Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05066.t1 | RHN68031.1 | 90 | 691 | 55 | 3 | 1 | 678 | 1 | 690 | 0.00E+00 | 1229.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05066.t1 | Q9SHY2 | 76.3 | 667 | 139 | 6 | 26 | 676 | 22 | 685 | 7.2e-297 | 1020.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05066.t1 | A0A396ITK6 | 90.0 | 691 | 55 | 3 | 1 | 678 | 1 | 690 | 0.0e+00 | 1229.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05216 | MS.gene05066 | PPI |
| MS.gene57831 | MS.gene05066 | PPI |
| MS.gene45566 | MS.gene05066 | PPI |
| MS.gene37726 | MS.gene05066 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05066.t1 | MTR_5g091600 | 87.734 | 693 | 59 | 5 | 1 | 678 | 1 | 682 | 0.0 | 1193 |
| MS.gene05066.t1 | MTR_3g063520 | 89.870 | 691 | 56 | 3 | 1 | 678 | 1 | 690 | 0.0 | 1178 |
| MS.gene05066.t1 | MTR_3g063490 | 84.173 | 695 | 90 | 4 | 1 | 676 | 1 | 694 | 0.0 | 1156 |
| MS.gene05066.t1 | MTR_6g077870 | 72.741 | 664 | 169 | 3 | 26 | 678 | 50 | 712 | 0.0 | 1000 |
| MS.gene05066.t1 | MTR_6g077870 | 71.558 | 552 | 145 | 3 | 138 | 678 | 1 | 551 | 0.0 | 820 |
| MS.gene05066.t1 | MTR_7g028250 | 57.337 | 661 | 246 | 9 | 34 | 669 | 30 | 679 | 0.0 | 762 |
| MS.gene05066.t1 | MTR_3g092090 | 55.000 | 660 | 273 | 6 | 20 | 663 | 12 | 663 | 0.0 | 741 |
| MS.gene05066.t1 | MTR_3g092090 | 53.823 | 667 | 272 | 7 | 2 | 652 | 6 | 652 | 0.0 | 724 |
| MS.gene05066.t1 | MTR_1g007580 | 51.556 | 675 | 294 | 9 | 19 | 666 | 4 | 672 | 0.0 | 702 |
| MS.gene05066.t1 | MTR_1g077840 | 50.755 | 662 | 303 | 7 | 20 | 665 | 25 | 679 | 0.0 | 700 |
| MS.gene05066.t1 | MTR_0312s0020 | 51.282 | 663 | 300 | 7 | 20 | 666 | 17 | 672 | 0.0 | 699 |
| MS.gene05066.t1 | MTR_1g007540 | 51.282 | 663 | 300 | 7 | 20 | 666 | 17 | 672 | 0.0 | 699 |
| MS.gene05066.t1 | MTR_5g091615 | 87.500 | 160 | 20 | 0 | 515 | 674 | 59 | 218 | 1.80e-88 | 278 |
| MS.gene05066.t1 | MTR_1626s0010 | 50.847 | 236 | 112 | 2 | 207 | 442 | 4 | 235 | 1.25e-80 | 256 |
| MS.gene05066.t1 | MTR_0312s0050 | 49.593 | 123 | 51 | 3 | 16 | 127 | 1 | 123 | 4.81e-32 | 120 |
| MS.gene05066.t1 | MTR_2g083230 | 82.609 | 46 | 5 | 1 | 129 | 171 | 34 | 79 | 4.49e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05066.t1 | AT1G65730 | 76.042 | 672 | 140 | 7 | 21 | 676 | 19 | 685 | 0.0 | 1039 |
| MS.gene05066.t1 | AT3G17650 | 72.030 | 665 | 169 | 4 | 29 | 676 | 46 | 710 | 0.0 | 954 |
| MS.gene05066.t1 | AT3G17650 | 72.030 | 665 | 169 | 4 | 29 | 676 | 46 | 710 | 0.0 | 954 |
| MS.gene05066.t1 | AT1G48370 | 71.321 | 666 | 173 | 4 | 29 | 676 | 55 | 720 | 0.0 | 935 |
| MS.gene05066.t1 | AT3G27020 | 57.421 | 667 | 263 | 6 | 22 | 669 | 12 | 676 | 0.0 | 769 |
| MS.gene05066.t1 | AT1G48370 | 70.018 | 557 | 149 | 4 | 138 | 676 | 1 | 557 | 0.0 | 761 |
| MS.gene05066.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 745 |
| MS.gene05066.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 745 |
| MS.gene05066.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 745 |
| MS.gene05066.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 745 |
| MS.gene05066.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 745 |
| MS.gene05066.t1 | AT5G41000 | 54.954 | 646 | 272 | 5 | 35 | 663 | 24 | 667 | 0.0 | 729 |
| MS.gene05066.t1 | AT4G24120 | 53.235 | 680 | 287 | 7 | 1 | 665 | 9 | 672 | 0.0 | 728 |
| MS.gene05066.t1 | AT5G24380 | 53.111 | 659 | 287 | 6 | 22 | 663 | 7 | 660 | 0.0 | 716 |
| MS.gene05066.t1 | AT5G41000 | 52.786 | 646 | 261 | 6 | 35 | 663 | 24 | 642 | 0.0 | 689 |
| MS.gene05066.t1 | AT5G53550 | 58.058 | 515 | 198 | 4 | 160 | 664 | 1 | 507 | 0.0 | 603 |
| MS.gene05066.t1 | AT5G41000 | 54.158 | 493 | 213 | 4 | 182 | 663 | 1 | 491 | 0.0 | 555 |
| MS.gene05066.t1 | AT5G45450 | 66.972 | 218 | 66 | 1 | 459 | 676 | 1 | 212 | 6.51e-98 | 300 |
Find 161 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTTGTTGTTAGCTTTCT+TGG | 0.055871 | 3.4:-65704761 | MS.gene05066:CDS |
| AATGTTTCTGCTGGGTTGTT+AGG | 0.216597 | 3.4:-65705191 | MS.gene05066:CDS |
| GAAGCTTGATATTGTTTATT+TGG | 0.238786 | 3.4:-65702671 | MS.gene05066:CDS |
| GTTCTTGGCACAACTCTTAT+AGG | 0.241739 | 3.4:-65703512 | MS.gene05066:CDS |
| GCTAAGGTTGATAAGTTCTT+AGG | 0.244541 | 3.4:-65702492 | MS.gene05066:CDS |
| GAGGAGATCTCTGTGGAAAA+AGG | 0.248700 | 3.4:-65705350 | MS.gene05066:CDS |
| ATGTTTGTGAGCCAAGTTAT+TGG | 0.272519 | 3.4:-65703014 | MS.gene05066:CDS |
| TGATTTGTGGAGATGGAATT+TGG | 0.272726 | 3.4:-65702593 | MS.gene05066:CDS |
| TACAACTTTGGGAAAGTTCT+TGG | 0.281237 | 3.4:-65703527 | MS.gene05066:CDS |
| AACGAAATATTGGTTATATA+TGG | 0.289135 | 3.4:+65703989 | None:intergenic |
| ACCGATCAACAACGAAATAT+TGG | 0.300050 | 3.4:+65703979 | None:intergenic |
| CCCTCATGGTTCGCAATTGC+AGG | 0.302996 | 3.4:-65703362 | MS.gene05066:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 3.4:+65705110 | None:intergenic |
| GCGAACAGCATTAATAATTA+TGG | 0.331487 | 3.4:+65702794 | None:intergenic |
