Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05062.t1 | RHN68031.1 | 88.9 | 677 | 26 | 1 | 1 | 628 | 1 | 677 | 0.00E+00 | 1182.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05062.t1 | Q9SHY2 | 71.6 | 654 | 134 | 3 | 26 | 628 | 22 | 674 | 2.5e-272 | 939.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05062.t1 | A0A396ITK6 | 88.9 | 677 | 26 | 1 | 1 | 628 | 1 | 677 | 0.0e+00 | 1182.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05216 | MS.gene05062 | PPI |
| MS.gene05062 | MS.gene57831 | PPI |
| MS.gene05062 | MS.gene37726 | PPI |
| MS.gene45566 | MS.gene05062 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05062.t1 | MTR_3g063520 | 88.626 | 677 | 28 | 1 | 1 | 628 | 1 | 677 | 0.0 | 1120 |
| MS.gene05062.t1 | MTR_5g091600 | 82.622 | 679 | 57 | 3 | 1 | 628 | 1 | 669 | 0.0 | 1092 |
| MS.gene05062.t1 | MTR_3g063490 | 81.113 | 683 | 74 | 2 | 1 | 628 | 1 | 683 | 0.0 | 1086 |
| MS.gene05062.t1 | MTR_6g077870 | 68.049 | 651 | 159 | 4 | 26 | 628 | 50 | 699 | 0.0 | 892 |
| MS.gene05062.t1 | MTR_6g077870 | 72.817 | 504 | 134 | 3 | 127 | 628 | 36 | 538 | 0.0 | 759 |
| MS.gene05062.t1 | MTR_3g092090 | 52.049 | 659 | 257 | 5 | 20 | 626 | 12 | 663 | 0.0 | 687 |
| MS.gene05062.t1 | MTR_7g028250 | 53.023 | 645 | 240 | 6 | 39 | 626 | 35 | 673 | 0.0 | 686 |
| MS.gene05062.t1 | MTR_3g092090 | 51.852 | 648 | 253 | 5 | 20 | 615 | 12 | 652 | 0.0 | 671 |
| MS.gene05062.t1 | MTR_1g007580 | 48.737 | 673 | 277 | 7 | 19 | 628 | 4 | 671 | 0.0 | 651 |
| MS.gene05062.t1 | MTR_0312s0020 | 48.109 | 661 | 285 | 5 | 20 | 628 | 17 | 671 | 0.0 | 645 |
| MS.gene05062.t1 | MTR_1g007540 | 48.109 | 661 | 285 | 5 | 20 | 628 | 17 | 671 | 0.0 | 645 |
| MS.gene05062.t1 | MTR_1g077840 | 47.655 | 661 | 288 | 5 | 20 | 628 | 25 | 679 | 0.0 | 641 |
| MS.gene05062.t1 | MTR_5g091615 | 81.977 | 172 | 28 | 1 | 457 | 628 | 41 | 209 | 2.62e-86 | 271 |
| MS.gene05062.t1 | MTR_1626s0010 | 51.261 | 238 | 113 | 1 | 168 | 405 | 1 | 235 | 5.54e-82 | 258 |
| MS.gene05062.t1 | MTR_0312s0050 | 48.780 | 123 | 52 | 3 | 16 | 127 | 1 | 123 | 2.87e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05062.t1 | AT1G65730 | 71.320 | 659 | 135 | 4 | 21 | 628 | 19 | 674 | 0.0 | 956 |
| MS.gene05062.t1 | AT3G17650 | 67.431 | 654 | 159 | 3 | 29 | 628 | 46 | 699 | 0.0 | 861 |
| MS.gene05062.t1 | AT3G17650 | 67.431 | 654 | 159 | 3 | 29 | 628 | 46 | 699 | 0.0 | 861 |
| MS.gene05062.t1 | AT1G48370 | 66.565 | 655 | 164 | 2 | 29 | 628 | 55 | 709 | 0.0 | 849 |
| MS.gene05062.t1 | AT1G48370 | 70.784 | 510 | 141 | 1 | 127 | 628 | 37 | 546 | 0.0 | 718 |
| MS.gene05062.t1 | AT3G27020 | 52.950 | 661 | 253 | 6 | 22 | 626 | 12 | 670 | 0.0 | 697 |
| MS.gene05062.t1 | AT5G53550 | 51.857 | 673 | 262 | 6 | 8 | 627 | 6 | 669 | 0.0 | 682 |
| MS.gene05062.t1 | AT5G53550 | 51.857 | 673 | 262 | 6 | 8 | 627 | 6 | 669 | 0.0 | 682 |
| MS.gene05062.t1 | AT5G53550 | 51.857 | 673 | 262 | 6 | 8 | 627 | 6 | 669 | 0.0 | 682 |
| MS.gene05062.t1 | AT5G53550 | 51.857 | 673 | 262 | 6 | 8 | 627 | 6 | 669 | 0.0 | 682 |
| MS.gene05062.t1 | AT5G53550 | 51.857 | 673 | 262 | 6 | 8 | 627 | 6 | 669 | 0.0 | 682 |
| MS.gene05062.t1 | AT5G24380 | 49.924 | 661 | 268 | 5 | 22 | 626 | 7 | 660 | 0.0 | 668 |
| MS.gene05062.t1 | AT5G41000 | 50.464 | 646 | 264 | 5 | 35 | 626 | 24 | 667 | 0.0 | 664 |
| MS.gene05062.t1 | AT4G24120 | 49.265 | 680 | 277 | 7 | 1 | 628 | 9 | 672 | 0.0 | 656 |
| MS.gene05062.t1 | AT5G41000 | 48.372 | 645 | 254 | 5 | 35 | 626 | 24 | 642 | 0.0 | 628 |
| MS.gene05062.t1 | AT5G53550 | 58.200 | 500 | 202 | 3 | 128 | 627 | 15 | 507 | 0.0 | 590 |
| MS.gene05062.t1 | AT5G41000 | 53.955 | 493 | 223 | 4 | 136 | 626 | 1 | 491 | 0.0 | 558 |
| MS.gene05062.t1 | AT5G45450 | 66.184 | 207 | 64 | 1 | 422 | 628 | 1 | 201 | 1.44e-90 | 280 |
Find 143 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGTTTCTGCCGGATTGTT+AGG | 0.216922 | 3.4:-65779492 | MS.gene05062:CDS |
| ATTATTGTGAGCCAAGTTAT+TGG | 0.221316 | 3.4:-65777243 | MS.gene05062:CDS |
| GAGGAGATCTCTGTGGAAAA+AGG | 0.248700 | 3.4:-65779651 | MS.gene05062:CDS |
| TACAACTTTGAGAAAGTTCT+TGG | 0.255627 | 3.4:-65777753 | MS.gene05062:CDS |
| TTTGGATCAGCTGTTGCTTC+TGG | 0.276008 | 3.4:-65776847 | MS.gene05062:CDS |
| TGATATGTGGAGATGGAATT+TGG | 0.283833 | 3.4:-65776822 | MS.gene05062:CDS |
| TACTTGCTTCTTTGCTAGTT+TGG | 0.292733 | 3.4:+65778661 | None:intergenic |
| AGCGAAATATTGATTATATA+TGG | 0.302737 | 3.4:+65778213 | None:intergenic |
| GCGAACAAAATTAATAAATA+TGG | 0.307908 | 3.4:+65777023 | None:intergenic |
| TGGCTATTCTACAACGCTTT+TGG | 0.309037 | 3.4:-65777183 | MS.gene05062:CDS |
