 |
| MS.gene94342.t1 | MTR_5g091220 | 36.789 | 299 | 174 | 8 | 68 | 362 | 316 | 603 | 4.33e-46 | 166 |
| MS.gene94342.t1 | MTR_2g438740 | 33.904 | 292 | 184 | 5 | 68 | 357 | 279 | 563 | 7.64e-45 | 162 |
| MS.gene94342.t1 | MTR_3g055310 | 35.764 | 288 | 170 | 8 | 68 | 351 | 60 | 336 | 2.05e-44 | 157 |
| MS.gene94342.t1 | MTR_3g055310 | 36.111 | 288 | 169 | 8 | 68 | 351 | 123 | 399 | 1.26e-43 | 156 |
| MS.gene94342.t1 | MTR_3g055310 | 35.517 | 290 | 172 | 8 | 66 | 351 | 173 | 451 | 4.64e-43 | 156 |
| MS.gene94342.t1 | MTR_3g055310 | 35.764 | 288 | 170 | 8 | 68 | 351 | 203 | 479 | 4.69e-43 | 156 |
| MS.gene94342.t1 | MTR_3g055310 | 35.764 | 288 | 170 | 8 | 68 | 351 | 201 | 477 | 6.70e-43 | 156 |
| MS.gene94342.t1 | MTR_3g055310 | 35.764 | 288 | 170 | 8 | 68 | 351 | 228 | 504 | 1.21e-42 | 155 |
| MS.gene94342.t1 | MTR_2g438440 | 32.353 | 306 | 191 | 5 | 68 | 367 | 399 | 694 | 2.09e-40 | 152 |
| MS.gene94342.t1 | MTR_2g438400 | 32.237 | 304 | 180 | 7 | 68 | 361 | 258 | 545 | 2.51e-40 | 150 |
| MS.gene94342.t1 | MTR_5g028190 | 30.117 | 342 | 218 | 5 | 20 | 360 | 210 | 531 | 5.17e-40 | 149 |
| MS.gene94342.t1 | MTR_5g028130 | 28.239 | 301 | 206 | 4 | 64 | 360 | 41 | 335 | 2.53e-38 | 140 |
| MS.gene94342.t1 | MTR_2g438700 | 30.464 | 302 | 203 | 5 | 68 | 367 | 402 | 698 | 2.63e-38 | 145 |
| MS.gene94342.t1 | MTR_2g438720 | 30.164 | 305 | 200 | 6 | 68 | 367 | 404 | 700 | 1.28e-37 | 144 |
| MS.gene94342.t1 | MTR_5g028450 | 31.847 | 314 | 198 | 7 | 66 | 374 | 2 | 304 | 1.58e-37 | 137 |
| MS.gene94342.t1 | MTR_3g455790 | 32.759 | 290 | 180 | 8 | 66 | 351 | 309 | 587 | 1.87e-36 | 139 |
| MS.gene94342.t1 | MTR_2g438760 | 31.164 | 292 | 191 | 6 | 71 | 361 | 280 | 562 | 3.59e-36 | 139 |
| MS.gene94342.t1 | MTR_2g017930 | 34.701 | 268 | 163 | 5 | 88 | 354 | 382 | 638 | 8.82e-36 | 138 |
| MS.gene94342.t1 | MTR_2g438640 | 31.373 | 306 | 188 | 9 | 68 | 364 | 404 | 696 | 2.65e-35 | 137 |
| MS.gene94342.t1 | MTR_5g028930 | 30.258 | 271 | 182 | 3 | 57 | 325 | 313 | 578 | 4.23e-35 | 136 |
| MS.gene94342.t1 | MTR_2g438640 | 33.193 | 238 | 147 | 7 | 132 | 364 | 440 | 670 | 1.00e-33 | 132 |
| MS.gene94342.t1 | MTR_3g452020 | 32.069 | 290 | 182 | 8 | 66 | 351 | 134 | 412 | 2.32e-32 | 126 |
| MS.gene94342.t1 | MTR_3g452020 | 32.069 | 290 | 182 | 8 | 66 | 351 | 310 | 588 | 7.29e-32 | 127 |
| MS.gene94342.t1 | MTR_6g017215 | 35.948 | 153 | 97 | 1 | 170 | 321 | 6 | 158 | 6.23e-28 | 110 |