| CCTTCGTTGAATGTTTCTGC+TGG | 0.339721 | 3.4:-65705200 | MS.gene05066:CDS |
| AAATTAGCCATCTTCGCTAT+TGG | 0.346002 | 3.4:-65703176 | MS.gene05066:CDS |
| TGATCGGTGGAATTCTTTCA+TGG | 0.350906 | 3.4:-65703964 | MS.gene05066:CDS |
| CCATCTTCGCTATTGGTGCT+TGG | 0.352652 | 3.4:-65703169 | MS.gene05066:CDS |
| AAGTAGTTTCCAATGTAAAA+TGG | 0.358086 | 3.4:+65702714 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 3.4:-65703560 | MS.gene05066:CDS |
| TTTGCAAACTTCCCCACATT+TGG | 0.363476 | 3.4:-65704311 | MS.gene05066:CDS |
| AGGGCTAAGGCTGATGCATT+TGG | 0.367842 | 3.4:-65702636 | MS.gene05066:CDS |
| TAGGTTTGTATAAACAATTA+TGG | 0.370836 | 3.4:-65703493 | MS.gene05066:CDS |
| GGGTTTGGTAGCTACTTGTT+TGG | 0.371080 | 3.4:-65704863 | MS.gene05066:CDS |
| TTATTTGGCAGAAGGTTGAT+AGG | 0.371137 | 3.4:-65702656 | MS.gene05066:CDS |
| GACAAGAATTTCATGCAAAT+AGG | 0.377015 | 3.4:+65702528 | None:intergenic |
| TGGCTATTCTACAACGCTTT+CGG | 0.377582 | 3.4:-65702954 | MS.gene05066:CDS |
| GTAGGGGAGAGAGGAGCATT+TGG | 0.378591 | 3.4:+65703437 | None:intergenic |
| GACACCACATGCTGCTAAAC+CGG | 0.383267 | 3.4:+65703118 | None:intergenic |
| TGGCTCACAAACATGGATTT+CGG | 0.390640 | 3.4:+65703023 | None:intergenic |
| CTTGCTTGTGCAGGTGGGTT+TGG | 0.395532 | 3.4:-65704878 | MS.gene05066:intron |
| GCCAATGATGTTAAGAGTCT+TGG | 0.398551 | 3.4:-65704806 | MS.gene05066:CDS |
| GTGATGGTCTATACAACTTT+GGG | 0.399347 | 3.4:-65703538 | MS.gene05066:CDS |
| GGTGATGGTCTATACAACTT+TGG | 0.401168 | 3.4:-65703539 | MS.gene05066:CDS |
| GTTTGGCACCTTCTGATGTA+TGG | 0.401190 | 3.4:+65704432 | None:intergenic |
| ATGAAGTTGAATCTCACAAC+TGG | 0.401497 | 3.4:-65705230 | MS.gene05066:CDS |
| TTCGCTATTGGTGCTTGGGC+AGG | 0.404021 | 3.4:-65703164 | MS.gene05066:CDS |
| CAACTTTATTCCTCTTCCTA+TGG | 0.405720 | 3.4:-65702748 | MS.gene05066:CDS |
| TTTCGATAAACGAGGGCGTT+AGG | 0.407080 | 3.4:+65702897 | None:intergenic |
| TGTTCCTACGTGGCAGAAAC+AGG | 0.407557 | 3.4:-65705312 | MS.gene05066:CDS |
| CTGCTTTGTTTGAGATCAGC+AGG | 0.407652 | 3.4:+65703896 | None:intergenic |
| TATTCCTCTTCCTATGGCTA+TGG | 0.410955 | 3.4:-65702742 | MS.gene05066:CDS |
| CATCTTCGCTATTGGTGCTT+GGG | 0.418097 | 3.4:-65703168 | MS.gene05066:CDS |
| GATGTTAAGAGTCTTGGTTT+AGG | 0.418370 | 3.4:-65704800 | MS.gene05066:CDS |
| CTTATGCAAGACTTCAAAAC+AGG | 0.423970 | 3.4:-65703065 | MS.gene05066:CDS |
| GGCAGAAACAGGTTACGGTT+AGG | 0.425396 | 3.4:-65705301 | MS.gene05066:CDS |
| TAAACGAGGGCGTTAGGTGC+AGG | 0.426821 | 3.4:+65702903 | None:intergenic |
| CGGCATGGCTGCGGTTGCAC+CGG | 0.427222 | 3.4:-65705393 | MS.gene05066:CDS |
| TGGTCCCTTGCATCGACTTA+CGG | 0.438370 | 3.4:-65703200 | MS.gene05066:CDS |
| ATGAGGGGATTTGATCTTTG+AGG | 0.439237 | 3.4:+65703378 | None:intergenic |
| GCAGAAACAGGTTACGGTTA+GGG | 0.440923 | 3.4:-65705300 | MS.gene05066:CDS |
| ACCAAGACTCTTAACATCAT+TGG | 0.446254 | 3.4:+65704805 | None:intergenic |
| ATGTTTCTGCTGGGTTGTTA+GGG | 0.449011 | 3.4:-65705190 | MS.gene05066:CDS |
| CCATAGCAGTTCCAATAACT+TGG | 0.450305 | 3.4:+65703003 | None:intergenic |
| TTCGGTACTCTTGGTCAACC+TGG | 0.450819 | 3.4:-65702936 | MS.gene05066:CDS |
| GATCGGTGGAATTCTTTCAT+GGG | 0.451529 | 3.4:-65703963 | MS.gene05066:CDS |
| TTTGGATCAGCTGTTGCGTC+CGG | 0.451755 | 3.4:-65702618 | MS.gene05066:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.451917 | 3.4:-65705077 | MS.gene05066:CDS |
| GGTGTCATGTGGCCTCTCAT+TGG | 0.456041 | 3.4:-65703941 | MS.gene05066:CDS |
| TTAAGAGTCTTGGTTTAGGA+TGG | 0.456468 | 3.4:-65704796 | MS.gene05066:CDS |
| TATCGAAACATGGCTATACT+AGG | 0.461201 | 3.4:-65702882 | MS.gene05066:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.462139 | 3.4:-65703878 | MS.gene05066:CDS |
| CCAAGCACCAATAGCGAAGA+TGG | 0.462172 | 3.4:+65703169 | None:intergenic |
| ACCAGCTTTCTCAAGCAACT+TGG | 0.467323 | 3.4:+65705145 | None:intergenic |
| GTTGCGTCCGGTTTGATTTG+TGG | 0.469197 | 3.4:-65702606 | MS.gene05066:CDS |
| CCAAGTTATTGGAACTGCTA+TGG | 0.469421 | 3.4:-65703003 | MS.gene05066:CDS |
| CTTCGTTGAATGTTTCTGCT+GGG | 0.472472 | 3.4:-65705199 | MS.gene05066:CDS |
| CTCAAACAAAGCAGCTTACA+TGG | 0.473967 | 3.4:-65703887 | MS.gene05066:CDS |
| ACCAATATTTCGTTGTTGAT+CGG | 0.478557 | 3.4:-65703980 | MS.gene05066:CDS |
| GCCGTGGCTTTCGACGTCAT+AGG | 0.479696 | 3.4:+65705412 | None:intergenic |
| TACAACGCTTTCGGTACTCT+TGG | 0.482640 | 3.4:-65702945 | MS.gene05066:CDS |
| CTTTAGCTGGTGGAAAATGA+AGG | 0.487926 | 3.4:+65703301 | None:intergenic |
| AAACTTCCCCACATTTGGTC+TGG | 0.492239 | 3.4:-65704306 | MS.gene05066:CDS |
| TGATGTAATACCACTTTAGC+TGG | 0.492701 | 3.4:+65703288 | None:intergenic |
| CCAAATATTGCAAAACAAGC+TGG | 0.494078 | 3.4:-65704833 | MS.gene05066:CDS |
| CAAGTTATTGGAACTGCTAT+GGG | 0.494211 | 3.4:-65703002 | MS.gene05066:CDS |
| GAGCAAGAAAAGAGCTAGGA+AGG | 0.494845 | 3.4:+65702568 | None:intergenic |
| TCCGGTTTGATTTGTGGAGA+TGG | 0.495372 | 3.4:-65702600 | MS.gene05066:CDS |