| TGATGTAATACCACTTTAAC+TGG | 0.322754 | 3.4:+65777517 | None:intergenic |
| GAAGCTTGATATTGTTTATA+TGG | 0.322854 | 3.4:-65776900 | MS.gene05062:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 3.4:+65779411 | None:intergenic |
| AAATTAGCCATCTTTGCTAT+TGG | 0.329826 | 3.4:-65777405 | MS.gene05062:CDS |
| CCATCTTTGCTATTGGTGCT+TGG | 0.330506 | 3.4:-65777398 | MS.gene05062:CDS |
| ATCAATATTTCGCTGTTGAT+TGG | 0.338595 | 3.4:-65778204 | MS.gene05062:CDS |
| GTTTGGCACCTTTAGATGTA+TGG | 0.359396 | 3.4:+65778678 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 3.4:-65777786 | MS.gene05062:CDS |
| CATCTTTGCTATTGGTGCTT+GGG | 0.364449 | 3.4:-65777397 | MS.gene05062:CDS |
| AGGGCTAAGGCTGATGCATT+TGG | 0.367842 | 3.4:-65776865 | MS.gene05062:CDS |
| TTATATGGCAGAAGGTTGAT+AGG | 0.370237 | 3.4:-65776885 | MS.gene05062:CDS |
| CTTCTCCTTTAGCTTCTTGT+GGG | 0.372218 | 3.4:-65778621 | MS.gene05062:CDS |
| GCAAGAGCAAGAAAAGAGTT+TGG | 0.376106 | 3.4:+65776793 | None:intergenic |
| CAAGTTTATTCCTGTTCCTA+TGG | 0.376222 | 3.4:-65776977 | MS.gene05062:CDS |
| TTTACGAACTTCCCCACATT+TGG | 0.377983 | 3.4:-65778557 | MS.gene05062:CDS |
| TGATTGGTGGAATTCTTTCA+TGG | 0.388694 | 3.4:-65778188 | MS.gene05062:CDS |
| AAGTTGCTTCCAATGTAAAA+TGG | 0.389817 | 3.4:+65776943 | None:intergenic |
| TTCCGAAACATTGCAATACT+AGG | 0.400505 | 3.4:-65777111 | MS.gene05062:CDS |
| ATGAAGTTGAATCTCACAAC+TGG | 0.401497 | 3.4:-65779531 | MS.gene05062:CDS |
| CACCTAGTATTGCAATGTTT+CGG | 0.403784 | 3.4:+65777109 | None:intergenic |
| TCTTGTGGGGCTTCTTCCAA+TGG | 0.405643 | 3.4:-65778607 | MS.gene05062:CDS |
| TTTGCTATTGGTGCTTGGGC+AGG | 0.409226 | 3.4:-65777393 | MS.gene05062:CDS |
| TGTTCCAACGTGGCAGAAAC+AGG | 0.410040 | 3.4:-65779613 | MS.gene05062:CDS |
| GTAGGTGGGAGAGGAGCATT+TGG | 0.412469 | 3.4:+65777666 | None:intergenic |
| ACTAGGTGTGGACGGATTCT+CGG | 0.412802 | 3.4:-65777094 | MS.gene05062:CDS |
| AAAACAAGTGCGTACGGTGC+AGG | 0.420051 | 3.4:+65777132 | None:intergenic |
| AGAGGAGCATTTGGATCATC+AGG | 0.423631 | 3.4:+65777675 | None:intergenic |
| GACAAGAATTTCATGCAAAT+AGG | 0.425369 | 3.4:+65776757 | None:intergenic |
| CGGCATGGCTGCGGTTGCAC+CGG | 0.427222 | 3.4:-65779694 | MS.gene05062:CDS |
| TATTCCTGTTCCTATGGCTA+TGG | 0.427311 | 3.4:-65776971 | MS.gene05062:CDS |
| GATTGGTGGAATTCTTTCAT+GGG | 0.431679 | 3.4:-65778187 | MS.gene05062:CDS |
| ATGAGGGGATTTGATCTTTG+AGG | 0.439237 | 3.4:+65777607 | None:intergenic |
| TCTTCTCCTTTAGCTTCTTG+TGG | 0.441527 | 3.4:-65778622 | MS.gene05062:CDS |
| GTTGCTTCTGGTTTGATATG+TGG | 0.442292 | 3.4:-65776835 | MS.gene05062:CDS |
| TGGTCCCTTGCATCGACTTA+CGG | 0.448596 | 3.4:-65777429 | MS.gene05062:CDS |
| CTCATGCAAGACTTCAAAAC+AGG | 0.450675 | 3.4:-65777294 | MS.gene05062:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.451917 | 3.4:-65779378 | MS.gene05062:CDS |
| GGTGTCATGTGGCCTCTCAT+TGG | 0.456041 | 3.4:-65778165 | MS.gene05062:CDS |
| CCATGGCAGTTCCAATAACT+TGG | 0.458984 | 3.4:+65777232 | None:intergenic |
| GGCAGAAACAGGTTACCGTT+AGG | 0.459884 | 3.4:-65779602 | MS.gene05062:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.462139 | 3.4:-65778102 | MS.gene05062:CDS |
| ATGTTTCTGCCGGATTGTTA+GGG | 0.469509 | 3.4:-65779491 | MS.gene05062:CDS |
| CCAAGCACCAATAGCAAAGA+TGG | 0.470705 | 3.4:+65777398 | None:intergenic |
| CTCAAACAAAGCAGCTTACA+TGG | 0.473967 | 3.4:-65778111 | MS.gene05062:CDS |
| AACAGTTTCCATACATCTAA+AGG | 0.479537 | 3.4:-65778686 | MS.gene05062:CDS |
| GCCGTGGCTTTCGACGTCAT+AGG | 0.479696 | 3.4:+65779713 | None:intergenic |
| CCCTCATGGTTCGCAATCGC+AGG | 0.486909 | 3.4:-65777591 | MS.gene05062:CDS |
| CTGCTTTGTTTGAGATCAGA+AGG | 0.490312 | 3.4:+65778120 | None:intergenic |
| AATATTTCGCTGTTGATTGG+TGG | 0.495302 | 3.4:-65778201 | MS.gene05062:CDS |
| TTCACTGCCGGCGATGCTTG+TGG | 0.495972 | 3.4:-65778581 | MS.gene05062:CDS |
| GCTTGGGCAGGTGCAGCAAA+CGG | 0.498652 | 3.4:-65777381 | MS.gene05062:CDS |
| ACTTTAACTGGTGGAAAATG+TGG | 0.498976 | 3.4:+65777529 | None:intergenic |
| TTCTTTCATGGGGTGTCATG+TGG | 0.500744 | 3.4:-65778176 | MS.gene05062:CDS |
| ATAGCCATAGCCATAGGAAC+AGG | 0.504745 | 3.4:+65776967 | None:intergenic |
| AATAACAGTATTCTCCTGTC+TGG | 0.507862 | 3.4:+65779404 | None:intergenic |
| GCAGAAACAGGTTACCGTTA+GGG | 0.508322 | 3.4:-65779601 | MS.gene05062:CDS |
| TTGTCGTCGAATGAAATTGT+AGG | 0.509132 | 3.4:+65777648 | None:intergenic |
| CCGTGGCTTTCGACGTCATA+GGG | 0.509154 | 3.4:+65779714 | None:intergenic |
| GCAAACGGCGGTGTCCTAGC+TGG | 0.509914 | 3.4:-65777366 | MS.gene05062:CDS |
| CGAAAGCCACGGCATGGCTG+CGG | 0.511258 | 3.4:-65779703 | MS.gene05062:CDS |
| CAAAACAGGTTACATGACAT+TGG | 0.515553 | 3.4:-65777280 | MS.gene05062:CDS |