| MS.gene94342.t1 | MTR_2g438640 | 33.668 | 199 | 123 | 5 | 170 | 364 | 400 | 593 | 2.82e-27 | 113 |
| MS.gene94342.t1 | MTR_5g028900 | 35.417 | 144 | 82 | 2 | 185 | 328 | 17 | 149 | 7.87e-22 | 91.3 |
| MS.gene94342.t1 | MTR_5g028690 | 31.928 | 166 | 112 | 1 | 164 | 328 | 35 | 200 | 2.04e-21 | 92.4 |
| MS.gene94342.t1 | MTR_5g028840 | 30.556 | 180 | 124 | 1 | 172 | 350 | 4 | 183 | 7.25e-19 | 84.3 |
| MS.gene94342.t1 | MTR_5g028110 | 29.442 | 197 | 103 | 5 | 172 | 360 | 4 | 172 | 5.43e-18 | 81.3 |
| MS.gene94342.t1 | MTR_2g438580 | 38.750 | 80 | 49 | 0 | 185 | 264 | 3 | 82 | 1.81e-15 | 71.2 |
| MS.gene94342.t1 | MTR_2g438470 | 35.043 | 117 | 74 | 1 | 130 | 246 | 384 | 498 | 4.54e-15 | 76.6 |
| MS.gene94342.t1 | MTR_1g113760 | 25.000 | 300 | 212 | 8 | 64 | 357 | 239 | 531 | 6.35e-14 | 73.6 |
| MS.gene94342.t1 | MTR_1g113730 | 24.522 | 314 | 211 | 10 | 37 | 339 | 17 | 315 | 9.58e-13 | 69.3 |
| MS.gene94342.t1 | MTR_1g113820 | 25.229 | 218 | 152 | 5 | 64 | 278 | 275 | 484 | 1.58e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94342.t1 | AT3G18670 | 30.601 | 366 | 238 | 9 | 5 | 361 | 226 | 584 | 3.49e-51 | 180 |
| MS.gene94342.t1 | AT3G18670 | 31.832 | 333 | 217 | 7 | 32 | 361 | 314 | 639 | 8.58e-50 | 177 |
| MS.gene94342.t1 | AT5G35810 | 32.026 | 306 | 197 | 5 | 59 | 358 | 29 | 329 | 1.65e-44 | 157 |
| MS.gene94342.t1 | AT5G04700 | 33.435 | 329 | 209 | 8 | 38 | 363 | 337 | 658 | 4.20e-43 | 159 |
| MS.gene94342.t1 | AT5G04690 | 34.043 | 235 | 147 | 3 | 131 | 363 | 386 | 614 | 2.37e-42 | 156 |
| MS.gene94342.t1 | AT5G04690 | 34.043 | 235 | 147 | 3 | 131 | 363 | 406 | 634 | 3.68e-42 | 156 |
| MS.gene94342.t1 | AT5G04690 | 34.043 | 235 | 147 | 3 | 131 | 363 | 420 | 648 | 4.48e-42 | 156 |
| MS.gene94342.t1 | AT3G54065 | 35.211 | 213 | 129 | 3 | 156 | 361 | 8 | 218 | 1.45e-38 | 138 |
| MS.gene94342.t1 | AT5G04730 | 29.714 | 350 | 222 | 9 | 25 | 363 | 255 | 591 | 6.25e-38 | 144 |
| MS.gene94342.t1 | AT5G04680 | 31.014 | 345 | 217 | 8 | 32 | 363 | 194 | 530 | 2.79e-36 | 139 |
| MS.gene94342.t1 | AT5G04680 | 31.014 | 345 | 217 | 8 | 32 | 363 | 303 | 639 | 6.43e-36 | 139 |
| MS.gene94342.t1 | AT5G04680 | 30.725 | 345 | 218 | 7 | 32 | 363 | 317 | 653 | 6.72e-36 | 139 |
| MS.gene94342.t1 | AT5G04680 | 31.014 | 345 | 217 | 8 | 32 | 363 | 346 | 682 | 7.36e-36 | 139 |
Find 75 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTAGCAGCAAAGAAAA+AGG | 0.251172 | 3.2:+43475473 | MS.gene94342:CDS |