| GAGAGGAGCATTTGGATCAT+CGG | 0.497596 | 3.4:+65703445 | None:intergenic |
| GCTTGGGCAGGTGCGTCTAA+CGG | 0.499684 | 3.4:-65703152 | MS.gene05066:CDS |
| TTCTTTCATGGGGTGTCATG+TGG | 0.500744 | 3.4:-65703952 | MS.gene05066:CDS |
| TCCATCTCCACAAATCAAAC+CGG | 0.501528 | 3.4:+65702599 | None:intergenic |
| GATATTGTTTATTTGGCAGA+AGG | 0.507191 | 3.4:-65702664 | MS.gene05066:CDS |
| TTTGCTATTGATATGTGTGT+TGG | 0.507636 | 3.4:-65702693 | MS.gene05066:CDS |
| AATAACAGTATTCTCCTGTC+TGG | 0.507862 | 3.4:+65705103 | None:intergenic |
| CCGTGGCTTTCGACGTCATA+GGG | 0.509154 | 3.4:+65705413 | None:intergenic |
| CGAAAGCCACGGCATGGCTG+CGG | 0.511258 | 3.4:-65705402 | MS.gene05066:CDS |
| TGTCGTCGAATGAAAGTGTA+GGG | 0.513370 | 3.4:+65703420 | None:intergenic |
| TGAGCTGTTGCGGTACCACT+TGG | 0.516027 | 3.4:+65704470 | None:intergenic |
| TCTAACGGCGGTGTCCTAGC+CGG | 0.520318 | 3.4:-65703137 | MS.gene05066:CDS |
| TATTTGGCAGAAGGTTGATA+GGG | 0.522764 | 3.4:-65702655 | MS.gene05066:CDS |
| GAAAATGAAGGGGATGGTAA+TGG | 0.530222 | 3.4:+65703313 | None:intergenic |
| AATAACTTGGCTCACAAACA+TGG | 0.530485 | 3.4:+65703016 | None:intergenic |
| TTCAGTGGTTCCACTCCGAA+AGG | 0.534003 | 3.4:-65704732 | MS.gene05066:intron |
| AATATTTCGTTGTTGATCGG+TGG | 0.535914 | 3.4:-65703977 | MS.gene05066:CDS |
| TGCCTATGGTTGTGGACTAA+CGG | 0.537350 | 3.4:-65703225 | MS.gene05066:CDS |
| CGCCCTCGTTTATCGAAACA+TGG | 0.542039 | 3.4:-65702892 | MS.gene05066:CDS |
| AATGAAAGTGTAGGGGAGAG+AGG | 0.542386 | 3.4:+65703428 | None:intergenic |
| AATGCTGTTCGCGACTATGT+CGG | 0.543083 | 3.4:-65702783 | MS.gene05066:CDS |
| AGCATTAATAATTATGGCAC+CGG | 0.544235 | 3.4:+65702800 | None:intergenic |
| ACCAAGTTGCTTGAGAAAGC+TGG | 0.544740 | 3.4:-65705146 | MS.gene05066:CDS |
| GTGCAACCGCAGCCATGCCG+TGG | 0.547128 | 3.4:+65705396 | None:intergenic |
| GCATTGCAAAAGGCTAGTGC+AGG | 0.548633 | 3.4:+65703245 | None:intergenic |
| ATAGGCTTCCAGACCAAATG+TGG | 0.549567 | 3.4:+65704298 | None:intergenic |
| GCAGAAGGTTGATAGGGCTA+AGG | 0.554139 | 3.4:-65702649 | MS.gene05066:CDS |
| TTGATCTTTGAGGAACATCT+CGG | 0.554704 | 3.4:+65703388 | None:intergenic |
| TTCAGTGCTAGTGATGATTG+TGG | 0.556606 | 3.4:-65704335 | MS.gene05066:CDS |
| ATGGTTGTGGACTAACGGAT+TGG | 0.556934 | 3.4:-65703220 | MS.gene05066:CDS |
| ATTTGTGAGTCTCATGTTGT+CGG | 0.557992 | 3.4:-65705273 | MS.gene05066:CDS |
| ACAACCATAGGCATTGCAAA+AGG | 0.564312 | 3.4:+65703235 | None:intergenic |
| AGGGCGTTAGGTGCAGGGTA+TGG | 0.565245 | 3.4:+65702909 | None:intergenic |
| AACAGTTTCCATACATCAGA+AGG | 0.565961 | 3.4:-65704440 | MS.gene05066:intron |
| ATCGGTGGAATTCTTTCATG+GGG | 0.567187 | 3.4:-65703962 | MS.gene05066:CDS |
| AAACGAGGGCGTTAGGTGCA+GGG | 0.569241 | 3.4:+65702904 | None:intergenic |
| TTGTCGTCGAATGAAAGTGT+AGG | 0.575329 | 3.4:+65703419 | None:intergenic |
| GCAAGAGCAAGAAAAGAGCT+AGG | 0.577753 | 3.4:+65702564 | None:intergenic |
| GGTGCAGGGTATGGTGAACC+AGG | 0.579015 | 3.4:+65702918 | None:intergenic |
| CATAGGAAGAGGAATAAAGT+TGG | 0.579646 | 3.4:+65702749 | None:intergenic |
| ATAGCCATAGCCATAGGAAG+AGG | 0.581265 | 3.4:+65702738 | None:intergenic |
| CTGCAATTGCGAACCATGAG+GGG | 0.583286 | 3.4:+65703363 | None:intergenic |
| ATCCGTTAGTCCACAACCAT+AGG | 0.586179 | 3.4:+65703223 | None:intergenic |
| TTTAGCTGGTGGAAAATGAA+GGG | 0.586752 | 3.4:+65703302 | None:intergenic |
| CAAAACAGGTTACATGACAA+TGG | 0.590728 | 3.4:-65703051 | MS.gene05066:CDS |
| AAGAATTTCATGCAAATAGG+TGG | 0.591699 | 3.4:+65702531 | None:intergenic |
| GTCAAGAGCAGCAAATGCTA+AGG | 0.594984 | 3.4:-65702508 | MS.gene05066:CDS |
| AATGGTATAGCCATAGCCAT+AGG | 0.595250 | 3.4:+65702732 | None:intergenic |
| CCCTATGACGTCGAAAGCCA+CGG | 0.598986 | 3.4:-65705413 | MS.gene05066:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 3.4:-65703554 | MS.gene05066:CDS |
| AAACATGGCTATACTAGGTG+TGG | 0.601524 | 3.4:-65702877 | MS.gene05066:CDS |
| CCTGCAATTGCGAACCATGA+GGG | 0.604092 | 3.4:+65703362 | None:intergenic |
| AGCAAGAAAAGAGCTAGGAA+GGG | 0.609263 | 3.4:+65702569 | None:intergenic |
| TACGTGGCAGAAACAGGTTA+CGG | 0.614426 | 3.4:-65705306 | MS.gene05066:CDS |
| TCAAAGATCAAATCCCCTCA+TGG | 0.616210 | 3.4:-65703376 | MS.gene05066:CDS |
| TGACGTCGAAAGCCACGGCA+TGG | 0.618397 | 3.4:-65705408 | MS.gene05066:CDS |
| AGTTGCTTGAGAAAGCTGGT+TGG | 0.620575 | 3.4:-65705142 | MS.gene05066:CDS |
| CACATGCTGCTAAACCGGCT+AGG | 0.621749 | 3.4:+65703123 | None:intergenic |
| TGCTTTGTTTGAGATCAGCA+GGG | 0.627385 | 3.4:+65703897 | None:intergenic |
| TGTAATACCACTTTAGCTGG+TGG | 0.629875 | 3.4:+65703291 | None:intergenic |
| ATGGCTATACTAGGTGTGGA+CGG | 0.647638 | 3.4:-65702873 | MS.gene05066:CDS |
| TAGGCTTCCAGACCAAATGT+GGG | 0.650528 | 3.4:+65704299 | None:intergenic |
| TTAGCTGGTGGAAAATGAAG+GGG | 0.653662 | 3.4:+65703303 | None:intergenic |
| CTGGTGGAAAATGAAGGGGA+TGG | 0.654258 | 3.4:+65703307 | None:intergenic |
| TGGGCAGGTGCGTCTAACGG+CGG | 0.655359 | 3.4:-65703149 | MS.gene05066:CDS |
