Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05063.t1 | RHN68031.1 | 89.7 | 691 | 57 | 3 | 1 | 678 | 1 | 690 | 0.00E+00 | 1223.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05063.t1 | Q9SHY2 | 76.0 | 667 | 141 | 6 | 26 | 676 | 22 | 685 | 1.8e-295 | 1016.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05063.t1 | A0A396ITK6 | 89.7 | 691 | 57 | 3 | 1 | 678 | 1 | 690 | 0.0e+00 | 1223.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37726 | MS.gene05063 | PPI |
| MS.gene05216 | MS.gene05063 | PPI |
| MS.gene05063 | MS.gene57831 | PPI |
| MS.gene45566 | MS.gene05063 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05063.t1 | MTR_5g091600 | 87.734 | 693 | 59 | 5 | 1 | 678 | 1 | 682 | 0.0 | 1191 |
| MS.gene05063.t1 | MTR_3g063520 | 89.580 | 691 | 58 | 3 | 1 | 678 | 1 | 690 | 0.0 | 1174 |
| MS.gene05063.t1 | MTR_3g063490 | 83.885 | 695 | 92 | 4 | 1 | 676 | 1 | 694 | 0.0 | 1152 |
| MS.gene05063.t1 | MTR_6g077870 | 71.988 | 664 | 174 | 3 | 26 | 678 | 50 | 712 | 0.0 | 991 |
| MS.gene05063.t1 | MTR_6g077870 | 70.652 | 552 | 150 | 3 | 138 | 678 | 1 | 551 | 0.0 | 811 |
| MS.gene05063.t1 | MTR_7g028250 | 57.489 | 661 | 245 | 9 | 34 | 669 | 30 | 679 | 0.0 | 766 |
| MS.gene05063.t1 | MTR_3g092090 | 54.697 | 660 | 275 | 6 | 20 | 663 | 12 | 663 | 0.0 | 737 |
| MS.gene05063.t1 | MTR_3g092090 | 53.523 | 667 | 274 | 7 | 2 | 652 | 6 | 652 | 0.0 | 721 |
| MS.gene05063.t1 | MTR_1g007580 | 51.407 | 675 | 295 | 9 | 19 | 666 | 4 | 672 | 0.0 | 702 |
| MS.gene05063.t1 | MTR_0312s0020 | 51.131 | 663 | 301 | 7 | 20 | 666 | 17 | 672 | 0.0 | 700 |
| MS.gene05063.t1 | MTR_1g007540 | 51.131 | 663 | 301 | 7 | 20 | 666 | 17 | 672 | 0.0 | 700 |
| MS.gene05063.t1 | MTR_1g077840 | 50.453 | 662 | 305 | 7 | 20 | 665 | 25 | 679 | 0.0 | 699 |
| MS.gene05063.t1 | MTR_5g091615 | 87.500 | 160 | 20 | 0 | 515 | 674 | 59 | 218 | 2.58e-88 | 278 |
| MS.gene05063.t1 | MTR_1626s0010 | 50.847 | 236 | 112 | 2 | 207 | 442 | 4 | 235 | 1.47e-80 | 256 |
| MS.gene05063.t1 | MTR_0312s0050 | 49.593 | 123 | 51 | 3 | 16 | 127 | 1 | 123 | 4.81e-32 | 120 |
| MS.gene05063.t1 | MTR_2g083230 | 82.609 | 46 | 5 | 1 | 129 | 171 | 34 | 79 | 4.76e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05063.t1 | AT1G65730 | 75.744 | 672 | 142 | 7 | 21 | 676 | 19 | 685 | 0.0 | 1035 |
| MS.gene05063.t1 | AT3G17650 | 71.278 | 665 | 174 | 4 | 29 | 676 | 46 | 710 | 0.0 | 946 |
| MS.gene05063.t1 | AT3G17650 | 71.278 | 665 | 174 | 4 | 29 | 676 | 46 | 710 | 0.0 | 946 |
| MS.gene05063.t1 | AT1G48370 | 70.721 | 666 | 177 | 4 | 29 | 676 | 55 | 720 | 0.0 | 929 |
| MS.gene05063.t1 | AT3G27020 | 57.357 | 666 | 263 | 6 | 23 | 669 | 13 | 676 | 0.0 | 769 |
| MS.gene05063.t1 | AT1G48370 | 69.300 | 557 | 153 | 4 | 138 | 676 | 1 | 557 | 0.0 | 754 |
| MS.gene05063.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 744 |
| MS.gene05063.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 744 |
| MS.gene05063.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 744 |
| MS.gene05063.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 744 |
| MS.gene05063.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 744 |
| MS.gene05063.t1 | AT5G41000 | 54.799 | 646 | 273 | 5 | 35 | 663 | 24 | 667 | 0.0 | 727 |
| MS.gene05063.t1 | AT4G24120 | 52.941 | 680 | 289 | 7 | 1 | 665 | 9 | 672 | 0.0 | 725 |
| MS.gene05063.t1 | AT5G24380 | 52.959 | 659 | 288 | 6 | 22 | 663 | 7 | 660 | 0.0 | 713 |
| MS.gene05063.t1 | AT5G41000 | 52.632 | 646 | 262 | 6 | 35 | 663 | 24 | 642 | 0.0 | 687 |
| MS.gene05063.t1 | AT5G53550 | 58.058 | 515 | 198 | 4 | 160 | 664 | 1 | 507 | 0.0 | 603 |
| MS.gene05063.t1 | AT5G41000 | 53.955 | 493 | 214 | 4 | 182 | 663 | 1 | 491 | 0.0 | 554 |
| MS.gene05063.t1 | AT5G45450 | 65.138 | 218 | 70 | 1 | 459 | 676 | 1 | 212 | 9.17e-96 | 294 |
Find 159 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTTGTTGTTAGCTTTCT+TGG | 0.055871 | 3.4:-65728321 | MS.gene05063:CDS |
| AATGTTTCTGCTGGGTTGTT+AGG | 0.216597 | 3.4:-65728751 | MS.gene05063:CDS |
| GAAGCTTGATATTGTTTATT+TGG | 0.238786 | 3.4:-65726231 | MS.gene05063:CDS |
| GTTCTTGGCACAACTCTTAT+AGG | 0.241739 | 3.4:-65727072 | MS.gene05063:CDS |
| GCTAAGGTTGATAAGTTCTT+AGG | 0.244541 | 3.4:-65726052 | MS.gene05063:CDS |
| GAGGAGATCTCTGTGGAAAA+AGG | 0.248700 | 3.4:-65728910 | MS.gene05063:CDS |
| ATGTTTGTGAGCCAAGTTAT+TGG | 0.272519 | 3.4:-65726574 | MS.gene05063:CDS |
| GCCGGTGCCATGATTATTAA+TGG | 0.276061 | 3.4:-65726361 | MS.gene05063:CDS |
| TACAACTTTGGGAAAGTTCT+TGG | 0.281237 | 3.4:-65727087 | MS.gene05063:CDS |
| TGATATGTGGAGATGGAATT+TGG | 0.283833 | 3.4:-65726153 | MS.gene05063:CDS |
| AACGAAATATTGGTTATATA+TGG | 0.289135 | 3.4:+65727549 | None:intergenic |
| ACCGATCAACAACGAAATAT+TGG | 0.300050 | 3.4:+65727539 | None:intergenic |
| CCCTCATGGTTCGCAATTGC+AGG | 0.302996 | 3.4:-65726922 | MS.gene05063:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 3.4:+65728670 | None:intergenic |