| TGCTTGCCTCTCACATTCTA+TGG | 0.260173 | 3.2:+43476698 | MS.gene94342:CDS |
| AACCCCAGGTGAAATCTTTA+AGG | 0.271604 | 3.2:+43476250 | MS.gene94342:CDS |
| ATGTTCATTTCTTTCATTGC+TGG | 0.288747 | 3.2:+43476608 | MS.gene94342:CDS |
| AAGTGGCGTAGTTGAAATTA+TGG | 0.312736 | 3.2:+43475377 | MS.gene94342:CDS |
| CTTCTTTGTTGCTTCTATGA+TGG | 0.336687 | 3.2:-43476223 | None:intergenic |
| CCTGTTTCCTGATTGCCTCC+AGG | 0.337339 | 3.2:-43476389 | None:intergenic |
| GATCAAGATATAACGGAAAC+TGG | 0.338760 | 3.2:-43476727 | None:intergenic |
| TTCAAGTGCACGCATGATTT+CGG | 0.351916 | 3.2:-43475541 | None:intergenic |
| CATTGTCAGAGTTAGTTTCA+TGG | 0.358694 | 3.2:-43475584 | None:intergenic |
| AACACTGCTTGGAGGATATC+TGG | 0.361364 | 3.2:+43475768 | MS.gene94342:CDS |
| TTTGCTGTATCTTCATTAGT+TGG | 0.362700 | 3.2:+43476449 | MS.gene94342:CDS |
| CCTGGAGGCAATCAGGAAAC+AGG | 0.362749 | 3.2:+43476389 | MS.gene94342:CDS |
| CGCAAGTTGTTGAGGGGTTG+TGG | 0.380881 | 3.2:+43475643 | MS.gene94342:CDS |
| TGTTGCTTCTATGATGGTAA+TGG | 0.392154 | 3.2:-43476217 | None:intergenic |
| AGCTTAACACCCTTGATACT+TGG | 0.393569 | 3.2:-43476782 | None:intergenic |
| AAATGCTGCTAAGTGTAAAA+TGG | 0.394125 | 3.2:-43475727 | None:intergenic |
| CTGTTTCCTGATTGCCTCCA+GGG | 0.400780 | 3.2:-43476388 | None:intergenic |
| CTTATTACTTGTAGCAATGA+AGG | 0.409492 | 3.2:+43475440 | MS.gene94342:CDS |
| TCCTCCTTAAAGATTTCACC+TGG | 0.410908 | 3.2:-43476254 | None:intergenic |
| GTTGTGGAAGAGGCTTTCTA+TGG | 0.418288 | 3.2:+43475659 | MS.gene94342:CDS |
| CAACGTCCCTGGAGGCAATC+AGG | 0.419195 | 3.2:+43476382 | MS.gene94342:CDS |
| GGCGTCTCCTTTGCTACATC+AGG | 0.434602 | 3.2:+43476359 | MS.gene94342:CDS |
| TTGTTGAGGGGTTGTGGAAG+AGG | 0.439045 | 3.2:+43475649 | MS.gene94342:CDS |
| CTTCTATGATGGTAATGGTC+TGG | 0.452731 | 3.2:-43476212 | None:intergenic |
| ACAGGGAAACCAACATTTGA+AGG | 0.475667 | 3.2:+43476407 | MS.gene94342:CDS |
| GAAGGGCAACCAGCATTTGA+AGG | 0.483339 | 3.2:+43476425 | MS.gene94342:CDS |
| TTCTAGAAGTGAGTATAGAA+AGG | 0.492529 | 3.2:-43476505 | None:intergenic |
| ATAGAACAAGATACCACTCT+TGG | 0.493665 | 3.2:-43476660 | None:intergenic |
| CTCCTTAAAGATTTCACCTG+GGG | 0.497170 | 3.2:-43476252 | None:intergenic |
| GCTACATCAGGCAACGTCCC+TGG | 0.497506 | 3.2:+43476371 | MS.gene94342:CDS |
| GTTGTAGCAGCACTCGTCGC+AGG | 0.505518 | 3.2:+43476338 | MS.gene94342:CDS |
| GTAAAGGAATCTGACAAGAA+AGG | 0.508579 | 3.2:+43475417 | MS.gene94342:CDS |
| GGTGCCACCACCAAGTATCA+AGG | 0.511463 | 3.2:+43476772 | MS.gene94342:CDS |