| GTTGATAAGATGAGCTGTTG+CGG | 0.660296 | 3.4:+65704460 | None:intergenic |
| AGTTGTTCATCATTCAACAC+CGG | 0.662303 | 3.4:+65705374 | None:intergenic |
| GCCTGCAATTGCGAACCATG+AGG | 0.668031 | 3.4:+65703361 | None:intergenic |
| TAGTACTGTACCTTTCGGAG+TGG | 0.669012 | 3.4:+65704722 | None:intergenic |
| TGAAGTTGAATCTCACAACT+GGG | 0.670966 | 3.4:-65705229 | MS.gene05066:CDS |
| GTTGAATGATGAACAACTTG+AGG | 0.685365 | 3.4:-65705369 | MS.gene05066:CDS |
| TAGCCATGTTTCGATAAACG+AGG | 0.685399 | 3.4:+65702889 | None:intergenic |
| TTCAAACTGACATATCCAAG+TGG | 0.687798 | 3.4:-65704485 | MS.gene05066:CDS |
| TAGAATAGCCAGAAAACACA+CGG | 0.691145 | 3.4:+65702966 | None:intergenic |
| ACAACTTGAGGAGATCTCTG+TGG | 0.691473 | 3.4:-65705357 | MS.gene05066:CDS |
| GCTAGTGGAATTGCATTCAG+CGG | 0.695424 | 3.4:-65705062 | MS.gene05066:intron |
| CTAGCCGGTTTAGCAGCATG+TGG | 0.697720 | 3.4:-65703122 | MS.gene05066:CDS |
| AGCCATGTTTCGATAAACGA+GGG | 0.699106 | 3.4:+65702890 | None:intergenic |
| CCAGCAGAAACATTCAACGA+AGG | 0.700492 | 3.4:+65705200 | None:intergenic |
| AGGCTTCCAGACCAAATGTG+GGG | 0.704515 | 3.4:+65704300 | None:intergenic |
| GTCGTCGAATGAAAGTGTAG+GGG | 0.705258 | 3.4:+65703421 | None:intergenic |
| GTAACCTGTTTCTGCCACGT+AGG | 0.720663 | 3.4:+65705308 | None:intergenic |
| AAGGAACATCTGTTCCTACG+TGG | 0.720715 | 3.4:-65705322 | MS.gene05066:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGAAAGAATTTAAAA+TGG | - | chr3.4:65703669-65703688 | MS.gene05066:intron | 10.0% |
| !! | AACATCAAATTAAAACTAAA+TGG | + | chr3.4:65703378-65703397 | None:intergenic | 15.0% |
| !! | TATTATTTAATGTACATAAC+AGG | - | chr3.4:65703850-65703869 | MS.gene05066:intron | 15.0% |
| !! | AAAGTATACTTACAAAAAAG+TGG | + | chr3.4:65704141-65704160 | None:intergenic | 20.0% |
| !! | TAAATGTTAGCTAAAAGAAA+AGG | + | chr3.4:65703832-65703851 | None:intergenic | 20.0% |
| !! | TAGGTTTGTATAAACAATTA+TGG | - | chr3.4:65704417-65704436 | MS.gene05066:intron | 20.0% |
| !!! | AACGAAATATTGGTTATATA+TGG | + | chr3.4:65703924-65703943 | None:intergenic | 20.0% |
| !!! | AACTTGTTCTAAAAACTATT+AGG | + | chr3.4:65702933-65702952 | None:intergenic | 20.0% |
| !!! | ACTTGTTCTAAAAACTATTA+GGG | + | chr3.4:65702932-65702951 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGTAAGTATACTT+TGG | - | chr3.4:65704140-65704159 | MS.gene05066:intron | 20.0% |
| !!! | GGGTTAAATTGATTTTATTA+AGG | + | chr3.4:65703238-65703257 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATTGATTGAACA+AGG | + | chr3.4:65703263-65703282 | None:intergenic | 20.0% |
| ! | AAGTAGTTTCCAATGTAAAA+TGG | + | chr3.4:65705199-65705218 | None:intergenic | 25.0% |
| ! | AGATTTGTCAACAACAAATA+AGG | + | chr3.4:65702999-65703018 | None:intergenic | 25.0% |
| ! | AGTCAAGTATTAAAATGAAG+TGG | + | chr3.4:65702886-65702905 | None:intergenic | 25.0% |
| ! | CAACTTAAAACACAGTAAAT+TGG | - | chr3.4:65704200-65704219 | MS.gene05066:intron | 25.0% |
| ! | CAATAGAATACATTATCAAC+CGG | + | chr3.4:65704290-65704309 | None:intergenic | 25.0% |
| ! | GAAGCTTGATATTGTTTATT+TGG | - | chr3.4:65705239-65705258 | MS.gene05066:CDS | 25.0% |
| ! | TAAAACAATTGAACATGACT+TGG | - | chr3.4:65703276-65703295 | MS.gene05066:CDS | 25.0% |
| ! | TTAAATTGATTGAACAAGGA+CGG | + | chr3.4:65703259-65703278 | None:intergenic | 25.0% |
| !!! | TGAATCGATTTTTAAAACGT+GGG | - | chr3.4:65703320-65703339 | MS.gene05066:CDS | 25.0% |
| !!! | TTGAATCGATTTTTAAAACG+TGG | - | chr3.4:65703319-65703338 | MS.gene05066:CDS | 25.0% |
| AAAAACTGCATCATACTTTG+CGG | - | chr3.4:65705076-65705095 | MS.gene05066:CDS | 30.0% | |
| AACAATCATAATCTGCAACA+AGG | + | chr3.4:65703402-65703421 | None:intergenic | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | - | chr3.4:65703728-65703747 | MS.gene05066:intron | 30.0% | |
| AAGAATTTCATGCAAATAGG+TGG | + | chr3.4:65705382-65705401 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | - | chr3.4:65704229-65704248 | MS.gene05066:intron | 30.0% | |
| ACCAATATTTCGTTGTTGAT+CGG | - | chr3.4:65703930-65703949 | MS.gene05066:CDS | 30.0% | |
| AGCATTAATAATTATGGCAC+CGG | + | chr3.4:65705113-65705132 | None:intergenic | 30.0% | |
| GACAAGAATTTCATGCAAAT+AGG | + | chr3.4:65705385-65705404 | None:intergenic | 30.0% | |
| GATATTGTTTATTTGGCAGA+AGG | - | chr3.4:65705246-65705265 | MS.gene05066:CDS | 30.0% | |
| GATTGAAACAAGTACAAAAC+TGG | - | chr3.4:65704222-65704241 | MS.gene05066:intron | 30.0% | |
| GCGAACAGCATTAATAATTA+TGG | + | chr3.4:65705119-65705138 | None:intergenic | 30.0% | |
| TAAATTGATTGAACAAGGAC+GGG | + | chr3.4:65703258-65703277 | None:intergenic | 30.0% | |
| TTGTATTCTCTCTAAACTAC+AGG | - | chr3.4:65704322-65704341 | MS.gene05066:CDS | 30.0% | |
| ! | ATGGCTATACCATTTTACAT+TGG | - | chr3.4:65705187-65705206 | MS.gene05066:CDS | 30.0% |
| ! | CAAAGTATGATGCAGTTTTT+AGG | + | chr3.4:65705076-65705095 | None:intergenic | 30.0% |
| ! | TCTAAACTACAGGTTTTCAT+AGG | - | chr3.4:65704332-65704351 | MS.gene05066:CDS | 30.0% |