| CCTTCGTTGAATGTTTCTGC+TGG | 0.339721 | 3.4:-65728760 | MS.gene05063:CDS |
| AAATTAGCCATCTTCGCTAT+TGG | 0.346002 | 3.4:-65726736 | MS.gene05063:CDS |
| TGATCGGTGGAATTCTTTCA+TGG | 0.350906 | 3.4:-65727524 | MS.gene05063:CDS |
| CCATCTTCGCTATTGGTGCT+TGG | 0.352652 | 3.4:-65726729 | MS.gene05063:CDS |
| TTATTTGGCAGAAGGTTGAT+AGG | 0.352931 | 3.4:-65726216 | MS.gene05063:CDS |
| AAGTAGCTTCCAATGTAAAA+TGG | 0.358086 | 3.4:+65726274 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 3.4:-65727120 | MS.gene05063:CDS |
| TTTGCAAACTTCCCCACATT+TGG | 0.363476 | 3.4:-65727871 | MS.gene05063:CDS |
| AGGGTTAAGGCTGATGCATT+TGG | 0.365863 | 3.4:-65726196 | MS.gene05063:CDS |
| TAGGTTTGTATAAACAATTA+TGG | 0.370836 | 3.4:-65727053 | MS.gene05063:CDS |
| GGGTTTGGTAGCTACTTGTT+TGG | 0.371080 | 3.4:-65728423 | MS.gene05063:CDS |
| GACAAGAATTTCATGCAAAT+AGG | 0.377015 | 3.4:+65726088 | None:intergenic |
| TGGCTATTCTACAACGCTTT+CGG | 0.377582 | 3.4:-65726514 | MS.gene05063:CDS |
| GTAGGGGAGAGAGGAGCATT+TGG | 0.378591 | 3.4:+65726997 | None:intergenic |
| GACACCACATGCTGCTAAAC+CGG | 0.383267 | 3.4:+65726678 | None:intergenic |
| TGGCTCACAAACATGGATTT+CGG | 0.390640 | 3.4:+65726583 | None:intergenic |
| GCCAATGATGTTAAGAGTCT+TGG | 0.398551 | 3.4:-65728366 | MS.gene05063:CDS |
| GTGATGGTCTATACAACTTT+GGG | 0.399347 | 3.4:-65727098 | MS.gene05063:CDS |
| CTTGCTTGTGTAGGTGGGTT+TGG | 0.399991 | 3.4:-65728438 | MS.gene05063:intron |
| GGTGATGGTCTATACAACTT+TGG | 0.401168 | 3.4:-65727099 | MS.gene05063:CDS |
| GTTTGGCACCTTCTGATGTA+TGG | 0.401190 | 3.4:+65727992 | None:intergenic |
| ATGAAGTTGAATCTCACAAC+TGG | 0.401497 | 3.4:-65728790 | MS.gene05063:CDS |
| TTCGCTATTGGTGCTTGGGC+AGG | 0.404021 | 3.4:-65726724 | MS.gene05063:CDS |
| CTACAACGCTTTCGGTACTC+TGG | 0.404901 | 3.4:-65726506 | MS.gene05063:CDS |
| TTTCGATAAACGAGGGCGTT+AGG | 0.407080 | 3.4:+65726457 | None:intergenic |
| TGTTCCTACGTGGCAGAAAC+AGG | 0.407557 | 3.4:-65728872 | MS.gene05063:CDS |
| CTGCTTTGTTTGAGATCAGC+AGG | 0.407652 | 3.4:+65727456 | None:intergenic |
| CATCTTCGCTATTGGTGCTT+GGG | 0.418097 | 3.4:-65726728 | MS.gene05063:CDS |
| GATGTTAAGAGTCTTGGTTT+AGG | 0.418370 | 3.4:-65728360 | MS.gene05063:CDS |
| GCAGAAGGTTGATAGGGTTA+AGG | 0.423744 | 3.4:-65726209 | MS.gene05063:CDS |
| CTTATGCAAGACTTCAAAAC+AGG | 0.423970 | 3.4:-65726625 | MS.gene05063:CDS |
| GGCAGAAACAGGTTACGGTT+AGG | 0.425396 | 3.4:-65728861 | MS.gene05063:CDS |
| CGGCATGGCTGCGGTTGCAC+CGG | 0.427222 | 3.4:-65728953 | MS.gene05063:CDS |
| TGGTCCCTTGCATCGACTTA+CGG | 0.438370 | 3.4:-65726760 | MS.gene05063:CDS |
| ATGAGGGGATTTGATCTTTG+AGG | 0.439237 | 3.4:+65726938 | None:intergenic |
| GCAGAAACAGGTTACGGTTA+GGG | 0.440923 | 3.4:-65728860 | MS.gene05063:CDS |
| ACCAAGACTCTTAACATCAT+TGG | 0.446254 | 3.4:+65728365 | None:intergenic |
| ATGTTTCTGCTGGGTTGTTA+GGG | 0.449011 | 3.4:-65728750 | MS.gene05063:CDS |
| CCATAGCAGTTCCAATAACT+TGG | 0.450305 | 3.4:+65726563 | None:intergenic |
| GATCGGTGGAATTCTTTCAT+GGG | 0.451529 | 3.4:-65727523 | MS.gene05063:CDS |
| TTTGGATCAGCTGTTGCGTC+CGG | 0.451755 | 3.4:-65726178 | MS.gene05063:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.451917 | 3.4:-65728637 | MS.gene05063:CDS |
| CAACTATATTCCTGTTCCTA+TGG | 0.451960 | 3.4:-65726308 | MS.gene05063:CDS |
| GGTGTCATGTGGCCTCTCAT+TGG | 0.456041 | 3.4:-65727501 | MS.gene05063:CDS |
| TTAAGAGTCTTGGTTTAGGA+TGG | 0.456468 | 3.4:-65728356 | MS.gene05063:CDS |
| TATCGAAACATGGCTATACT+AGG | 0.461201 | 3.4:-65726442 | MS.gene05063:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.462139 | 3.4:-65727438 | MS.gene05063:CDS |
| CCAAGCACCAATAGCGAAGA+TGG | 0.462172 | 3.4:+65726729 | None:intergenic |
| AGGGCGTTAGGTGCAGAGTA+TGG | 0.462575 | 3.4:+65726469 | None:intergenic |
| ACCAGCTTTCTCAAGCAACT+TGG | 0.467323 | 3.4:+65728705 | None:intergenic |
| CCAAGTTATTGGAACTGCTA+TGG | 0.469421 | 3.4:-65726563 | MS.gene05063:CDS |
| CTTCGTTGAATGTTTCTGCT+GGG | 0.472472 | 3.4:-65728759 | MS.gene05063:CDS |
| CTCAAACAAAGCAGCTTACA+TGG | 0.473967 | 3.4:-65727447 | MS.gene05063:CDS |
| ACCAATATTTCGTTGTTGAT+CGG | 0.478557 | 3.4:-65727540 | MS.gene05063:CDS |
| GCCGTGGCTTTCGACGTCAT+AGG | 0.479696 | 3.4:+65728972 | None:intergenic |
| TTCGGTACTCTGGGTCAACC+TGG | 0.487404 | 3.4:-65726496 | MS.gene05063:CDS |
| CTTTAGCTGGTGGAAAATGA+AGG | 0.487926 | 3.4:+65726861 | None:intergenic |
| AAACTTCCCCACATTTGGTC+TGG | 0.492239 | 3.4:-65727866 | MS.gene05063:CDS |
| TGATGTAATACCACTTTAGC+TGG | 0.492701 | 3.4:+65726848 | None:intergenic |
| CCAAATATTGCAAAACAAGC+TGG | 0.494078 | 3.4:-65728393 | MS.gene05063:CDS |
| CAAGTTATTGGAACTGCTAT+GGG | 0.494211 | 3.4:-65726562 | MS.gene05063:CDS |
| GAGAGGAGCATTTGGATCAT+CGG | 0.497596 | 3.4:+65727005 | None:intergenic |
| GCTTGGGCAGGTGCGTCTAA+CGG | 0.499684 | 3.4:-65726712 | MS.gene05063:CDS |