| TGAGCTGTTGCGGTACCACT+TGG | 0.516027 | 3.4:+65778716 | None:intergenic |
| ACCAAGTTGTTTGAGAAAGC+TGG | 0.516746 | 3.4:-65779447 | MS.gene05062:CDS |
| TTTGGTACTCTTGGTCAACC+TGG | 0.521145 | 3.4:-65777165 | MS.gene05062:CDS |
| CAGATTATGATTGTTGACTT+CGG | 0.523151 | 3.4:-65778749 | MS.gene05062:CDS |
| ACCAGCTTTCTCAAACAACT+TGG | 0.524027 | 3.4:+65779446 | None:intergenic |
| CAAGTTATTGGAACTGCCAT+GGG | 0.526561 | 3.4:-65777231 | MS.gene05062:CDS |
| CCTTCGTTGAATGTTTCTGC+CGG | 0.531085 | 3.4:-65779501 | MS.gene05062:CDS |
| TTTGCTATTGATATGTGTGT+TGG | 0.532358 | 3.4:-65776922 | MS.gene05062:CDS |
| GATATTGTTTATATGGCAGA+AGG | 0.532514 | 3.4:-65776893 | MS.gene05062:CDS |
| CGTAAATCCACAAGCATCGC+CGG | 0.533993 | 3.4:+65778574 | None:intergenic |
| TTCAGTGGTTCCACTCCGAA+AGG | 0.534003 | 3.4:-65779024 | MS.gene05062:intron |
| CCAAGTTATTGGAACTGCCA+TGG | 0.540066 | 3.4:-65777232 | MS.gene05062:CDS |
| AATGAAATTGTAGGTGGGAG+AGG | 0.543345 | 3.4:+65777657 | None:intergenic |
| GTGCAACCGCAGCCATGCCG+TGG | 0.547128 | 3.4:+65779697 | None:intergenic |
| ATTTGTGAGTCTCATGTTGT+CGG | 0.550561 | 3.4:-65779574 | MS.gene05062:CDS |
| GAAGCCCCACAAGAAGCTAA+AGG | 0.550595 | 3.4:+65778616 | None:intergenic |
| TATATGGCAGAAGGTTGATA+GGG | 0.551781 | 3.4:-65776884 | MS.gene05062:CDS |
| CTTTAACTGGTGGAAAATGT+GGG | 0.552788 | 3.4:+65777530 | None:intergenic |
| AAACAAGTGCGTACGGTGCA+GGG | 0.554203 | 3.4:+65777133 | None:intergenic |
| TTGATCTTTGAGGAACATCT+CGG | 0.554704 | 3.4:+65777617 | None:intergenic |
| GCATTGCAAAAGGCTAATGC+GGG | 0.561842 | 3.4:+65777474 | None:intergenic |
| TGGCTCACAATAATTGATCT+CGG | 0.563132 | 3.4:+65777252 | None:intergenic |
| ATGGTTGTGGACTAACAGAT+TGG | 0.563504 | 3.4:-65777449 | MS.gene05062:CDS |
| ACAACCATAGGCATTGCAAA+AGG | 0.564312 | 3.4:+65777464 | None:intergenic |
| ATTGGCTTCGAGACCAAATG+TGG | 0.565976 | 3.4:+65778544 | None:intergenic |
| ATCTGTTAGTCCACAACCAT+AGG | 0.575557 | 3.4:+65777452 | None:intergenic |
| GGCATTGCAAAAGGCTAATG+CGG | 0.578668 | 3.4:+65777473 | None:intergenic |
| AAGAAGCAAGTACAAGCACT+TGG | 0.583235 | 3.4:-65778650 | MS.gene05062:CDS |
| TTCTCCTTTAGCTTCTTGTG+GGG | 0.585324 | 3.4:-65778620 | MS.gene05062:CDS |
| TCTGGTTTGATATGTGGAGA+TGG | 0.585954 | 3.4:-65776829 | MS.gene05062:CDS |
| GCAGAAGGTTGATAGGGCTA+AGG | 0.589889 | 3.4:-65776878 | MS.gene05062:CDS |
| AAGAATTTCATGCAAATAGG+TGG | 0.591699 | 3.4:+65776760 | None:intergenic |
| AATGGTATAGCCATAGCCAT+AGG | 0.595250 | 3.4:+65776961 | None:intergenic |
| CCCTATGACGTCGAAAGCCA+CGG | 0.598986 | 3.4:-65779714 | MS.gene05062:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 3.4:-65777780 | MS.gene05062:CDS |
| CTGCGATTGCGAACCATGAG+GGG | 0.600720 | 3.4:+65777592 | None:intergenic |
| TCGTCGAATGAAATTGTAGG+TGG | 0.601326 | 3.4:+65777651 | None:intergenic |
| TGGGCAGGTGCAGCAAACGG+CGG | 0.601838 | 3.4:-65777378 | MS.gene05062:CDS |
| AAACATTGCAATACTAGGTG+TGG | 0.604006 | 3.4:-65777106 | MS.gene05062:CDS |
| GGTGCAGGGTATGCTGTACC+AGG | 0.605516 | 3.4:+65777147 | None:intergenic |
| TGTAATACCACTTTAACTGG+TGG | 0.608743 | 3.4:+65777520 | None:intergenic |
| ATTGGTGGAATTCTTTCATG+GGG | 0.611593 | 3.4:-65778186 | MS.gene05062:CDS |
| TCAAAGATCAAATCCCCTCA+TGG | 0.616210 | 3.4:-65777605 | MS.gene05062:CDS |
| TGCTTTGTTTGAGATCAGAA+GGG | 0.617049 | 3.4:+65778121 | None:intergenic |
| TTTCGGAAAACAAGTGCGTA+CGG | 0.617609 | 3.4:+65777126 | None:intergenic |
| TGACGTCGAAAGCCACGGCA+TGG | 0.618397 | 3.4:-65779709 | MS.gene05062:CDS |
| ACTCACAAATACTGCCCTAA+CGG | 0.620651 | 3.4:+65779587 | None:intergenic |
| GTAACCTGTTTCTGCCACGT+TGG | 0.621811 | 3.4:+65779609 | None:intergenic |
| CGGCGATATAACACATCCCA+TGG | 0.622349 | 3.4:+65777215 | None:intergenic |
| CACATGCTGCTAAACCAGCT+AGG | 0.625534 | 3.4:+65777352 | None:intergenic |
| CCTGCGATTGCGAACCATGA+GGG | 0.627054 | 3.4:+65777591 | None:intergenic |
| CGTCGAATGAAATTGTAGGT+GGG | 0.643309 | 3.4:+65777652 | None:intergenic |
| AGTTAGTGTACCTTTCGGAG+TGG | 0.644340 | 3.4:+65779014 | None:intergenic |
| TTGGCTTCGAGACCAAATGT+GGG | 0.645218 | 3.4:+65778545 | None:intergenic |
| TTTAACTGGTGGAAAATGTG+GGG | 0.646034 | 3.4:+65777531 | None:intergenic |
| CTAGCTGGTTTAGCAGCATG+TGG | 0.651793 | 3.4:-65777351 | MS.gene05062:CDS |
| ATTGCAATACTAGGTGTGGA+CGG | 0.653404 | 3.4:-65777102 | MS.gene05062:CDS |
| AGTTGTTTGAGAAAGCTGGT+TGG | 0.654166 | 3.4:-65779443 | MS.gene05062:CDS |
| AAAACACAATGCAGAGTACG+AGG | 0.657663 | 3.4:+65777055 | None:intergenic |
| GTTGATAAGATGAGCTGTTG+CGG | 0.660296 | 3.4:+65778706 | None:intergenic |
| AGTTGTTCATCATTCAACAC+CGG | 0.662303 | 3.4:+65779675 | None:intergenic |