| ! | TTTGATAGTACTGTACCTTT+CGG | + | chr3.4:65703196-65703215 | None:intergenic | 30.0% |
| !! | CGGTTGATAATGTATTCTAT+TGG | - | chr3.4:65704288-65704307 | MS.gene05066:intron | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | - | chr3.4:65703149-65703168 | MS.gene05066:CDS | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | - | chr3.4:65705217-65705236 | MS.gene05066:CDS | 30.0% |
| !!! | TAGATCTTTTTCAATGTGAC+CGG | - | chr3.4:65704268-65704287 | MS.gene05066:intron | 30.0% |
| AAATTAGCCATCTTCGCTAT+TGG | - | chr3.4:65704734-65704753 | MS.gene05066:CDS | 35.0% | |
| AACAGTTTCCATACATCAGA+AGG | - | chr3.4:65703470-65703489 | MS.gene05066:CDS | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | + | chr3.4:65702810-65702829 | None:intergenic | 35.0% | |
| AATAACTTGGCTCACAAACA+TGG | + | chr3.4:65704897-65704916 | None:intergenic | 35.0% | |
| AATATTTCGTTGTTGATCGG+TGG | - | chr3.4:65703933-65703952 | MS.gene05066:CDS | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | + | chr3.4:65703108-65703127 | None:intergenic | 35.0% | |
| ACCGATCAACAACGAAATAT+TGG | + | chr3.4:65703934-65703953 | None:intergenic | 35.0% | |
| AGTTGTTCATCATTCAACAC+CGG | + | chr3.4:65702539-65702558 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | - | chr3.4:65704356-65704375 | MS.gene05066:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | - | chr3.4:65704350-65704369 | MS.gene05066:CDS | 35.0% | |
| ATGAAGTTGAATCTCACAAC+TGG | - | chr3.4:65702680-65702699 | MS.gene05066:CDS | 35.0% | |
| ATGTTTGTGAGCCAAGTTAT+TGG | - | chr3.4:65704896-65704915 | MS.gene05066:intron | 35.0% | |
| ATTTGTGAGTCTCATGTTGT+CGG | - | chr3.4:65702637-65702656 | MS.gene05066:CDS | 35.0% | |
| CAAAACAGGTTACATGACAA+TGG | - | chr3.4:65704859-65704878 | MS.gene05066:CDS | 35.0% | |
| CAACTTTATTCCTCTTCCTA+TGG | - | chr3.4:65705162-65705181 | MS.gene05066:CDS | 35.0% | |
| CAAGTTATTGGAACTGCTAT+GGG | - | chr3.4:65704908-65704927 | MS.gene05066:intron | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | + | chr3.4:65703733-65703752 | None:intergenic | 35.0% | |
| CATAGGAAGAGGAATAAAGT+TGG | + | chr3.4:65705164-65705183 | None:intergenic | 35.0% | |
| CCAAATATTGCAAAACAAGC+TGG | - | chr3.4:65703077-65703096 | MS.gene05066:CDS | 35.0% | |
| CTTATGCAAGACTTCAAAAC+AGG | - | chr3.4:65704845-65704864 | MS.gene05066:CDS | 35.0% | |
| GAACATAGAGGTTTCAGTTT+CGG | + | chr3.4:65703721-65703740 | None:intergenic | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | - | chr3.4:65703110-65703129 | MS.gene05066:CDS | 35.0% | |
| GTGATGGTCTATACAACTTT+GGG | - | chr3.4:65704372-65704391 | MS.gene05066:CDS | 35.0% | |
| GTTGAATGATGAACAACTTG+AGG | - | chr3.4:65702541-65702560 | MS.gene05066:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | + | chr3.4:65703498-65703517 | None:intergenic | 35.0% | |
| TAGAATAGCCAGAAAACACA+CGG | + | chr3.4:65704947-65704966 | None:intergenic | 35.0% | |
| TATCGAAACATGGCTATACT+AGG | - | chr3.4:65705028-65705047 | MS.gene05066:intron | 35.0% | |
| TGAAGTTGAATCTCACAACT+GGG | - | chr3.4:65702681-65702700 | MS.gene05066:CDS | 35.0% | |
| TGATGTAATACCACTTTAGC+TGG | + | chr3.4:65704625-65704644 | None:intergenic | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | - | chr3.4:65703114-65703133 | MS.gene05066:CDS | 35.0% | |
| TTCAAACTGACATATCCAAG+TGG | - | chr3.4:65703425-65703444 | MS.gene05066:CDS | 35.0% | |
| TTTAGCTGGTGGAAAATGAA+GGG | + | chr3.4:65704611-65704630 | None:intergenic | 35.0% | |
| ! | ATTTTTCTGCAACCTATGTG+GGG | - | chr3.4:65703883-65703902 | MS.gene05066:CDS | 35.0% |
| ! | GATTTTTCTGCAACCTATGT+GGG | - | chr3.4:65703882-65703901 | MS.gene05066:CDS | 35.0% |
| ! | GGTTTTTCTTTGTGAAGACA+TGG | - | chr3.4:65702741-65702760 | MS.gene05066:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | - | chr3.4:65702793-65702812 | MS.gene05066:CDS | 35.0% |
| ! | TACAACTTTGGGAAAGTTCT+TGG | - | chr3.4:65704383-65704402 | MS.gene05066:CDS | 35.0% |
| ! | TGATTTGTGGAGATGGAATT+TGG | - | chr3.4:65705317-65705336 | MS.gene05066:CDS | 35.0% |
| ! | TGATTTTTCTGCAACCTATG+TGG | - | chr3.4:65703881-65703900 | MS.gene05066:CDS | 35.0% |
| ! | TTATTTGGCAGAAGGTTGAT+AGG | - | chr3.4:65705254-65705273 | MS.gene05066:CDS | 35.0% |
| ! | TTGATCTTTGAGGAACATCT+CGG | + | chr3.4:65704525-65704544 | None:intergenic | 35.0% |
| !! | AAGAAGCAAGTAAAAGCACT+TGG | - | chr3.4:65703506-65703525 | MS.gene05066:CDS | 35.0% |
| !! | GCTAAGGTTGATAAGTTCTT+AGG | - | chr3.4:65705418-65705437 | MS.gene05066:CDS | 35.0% |
| !! | TATTTGGCAGAAGGTTGATA+GGG | - | chr3.4:65705255-65705274 | MS.gene05066:CDS | 35.0% |
| !! | TTGGTGCTAAAAAAGGAGAT+TGG | - | chr3.4:65703988-65704007 | MS.gene05066:CDS | 35.0% |
| !!! | AGTCACGTACTTGTTTTGAT+AGG | + | chr3.4:65703633-65703652 | None:intergenic | 35.0% |
| !!! | CCAGCTTGTTTTGCAATATT+TGG | + | chr3.4:65703080-65703099 | None:intergenic | 35.0% |