| TTCTTTCATGGGGTGTCATG+TGG | 0.500744 | 3.4:-65727512 | MS.gene05063:CDS |
| TCCATCTCCACATATCAAAC+CGG | 0.501705 | 3.4:+65726159 | None:intergenic |
| ATAGCCATAGCCATAGGAAC+AGG | 0.504745 | 3.4:+65726298 | None:intergenic |
| GATATTGTTTATTTGGCAGA+AGG | 0.507191 | 3.4:-65726224 | MS.gene05063:CDS |
| TTTGCTATTGATATGTGTGT+TGG | 0.507636 | 3.4:-65726253 | MS.gene05063:CDS |
| AATAACAGTATTCTCCTGTC+TGG | 0.507862 | 3.4:+65728663 | None:intergenic |
| CCGTGGCTTTCGACGTCATA+GGG | 0.509154 | 3.4:+65728973 | None:intergenic |
| TATTCCTGTTCCTATGGCTA+TGG | 0.510164 | 3.4:-65726302 | MS.gene05063:CDS |
| CGAAAGCCACGGCATGGCTG+CGG | 0.511258 | 3.4:-65728962 | MS.gene05063:CDS |
| TGTCGTCGAATGAAAGTGTA+GGG | 0.513370 | 3.4:+65726980 | None:intergenic |
| TGAGCTGTTGCGGTACCACT+TGG | 0.516027 | 3.4:+65728030 | None:intergenic |
| TCTAACGGCGGTGTCCTAGC+CGG | 0.520318 | 3.4:-65726697 | MS.gene05063:CDS |
| TATTTGGCAGAAGGTTGATA+GGG | 0.521362 | 3.4:-65726215 | MS.gene05063:CDS |
| GCGAACACCATTAATAATCA+TGG | 0.526943 | 3.4:+65726354 | None:intergenic |
| GAAAATGAAGGGGATGGTAA+TGG | 0.530222 | 3.4:+65726873 | None:intergenic |
| AATAACTTGGCTCACAAACA+TGG | 0.530485 | 3.4:+65726576 | None:intergenic |
| GTTGCGTCCGGTTTGATATG+TGG | 0.530851 | 3.4:-65726166 | MS.gene05063:CDS |
| TTCAGTGGTTCCACTCCGAA+AGG | 0.534003 | 3.4:-65728292 | MS.gene05063:intron |
| AATATTTCGTTGTTGATCGG+TGG | 0.535914 | 3.4:-65727537 | MS.gene05063:CDS |
| CATAGGAACAGGAATATAGT+TGG | 0.536080 | 3.4:+65726309 | None:intergenic |
| TGCCTATGGTTGTGGACTAA+CGG | 0.537350 | 3.4:-65726785 | MS.gene05063:CDS |
| AATGGTGTTCGCGACTATGT+CGG | 0.539051 | 3.4:-65726343 | MS.gene05063:CDS |
| CGCCCTCGTTTATCGAAACA+TGG | 0.542039 | 3.4:-65726452 | MS.gene05063:CDS |
| AATGAAAGTGTAGGGGAGAG+AGG | 0.542386 | 3.4:+65726988 | None:intergenic |
| ACCAAGTTGCTTGAGAAAGC+TGG | 0.544740 | 3.4:-65728706 | MS.gene05063:CDS |
| ACCATTAATAATCATGGCAC+CGG | 0.545307 | 3.4:+65726360 | None:intergenic |
| GTGCAACCGCAGCCATGCCG+TGG | 0.547128 | 3.4:+65728956 | None:intergenic |
| GCATTGCAAAAGGCTAGTGC+AGG | 0.548633 | 3.4:+65726805 | None:intergenic |
| ATAGGCTTCCAGACCAAATG+TGG | 0.549567 | 3.4:+65727858 | None:intergenic |
| TACAACGCTTTCGGTACTCT+GGG | 0.552026 | 3.4:-65726505 | MS.gene05063:CDS |
| TTGATCTTTGAGGAACATCT+CGG | 0.554704 | 3.4:+65726948 | None:intergenic |
| TTCAGTGCTAGTGATGATTG+TGG | 0.556606 | 3.4:-65727895 | MS.gene05063:CDS |
| ATGGTTGTGGACTAACGGAT+TGG | 0.556934 | 3.4:-65726780 | MS.gene05063:CDS |
| ATTTGTGAGTCTCATGTTGT+CGG | 0.557992 | 3.4:-65728833 | MS.gene05063:CDS |
| ACAACCATAGGCATTGCAAA+AGG | 0.564312 | 3.4:+65726795 | None:intergenic |
| AACAGTTTCCATACATCAGA+AGG | 0.565961 | 3.4:-65728000 | MS.gene05063:intron |
| ATCGGTGGAATTCTTTCATG+GGG | 0.567187 | 3.4:-65727522 | MS.gene05063:CDS |
| TTGTCGTCGAATGAAAGTGT+AGG | 0.575329 | 3.4:+65726979 | None:intergenic |
| GCAAGAGCAAGAAAAGAGCT+AGG | 0.577753 | 3.4:+65726124 | None:intergenic |
| CTGCAATTGCGAACCATGAG+GGG | 0.583286 | 3.4:+65726923 | None:intergenic |
| ATCCGTTAGTCCACAACCAT+AGG | 0.586179 | 3.4:+65726783 | None:intergenic |
| GGTGCAGAGTATGGTGAACC+AGG | 0.586451 | 3.4:+65726478 | None:intergenic |
| TTTAGCTGGTGGAAAATGAA+GGG | 0.586752 | 3.4:+65726862 | None:intergenic |
| CAAAACAGGTTACATGACAA+TGG | 0.590728 | 3.4:-65726611 | MS.gene05063:CDS |
| AAGAATTTCATGCAAATAGG+TGG | 0.591699 | 3.4:+65726091 | None:intergenic |
| GTCAAGAGCAGCAAATGCTA+AGG | 0.594984 | 3.4:-65726068 | MS.gene05063:CDS |
| AATGGTATAGCCATAGCCAT+AGG | 0.595250 | 3.4:+65726292 | None:intergenic |
| CCCTATGACGTCGAAAGCCA+CGG | 0.598986 | 3.4:-65728973 | MS.gene05063:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 3.4:-65727114 | MS.gene05063:CDS |
| AAACATGGCTATACTAGGTG+TGG | 0.601524 | 3.4:-65726437 | MS.gene05063:CDS |
| CCTGCAATTGCGAACCATGA+GGG | 0.604092 | 3.4:+65726922 | None:intergenic |
| TCCGGTTTGATATGTGGAGA+TGG | 0.612716 | 3.4:-65726160 | MS.gene05063:CDS |
| TACGTGGCAGAAACAGGTTA+CGG | 0.614426 | 3.4:-65728866 | MS.gene05063:CDS |
| TCAAAGATCAAATCCCCTCA+TGG | 0.616210 | 3.4:-65726936 | MS.gene05063:CDS |
| TGACGTCGAAAGCCACGGCA+TGG | 0.618397 | 3.4:-65728968 | MS.gene05063:CDS |
| AGTTGCTTGAGAAAGCTGGT+TGG | 0.620575 | 3.4:-65728702 | MS.gene05063:CDS |
| CACATGCTGCTAAACCGGCT+AGG | 0.621749 | 3.4:+65726683 | None:intergenic |
| TGCTTTGTTTGAGATCAGCA+GGG | 0.627385 | 3.4:+65727457 | None:intergenic |
| TGTAATACCACTTTAGCTGG+TGG | 0.629875 | 3.4:+65726851 | None:intergenic |
| ATGGCTATACTAGGTGTGGA+CGG | 0.647638 | 3.4:-65726433 | MS.gene05063:CDS |
| TAGGCTTCCAGACCAAATGT+GGG | 0.650528 | 3.4:+65727859 | None:intergenic |
| TTAGCTGGTGGAAAATGAAG+GGG | 0.653662 | 3.4:+65726863 | None:intergenic |
| CTGGTGGAAAATGAAGGGGA+TGG | 0.654258 | 3.4:+65726867 | None:intergenic |
| TGGGCAGGTGCGTCTAACGG+CGG | 0.655359 | 3.4:-65726709 | MS.gene05063:CDS |
| GTTGATAAGATGAGCTGTTG+CGG | 0.660296 | 3.4:+65728020 | None:intergenic |