| TTAACTGGTGGAAAATGTGG+GGG | 0.668117 | 3.4:+65777532 | None:intergenic |
| TGAAGTTGAATCTCACAACT+GGG | 0.670966 | 3.4:-65779530 | MS.gene05062:CDS |
| GTTGAATGATGAACAACTTG+AGG | 0.685365 | 3.4:-65779670 | MS.gene05062:CDS |
| CCGGCAGAAACATTCAACGA+AGG | 0.690369 | 3.4:+65779501 | None:intergenic |
| TAGAATAGCCAGAAAACACA+CGG | 0.691145 | 3.4:+65777195 | None:intergenic |
| ACAACTTGAGGAGATCTCTG+TGG | 0.691473 | 3.4:-65779658 | MS.gene05062:CDS |
| GCTAGTGGAATTGCATTCAG+CGG | 0.695424 | 3.4:-65779363 | MS.gene05062:intron |
| TGGCTTCGAGACCAAATGTG+GGG | 0.699777 | 3.4:+65778546 | None:intergenic |
| GCCTGCGATTGCGAACCATG+AGG | 0.704001 | 3.4:+65777590 | None:intergenic |
| TTCGGATTGACATATCCAAG+TGG | 0.715978 | 3.4:-65778731 | MS.gene05062:CDS |
| AAGGAACATCTGTTCCAACG+TGG | 0.742375 | 3.4:-65779623 | MS.gene05062:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTAAAACTAAATGTT+TGG | + | chr3.4:65777697-65777716 | None:intergenic | 10.0% |
| !! | GCAAAATCAAATAATTAAAA+AGG | + | chr3.4:65777540-65777559 | None:intergenic | 15.0% |
| !! | TAAATGTTAGATAAAAGAAA+AGG | + | chr3.4:65778177-65778196 | None:intergenic | 15.0% |
| !! | TATTATTTAATGTACATAAC+AGG | - | chr3.4:65778195-65778214 | MS.gene05062:CDS | 15.0% |
| !! | TTCTCTCATTAATAAAATAA+AGG | + | chr3.4:65777981-65778000 | None:intergenic | 15.0% |
| !! | ACTTGTTCTAATAACTATTA+GGG | + | chr3.4:65777200-65777219 | None:intergenic | 20.0% |
| !! | AGTCAAGTATTAAATTGAAA+TGG | + | chr3.4:65777154-65777173 | None:intergenic | 20.0% |
| !! | GCAATATTATCTAAAAAAGT+TGG | + | chr3.4:65778122-65778141 | None:intergenic | 20.0% |
| !! | GCGAACAAAATTAATAAATA+TGG | + | chr3.4:65779459-65779478 | None:intergenic | 20.0% |
| !!! | AACTTGTTCTAATAACTATT+AGG | + | chr3.4:65777201-65777220 | None:intergenic | 20.0% |
| !!! | AGCGAAATATTGATTATATA+TGG | + | chr3.4:65778269-65778288 | None:intergenic | 20.0% |
| !!! | TAGTTGATAATGTATTCTTT+TGG | - | chr3.4:65778631-65778650 | MS.gene05062:CDS | 20.0% |
| !!! | TGAATCGATTTTTAAAACAT+GGG | - | chr3.4:65777659-65777678 | MS.gene05062:CDS | 20.0% |
| !!! | TTGAAGGTTACATTTTATTA+AGG | + | chr3.4:65777503-65777522 | None:intergenic | 20.0% |
| !!! | TTGAATCGATTTTTAAAACA+TGG | - | chr3.4:65777658-65777677 | MS.gene05062:CDS | 20.0% |
| !!! | TTGTATTCTTTTTAAATCAC+AGG | - | chr3.4:65778665-65778684 | MS.gene05062:CDS | 20.0% |
| !!! | TTTTAGGTTTGAAAAAACAA+TGG | - | chr3.4:65778757-65778776 | MS.gene05062:intron | 20.0% |
| ! | AAAAAATTAACTCTGTTGCT+TGG | - | chr3.4:65778017-65778036 | MS.gene05062:intron | 25.0% |
| ! | AGATTTGTCAACTACAAATA+AGG | + | chr3.4:65777267-65777286 | None:intergenic | 25.0% |
| ! | ATTGAAAACAAGTACAAAAC+TGG | - | chr3.4:65778565-65778584 | MS.gene05062:CDS | 25.0% |
| ! | CAAAGTATACTTACAAAAAG+TGG | + | chr3.4:65778484-65778503 | None:intergenic | 25.0% |
| ! | CAACTTAAAACACAGTTAAT+TGG | - | chr3.4:65778542-65778561 | MS.gene05062:CDS | 25.0% |
| ! | GAAAAATAGTAGTTTCTCAA+TGG | - | chr3.4:65778515-65778534 | MS.gene05062:intron | 25.0% |
| ! | GAAGCTTGATATTGTTTATA+TGG | - | chr3.4:65779579-65779598 | MS.gene05062:CDS | 25.0% |
| ! | TAATAAGTTAGTGTACCTTT+CGG | + | chr3.4:65777473-65777492 | None:intergenic | 25.0% |
| !! | ATTTACGTACATCTTTTGAT+TGG | + | chr3.4:65777956-65777975 | None:intergenic | 25.0% |
| !! | TAAAAAATTGACTCATGAGT+TGG | - | chr3.4:65777615-65777634 | MS.gene05062:CDS | 25.0% |
| !! | TTTAAATCACAGGTTTTCAT+AGG | - | chr3.4:65778675-65778694 | MS.gene05062:CDS | 25.0% |
| !!! | CACTTTTTGTAAGTATACTT+TGG | - | chr3.4:65778482-65778501 | MS.gene05062:intron | 25.0% |
| !!! | TTGTAAGTATACTTTGGAAT+TGG | - | chr3.4:65778488-65778507 | MS.gene05062:intron | 25.0% |
| AAAGAAAAACCCTAACAATC+CGG | + | chr3.4:65777000-65777019 | None:intergenic | 30.0% | |
| AACAATCATAATCTGCAACA+TGG | + | chr3.4:65777725-65777744 | None:intergenic | 30.0% | |
| AACAGTTTCCATACATCTAA+AGG | - | chr3.4:65777793-65777812 | MS.gene05062:CDS | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | - | chr3.4:65778078-65778097 | MS.gene05062:intron | 30.0% | |
| AACCTTCAACACTAGAATAT+AGG | - | chr3.4:65777514-65777533 | MS.gene05062:CDS | 30.0% | |
| AAGAATTTCATGCAAATAGG+TGG | + | chr3.4:65779722-65779741 | None:intergenic | 30.0% | |
| AAGTTGCTTCCAATGTAAAA+TGG | + | chr3.4:65779539-65779558 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | - | chr3.4:65778572-65778591 | MS.gene05062:CDS | 30.0% | |
| ATCAATATTTCGCTGTTGAT+TGG | - | chr3.4:65778275-65778294 | MS.gene05062:intron | 30.0% | |
| ATTATTGTGAGCCAAGTTAT+TGG | - | chr3.4:65779236-65779255 | MS.gene05062:intron | 30.0% | |