| TTGAGAAGATCAAGATATAA+CGG | 0.512499 | 3.2:-43476734 | None:intergenic |
| TTGATCTTCTCAAAGTTACA+TGG | 0.512948 | 3.2:+43476744 | MS.gene94342:CDS |
| AGAAATGAACATGGCAACAA+TGG | 0.515982 | 3.2:-43476597 | None:intergenic |
| ACAGCAAATCCTTCAAATGC+TGG | 0.519658 | 3.2:-43476434 | None:intergenic |
| AGAGCTTAACTCAAAAGTAA+AGG | 0.520218 | 3.2:+43475401 | MS.gene94342:CDS |
| TTAACACCCTTGATACTTGG+TGG | 0.523933 | 3.2:-43476779 | None:intergenic |
| GCTGGTTGCCCTTCAAATGT+TGG | 0.529783 | 3.2:-43476416 | None:intergenic |
| CACAACCCCTCAACAACTTG+CGG | 0.534637 | 3.2:-43475642 | None:intergenic |
| TTGTTGATTTATGCTCTGAA+AGG | 0.537416 | 3.2:-43475685 | None:intergenic |
| AGACAACCGCAAGTTGTTGA+GGG | 0.537910 | 3.2:+43475636 | MS.gene94342:CDS |
| CACACAGGGAAAACACTGCT+TGG | 0.538738 | 3.2:+43475757 | MS.gene94342:CDS |
| GAATGTGAGAGGCAAGCAAA+TGG | 0.539059 | 3.2:-43476693 | None:intergenic |
| CATCATAGAAGCAACAAAGA+AGG | 0.547820 | 3.2:+43476224 | MS.gene94342:CDS |
| TAGACAACCGCAAGTTGTTG+AGG | 0.558579 | 3.2:+43475635 | MS.gene94342:CDS |
| GATGTCCCACATCATTTGCA+TGG | 0.565189 | 3.2:-43475796 | None:intergenic |
| CCTCCTTAAAGATTTCACCT+GGG | 0.568420 | 3.2:-43476253 | None:intergenic |
| ACAGGGAAAACACTGCTTGG+AGG | 0.570765 | 3.2:+43475760 | MS.gene94342:CDS |
| GAAGGAAATCAAGAAATGAA+AGG | 0.582757 | 3.2:+43475306 | None:intergenic |
| TATTTGCGTGCAGCAAAACA+TGG | 0.589012 | 3.2:+43475513 | MS.gene94342:CDS |
| GACGTTGCCTGATGTAGCAA+AGG | 0.589787 | 3.2:-43476366 | None:intergenic |
| ACACCCTTGATACTTGGTGG+TGG | 0.591476 | 3.2:-43476776 | None:intergenic |
| GTGGGACATCAAGTGGTACA+AGG | 0.594742 | 3.2:+43475809 | MS.gene94342:CDS |
| TCAAGGGTGTTAAGCTGTAG+AGG | 0.595960 | 3.2:+43476789 | MS.gene94342:CDS |
| ACAGATAAATATTCCAAGAG+TGG | 0.603652 | 3.2:+43476647 | MS.gene94342:CDS |
| CTGGAGGCAATCAGGAAACA+GGG | 0.606342 | 3.2:+43476390 | MS.gene94342:CDS |
| CAGGGAAACCAACATTTGAA+GGG | 0.612015 | 3.2:+43476408 | MS.gene94342:CDS |
| GTGCGGCCATGCAAATGATG+TGG | 0.618816 | 3.2:+43475790 | MS.gene94342:CDS |
| CAGCATTTACATCAACACAC+AGG | 0.621383 | 3.2:+43475742 | MS.gene94342:CDS |
| TCTCAAAGTTACATGGAGGA+AGG | 0.625653 | 3.2:+43476751 | MS.gene94342:CDS |
| GTGCCACCACCAAGTATCAA+GGG | 0.630567 | 3.2:+43476773 | MS.gene94342:CDS |
| TTCTAGATAAAAGCATTGAG+TGG | 0.638047 | 3.2:+43476288 | MS.gene94342:CDS |
| GACAACCGCAAGTTGTTGAG+GGG | 0.642150 | 3.2:+43475637 | MS.gene94342:CDS |