| AGTTGTTCATCATTCAACAC+CGG | 0.662303 | 3.4:+65728934 | None:intergenic |
| GCCTGCAATTGCGAACCATG+AGG | 0.668031 | 3.4:+65726921 | None:intergenic |
| TAGTACTGTACCTTTCGGAG+TGG | 0.669012 | 3.4:+65728282 | None:intergenic |
| TGAAGTTGAATCTCACAACT+GGG | 0.670966 | 3.4:-65728789 | MS.gene05063:CDS |
| GTTGAATGATGAACAACTTG+AGG | 0.685365 | 3.4:-65728929 | MS.gene05063:CDS |
| TAGCCATGTTTCGATAAACG+AGG | 0.685399 | 3.4:+65726449 | None:intergenic |
| TTCAAACTGACATATCCAAG+TGG | 0.687798 | 3.4:-65728045 | MS.gene05063:CDS |
| TAGAATAGCCAGAAAACACA+CGG | 0.691145 | 3.4:+65726526 | None:intergenic |
| ACAACTTGAGGAGATCTCTG+TGG | 0.691473 | 3.4:-65728917 | MS.gene05063:CDS |
| GCTAGTGGAATTGCATTCAG+CGG | 0.695424 | 3.4:-65728622 | MS.gene05063:intron |
| CTAGCCGGTTTAGCAGCATG+TGG | 0.697720 | 3.4:-65726682 | MS.gene05063:CDS |
| AGCCATGTTTCGATAAACGA+GGG | 0.699106 | 3.4:+65726450 | None:intergenic |
| CCAGCAGAAACATTCAACGA+AGG | 0.700492 | 3.4:+65728760 | None:intergenic |
| AGGCTTCCAGACCAAATGTG+GGG | 0.704515 | 3.4:+65727860 | None:intergenic |
| GTCGTCGAATGAAAGTGTAG+GGG | 0.705258 | 3.4:+65726981 | None:intergenic |
| GTAACCTGTTTCTGCCACGT+AGG | 0.720663 | 3.4:+65728868 | None:intergenic |
| AAGGAACATCTGTTCCTACG+TGG | 0.720715 | 3.4:-65728882 | MS.gene05063:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGAAAGAATTTAAAA+TGG | - | chr3.4:65727229-65727248 | MS.gene05063:intron | 10.0% |
| !! | AACATCAAATTAAAACTAAA+TGG | + | chr3.4:65726938-65726957 | None:intergenic | 15.0% |
| !! | TATTATTTAATGTACATAAC+AGG | - | chr3.4:65727410-65727429 | MS.gene05063:intron | 15.0% |
| !! | AAAGTATACTTACAAAAAAG+TGG | + | chr3.4:65727701-65727720 | None:intergenic | 20.0% |
| !! | TAAATGTTAGCTAAAAGAAA+AGG | + | chr3.4:65727392-65727411 | None:intergenic | 20.0% |
| !! | TAGGTTTGTATAAACAATTA+TGG | - | chr3.4:65727977-65727996 | MS.gene05063:intron | 20.0% |
| !!! | AACGAAATATTGGTTATATA+TGG | + | chr3.4:65727484-65727503 | None:intergenic | 20.0% |
| !!! | AACTTGTTCTAAAAACTATT+AGG | + | chr3.4:65726493-65726512 | None:intergenic | 20.0% |
| !!! | ACTTGTTCTAAAAACTATTA+GGG | + | chr3.4:65726492-65726511 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGTAAGTATACTT+TGG | - | chr3.4:65727700-65727719 | MS.gene05063:intron | 20.0% |
| !!! | GGGTTAAATTGATTTTATTA+AGG | + | chr3.4:65726798-65726817 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATTGATTGAACA+AGG | + | chr3.4:65726823-65726842 | None:intergenic | 20.0% |
| ! | AGATTTGTCAACAACAAATA+AGG | + | chr3.4:65726559-65726578 | None:intergenic | 25.0% |
| ! | CAACTTAAAACACAGTAAAT+TGG | - | chr3.4:65727760-65727779 | MS.gene05063:intron | 25.0% |
| ! | CAATAGAATACATTATCAAC+CGG | + | chr3.4:65727850-65727869 | None:intergenic | 25.0% |
| ! | GAAGCTTGATATTGTTTATT+TGG | - | chr3.4:65728799-65728818 | MS.gene05063:CDS | 25.0% |
| ! | TAAAACAATTGAACATGACT+TGG | - | chr3.4:65726836-65726855 | MS.gene05063:CDS | 25.0% |
| ! | TTAAATTGATTGAACAAGGA+CGG | + | chr3.4:65726819-65726838 | None:intergenic | 25.0% |
| !!! | TGAATCGATTTTTAAAACGT+GGG | - | chr3.4:65726880-65726899 | MS.gene05063:CDS | 25.0% |
| !!! | TTGAATCGATTTTTAAAACG+TGG | - | chr3.4:65726879-65726898 | MS.gene05063:CDS | 25.0% |
| AAAAACTGCATCATACTTTG+CGG | - | chr3.4:65728636-65728655 | MS.gene05063:CDS | 30.0% | |
| AACAATCATAATCTGCAACA+AGG | + | chr3.4:65726962-65726981 | None:intergenic | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | - | chr3.4:65727288-65727307 | MS.gene05063:intron | 30.0% | |
| AAGAATTTCATGCAAATAGG+TGG | + | chr3.4:65728942-65728961 | None:intergenic | 30.0% | |
| AAGTAGCTTCCAATGTAAAA+TGG | + | chr3.4:65728759-65728778 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | - | chr3.4:65727789-65727808 | MS.gene05063:intron | 30.0% | |
| ACCAATATTTCGTTGTTGAT+CGG | - | chr3.4:65727490-65727509 | MS.gene05063:CDS | 30.0% | |
| AGTCAAGTATTAAACTGAAG+TGG | + | chr3.4:65726446-65726465 | None:intergenic | 30.0% | |
| GACAAGAATTTCATGCAAAT+AGG | + | chr3.4:65728945-65728964 | None:intergenic | 30.0% | |
| GATATTGTTTATTTGGCAGA+AGG | - | chr3.4:65728806-65728825 | MS.gene05063:CDS | 30.0% | |
| GATTGAAACAAGTACAAAAC+TGG | - | chr3.4:65727782-65727801 | MS.gene05063:intron | 30.0% | |
| TAAATTGATTGAACAAGGAC+GGG | + | chr3.4:65726818-65726837 | None:intergenic | 30.0% | |
| TTGTATTCTCTCTAAACTAC+AGG | - | chr3.4:65727882-65727901 | MS.gene05063:CDS | 30.0% | |
| ! | ATGGCTATACCATTTTACAT+TGG | - | chr3.4:65728747-65728766 | MS.gene05063:CDS | 30.0% |
| ! | CAAAGTATGATGCAGTTTTT+CGG | + | chr3.4:65728636-65728655 | None:intergenic | 30.0% |
| ! | TCTAAACTACAGGTTTTCAT+AGG | - | chr3.4:65727892-65727911 | MS.gene05063:CDS | 30.0% |
| ! | TTTGATAGTACTGTACCTTT+CGG | + | chr3.4:65726756-65726775 | None:intergenic | 30.0% |