| !!! | CGATTTTTAAAACGTGGGAT+GGG | - | chr3.4:65703325-65703344 | MS.gene05066:CDS | 35.0% |
| !!! | CTTCTCCTTTAGCTTTTTGT+GGG | - | chr3.4:65703535-65703554 | MS.gene05066:CDS | 35.0% |
| !!! | TCGATTTTTAAAACGTGGGA+TGG | - | chr3.4:65703324-65703343 | MS.gene05066:CDS | 35.0% |
| !!! | TCTTCTCCTTTAGCTTTTTG+TGG | - | chr3.4:65703534-65703553 | MS.gene05066:CDS | 35.0% |
| !!! | TTCTCCTTTAGCTTTTTGTG+GGG | - | chr3.4:65703536-65703555 | MS.gene05066:CDS | 35.0% |
| AAACATGGCTATACTAGGTG+TGG | - | chr3.4:65705033-65705052 | MS.gene05066:intron | 40.0% | |
| AATGGTATAGCCATAGCCAT+AGG | + | chr3.4:65705181-65705200 | None:intergenic | 40.0% | |
| AGCAAGAAAAGAGCTAGGAA+GGG | + | chr3.4:65705344-65705363 | None:intergenic | 40.0% | |
| AGCCATGTTTCGATAAACGA+GGG | + | chr3.4:65705023-65705042 | None:intergenic | 40.0% | |
| AGGAGATCTCTGTGGAAAAA+GGG | - | chr3.4:65702561-65702580 | MS.gene05066:CDS | 40.0% | |
| ATAGAGGTTTCAGTTTCGGT+CGG | + | chr3.4:65703717-65703736 | None:intergenic | 40.0% | |
| ATCGGTGGAATTCTTTCATG+GGG | - | chr3.4:65703948-65703967 | MS.gene05066:CDS | 40.0% | |
| ATGAGGGGATTTGATCTTTG+AGG | + | chr3.4:65704535-65704554 | None:intergenic | 40.0% | |
| CCAAGTTATTGGAACTGCTA+TGG | - | chr3.4:65704907-65704926 | MS.gene05066:intron | 40.0% | |
| CCATAGCAGTTCCAATAACT+TGG | + | chr3.4:65704910-65704929 | None:intergenic | 40.0% | |
| CTCAAACAAAGCAGCTTACA+TGG | - | chr3.4:65704023-65704042 | MS.gene05066:CDS | 40.0% | |
| CTTTAGCTGGTGGAAAATGA+AGG | + | chr3.4:65704612-65704631 | None:intergenic | 40.0% | |
| GAAAATGAAGGGGATGGTAA+TGG | + | chr3.4:65704600-65704619 | None:intergenic | 40.0% | |
| GAAACCCCACAAAAAGCTAA+AGG | + | chr3.4:65703543-65703562 | None:intergenic | 40.0% | |
| GATCGGTGGAATTCTTTCAT+GGG | - | chr3.4:65703947-65703966 | MS.gene05066:CDS | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | - | chr3.4:65703104-65703123 | MS.gene05066:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | + | chr3.4:65702803-65702822 | None:intergenic | 40.0% | |
| GTTCTTGGCACAACTCTTAT+AGG | - | chr3.4:65704398-65704417 | MS.gene05066:intron | 40.0% | |
| TAGCCATGTTTCGATAAACG+AGG | + | chr3.4:65705024-65705043 | None:intergenic | 40.0% | |
| TATTCCTCTTCCTATGGCTA+TGG | - | chr3.4:65705168-65705187 | MS.gene05066:CDS | 40.0% | |
| TCAAAGATCAAATCCCCTCA+TGG | - | chr3.4:65704534-65704553 | MS.gene05066:intron | 40.0% | |
| TCCATCTCCACAAATCAAAC+CGG | + | chr3.4:65705314-65705333 | None:intergenic | 40.0% | |
| TCTGTGGAAAAAGGGTTTGA+AGG | - | chr3.4:65702569-65702588 | MS.gene05066:CDS | 40.0% | |
| TGATCGGTGGAATTCTTTCA+TGG | - | chr3.4:65703946-65703965 | MS.gene05066:CDS | 40.0% | |
| TGGCTATTCTACAACGCTTT+CGG | - | chr3.4:65704956-65704975 | MS.gene05066:intron | 40.0% | |
| TGGCTCACAAACATGGATTT+CGG | + | chr3.4:65704890-65704909 | None:intergenic | 40.0% | |
| TGTAATACCACTTTAGCTGG+TGG | + | chr3.4:65704622-65704641 | None:intergenic | 40.0% | |
| TTAGCTGGTGGAAAATGAAG+GGG | + | chr3.4:65704610-65704629 | None:intergenic | 40.0% | |
| TTCAGTGCTAGTGATGATTG+TGG | - | chr3.4:65703575-65703594 | MS.gene05066:intron | 40.0% | |
| TTTGCAAACTTCCCCACATT+TGG | - | chr3.4:65703599-65703618 | MS.gene05066:intron | 40.0% | |
| ! | AATGTTTCTGCTGGGTTGTT+AGG | - | chr3.4:65702719-65702738 | MS.gene05066:CDS | 40.0% |
| ! | ACAACCATAGGCATTGCAAA+AGG | + | chr3.4:65704678-65704697 | None:intergenic | 40.0% |
| ! | ATGTTTCTGCTGGGTTGTTA+GGG | - | chr3.4:65702720-65702739 | MS.gene05066:CDS | 40.0% |
| ! | ATTTTCCGTAAGTCGATGCA+AGG | + | chr3.4:65704718-65704737 | None:intergenic | 40.0% |
| ! | CACTAGCACTGAAAAACCAT+TGG | + | chr3.4:65703568-65703587 | None:intergenic | 40.0% |
| ! | CTTCGTTGAATGTTTCTGCT+GGG | - | chr3.4:65702711-65702730 | MS.gene05066:CDS | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | - | chr3.4:65703163-65703182 | MS.gene05066:CDS | 40.0% |
| ! | GGTGATGGTCTATACAACTT+TGG | - | chr3.4:65704371-65704390 | MS.gene05066:CDS | 40.0% |
| ! | GTTGATAAGATGAGCTGTTG+CGG | + | chr3.4:65703453-65703472 | None:intergenic | 40.0% |
| ! | TCATTTTCCACCAGCTAAAG+TGG | - | chr3.4:65704612-65704631 | MS.gene05066:intron | 40.0% |
| ! | TGTCGTCGAATGAAAGTGTA+GGG | + | chr3.4:65704493-65704512 | None:intergenic | 40.0% |
| ! | TTATATCGCCGTGTGTTTTC+TGG | - | chr3.4:65704936-65704955 | MS.gene05066:intron | 40.0% |
| ! | TTGTCGTCGAATGAAAGTGT+AGG | + | chr3.4:65704494-65704513 | None:intergenic | 40.0% |
| ! | TTTTCCGTAAGTCGATGCAA+GGG | + | chr3.4:65704717-65704736 | None:intergenic | 40.0% |
| ! | TTTTGCAATGCCTATGGTTG+TGG | - | chr3.4:65704677-65704696 | MS.gene05066:intron | 40.0% |
| ! | TTTTGTGGGGTTTCTTCCAA+TGG | - | chr3.4:65703549-65703568 | MS.gene05066:CDS | 40.0% |
| ! | TTTTTCTGCAACCTATGTGG+GGG | - | chr3.4:65703884-65703903 | MS.gene05066:CDS | 40.0% |
| !! | CCTCTCATTGGTGCTAAAAA+AGG | - | chr3.4:65703981-65704000 | MS.gene05066:CDS | 40.0% |