| CCCAGGTGAAATCTTTAAGG+AGG | 0.655968 | 3.2:+43476253 | MS.gene94342:CDS |
| AGCATTTACATCAACACACA+GGG | 0.661860 | 3.2:+43475743 | MS.gene94342:CDS |
| TGCGGCCATGCAAATGATGT+GGG | 0.663238 | 3.2:+43475791 | MS.gene94342:CDS |
| ACAACTCCATAGAATGTGAG+AGG | 0.673388 | 3.2:-43476704 | None:intergenic |
| ATCTTCTCAAAGTTACATGG+AGG | 0.681695 | 3.2:+43476747 | MS.gene94342:CDS |
| AAATGATGTGGGACATCAAG+TGG | 0.684085 | 3.2:+43475802 | MS.gene94342:CDS |
| TGCTTGGAGGATATCTGGTG+CGG | 0.701964 | 3.2:+43475773 | MS.gene94342:CDS |
| AGCAATGAAAGAAATGAACA+TGG | 0.705741 | 3.2:-43476606 | None:intergenic |
| ACATCAGGCAACGTCCCTGG+AGG | 0.708851 | 3.2:+43476374 | MS.gene94342:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATATAAATGTTTTCT+GGG | - | chr3.2:43476068-43476087 | None:intergenic | 10.0% |
| !!! | TAAAAAATATAAATGTTTTC+TGG | - | chr3.2:43476069-43476088 | None:intergenic | 10.0% |
| !! | TAATTTATCATTTCAACATA+TGG | + | chr3.2:43475935-43475954 | MS.gene94342:intron | 15.0% |
| !!! | ATAGATTTTTTTTAAGAAGT+AGG | - | chr3.2:43476120-43476139 | None:intergenic | 15.0% |
| !! | AAAAAAGAGACTATAAAACT+AGG | + | chr3.2:43475967-43475986 | MS.gene94342:intron | 20.0% |
| !!! | AGTCTTTTAATATACTATAC+AGG | - | chr3.2:43476188-43476207 | None:intergenic | 20.0% |
| !!! | GAGATCATATGATATTTTTA+AGG | + | chr3.2:43475876-43475895 | MS.gene94342:intron | 20.0% |
| !!! | TGAAAAAGATAAGACATTTT+TGG | + | chr3.2:43475344-43475363 | MS.gene94342:CDS | 20.0% |
| ! | AATCCAAAAAACTAAATGGA+AGG | - | chr3.2:43476045-43476064 | None:intergenic | 25.0% |
| ! | ATGAAAGGTTCAACAAAAAA+TGG | + | chr3.2:43475321-43475340 | MS.gene94342:CDS | 25.0% |
| ! | ATTAAAAGTGGTTGTAAAGT+AGG | + | chr3.2:43475995-43476014 | MS.gene94342:intron | 25.0% |
| ! | TTGAGAAGATCAAGATATAA+CGG | - | chr3.2:43476737-43476756 | None:intergenic | 25.0% |
| !!! | CTGTTTTAACTATATGTGAA+TGG | + | chr3.2:43476161-43476180 | MS.gene94342:intron | 25.0% |
| AAATGCTGCTAAGTGTAAAA+TGG | - | chr3.2:43475730-43475749 | None:intergenic | 30.0% | |
| ACAGATAAATATTCCAAGAG+TGG | + | chr3.2:43476647-43476666 | MS.gene94342:CDS | 30.0% | |
| AGAATTAGCAGCAAAGAAAA+AGG | + | chr3.2:43475473-43475492 | MS.gene94342:CDS | 30.0% | |
| AGAGCTTAACTCAAAAGTAA+AGG | + | chr3.2:43475401-43475420 | MS.gene94342:CDS | 30.0% | |
| AGCAATGAAAGAAATGAACA+TGG | - | chr3.2:43476609-43476628 | None:intergenic | 30.0% | |
| ATGTTCATTTCTTTCATTGC+TGG | + | chr3.2:43476608-43476627 | MS.gene94342:CDS | 30.0% | |