| !! | CGGTTGATAATGTATTCTAT+TGG | - | chr3.4:65727848-65727867 | MS.gene05063:intron | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | - | chr3.4:65726709-65726728 | MS.gene05063:CDS | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | - | chr3.4:65728777-65728796 | MS.gene05063:CDS | 30.0% |
| !!! | TAGATCTTTTTCAATGTGAC+CGG | - | chr3.4:65727828-65727847 | MS.gene05063:intron | 30.0% |
| AAATTAGCCATCTTCGCTAT+TGG | - | chr3.4:65728294-65728313 | MS.gene05063:CDS | 35.0% | |
| AACAGTTTCCATACATCAGA+AGG | - | chr3.4:65727030-65727049 | MS.gene05063:CDS | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | + | chr3.4:65726370-65726389 | None:intergenic | 35.0% | |
| AATAACTTGGCTCACAAACA+TGG | + | chr3.4:65728457-65728476 | None:intergenic | 35.0% | |
| AATATTTCGTTGTTGATCGG+TGG | - | chr3.4:65727493-65727512 | MS.gene05063:CDS | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | + | chr3.4:65726668-65726687 | None:intergenic | 35.0% | |
| ACCATTAATAATCATGGCAC+CGG | + | chr3.4:65728673-65728692 | None:intergenic | 35.0% | |
| ACCGATCAACAACGAAATAT+TGG | + | chr3.4:65727494-65727513 | None:intergenic | 35.0% | |
| AGTTGTTCATCATTCAACAC+CGG | + | chr3.4:65726099-65726118 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | - | chr3.4:65727916-65727935 | MS.gene05063:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | - | chr3.4:65727910-65727929 | MS.gene05063:CDS | 35.0% | |
| ATGAAGTTGAATCTCACAAC+TGG | - | chr3.4:65726240-65726259 | MS.gene05063:CDS | 35.0% | |
| ATGTTTGTGAGCCAAGTTAT+TGG | - | chr3.4:65728456-65728475 | MS.gene05063:intron | 35.0% | |
| ATTTGTGAGTCTCATGTTGT+CGG | - | chr3.4:65726197-65726216 | MS.gene05063:CDS | 35.0% | |
| CAAAACAGGTTACATGACAA+TGG | - | chr3.4:65728419-65728438 | MS.gene05063:CDS | 35.0% | |
| CAACTATATTCCTGTTCCTA+TGG | - | chr3.4:65728722-65728741 | MS.gene05063:CDS | 35.0% | |
| CAAGTTATTGGAACTGCTAT+GGG | - | chr3.4:65728468-65728487 | MS.gene05063:intron | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | + | chr3.4:65727293-65727312 | None:intergenic | 35.0% | |
| CATAGGAACAGGAATATAGT+TGG | + | chr3.4:65728724-65728743 | None:intergenic | 35.0% | |
| CCAAATATTGCAAAACAAGC+TGG | - | chr3.4:65726637-65726656 | MS.gene05063:CDS | 35.0% | |
| CTTATGCAAGACTTCAAAAC+AGG | - | chr3.4:65728405-65728424 | MS.gene05063:CDS | 35.0% | |
| GAACATAGAGGTTTCAGTTT+CGG | + | chr3.4:65727281-65727300 | None:intergenic | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | - | chr3.4:65726670-65726689 | MS.gene05063:CDS | 35.0% | |
| GCGAACACCATTAATAATCA+TGG | + | chr3.4:65728679-65728698 | None:intergenic | 35.0% | |
| GTGATGGTCTATACAACTTT+GGG | - | chr3.4:65727932-65727951 | MS.gene05063:CDS | 35.0% | |
| GTTGAATGATGAACAACTTG+AGG | - | chr3.4:65726101-65726120 | MS.gene05063:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | + | chr3.4:65727058-65727077 | None:intergenic | 35.0% | |
| TAGAATAGCCAGAAAACACA+CGG | + | chr3.4:65728507-65728526 | None:intergenic | 35.0% | |
| TATCGAAACATGGCTATACT+AGG | - | chr3.4:65728588-65728607 | MS.gene05063:intron | 35.0% | |
| TGAAGTTGAATCTCACAACT+GGG | - | chr3.4:65726241-65726260 | MS.gene05063:CDS | 35.0% | |
| TGATATGTGGAGATGGAATT+TGG | - | chr3.4:65728877-65728896 | MS.gene05063:CDS | 35.0% | |
| TGATGTAATACCACTTTAGC+TGG | + | chr3.4:65728185-65728204 | None:intergenic | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | - | chr3.4:65726674-65726693 | MS.gene05063:CDS | 35.0% | |
| TTCAAACTGACATATCCAAG+TGG | - | chr3.4:65726985-65727004 | MS.gene05063:CDS | 35.0% | |
| TTTAGCTGGTGGAAAATGAA+GGG | + | chr3.4:65728171-65728190 | None:intergenic | 35.0% | |
| ! | ATTTTTCTGCAACCTATGTG+GGG | - | chr3.4:65727443-65727462 | MS.gene05063:CDS | 35.0% |
| ! | GATTTTTCTGCAACCTATGT+GGG | - | chr3.4:65727442-65727461 | MS.gene05063:CDS | 35.0% |
| ! | GGTTTTTCTTTGTGAAGACA+TGG | - | chr3.4:65726301-65726320 | MS.gene05063:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | - | chr3.4:65726353-65726372 | MS.gene05063:CDS | 35.0% |
| ! | TACAACTTTGGGAAAGTTCT+TGG | - | chr3.4:65727943-65727962 | MS.gene05063:CDS | 35.0% |
| ! | TGATTTTTCTGCAACCTATG+TGG | - | chr3.4:65727441-65727460 | MS.gene05063:CDS | 35.0% |
| ! | TTATTTGGCAGAAGGTTGAT+AGG | - | chr3.4:65728814-65728833 | MS.gene05063:CDS | 35.0% |
| ! | TTGATCTTTGAGGAACATCT+CGG | + | chr3.4:65728085-65728104 | None:intergenic | 35.0% |
| !! | AAGAAGCAAGTAAAAGCACT+TGG | - | chr3.4:65727066-65727085 | MS.gene05063:CDS | 35.0% |
| !! | GCTAAGGTTGATAAGTTCTT+AGG | - | chr3.4:65728978-65728997 | MS.gene05063:CDS | 35.0% |
| !! | TATTTGGCAGAAGGTTGATA+GGG | - | chr3.4:65728815-65728834 | MS.gene05063:CDS | 35.0% |
| !! | TTGGTGCTAAAAAAGGAGAT+TGG | - | chr3.4:65727548-65727567 | MS.gene05063:CDS | 35.0% |
| !!! | AGTCACGTACTTGTTTTGAT+AGG | + | chr3.4:65727193-65727212 | None:intergenic | 35.0% |
| !!! | CCAGCTTGTTTTGCAATATT+TGG | + | chr3.4:65726640-65726659 | None:intergenic | 35.0% |