| !! | TGCTTTGTTTGAGATCAGCA+GGG | + | chr3.4:65704016-65704035 | None:intergenic | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAG+AGG | + | chr3.4:65703984-65704003 | None:intergenic | 40.0% |
| AAACTTCCCCACATTTGGTC+TGG | - | chr3.4:65703604-65703623 | MS.gene05066:intron | 45.0% | |
| AAGGAACATCTGTTCCTACG+TGG | - | chr3.4:65702588-65702607 | MS.gene05066:CDS | 45.0% | |
| AATGCTGTTCGCGACTATGT+CGG | - | chr3.4:65705127-65705146 | MS.gene05066:CDS | 45.0% | |
| ACAACTTGAGGAGATCTCTG+TGG | - | chr3.4:65702553-65702572 | MS.gene05066:CDS | 45.0% | |
| ACCAAGTTGCTTGAGAAAGC+TGG | - | chr3.4:65702764-65702783 | MS.gene05066:CDS | 45.0% | |
| ACCAGCTTTCTCAAGCAACT+TGG | + | chr3.4:65702768-65702787 | None:intergenic | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | - | chr3.4:65704032-65704051 | MS.gene05066:CDS | 45.0% | |
| AGTTGCTTGAGAAAGCTGGT+TGG | - | chr3.4:65702768-65702787 | MS.gene05066:CDS | 45.0% | |
| ATAGCCATAGCCATAGGAAG+AGG | + | chr3.4:65705175-65705194 | None:intergenic | 45.0% | |
| ATAGGCTTCCAGACCAAATG+TGG | + | chr3.4:65703615-65703634 | None:intergenic | 45.0% | |
| ATCCGTTAGTCCACAACCAT+AGG | + | chr3.4:65704690-65704709 | None:intergenic | 45.0% | |
| ATGGCTATACTAGGTGTGGA+CGG | - | chr3.4:65705037-65705056 | MS.gene05066:intron | 45.0% | |
| ATTTGCTTGCTTGTGCAGGT+GGG | - | chr3.4:65703027-65703046 | MS.gene05066:CDS | 45.0% | |
| CCAGCAGAAACATTCAACGA+AGG | + | chr3.4:65702713-65702732 | None:intergenic | 45.0% | |
| GAGCAAGAAAAGAGCTAGGA+AGG | + | chr3.4:65705345-65705364 | None:intergenic | 45.0% | |
| GAGGAGATCTCTGTGGAAAA+AGG | - | chr3.4:65702560-65702579 | MS.gene05066:CDS | 45.0% | |
| GCAAGAGCAAGAAAAGAGCT+AGG | + | chr3.4:65705349-65705368 | None:intergenic | 45.0% | |
| GCAGAAACAGGTTACGGTTA+GGG | - | chr3.4:65702610-65702629 | MS.gene05066:CDS | 45.0% | |
| GCTAGTGGAATTGCATTCAG+CGG | - | chr3.4:65702848-65702867 | MS.gene05066:CDS | 45.0% | |
| GTCAAGAGCAGCAAATGCTA+AGG | - | chr3.4:65705402-65705421 | MS.gene05066:CDS | 45.0% | |
| GTTTGGCACCTTCTGATGTA+TGG | + | chr3.4:65703481-65703500 | None:intergenic | 45.0% | |
| TACAACGCTTTCGGTACTCT+TGG | - | chr3.4:65704965-65704984 | MS.gene05066:intron | 45.0% | |
| TACGTGGCAGAAACAGGTTA+CGG | - | chr3.4:65702604-65702623 | MS.gene05066:CDS | 45.0% | |
| TAGGCTTCCAGACCAAATGT+GGG | + | chr3.4:65703614-65703633 | None:intergenic | 45.0% | |
| TAGTACTGTACCTTTCGGAG+TGG | + | chr3.4:65703191-65703210 | None:intergenic | 45.0% | |
| ! | AATGAAAGTGTAGGGGAGAG+AGG | + | chr3.4:65704485-65704504 | None:intergenic | 45.0% |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | - | chr3.4:65702833-65702852 | MS.gene05066:CDS | 45.0% |
| ! | AGCTCTTTTCTTGCTCTTGC+TGG | - | chr3.4:65705349-65705368 | MS.gene05066:CDS | 45.0% |
| ! | ATGGTTGTGGACTAACGGAT+TGG | - | chr3.4:65704690-65704709 | MS.gene05066:intron | 45.0% |
| ! | CATCTTCGCTATTGGTGCTT+GGG | - | chr3.4:65704742-65704761 | MS.gene05066:CDS | 45.0% |
| ! | CCTTCGTTGAATGTTTCTGC+TGG | - | chr3.4:65702710-65702729 | MS.gene05066:CDS | 45.0% |
| ! | GGGTTTGGTAGCTACTTGTT+TGG | - | chr3.4:65703047-65703066 | MS.gene05066:CDS | 45.0% |
| ! | GTCGTCGAATGAAAGTGTAG+GGG | + | chr3.4:65704492-65704511 | None:intergenic | 45.0% |
| ! | TGCCTATGGTTGTGGACTAA+CGG | - | chr3.4:65704685-65704704 | MS.gene05066:intron | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | - | chr3.4:65703958-65703977 | MS.gene05066:CDS | 45.0% |
| !! | CTAGCCTTTTGCAATGCCTA+TGG | - | chr3.4:65704671-65704690 | MS.gene05066:intron | 45.0% |
| !! | CTGCTTTGTTTGAGATCAGC+AGG | + | chr3.4:65704017-65704036 | None:intergenic | 45.0% |
| !! | CTTGATTTGCTTGCTTGTGC+AGG | - | chr3.4:65703023-65703042 | MS.gene05066:CDS | 45.0% |
| !! | GAGAGGAGCATTTGGATCAT+CGG | + | chr3.4:65704468-65704487 | None:intergenic | 45.0% |
| !! | TCCGGTTTGATTTGTGGAGA+TGG | - | chr3.4:65705310-65705329 | MS.gene05066:CDS | 45.0% |
| !! | TTTCGATAAACGAGGGCGTT+AGG | + | chr3.4:65705016-65705035 | None:intergenic | 45.0% |
| !! | TTCATTAATTAATAAAATAA+AGG | + | chr3.4:65703658-65703677 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | - | chr3.4:65704087-65704106 | MS.gene05066:intron | 5.0% |
| AGGCTTCCAGACCAAATGTG+GGG | + | chr3.4:65703613-65703632 | None:intergenic | 50.0% | |
| AGGGCTAAGGCTGATGCATT+TGG | - | chr3.4:65705274-65705293 | MS.gene05066:CDS | 50.0% | |
| CCAAGCACCAATAGCGAAGA+TGG | + | chr3.4:65704744-65704763 | None:intergenic | 50.0% | |
| CCTGCAATTGCGAACCATGA+GGG | + | chr3.4:65704551-65704570 | None:intergenic | 50.0% | |
| CGCCCTCGTTTATCGAAACA+TGG | - | chr3.4:65705018-65705037 | MS.gene05066:intron | 50.0% | |
| CTGCAATTGCGAACCATGAG+GGG | + | chr3.4:65704550-65704569 | None:intergenic | 50.0% | |
| CTGGTGGAAAATGAAGGGGA+TGG | + | chr3.4:65704606-65704625 | None:intergenic | 50.0% | |
| GACACCACATGCTGCTAAAC+CGG | + | chr3.4:65704795-65704814 | None:intergenic | 50.0% | |
| GCATTGCAAAAGGCTAGTGC+AGG | + | chr3.4:65704668-65704687 | None:intergenic | 50.0% | |