| CTTATTACTTGTAGCAATGA+AGG | + | chr3.2:43475440-43475459 | MS.gene94342:CDS | 30.0% | |
| GAATTAGCAGCAAAGAAAAA+GGG | + | chr3.2:43475474-43475493 | MS.gene94342:CDS | 30.0% | |
| TGGGAATCCAAAAAACTAAA+TGG | - | chr3.2:43476049-43476068 | None:intergenic | 30.0% | |
| TTGATCTTCTCAAAGTTACA+TGG | + | chr3.2:43476744-43476763 | MS.gene94342:CDS | 30.0% | |
| ! | TTCTAGAAGTGAGTATAGAA+AGG | - | chr3.2:43476508-43476527 | None:intergenic | 30.0% |
| ! | TTTGCTGTATCTTCATTAGT+TGG | + | chr3.2:43476449-43476468 | MS.gene94342:CDS | 30.0% |
| !! | TTCTAGATAAAAGCATTGAG+TGG | + | chr3.2:43476288-43476307 | MS.gene94342:CDS | 30.0% |
| !! | TTGTTGATTTATGCTCTGAA+AGG | - | chr3.2:43475688-43475707 | None:intergenic | 30.0% |
| AAGCCAAAAAGAAGCTTCAT+TGG | - | chr3.2:43476560-43476579 | None:intergenic | 35.0% | |
| AAGTGGCGTAGTTGAAATTA+TGG | + | chr3.2:43475377-43475396 | MS.gene94342:CDS | 35.0% | |
| AGAAATGAACATGGCAACAA+TGG | - | chr3.2:43476600-43476619 | None:intergenic | 35.0% | |
| AGCATTTACATCAACACACA+GGG | + | chr3.2:43475743-43475762 | MS.gene94342:CDS | 35.0% | |
| ATAGAACAAGATACCACTCT+TGG | - | chr3.2:43476663-43476682 | None:intergenic | 35.0% | |
| ATCTTCTCAAAGTTACATGG+AGG | + | chr3.2:43476747-43476766 | MS.gene94342:CDS | 35.0% | |
| CATCATAGAAGCAACAAAGA+AGG | + | chr3.2:43476224-43476243 | MS.gene94342:CDS | 35.0% | |
| GTAAAGGAATCTGACAAGAA+AGG | + | chr3.2:43475417-43475436 | MS.gene94342:CDS | 35.0% | |
| ! | AACTAGGCTCTGATTAAAAG+TGG | + | chr3.2:43475983-43476002 | MS.gene94342:intron | 35.0% |
| ! | CATTGTCAGAGTTAGTTTCA+TGG | - | chr3.2:43475587-43475606 | None:intergenic | 35.0% |
| ! | CTTCTTTGTTGCTTCTATGA+TGG | - | chr3.2:43476226-43476245 | None:intergenic | 35.0% |
| ! | GATCAAGATATAACGGAAAC+TGG | - | chr3.2:43476730-43476749 | None:intergenic | 35.0% |
| ! | TGTTGCTTCTATGATGGTAA+TGG | - | chr3.2:43476220-43476239 | None:intergenic | 35.0% |
| ! | TTGCCAATGAAGCTTCTTTT+TGG | + | chr3.2:43476554-43476573 | MS.gene94342:CDS | 35.0% |
| !!! | GCTCCTTCCATTTAGTTTTT+TGG | + | chr3.2:43476039-43476058 | MS.gene94342:intron | 35.0% |
| AAATGATGTGGGACATCAAG+TGG | + | chr3.2:43475802-43475821 | MS.gene94342:CDS | 40.0% | |
| AACAAAGAAGGAAAAACCCC+AGG | + | chr3.2:43476236-43476255 | MS.gene94342:CDS | 40.0% | |
| AACCCCAGGTGAAATCTTTA+AGG | + | chr3.2:43476250-43476269 | MS.gene94342:CDS | 40.0% | |
| ACAACTCCATAGAATGTGAG+AGG | - | chr3.2:43476707-43476726 | None:intergenic | 40.0% | |