| GACAAGAATTTCATGCAAAT+AGG | + | chr3.4:65779725-65779744 | None:intergenic | 30.0% | |
| GATATTGTTTATATGGCAGA+AGG | - | chr3.4:65779586-65779605 | MS.gene05062:CDS | 30.0% | |
| TGATGTAATACCACTTTAAC+TGG | + | chr3.4:65778965-65778984 | None:intergenic | 30.0% | |
| ! | AAATTAGCCATCTTTGCTAT+TGG | - | chr3.4:65779074-65779093 | MS.gene05062:intron | 30.0% |
| ! | ATGGCTATACCATTTTACAT+TGG | - | chr3.4:65779527-65779546 | MS.gene05062:CDS | 30.0% |
| ! | TACAACTTTGAGAAAGTTCT+TGG | - | chr3.4:65778726-65778745 | MS.gene05062:CDS | 30.0% |
| ! | TATTAATTTTGTTCGCGACT+TGG | - | chr3.4:65779463-65779482 | MS.gene05062:CDS | 30.0% |
| !! | CAGATTATGATTGTTGACTT+CGG | - | chr3.4:65777730-65777749 | MS.gene05062:CDS | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | - | chr3.4:65777426-65777445 | MS.gene05062:CDS | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | - | chr3.4:65779557-65779576 | MS.gene05062:CDS | 30.0% |
| !!! | CGATTTTTAAAACATGGGAT+GGG | - | chr3.4:65777664-65777683 | MS.gene05062:CDS | 30.0% |
| !!! | GGAATTTGTTTTGCAATAGT+TGG | + | chr3.4:65777348-65777367 | None:intergenic | 30.0% |
| !!! | TCGATTTTTAAAACATGGGA+TGG | - | chr3.4:65777663-65777682 | MS.gene05062:CDS | 30.0% |
| AAACATTGCAATACTAGGTG+TGG | - | chr3.4:65779373-65779392 | MS.gene05062:CDS | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | + | chr3.4:65777078-65777097 | None:intergenic | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | + | chr3.4:65777385-65777404 | None:intergenic | 35.0% | |
| ACTTTAACTGGTGGAAAATG+TGG | + | chr3.4:65778953-65778972 | None:intergenic | 35.0% | |
| AGTTGTTCATCATTCAACAC+CGG | + | chr3.4:65776807-65776826 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | - | chr3.4:65778699-65778718 | MS.gene05062:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | - | chr3.4:65778693-65778712 | MS.gene05062:CDS | 35.0% | |
| ATGAAGTTGAATCTCACAAC+TGG | - | chr3.4:65776948-65776967 | MS.gene05062:CDS | 35.0% | |
| ATTGGTGGAATTCTTTCATG+GGG | - | chr3.4:65778293-65778312 | MS.gene05062:intron | 35.0% | |
| ATTTGTGAGTCTCATGTTGT+CGG | - | chr3.4:65776905-65776924 | MS.gene05062:CDS | 35.0% | |
| CAAAACAGGTTACATGACAT+TGG | - | chr3.4:65779199-65779218 | MS.gene05062:intron | 35.0% | |
| CAAGTTTATTCCTGTTCCTA+TGG | - | chr3.4:65779502-65779521 | MS.gene05062:CDS | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | + | chr3.4:65778083-65778102 | None:intergenic | 35.0% | |
| CACCTAGTATTGCAATGTTT+CGG | + | chr3.4:65779373-65779392 | None:intergenic | 35.0% | |
| CTTTAACTGGTGGAAAATGT+GGG | + | chr3.4:65778952-65778971 | None:intergenic | 35.0% | |
| GAACATAGAGGTTTCAGTTT+CGG | + | chr3.4:65778071-65778090 | None:intergenic | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | - | chr3.4:65777387-65777406 | MS.gene05062:CDS | 35.0% | |
| GATTGGTGGAATTCTTTCAT+GGG | - | chr3.4:65778292-65778311 | MS.gene05062:intron | 35.0% | |
| GTTGAATGATGAACAACTTG+AGG | - | chr3.4:65776809-65776828 | MS.gene05062:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | + | chr3.4:65777821-65777840 | None:intergenic | 35.0% | |
| TAGAATAGCCAGAAAACACA+CGG | + | chr3.4:65779287-65779306 | None:intergenic | 35.0% | |
| TGAAGTTGAATCTCACAACT+GGG | - | chr3.4:65776949-65776968 | MS.gene05062:CDS | 35.0% | |
| TGATATGTGGAGATGGAATT+TGG | - | chr3.4:65779657-65779676 | MS.gene05062:CDS | 35.0% | |
| TGATTGGTGGAATTCTTTCA+TGG | - | chr3.4:65778291-65778310 | MS.gene05062:intron | 35.0% | |
| TGGCTCACAATAATTGATCT+CGG | + | chr3.4:65779230-65779249 | None:intergenic | 35.0% | |
| TGTAATACCACTTTAACTGG+TGG | + | chr3.4:65778962-65778981 | None:intergenic | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | - | chr3.4:65777391-65777410 | MS.gene05062:CDS | 35.0% | |
| TTCCGAAACATTGCAATACT+AGG | - | chr3.4:65779368-65779387 | MS.gene05062:CDS | 35.0% | |
| TTGTCGTCGAATGAAATTGT+AGG | + | chr3.4:65778834-65778853 | None:intergenic | 35.0% | |
| TTTAACTGGTGGAAAATGTG+GGG | + | chr3.4:65778951-65778970 | None:intergenic | 35.0% | |
| ! | AATATTTCGCTGTTGATTGG+TGG | - | chr3.4:65778278-65778297 | MS.gene05062:intron | 35.0% |
| ! | ACATTTTCCACCAGTTAAAG+TGG | - | chr3.4:65778952-65778971 | MS.gene05062:intron | 35.0% |
| ! | ATTTTTCTGCTACCTATGTG+GGG | - | chr3.4:65778228-65778247 | MS.gene05062:CDS | 35.0% |
| ! | CTCTGCATTGTGTTTTTCTT+CGG | - | chr3.4:65779431-65779450 | MS.gene05062:CDS | 35.0% |
| ! | GATTTTTCTGCTACCTATGT+GGG | - | chr3.4:65778227-65778246 | MS.gene05062:CDS | 35.0% |
| ! | GGTTTTTCTTTGTGAAGACA+TGG | - | chr3.4:65777009-65777028 | MS.gene05062:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | - | chr3.4:65777061-65777080 | MS.gene05062:CDS | 35.0% |