| GGCAGAAACAGGTTACGGTT+AGG | - | chr3.4:65702609-65702628 | MS.gene05066:CDS | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | + | chr3.4:65703898-65703917 | None:intergenic | 50.0% | |
| TGTTCCTACGTGGCAGAAAC+AGG | - | chr3.4:65702598-65702617 | MS.gene05066:CDS | 50.0% | |
| TTCAGTGGTTCCACTCCGAA+AGG | - | chr3.4:65703178-65703197 | MS.gene05066:CDS | 50.0% | |
| TTCGGTACTCTTGGTCAACC+TGG | - | chr3.4:65704974-65704993 | MS.gene05066:intron | 50.0% | |
| TTTGGATCAGCTGTTGCGTC+CGG | - | chr3.4:65705292-65705311 | MS.gene05066:CDS | 50.0% | |
| ! | CCATCTTCGCTATTGGTGCT+TGG | - | chr3.4:65704741-65704760 | MS.gene05066:CDS | 50.0% |
| ! | GATTTGCTTGCTTGTGCAGG+TGG | - | chr3.4:65703026-65703045 | MS.gene05066:CDS | 50.0% |
| !! | GCAGAAGGTTGATAGGGCTA+AGG | - | chr3.4:65705261-65705280 | MS.gene05066:CDS | 50.0% |
| !! | GTAACCTGTTTCTGCCACGT+AGG | + | chr3.4:65702605-65702624 | None:intergenic | 50.0% |
| !! | GTTGCGTCCGGTTTGATTTG+TGG | - | chr3.4:65705304-65705323 | MS.gene05066:CDS | 50.0% |
| !! | TGGTCCCTTGCATCGACTTA+CGG | - | chr3.4:65704710-65704729 | MS.gene05066:intron | 50.0% |
| CACATGCTGCTAAACCGGCT+AGG | + | chr3.4:65704790-65704809 | None:intergenic | 55.0% | |
| CCCTATGACGTCGAAAGCCA+CGG | - | chr3.4:65702497-65702516 | MS.gene05066:CDS | 55.0% | |
| CCCTCATGGTTCGCAATTGC+AGG | - | chr3.4:65704548-65704567 | MS.gene05066:intron | 55.0% | |
| CCGTGGCTTTCGACGTCATA+GGG | + | chr3.4:65702500-65702519 | None:intergenic | 55.0% | |
| CTGCAACCTATGTGGGGGTT+GGG | - | chr3.4:65703889-65703908 | MS.gene05066:CDS | 55.0% | |
| GCCTGCAATTGCGAACCATG+AGG | + | chr3.4:65704552-65704571 | None:intergenic | 55.0% | |
| TCTGCAACCTATGTGGGGGT+TGG | - | chr3.4:65703888-65703907 | MS.gene05066:CDS | 55.0% | |
| TGAGCTGTTGCGGTACCACT+TGG | + | chr3.4:65703443-65703462 | None:intergenic | 55.0% | |
| ! | CTAGCCGGTTTAGCAGCATG+TGG | - | chr3.4:65704788-65704807 | MS.gene05066:CDS | 55.0% |
| ! | CTTGCTTGTGCAGGTGGGTT+TGG | - | chr3.4:65703032-65703051 | MS.gene05066:CDS | 55.0% |
| ! | CTTTGCGGCGTGTTTTTCGC+CGG | - | chr3.4:65705091-65705110 | MS.gene05066:CDS | 55.0% |
| ! | GGTGTCATGTGGCCTCTCAT+TGG | - | chr3.4:65703969-65703988 | MS.gene05066:CDS | 55.0% |
| ! | TTCGCTATTGGTGCTTGGGC+AGG | - | chr3.4:65704746-65704765 | MS.gene05066:CDS | 55.0% |
| !! | AAACGAGGGCGTTAGGTGCA+GGG | + | chr3.4:65705009-65705028 | None:intergenic | 55.0% |
| !! | GTAGGGGAGAGAGGAGCATT+TGG | + | chr3.4:65704476-65704495 | None:intergenic | 55.0% |
| !! | TAAACGAGGGCGTTAGGTGC+AGG | + | chr3.4:65705010-65705029 | None:intergenic | 55.0% |
| GCCGTGGCTTTCGACGTCAT+AGG | + | chr3.4:65702501-65702520 | None:intergenic | 60.0% | |
| GCTTGGGCAGGTGCGTCTAA+CGG | - | chr3.4:65704758-65704777 | MS.gene05066:CDS | 60.0% | |
| GGTGCAGGGTATGGTGAACC+AGG | + | chr3.4:65704995-65705014 | None:intergenic | 60.0% | |
| TCTAACGGCGGTGTCCTAGC+CGG | - | chr3.4:65704773-65704792 | MS.gene05066:CDS | 60.0% | |
| TGACGTCGAAAGCCACGGCA+TGG | - | chr3.4:65702502-65702521 | MS.gene05066:CDS | 60.0% | |
| ! | AGGGCGTTAGGTGCAGGGTA+TGG | + | chr3.4:65705004-65705023 | None:intergenic | 60.0% |
| CGAAAGCCACGGCATGGCTG+CGG | - | chr3.4:65702508-65702527 | MS.gene05066:CDS | 65.0% | |
| TGGGCAGGTGCGTCTAACGG+CGG | - | chr3.4:65704761-65704780 | MS.gene05066:CDS | 65.0% | |
| CGGCATGGCTGCGGTTGCAC+CGG | - | chr3.4:65702517-65702536 | MS.gene05066:CDS | 70.0% | |
| GTGCAACCGCAGCCATGCCG+TGG | + | chr3.4:65702517-65702536 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 65702485 | 65705447 | 65702485 | ID=MS.gene05066 |
| chr3.4 | mRNA | 65702485 | 65705447 | 65702485 | ID=MS.gene05066.t1;Parent=MS.gene05066 |
| chr3.4 | exon | 65705063 | 65705447 | 65705063 | ID=MS.gene05066.t1.exon1;Parent=MS.gene05066.t1 |
| chr3.4 | CDS | 65705063 | 65705447 | 65705063 | ID=cds.MS.gene05066.t1;Parent=MS.gene05066.t1 |
| chr3.4 | exon | 65704733 | 65704887 | 65704733 | ID=MS.gene05066.t1.exon2;Parent=MS.gene05066.t1 |
| chr3.4 | CDS | 65704733 | 65704887 | 65704733 | ID=cds.MS.gene05066.t1;Parent=MS.gene05066.t1 |
| chr3.4 | exon | 65704441 | 65704522 | 65704441 | ID=MS.gene05066.t1.exon3;Parent=MS.gene05066.t1 |
| chr3.4 | CDS | 65704441 | 65704522 | 65704441 | ID=cds.MS.gene05066.t1;Parent=MS.gene05066.t1 |
| chr3.4 | exon | 65704290 | 65704410 | 65704290 | ID=MS.gene05066.t1.exon4;Parent=MS.gene05066.t1 |
| chr3.4 | CDS | 65704290 | 65704410 | 65704290 | ID=cds.MS.gene05066.t1;Parent=MS.gene05066.t1 |
| chr3.4 | exon | 65703871 | 65704060 | 65703871 | ID=MS.gene05066.t1.exon5;Parent=MS.gene05066.t1 |
| chr3.4 | CDS | 65703871 | 65704060 | 65703871 | ID=cds.MS.gene05066.t1;Parent=MS.gene05066.t1 |
| chr3.4 | exon | 65702485 | 65703588 | 65702485 | ID=MS.gene05066.t1.exon6;Parent=MS.gene05066.t1 |
| chr3.4 | CDS | 65702485 | 65703588 | 65702485 | ID=cds.MS.gene05066.t1;Parent=MS.gene05066.t1 |
| Gene Sequence |
| Protein sequence |