| ACAGCAAATCCTTCAAATGC+TGG | - | chr3.2:43476437-43476456 | None:intergenic | 40.0% | |
| ACAGGGAAACCAACATTTGA+AGG | + | chr3.2:43476407-43476426 | MS.gene94342:CDS | 40.0% | |
| AGCTTAACACCCTTGATACT+TGG | - | chr3.2:43476785-43476804 | None:intergenic | 40.0% | |
| CAGCATTTACATCAACACAC+AGG | + | chr3.2:43475742-43475761 | MS.gene94342:CDS | 40.0% | |
| CAGGGAAACCAACATTTGAA+GGG | + | chr3.2:43476408-43476427 | MS.gene94342:CDS | 40.0% | |
| CCTCCTTAAAGATTTCACCT+GGG | - | chr3.2:43476256-43476275 | None:intergenic | 40.0% | |
| CTCCTTAAAGATTTCACCTG+GGG | - | chr3.2:43476255-43476274 | None:intergenic | 40.0% | |
| TATTTGCGTGCAGCAAAACA+TGG | + | chr3.2:43475513-43475532 | MS.gene94342:CDS | 40.0% | |
| TCCTCCTTAAAGATTTCACC+TGG | - | chr3.2:43476257-43476276 | None:intergenic | 40.0% | |
| TCTCAAAGTTACATGGAGGA+AGG | + | chr3.2:43476751-43476770 | MS.gene94342:CDS | 40.0% | |
| TTAACACCCTTGATACTTGG+TGG | - | chr3.2:43476782-43476801 | None:intergenic | 40.0% | |
| TTCAAGTGCACGCATGATTT+CGG | - | chr3.2:43475544-43475563 | None:intergenic | 40.0% | |
| !! | CTTCTATGATGGTAATGGTC+TGG | - | chr3.2:43476215-43476234 | None:intergenic | 40.0% |
| !! | TTTTTGGCAGTAGCGAAAAG+TGG | + | chr3.2:43475360-43475379 | MS.gene94342:CDS | 40.0% |
| AACACTGCTTGGAGGATATC+TGG | + | chr3.2:43475768-43475787 | MS.gene94342:CDS | 45.0% | |
| AGACAACCGCAAGTTGTTGA+GGG | + | chr3.2:43475636-43475655 | MS.gene94342:CDS | 45.0% | |
| GAATGTGAGAGGCAAGCAAA+TGG | - | chr3.2:43476696-43476715 | None:intergenic | 45.0% | |
| GATGTCCCACATCATTTGCA+TGG | - | chr3.2:43475799-43475818 | None:intergenic | 45.0% | |
| GTTGTGGAAGAGGCTTTCTA+TGG | + | chr3.2:43475659-43475678 | MS.gene94342:CDS | 45.0% | |
| TAGACAACCGCAAGTTGTTG+AGG | + | chr3.2:43475635-43475654 | MS.gene94342:CDS | 45.0% | |
| TGCTTGCCTCTCACATTCTA+TGG | + | chr3.2:43476698-43476717 | MS.gene94342:CDS | 45.0% | |
| ! | CCCAGGTGAAATCTTTAAGG+AGG | + | chr3.2:43476253-43476272 | MS.gene94342:CDS | 45.0% |
| ACAGGGAAAACACTGCTTGG+AGG | + | chr3.2:43475760-43475779 | MS.gene94342:CDS | 50.0% | |
| CACAACCCCTCAACAACTTG+CGG | - | chr3.2:43475645-43475664 | None:intergenic | 50.0% | |
| CACACAGGGAAAACACTGCT+TGG | + | chr3.2:43475757-43475776 | MS.gene94342:CDS | 50.0% | |
| CTGGAGGCAATCAGGAAACA+GGG | + | chr3.2:43476390-43476409 | MS.gene94342:CDS | 50.0% | |
| CTGTTTCCTGATTGCCTCCA+GGG | - | chr3.2:43476391-43476410 | None:intergenic | 50.0% | |