| !!! | CGATTTTTAAAACGTGGGAT+GGG | - | chr3.4:65726885-65726904 | MS.gene05063:CDS | 35.0% |
| !!! | CTTCTCCTTTAGCTTTTTGT+GGG | - | chr3.4:65727095-65727114 | MS.gene05063:CDS | 35.0% |
| !!! | TCGATTTTTAAAACGTGGGA+TGG | - | chr3.4:65726884-65726903 | MS.gene05063:CDS | 35.0% |
| !!! | TCTTCTCCTTTAGCTTTTTG+TGG | - | chr3.4:65727094-65727113 | MS.gene05063:CDS | 35.0% |
| !!! | TTCTCCTTTAGCTTTTTGTG+GGG | - | chr3.4:65727096-65727115 | MS.gene05063:CDS | 35.0% |
| AAACATGGCTATACTAGGTG+TGG | - | chr3.4:65728593-65728612 | MS.gene05063:intron | 40.0% | |
| AATGGTATAGCCATAGCCAT+AGG | + | chr3.4:65728741-65728760 | None:intergenic | 40.0% | |
| AGCCATGTTTCGATAAACGA+GGG | + | chr3.4:65728583-65728602 | None:intergenic | 40.0% | |
| AGGAGATCTCTGTGGAAAAA+GGG | - | chr3.4:65726121-65726140 | MS.gene05063:CDS | 40.0% | |
| ATAGAGGTTTCAGTTTCGGT+CGG | + | chr3.4:65727277-65727296 | None:intergenic | 40.0% | |
| ATCGGTGGAATTCTTTCATG+GGG | - | chr3.4:65727508-65727527 | MS.gene05063:CDS | 40.0% | |
| ATGAGGGGATTTGATCTTTG+AGG | + | chr3.4:65728095-65728114 | None:intergenic | 40.0% | |
| ATTTGCTTGCTTGTGTAGGT+GGG | - | chr3.4:65726587-65726606 | MS.gene05063:CDS | 40.0% | |
| CCAAGTTATTGGAACTGCTA+TGG | - | chr3.4:65728467-65728486 | MS.gene05063:intron | 40.0% | |
| CCATAGCAGTTCCAATAACT+TGG | + | chr3.4:65728470-65728489 | None:intergenic | 40.0% | |
| CTCAAACAAAGCAGCTTACA+TGG | - | chr3.4:65727583-65727602 | MS.gene05063:CDS | 40.0% | |
| CTTTAGCTGGTGGAAAATGA+AGG | + | chr3.4:65728172-65728191 | None:intergenic | 40.0% | |
| GAAAATGAAGGGGATGGTAA+TGG | + | chr3.4:65728160-65728179 | None:intergenic | 40.0% | |
| GAAACCCCACAAAAAGCTAA+AGG | + | chr3.4:65727103-65727122 | None:intergenic | 40.0% | |
| GATCGGTGGAATTCTTTCAT+GGG | - | chr3.4:65727507-65727526 | MS.gene05063:CDS | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | - | chr3.4:65726664-65726683 | MS.gene05063:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | + | chr3.4:65726363-65726382 | None:intergenic | 40.0% | |
| GTTCTTGGCACAACTCTTAT+AGG | - | chr3.4:65727958-65727977 | MS.gene05063:intron | 40.0% | |
| TAGCCATGTTTCGATAAACG+AGG | + | chr3.4:65728584-65728603 | None:intergenic | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | - | chr3.4:65728728-65728747 | MS.gene05063:CDS | 40.0% | |
| TCAAAGATCAAATCCCCTCA+TGG | - | chr3.4:65728094-65728113 | MS.gene05063:intron | 40.0% | |
| TCCATCTCCACATATCAAAC+CGG | + | chr3.4:65728874-65728893 | None:intergenic | 40.0% | |
| TCTGTGGAAAAAGGGTTTGA+AGG | - | chr3.4:65726129-65726148 | MS.gene05063:CDS | 40.0% | |
| TGATCGGTGGAATTCTTTCA+TGG | - | chr3.4:65727506-65727525 | MS.gene05063:CDS | 40.0% | |
| TGGCTATTCTACAACGCTTT+CGG | - | chr3.4:65728516-65728535 | MS.gene05063:intron | 40.0% | |
| TGGCTCACAAACATGGATTT+CGG | + | chr3.4:65728450-65728469 | None:intergenic | 40.0% | |
| TGTAATACCACTTTAGCTGG+TGG | + | chr3.4:65728182-65728201 | None:intergenic | 40.0% | |
| TTAGCTGGTGGAAAATGAAG+GGG | + | chr3.4:65728170-65728189 | None:intergenic | 40.0% | |
| TTCAGTGCTAGTGATGATTG+TGG | - | chr3.4:65727135-65727154 | MS.gene05063:intron | 40.0% | |
| TTTGCAAACTTCCCCACATT+TGG | - | chr3.4:65727159-65727178 | MS.gene05063:intron | 40.0% | |
| ! | AATGTTTCTGCTGGGTTGTT+AGG | - | chr3.4:65726279-65726298 | MS.gene05063:CDS | 40.0% |
| ! | ACAACCATAGGCATTGCAAA+AGG | + | chr3.4:65728238-65728257 | None:intergenic | 40.0% |
| ! | ATGTTTCTGCTGGGTTGTTA+GGG | - | chr3.4:65726280-65726299 | MS.gene05063:CDS | 40.0% |
| ! | ATTTTCCGTAAGTCGATGCA+AGG | + | chr3.4:65728278-65728297 | None:intergenic | 40.0% |
| ! | CACTAGCACTGAAAAACCAT+TGG | + | chr3.4:65727128-65727147 | None:intergenic | 40.0% |
| ! | CTTCGTTGAATGTTTCTGCT+GGG | - | chr3.4:65726271-65726290 | MS.gene05063:CDS | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | - | chr3.4:65726723-65726742 | MS.gene05063:CDS | 40.0% |
| ! | GGTGATGGTCTATACAACTT+TGG | - | chr3.4:65727931-65727950 | MS.gene05063:CDS | 40.0% |
| ! | GTTGATAAGATGAGCTGTTG+CGG | + | chr3.4:65727013-65727032 | None:intergenic | 40.0% |
| ! | TCATTTTCCACCAGCTAAAG+TGG | - | chr3.4:65728172-65728191 | MS.gene05063:intron | 40.0% |
| ! | TGTCGTCGAATGAAAGTGTA+GGG | + | chr3.4:65728053-65728072 | None:intergenic | 40.0% |
| ! | TTATATCGCCGTGTGTTTTC+TGG | - | chr3.4:65728496-65728515 | MS.gene05063:intron | 40.0% |
| ! | TTGTCGTCGAATGAAAGTGT+AGG | + | chr3.4:65728054-65728073 | None:intergenic | 40.0% |
| ! | TTTTCCGTAAGTCGATGCAA+GGG | + | chr3.4:65728277-65728296 | None:intergenic | 40.0% |
| ! | TTTTGCAATGCCTATGGTTG+TGG | - | chr3.4:65728237-65728256 | MS.gene05063:intron | 40.0% |
| ! | TTTTGTGGGGTTTCTTCCAA+TGG | - | chr3.4:65727109-65727128 | MS.gene05063:CDS | 40.0% |
| ! | TTTTTCTGCAACCTATGTGG+GGG | - | chr3.4:65727444-65727463 | MS.gene05063:CDS | 40.0% |
| !! | CCTCTCATTGGTGCTAAAAA+AGG | - | chr3.4:65727541-65727560 | MS.gene05063:CDS | 40.0% |