| ! | TGATTTTTCTGCTACCTATG+TGG | - | chr3.4:65778226-65778245 | MS.gene05062:CDS | 35.0% |
| ! | TTATATGGCAGAAGGTTGAT+AGG | - | chr3.4:65779594-65779613 | MS.gene05062:CDS | 35.0% |
| ! | TTGATCTTTGAGGAACATCT+CGG | + | chr3.4:65778865-65778884 | None:intergenic | 35.0% |
| !! | TATATGGCAGAAGGTTGATA+GGG | - | chr3.4:65779595-65779614 | MS.gene05062:CDS | 35.0% |
| !! | TGCTTTGTTTGAGATCAGAA+GGG | + | chr3.4:65778361-65778380 | None:intergenic | 35.0% |
| !! | TTGGTGCTAAAAAAGGAGAT+TGG | - | chr3.4:65778333-65778352 | MS.gene05062:intron | 35.0% |
| AAAACACAATGCAGAGTACG+AGG | + | chr3.4:65779427-65779446 | None:intergenic | 40.0% | |
| AAGAAGCAAGTACAAGCACT+TGG | - | chr3.4:65777829-65777848 | MS.gene05062:intron | 40.0% | |
| AATGAAATTGTAGGTGGGAG+AGG | + | chr3.4:65778825-65778844 | None:intergenic | 40.0% | |
| AATGGTATAGCCATAGCCAT+AGG | + | chr3.4:65779521-65779540 | None:intergenic | 40.0% | |
| ACCAAGTTGTTTGAGAAAGC+TGG | - | chr3.4:65777032-65777051 | MS.gene05062:CDS | 40.0% | |
| ACCAGCTTTCTCAAACAACT+TGG | + | chr3.4:65777036-65777055 | None:intergenic | 40.0% | |
| ACTCACAAATACTGCCCTAA+CGG | + | chr3.4:65776895-65776914 | None:intergenic | 40.0% | |
| AGGAGATCTCTGTGGAAAAA+GGG | - | chr3.4:65776829-65776848 | MS.gene05062:CDS | 40.0% | |
| AGTTGTTTGAGAAAGCTGGT+TGG | - | chr3.4:65777036-65777055 | MS.gene05062:CDS | 40.0% | |
| ATCTGTTAGTCCACAACCAT+AGG | + | chr3.4:65779030-65779049 | None:intergenic | 40.0% | |
| ATGAGGGGATTTGATCTTTG+AGG | + | chr3.4:65778875-65778894 | None:intergenic | 40.0% | |
| ATTGCAATACTAGGTGTGGA+CGG | - | chr3.4:65779377-65779396 | MS.gene05062:CDS | 40.0% | |
| CAAGTTATTGGAACTGCCAT+GGG | - | chr3.4:65779248-65779267 | MS.gene05062:intron | 40.0% | |
| CGTCGAATGAAATTGTAGGT+GGG | + | chr3.4:65778830-65778849 | None:intergenic | 40.0% | |
| CTCAAACAAAGCAGCTTACA+TGG | - | chr3.4:65778368-65778387 | MS.gene05062:intron | 40.0% | |
| CTCATGCAAGACTTCAAAAC+AGG | - | chr3.4:65779185-65779204 | MS.gene05062:intron | 40.0% | |
| GCAAAACAAATTCCAGAAGC+TGG | - | chr3.4:65777354-65777373 | MS.gene05062:CDS | 40.0% | |
| GCAAGAGCAAGAAAAGAGTT+TGG | + | chr3.4:65779689-65779708 | None:intergenic | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | - | chr3.4:65777381-65777400 | MS.gene05062:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | + | chr3.4:65777071-65777090 | None:intergenic | 40.0% | |
| GTTTGGCACCTTTAGATGTA+TGG | + | chr3.4:65777804-65777823 | None:intergenic | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | - | chr3.4:65779508-65779527 | MS.gene05062:CDS | 40.0% | |
| TCAAAGATCAAATCCCCTCA+TGG | - | chr3.4:65778874-65778893 | MS.gene05062:intron | 40.0% | |
| TCGTCGAATGAAATTGTAGG+TGG | + | chr3.4:65778831-65778850 | None:intergenic | 40.0% | |
| TCTGTGGAAAAAGGGTTTGA+AGG | - | chr3.4:65776837-65776856 | MS.gene05062:CDS | 40.0% | |
| TTAACTGGTGGAAAATGTGG+GGG | + | chr3.4:65778950-65778969 | None:intergenic | 40.0% | |
| TTCGGATTGACATATCCAAG+TGG | - | chr3.4:65777748-65777767 | MS.gene05062:CDS | 40.0% | |
| TTTACGAACTTCCCCACATT+TGG | - | chr3.4:65777922-65777941 | MS.gene05062:intron | 40.0% | |
| TTTCGGAAAACAAGTGCGTA+CGG | + | chr3.4:65779356-65779375 | None:intergenic | 40.0% | |
| ! | AACTCTTTTCTTGCTCTTGC+TGG | - | chr3.4:65779689-65779708 | MS.gene05062:CDS | 40.0% |
| ! | AATGTTTCTGCCGGATTGTT+AGG | - | chr3.4:65776987-65777006 | MS.gene05062:CDS | 40.0% |
| ! | ACAACCATAGGCATTGCAAA+AGG | + | chr3.4:65779018-65779037 | None:intergenic | 40.0% |
| ! | ATGGTTGTGGACTAACAGAT+TGG | - | chr3.4:65779030-65779049 | MS.gene05062:intron | 40.0% |
| ! | ATGTTTCTGCCGGATTGTTA+GGG | - | chr3.4:65776988-65777007 | MS.gene05062:CDS | 40.0% |
| ! | ATTTTCCGTAAGTCGATGCA+AGG | + | chr3.4:65779058-65779077 | None:intergenic | 40.0% |
| ! | CTTCTCCTTTAGCTTCTTGT+GGG | - | chr3.4:65777858-65777877 | MS.gene05062:intron | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | - | chr3.4:65777440-65777459 | MS.gene05062:CDS | 40.0% |
| ! | GGCCTATATTCTAGTGTTGA+AGG | + | chr3.4:65777519-65777538 | None:intergenic | 40.0% |
| ! | GTTCTTGGCACAACTCTTTT+AGG | - | chr3.4:65778741-65778760 | MS.gene05062:CDS | 40.0% |
| ! | GTTGATAAGATGAGCTGTTG+CGG | + | chr3.4:65777776-65777795 | None:intergenic | 40.0% |
| ! | TACAACGCTTTTGGTACTCT+TGG | - | chr3.4:65779305-65779324 | MS.gene05062:intron | 40.0% |
| ! | TCTGGTTTGATATGTGGAGA+TGG | - | chr3.4:65779650-65779669 | MS.gene05062:CDS | 40.0% |
| ! | TCTTCTCCTTTAGCTTCTTG+TGG | - | chr3.4:65777857-65777876 | MS.gene05062:intron | 40.0% |