| GAAGGGCAACCAGCATTTGA+AGG | + | chr3.2:43476425-43476444 | MS.gene94342:CDS | 50.0% | |
| GACAACCGCAAGTTGTTGAG+GGG | + | chr3.2:43475637-43475656 | MS.gene94342:CDS | 50.0% | |
| GACGTTGCCTGATGTAGCAA+AGG | - | chr3.2:43476369-43476388 | None:intergenic | 50.0% | |
| GCTGGTTGCCCTTCAAATGT+TGG | - | chr3.2:43476419-43476438 | None:intergenic | 50.0% | |
| GTGCCACCACCAAGTATCAA+GGG | + | chr3.2:43476773-43476792 | MS.gene94342:CDS | 50.0% | |
| GTGGGACATCAAGTGGTACA+AGG | + | chr3.2:43475809-43475828 | MS.gene94342:CDS | 50.0% | |
| TGCGGCCATGCAAATGATGT+GGG | + | chr3.2:43475791-43475810 | MS.gene94342:CDS | 50.0% | |
| TGCTTGGAGGATATCTGGTG+CGG | + | chr3.2:43475773-43475792 | MS.gene94342:CDS | 50.0% | |
| TTGTTGAGGGGTTGTGGAAG+AGG | + | chr3.2:43475649-43475668 | MS.gene94342:CDS | 50.0% | |
| ! | ACACCCTTGATACTTGGTGG+TGG | - | chr3.2:43476779-43476798 | None:intergenic | 50.0% |
| CCTGGAGGCAATCAGGAAAC+AGG | + | chr3.2:43476389-43476408 | MS.gene94342:CDS | 55.0% | |
| CCTGTTTCCTGATTGCCTCC+AGG | - | chr3.2:43476392-43476411 | None:intergenic | 55.0% | |
| CGCAAGTTGTTGAGGGGTTG+TGG | + | chr3.2:43475643-43475662 | MS.gene94342:CDS | 55.0% | |
| GGCGTCTCCTTTGCTACATC+AGG | + | chr3.2:43476359-43476378 | MS.gene94342:CDS | 55.0% | |
| GTGCGGCCATGCAAATGATG+TGG | + | chr3.2:43475790-43475809 | MS.gene94342:CDS | 55.0% | |
| ! | GGTGCCACCACCAAGTATCA+AGG | + | chr3.2:43476772-43476791 | MS.gene94342:CDS | 55.0% |
| ACATCAGGCAACGTCCCTGG+AGG | + | chr3.2:43476374-43476393 | MS.gene94342:CDS | 60.0% | |
| CAACGTCCCTGGAGGCAATC+AGG | + | chr3.2:43476382-43476401 | MS.gene94342:CDS | 60.0% | |
| GCTACATCAGGCAACGTCCC+TGG | + | chr3.2:43476371-43476390 | MS.gene94342:CDS | 60.0% | |
| GTTGTAGCAGCACTCGTCGC+AGG | + | chr3.2:43476338-43476357 | MS.gene94342:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 43475321 | 43476808 | 43475321 | ID=MS.gene94342 |
| chr3.2 | mRNA | 43475321 | 43476808 | 43475321 | ID=MS.gene94342.t1;Parent=MS.gene94342 |
| chr3.2 | exon | 43475321 | 43475830 | 43475321 | ID=MS.gene94342.t1.exon1;Parent=MS.gene94342.t1 |
| chr3.2 | CDS | 43475321 | 43475830 | 43475321 | ID=cds.MS.gene94342.t1;Parent=MS.gene94342.t1 |
| chr3.2 | exon | 43476194 | 43476808 | 43476194 | ID=MS.gene94342.t1.exon2;Parent=MS.gene94342.t1 |
| chr3.2 | CDS | 43476194 | 43476808 | 43476194 | ID=cds.MS.gene94342.t1;Parent=MS.gene94342.t1 |
| Gene Sequence |
| Protein sequence |