| !! | CTTGATTTGCTTGCTTGTGT+AGG | - | chr3.4:65726583-65726602 | MS.gene05063:CDS | 40.0% |
| !! | TGCTTTGTTTGAGATCAGCA+GGG | + | chr3.4:65727576-65727595 | None:intergenic | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAG+AGG | + | chr3.4:65727544-65727563 | None:intergenic | 40.0% |
| AAACTTCCCCACATTTGGTC+TGG | - | chr3.4:65727164-65727183 | MS.gene05063:intron | 45.0% | |
| AAGGAACATCTGTTCCTACG+TGG | - | chr3.4:65726148-65726167 | MS.gene05063:CDS | 45.0% | |
| AATGGTGTTCGCGACTATGT+CGG | - | chr3.4:65728687-65728706 | MS.gene05063:CDS | 45.0% | |
| ACAACTTGAGGAGATCTCTG+TGG | - | chr3.4:65726113-65726132 | MS.gene05063:CDS | 45.0% | |
| ACCAAGTTGCTTGAGAAAGC+TGG | - | chr3.4:65726324-65726343 | MS.gene05063:CDS | 45.0% | |
| ACCAGCTTTCTCAAGCAACT+TGG | + | chr3.4:65726328-65726347 | None:intergenic | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | - | chr3.4:65727592-65727611 | MS.gene05063:CDS | 45.0% | |
| AGGGTTAAGGCTGATGCATT+TGG | - | chr3.4:65728834-65728853 | MS.gene05063:CDS | 45.0% | |
| AGTTGCTTGAGAAAGCTGGT+TGG | - | chr3.4:65726328-65726347 | MS.gene05063:CDS | 45.0% | |
| ATAGCCATAGCCATAGGAAC+AGG | + | chr3.4:65728735-65728754 | None:intergenic | 45.0% | |
| ATAGGCTTCCAGACCAAATG+TGG | + | chr3.4:65727175-65727194 | None:intergenic | 45.0% | |
| ATCCGTTAGTCCACAACCAT+AGG | + | chr3.4:65728250-65728269 | None:intergenic | 45.0% | |
| ATGGCTATACTAGGTGTGGA+CGG | - | chr3.4:65728597-65728616 | MS.gene05063:intron | 45.0% | |
| CCAGCAGAAACATTCAACGA+AGG | + | chr3.4:65726273-65726292 | None:intergenic | 45.0% | |
| GAGGAGATCTCTGTGGAAAA+AGG | - | chr3.4:65726120-65726139 | MS.gene05063:CDS | 45.0% | |
| GCAAGAGCAAGAAAAGAGCT+AGG | + | chr3.4:65728909-65728928 | None:intergenic | 45.0% | |
| GCAGAAACAGGTTACGGTTA+GGG | - | chr3.4:65726170-65726189 | MS.gene05063:CDS | 45.0% | |
| GCTAGTGGAATTGCATTCAG+CGG | - | chr3.4:65726408-65726427 | MS.gene05063:CDS | 45.0% | |
| GTCAAGAGCAGCAAATGCTA+AGG | - | chr3.4:65728962-65728981 | MS.gene05063:CDS | 45.0% | |
| GTTTGGCACCTTCTGATGTA+TGG | + | chr3.4:65727041-65727060 | None:intergenic | 45.0% | |
| TACAACGCTTTCGGTACTCT+GGG | - | chr3.4:65728525-65728544 | MS.gene05063:intron | 45.0% | |
| TACGTGGCAGAAACAGGTTA+CGG | - | chr3.4:65726164-65726183 | MS.gene05063:CDS | 45.0% | |
| TAGGCTTCCAGACCAAATGT+GGG | + | chr3.4:65727174-65727193 | None:intergenic | 45.0% | |
| TAGTACTGTACCTTTCGGAG+TGG | + | chr3.4:65726751-65726770 | None:intergenic | 45.0% | |
| ! | AATGAAAGTGTAGGGGAGAG+AGG | + | chr3.4:65728045-65728064 | None:intergenic | 45.0% |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | - | chr3.4:65726393-65726412 | MS.gene05063:CDS | 45.0% |
| ! | AGCTCTTTTCTTGCTCTTGC+TGG | - | chr3.4:65728909-65728928 | MS.gene05063:CDS | 45.0% |
| ! | ATGGTTGTGGACTAACGGAT+TGG | - | chr3.4:65728250-65728269 | MS.gene05063:intron | 45.0% |
| ! | CATCTTCGCTATTGGTGCTT+GGG | - | chr3.4:65728302-65728321 | MS.gene05063:CDS | 45.0% |
| ! | CCTTCGTTGAATGTTTCTGC+TGG | - | chr3.4:65726270-65726289 | MS.gene05063:CDS | 45.0% |
| ! | GATTTGCTTGCTTGTGTAGG+TGG | - | chr3.4:65726586-65726605 | MS.gene05063:CDS | 45.0% |
| ! | GGGTTTGGTAGCTACTTGTT+TGG | - | chr3.4:65726607-65726626 | MS.gene05063:CDS | 45.0% |
| ! | GTCGTCGAATGAAAGTGTAG+GGG | + | chr3.4:65728052-65728071 | None:intergenic | 45.0% |
| ! | TCCGGTTTGATATGTGGAGA+TGG | - | chr3.4:65728870-65728889 | MS.gene05063:CDS | 45.0% |
| ! | TGCCTATGGTTGTGGACTAA+CGG | - | chr3.4:65728245-65728264 | MS.gene05063:intron | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | - | chr3.4:65727518-65727537 | MS.gene05063:CDS | 45.0% |
| !! | CTAGCCTTTTGCAATGCCTA+TGG | - | chr3.4:65728231-65728250 | MS.gene05063:intron | 45.0% |
| !! | CTGCTTTGTTTGAGATCAGC+AGG | + | chr3.4:65727577-65727596 | None:intergenic | 45.0% |
| !! | GAGAGGAGCATTTGGATCAT+CGG | + | chr3.4:65728028-65728047 | None:intergenic | 45.0% |
| !! | GCAGAAGGTTGATAGGGTTA+AGG | - | chr3.4:65728821-65728840 | MS.gene05063:CDS | 45.0% |
| !! | GCCGGTGCCATGATTATTAA+TGG | - | chr3.4:65728669-65728688 | MS.gene05063:CDS | 45.0% |
| !! | TTTCGATAAACGAGGGCGTT+AGG | + | chr3.4:65728576-65728595 | None:intergenic | 45.0% |
| !! | TTCATTAATTAATAAAATAA+AGG | + | chr3.4:65727218-65727237 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | - | chr3.4:65727647-65727666 | MS.gene05063:intron | 5.0% |
| AGGCTTCCAGACCAAATGTG+GGG | + | chr3.4:65727173-65727192 | None:intergenic | 50.0% | |
| CCAAGCACCAATAGCGAAGA+TGG | + | chr3.4:65728304-65728323 | None:intergenic | 50.0% | |
| CCTGCAATTGCGAACCATGA+GGG | + | chr3.4:65728111-65728130 | None:intergenic | 50.0% | |
| CGCCCTCGTTTATCGAAACA+TGG | - | chr3.4:65728578-65728597 | MS.gene05063:intron | 50.0% | |
| CTACAACGCTTTCGGTACTC+TGG | - | chr3.4:65728524-65728543 | MS.gene05063:intron | 50.0% | |