| ! | TGGCTATTCTACAACGCTTT+TGG | - | chr3.4:65779296-65779315 | MS.gene05062:intron | 40.0% |
| ! | TTATATCGCCGTGTGTTTTC+TGG | - | chr3.4:65779276-65779295 | MS.gene05062:intron | 40.0% |
| ! | TTCCAATGGTTTTTCACTGC+CGG | - | chr3.4:65777886-65777905 | MS.gene05062:intron | 40.0% |
| ! | TTCTCCTTTAGCTTCTTGTG+GGG | - | chr3.4:65777859-65777878 | MS.gene05062:intron | 40.0% |
| ! | TTTTCCGTAAGTCGATGCAA+GGG | + | chr3.4:65779057-65779076 | None:intergenic | 40.0% |
| ! | TTTTGCAATGCCTATGGTTG+TGG | - | chr3.4:65779017-65779036 | MS.gene05062:intron | 40.0% |
| ! | TTTTTCTGCTACCTATGTGG+GGG | - | chr3.4:65778229-65778248 | MS.gene05062:CDS | 40.0% |
| !! | CATCTTTGCTATTGGTGCTT+GGG | - | chr3.4:65779082-65779101 | MS.gene05062:intron | 40.0% |
| !! | CCTCTCATTGGTGCTAAAAA+AGG | - | chr3.4:65778326-65778345 | MS.gene05062:intron | 40.0% |
| !! | CTGCTTTGTTTGAGATCAGA+AGG | + | chr3.4:65778362-65778381 | None:intergenic | 40.0% |
| !! | GTTGCTTCTGGTTTGATATG+TGG | - | chr3.4:65779644-65779663 | MS.gene05062:CDS | 40.0% |
| !! | TTAGCCTTTTGCAATGCCTA+TGG | - | chr3.4:65779011-65779030 | MS.gene05062:intron | 40.0% |
| !!! | AATTTTGTTCGCGACTTGGT+TGG | - | chr3.4:65779467-65779486 | MS.gene05062:CDS | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAG+AGG | + | chr3.4:65778329-65778348 | None:intergenic | 40.0% |
| AAGGAACATCTGTTCCAACG+TGG | - | chr3.4:65776856-65776875 | MS.gene05062:CDS | 45.0% | |
| ACAACTTGAGGAGATCTCTG+TGG | - | chr3.4:65776821-65776840 | MS.gene05062:CDS | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | - | chr3.4:65778377-65778396 | MS.gene05062:intron | 45.0% | |
| AGTTAGTGTACCTTTCGGAG+TGG | + | chr3.4:65777468-65777487 | None:intergenic | 45.0% | |
| ATAGCCATAGCCATAGGAAC+AGG | + | chr3.4:65779515-65779534 | None:intergenic | 45.0% | |
| ATTCAAACATCGCTGCAACG+AGG | + | chr3.4:65777644-65777663 | None:intergenic | 45.0% | |
| CCAAGCACCAATAGCAAAGA+TGG | + | chr3.4:65779084-65779103 | None:intergenic | 45.0% | |
| CCAAGTTATTGGAACTGCCA+TGG | - | chr3.4:65779247-65779266 | MS.gene05062:intron | 45.0% | |
| CCATGGCAGTTCCAATAACT+TGG | + | chr3.4:65779250-65779269 | None:intergenic | 45.0% | |
| CTTGCTTTGCTTGCTTGTGT+AGG | - | chr3.4:65777291-65777310 | MS.gene05062:CDS | 45.0% | |
| CTTTGCTTGCTTGTGTAGGT+GGG | - | chr3.4:65777295-65777314 | MS.gene05062:CDS | 45.0% | |
| GAGGAGATCTCTGTGGAAAA+AGG | - | chr3.4:65776828-65776847 | MS.gene05062:CDS | 45.0% | |
| GCAGAAACAGGTTACCGTTA+GGG | - | chr3.4:65776878-65776897 | MS.gene05062:CDS | 45.0% | |
| GCATTGCAAAAGGCTAATGC+GGG | + | chr3.4:65779008-65779027 | None:intergenic | 45.0% | |
| GCTAGTGGAATTGCATTCAG+CGG | - | chr3.4:65777116-65777135 | MS.gene05062:CDS | 45.0% | |
| GGCATTGCAAAAGGCTAATG+CGG | + | chr3.4:65779009-65779028 | None:intergenic | 45.0% | |
| TTGGCTTCGAGACCAAATGT+GGG | + | chr3.4:65777937-65777956 | None:intergenic | 45.0% | |
| TTTGGTACTCTTGGTCAACC+TGG | - | chr3.4:65779314-65779333 | MS.gene05062:intron | 45.0% | |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | - | chr3.4:65777101-65777120 | MS.gene05062:CDS | 45.0% |
| ! | ATTGGCTTCGAGACCAAATG+TGG | + | chr3.4:65777938-65777957 | None:intergenic | 45.0% |
| ! | CAGAGTACGAGGCAGTTTTT+CGG | + | chr3.4:65779416-65779435 | None:intergenic | 45.0% |
| ! | CCTTCGTTGAATGTTTCTGC+CGG | - | chr3.4:65776978-65776997 | MS.gene05062:CDS | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | - | chr3.4:65778303-65778322 | MS.gene05062:intron | 45.0% |
| ! | TTTGGATCAGCTGTTGCTTC+TGG | - | chr3.4:65779632-65779651 | MS.gene05062:CDS | 45.0% |
| !! | AGAGGAGCATTTGGATCATC+AGG | + | chr3.4:65778807-65778826 | None:intergenic | 45.0% |
| !! | CCATCTTTGCTATTGGTGCT+TGG | - | chr3.4:65779081-65779100 | MS.gene05062:intron | 45.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | - | chr3.4:65778432-65778451 | MS.gene05062:intron | 5.0% |
| AAAACAAGTGCGTACGGTGC+AGG | + | chr3.4:65779350-65779369 | None:intergenic | 50.0% | |
| AAACAAGTGCGTACGGTGCA+GGG | + | chr3.4:65779349-65779368 | None:intergenic | 50.0% | |
| AGGGCTAAGGCTGATGCATT+TGG | - | chr3.4:65779614-65779633 | MS.gene05062:CDS | 50.0% | |
| CACATGCTGCTAAACCAGCT+AGG | + | chr3.4:65779130-65779149 | None:intergenic | 50.0% | |
| CCGGCAGAAACATTCAACGA+AGG | + | chr3.4:65776981-65777000 | None:intergenic | 50.0% | |
| CGGCGATATAACACATCCCA+TGG | + | chr3.4:65779267-65779286 | None:intergenic | 50.0% | |
| GAAGCCCCACAAGAAGCTAA+AGG | + | chr3.4:65777866-65777885 | None:intergenic | 50.0% | |
| GCTTTGCTTGCTTGTGTAGG+TGG | - | chr3.4:65777294-65777313 | MS.gene05062:CDS | 50.0% | |
| GGCAGAAACAGGTTACCGTT+AGG | - | chr3.4:65776877-65776896 | MS.gene05062:CDS | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | + | chr3.4:65778243-65778262 | None:intergenic | 50.0% | |
| TCTTGTGGGGCTTCTTCCAA+TGG | - | chr3.4:65777872-65777891 | MS.gene05062:intron | 50.0% | |
| TGGCTTCGAGACCAAATGTG+GGG | + | chr3.4:65777936-65777955 | None:intergenic | 50.0% | |
| TGTTCCAACGTGGCAGAAAC+AGG | - | chr3.4:65776866-65776885 | MS.gene05062:CDS | 50.0% | |
| TTCAGTGGTTCCACTCCGAA+AGG | - | chr3.4:65777455-65777474 | MS.gene05062:CDS | 50.0% | |
| ! | ACTAGGTGTGGACGGATTCT+CGG | - | chr3.4:65779385-65779404 | MS.gene05062:CDS | 50.0% |
| ! | CGTAAATCCACAAGCATCGC+CGG | + | chr3.4:65777908-65777927 | None:intergenic | 50.0% |
| ! | CTAGCTGGTTTAGCAGCATG+TGG | - | chr3.4:65779128-65779147 | MS.gene05062:intron | 50.0% |
| ! | CTTGCTTGTGTAGGTGGGTT+TGG | - | chr3.4:65777300-65777319 | MS.gene05062:CDS | 50.0% |
| !! | GCAGAAGGTTGATAGGGCTA+AGG | - | chr3.4:65779601-65779620 | MS.gene05062:CDS | 50.0% |
| !! | GTAACCTGTTTCTGCCACGT+TGG | + | chr3.4:65776873-65776892 | None:intergenic | 50.0% |
| !! | TGGTCCCTTGCATCGACTTA+CGG | - | chr3.4:65779050-65779069 | MS.gene05062:intron | 50.0% |
| !! | TTTGCTATTGGTGCTTGGGC+AGG | - | chr3.4:65779086-65779105 | MS.gene05062:intron | 50.0% |
| CCCTATGACGTCGAAAGCCA+CGG | - | chr3.4:65776765-65776784 | MS.gene05062:CDS | 55.0% | |
| CCGTGGCTTTCGACGTCATA+GGG | + | chr3.4:65776768-65776787 | None:intergenic | 55.0% | |
| CCTGCGATTGCGAACCATGA+GGG | + | chr3.4:65778891-65778910 | None:intergenic | 55.0% | |
| CGCCGGCAGTGAAAAACCAT+TGG | + | chr3.4:65777891-65777910 | None:intergenic | 55.0% | |
| CTGCGATTGCGAACCATGAG+GGG | + | chr3.4:65778890-65778909 | None:intergenic | 55.0% | |
| CTGCTACCTATGTGGGGGTT+GGG | - | chr3.4:65778234-65778253 | MS.gene05062:CDS | 55.0% | |
| TCATTGGCAGTGCCAGCTTC+TGG | + | chr3.4:65777369-65777388 | None:intergenic | 55.0% | |
| TCTGCTACCTATGTGGGGGT+TGG | - | chr3.4:65778233-65778252 | MS.gene05062:CDS | 55.0% | |
| TGAGCTGTTGCGGTACCACT+TGG | + | chr3.4:65777766-65777785 | None:intergenic | 55.0% | |
| ! | GGTGTCATGTGGCCTCTCAT+TGG | - | chr3.4:65778314-65778333 | MS.gene05062:intron | 55.0% |
| !! | GTAGGTGGGAGAGGAGCATT+TGG | + | chr3.4:65778816-65778835 | None:intergenic | 55.0% |
| CCCTCATGGTTCGCAATCGC+AGG | - | chr3.4:65778888-65778907 | MS.gene05062:intron | 60.0% | |
| GCCGTGGCTTTCGACGTCAT+AGG | + | chr3.4:65776769-65776788 | None:intergenic | 60.0% | |
| GCCTGCGATTGCGAACCATG+AGG | + | chr3.4:65778892-65778911 | None:intergenic | 60.0% | |
| GCTTGGGCAGGTGCAGCAAA+CGG | - | chr3.4:65779098-65779117 | MS.gene05062:intron | 60.0% | |
| GGTGCAGGGTATGCTGTACC+AGG | + | chr3.4:65779335-65779354 | None:intergenic | 60.0% | |
| TGACGTCGAAAGCCACGGCA+TGG | - | chr3.4:65776770-65776789 | MS.gene05062:CDS | 60.0% | |
| TTCACTGCCGGCGATGCTTG+TGG | - | chr3.4:65777898-65777917 | MS.gene05062:intron | 60.0% | |
| CGAAAGCCACGGCATGGCTG+CGG | - | chr3.4:65776776-65776795 | MS.gene05062:CDS | 65.0% | |
| GCAAACGGCGGTGTCCTAGC+TGG | - | chr3.4:65779113-65779132 | MS.gene05062:intron | 65.0% | |
| TGGGCAGGTGCAGCAAACGG+CGG | - | chr3.4:65779101-65779120 | MS.gene05062:intron | 65.0% | |
| CGGCATGGCTGCGGTTGCAC+CGG | - | chr3.4:65776785-65776804 | MS.gene05062:CDS | 70.0% | |
| GTGCAACCGCAGCCATGCCG+TGG | + | chr3.4:65776785-65776804 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 65776753 | 65779748 | 65776753 | ID=MS.gene05062 |
| chr3.4 | mRNA | 65776753 | 65779748 | 65776753 | ID=MS.gene05062.t1;Parent=MS.gene05062 |
| chr3.4 | exon | 65779364 | 65779748 | 65779364 | ID=MS.gene05062.t1.exon1;Parent=MS.gene05062.t1 |
| chr3.4 | CDS | 65779364 | 65779748 | 65779364 | ID=cds.MS.gene05062.t1;Parent=MS.gene05062.t1 |
| chr3.4 | exon | 65779025 | 65779041 | 65779025 | ID=MS.gene05062.t1.exon2;Parent=MS.gene05062.t1 |
| chr3.4 | CDS | 65779025 | 65779041 | 65779025 | ID=cds.MS.gene05062.t1;Parent=MS.gene05062.t1 |
| chr3.4 | exon | 65778536 | 65778768 | 65778536 | ID=MS.gene05062.t1.exon3;Parent=MS.gene05062.t1 |
| chr3.4 | CDS | 65778536 | 65778768 | 65778536 | ID=cds.MS.gene05062.t1;Parent=MS.gene05062.t1 |
| chr3.4 | exon | 65778095 | 65778284 | 65778095 | ID=MS.gene05062.t1.exon4;Parent=MS.gene05062.t1 |
| chr3.4 | CDS | 65778095 | 65778284 | 65778095 | ID=cds.MS.gene05062.t1;Parent=MS.gene05062.t1 |
| chr3.4 | exon | 65776753 | 65777814 | 65776753 | ID=MS.gene05062.t1.exon5;Parent=MS.gene05062.t1 |
| chr3.4 | CDS | 65776753 | 65777814 | 65776753 | ID=cds.MS.gene05062.t1;Parent=MS.gene05062.t1 |
| Gene Sequence |
| Protein sequence |