| CTGCAATTGCGAACCATGAG+GGG | + | chr3.4:65728110-65728129 | None:intergenic | 50.0% | |
| CTGGTGGAAAATGAAGGGGA+TGG | + | chr3.4:65728166-65728185 | None:intergenic | 50.0% | |
| GACACCACATGCTGCTAAAC+CGG | + | chr3.4:65728355-65728374 | None:intergenic | 50.0% | |
| GCATTGCAAAAGGCTAGTGC+AGG | + | chr3.4:65728228-65728247 | None:intergenic | 50.0% | |
| GGCAGAAACAGGTTACGGTT+AGG | - | chr3.4:65726169-65726188 | MS.gene05063:CDS | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | + | chr3.4:65727458-65727477 | None:intergenic | 50.0% | |
| TGTTCCTACGTGGCAGAAAC+AGG | - | chr3.4:65726158-65726177 | MS.gene05063:CDS | 50.0% | |
| TTCAGTGGTTCCACTCCGAA+AGG | - | chr3.4:65726738-65726757 | MS.gene05063:CDS | 50.0% | |
| TTTGGATCAGCTGTTGCGTC+CGG | - | chr3.4:65728852-65728871 | MS.gene05063:CDS | 50.0% | |
| ! | CCATCTTCGCTATTGGTGCT+TGG | - | chr3.4:65728301-65728320 | MS.gene05063:CDS | 50.0% |
| ! | CTTGCTTGTGTAGGTGGGTT+TGG | - | chr3.4:65726592-65726611 | MS.gene05063:CDS | 50.0% |
| ! | GTTGCGTCCGGTTTGATATG+TGG | - | chr3.4:65728864-65728883 | MS.gene05063:CDS | 50.0% |
| !! | GTAACCTGTTTCTGCCACGT+AGG | + | chr3.4:65726165-65726184 | None:intergenic | 50.0% |
| !! | TGGTCCCTTGCATCGACTTA+CGG | - | chr3.4:65728270-65728289 | MS.gene05063:intron | 50.0% |
| CACATGCTGCTAAACCGGCT+AGG | + | chr3.4:65728350-65728369 | None:intergenic | 55.0% | |
| CCCTATGACGTCGAAAGCCA+CGG | - | chr3.4:65726057-65726076 | MS.gene05063:CDS | 55.0% | |
| CCCTCATGGTTCGCAATTGC+AGG | - | chr3.4:65728108-65728127 | MS.gene05063:intron | 55.0% | |
| CCGTGGCTTTCGACGTCATA+GGG | + | chr3.4:65726060-65726079 | None:intergenic | 55.0% | |
| CTGCAACCTATGTGGGGGTT+GGG | - | chr3.4:65727449-65727468 | MS.gene05063:CDS | 55.0% | |
| GCCTGCAATTGCGAACCATG+AGG | + | chr3.4:65728112-65728131 | None:intergenic | 55.0% | |
| GGTGCAGAGTATGGTGAACC+AGG | + | chr3.4:65728555-65728574 | None:intergenic | 55.0% | |
| TCTGCAACCTATGTGGGGGT+TGG | - | chr3.4:65727448-65727467 | MS.gene05063:CDS | 55.0% | |
| TGAGCTGTTGCGGTACCACT+TGG | + | chr3.4:65727003-65727022 | None:intergenic | 55.0% | |
| TTCGGTACTCTGGGTCAACC+TGG | - | chr3.4:65728534-65728553 | MS.gene05063:intron | 55.0% | |
| ! | AGGGCGTTAGGTGCAGAGTA+TGG | + | chr3.4:65728564-65728583 | None:intergenic | 55.0% |
| ! | CTAGCCGGTTTAGCAGCATG+TGG | - | chr3.4:65728348-65728367 | MS.gene05063:CDS | 55.0% |
| ! | CTTTGCGGCGTGTTTTTCGC+CGG | - | chr3.4:65728651-65728670 | MS.gene05063:CDS | 55.0% |
| ! | GGTGTCATGTGGCCTCTCAT+TGG | - | chr3.4:65727529-65727548 | MS.gene05063:CDS | 55.0% |
| ! | TTCGCTATTGGTGCTTGGGC+AGG | - | chr3.4:65728306-65728325 | MS.gene05063:CDS | 55.0% |
| !! | GTAGGGGAGAGAGGAGCATT+TGG | + | chr3.4:65728036-65728055 | None:intergenic | 55.0% |
| GCCGTGGCTTTCGACGTCAT+AGG | + | chr3.4:65726061-65726080 | None:intergenic | 60.0% | |
| GCTTGGGCAGGTGCGTCTAA+CGG | - | chr3.4:65728318-65728337 | MS.gene05063:CDS | 60.0% | |
| TCTAACGGCGGTGTCCTAGC+CGG | - | chr3.4:65728333-65728352 | MS.gene05063:CDS | 60.0% | |
| TGACGTCGAAAGCCACGGCA+TGG | - | chr3.4:65726062-65726081 | MS.gene05063:CDS | 60.0% | |
| CGAAAGCCACGGCATGGCTG+CGG | - | chr3.4:65726068-65726087 | MS.gene05063:CDS | 65.0% | |
| TGGGCAGGTGCGTCTAACGG+CGG | - | chr3.4:65728321-65728340 | MS.gene05063:CDS | 65.0% | |
| CGGCATGGCTGCGGTTGCAC+CGG | - | chr3.4:65726077-65726096 | MS.gene05063:CDS | 70.0% | |
| GTGCAACCGCAGCCATGCCG+TGG | + | chr3.4:65726077-65726096 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 65726045 | 65729007 | 65726045 | ID=MS.gene05063 |
| chr3.4 | mRNA | 65726045 | 65729007 | 65726045 | ID=MS.gene05063.t1;Parent=MS.gene05063 |
| chr3.4 | exon | 65728623 | 65729007 | 65728623 | ID=MS.gene05063.t1.exon1;Parent=MS.gene05063.t1 |
| chr3.4 | CDS | 65728623 | 65729007 | 65728623 | ID=cds.MS.gene05063.t1;Parent=MS.gene05063.t1 |
| chr3.4 | exon | 65728293 | 65728447 | 65728293 | ID=MS.gene05063.t1.exon2;Parent=MS.gene05063.t1 |
| chr3.4 | CDS | 65728293 | 65728447 | 65728293 | ID=cds.MS.gene05063.t1;Parent=MS.gene05063.t1 |
| chr3.4 | exon | 65728001 | 65728082 | 65728001 | ID=MS.gene05063.t1.exon3;Parent=MS.gene05063.t1 |
| chr3.4 | CDS | 65728001 | 65728082 | 65728001 | ID=cds.MS.gene05063.t1;Parent=MS.gene05063.t1 |
| chr3.4 | exon | 65727850 | 65727970 | 65727850 | ID=MS.gene05063.t1.exon4;Parent=MS.gene05063.t1 |
| chr3.4 | CDS | 65727850 | 65727970 | 65727850 | ID=cds.MS.gene05063.t1;Parent=MS.gene05063.t1 |
| chr3.4 | exon | 65727431 | 65727620 | 65727431 | ID=MS.gene05063.t1.exon5;Parent=MS.gene05063.t1 |
| chr3.4 | CDS | 65727431 | 65727620 | 65727431 | ID=cds.MS.gene05063.t1;Parent=MS.gene05063.t1 |
| chr3.4 | exon | 65726045 | 65727148 | 65726045 | ID=MS.gene05063.t1.exon6;Parent=MS.gene05063.t1 |
| chr3.4 | CDS | 65726045 | 65727148 | 65726045 | ID=cds.MS.gene05063.t1;Parent=MS.gene05063.t1 |
| Gene Sequence |
| Protein sequence |
