Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05068.t1 | RHN68031.1 | 89.9 | 691 | 56 | 3 | 1 | 678 | 1 | 690 | 0.00E+00 | 1227.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05068.t1 | Q9SHY2 | 76.2 | 667 | 140 | 6 | 26 | 676 | 22 | 685 | 1.6e-296 | 1019.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05068.t1 | A0A396ITK6 | 89.9 | 691 | 56 | 3 | 1 | 678 | 1 | 690 | 0.0e+00 | 1227.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45566 | MS.gene05068 | PPI |
| MS.gene05068 | MS.gene57831 | PPI |
| MS.gene37726 | MS.gene05068 | PPI |
| MS.gene05216 | MS.gene05068 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05068.t1 | MTR_5g091600 | 87.879 | 693 | 58 | 5 | 1 | 678 | 1 | 682 | 0.0 | 1194 |
| MS.gene05068.t1 | MTR_3g063520 | 89.725 | 691 | 57 | 3 | 1 | 678 | 1 | 690 | 0.0 | 1176 |
| MS.gene05068.t1 | MTR_3g063490 | 84.029 | 695 | 91 | 4 | 1 | 676 | 1 | 694 | 0.0 | 1155 |
| MS.gene05068.t1 | MTR_6g077870 | 72.139 | 664 | 173 | 3 | 26 | 678 | 50 | 712 | 0.0 | 994 |
| MS.gene05068.t1 | MTR_6g077870 | 70.833 | 552 | 149 | 3 | 138 | 678 | 1 | 551 | 0.0 | 814 |
| MS.gene05068.t1 | MTR_7g028250 | 57.489 | 661 | 245 | 9 | 34 | 669 | 30 | 679 | 0.0 | 764 |
| MS.gene05068.t1 | MTR_3g092090 | 54.697 | 660 | 275 | 6 | 20 | 663 | 12 | 663 | 0.0 | 737 |
| MS.gene05068.t1 | MTR_3g092090 | 53.523 | 667 | 274 | 7 | 2 | 652 | 6 | 652 | 0.0 | 720 |
| MS.gene05068.t1 | MTR_1g007580 | 51.407 | 675 | 295 | 9 | 19 | 666 | 4 | 672 | 0.0 | 702 |
| MS.gene05068.t1 | MTR_0312s0020 | 51.131 | 663 | 301 | 7 | 20 | 666 | 17 | 672 | 0.0 | 699 |
| MS.gene05068.t1 | MTR_1g007540 | 51.131 | 663 | 301 | 7 | 20 | 666 | 17 | 672 | 0.0 | 699 |
| MS.gene05068.t1 | MTR_1g077840 | 50.453 | 662 | 305 | 7 | 20 | 665 | 25 | 679 | 0.0 | 698 |
| MS.gene05068.t1 | MTR_5g091615 | 88.125 | 160 | 19 | 0 | 515 | 674 | 59 | 218 | 1.96e-89 | 281 |
| MS.gene05068.t1 | MTR_1626s0010 | 50.847 | 236 | 112 | 2 | 207 | 442 | 4 | 235 | 1.45e-80 | 256 |
| MS.gene05068.t1 | MTR_0312s0050 | 49.593 | 123 | 51 | 3 | 16 | 127 | 1 | 123 | 4.63e-32 | 120 |
| MS.gene05068.t1 | MTR_2g083230 | 82.609 | 46 | 5 | 1 | 129 | 171 | 34 | 79 | 4.76e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05068.t1 | AT1G65730 | 75.893 | 672 | 141 | 7 | 21 | 676 | 19 | 685 | 0.0 | 1036 |
| MS.gene05068.t1 | AT3G17650 | 71.429 | 665 | 173 | 4 | 29 | 676 | 46 | 710 | 0.0 | 949 |
| MS.gene05068.t1 | AT3G17650 | 71.429 | 665 | 173 | 4 | 29 | 676 | 46 | 710 | 0.0 | 949 |
| MS.gene05068.t1 | AT1G48370 | 70.871 | 666 | 176 | 4 | 29 | 676 | 55 | 720 | 0.0 | 931 |
| MS.gene05068.t1 | AT3G27020 | 57.357 | 666 | 263 | 6 | 23 | 669 | 13 | 676 | 0.0 | 768 |
| MS.gene05068.t1 | AT1G48370 | 69.479 | 557 | 152 | 4 | 138 | 676 | 1 | 557 | 0.0 | 756 |
| MS.gene05068.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene05068.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene05068.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene05068.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene05068.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene05068.t1 | AT5G41000 | 54.799 | 646 | 273 | 5 | 35 | 663 | 24 | 667 | 0.0 | 727 |
| MS.gene05068.t1 | AT4G24120 | 52.941 | 680 | 289 | 7 | 1 | 665 | 9 | 672 | 0.0 | 724 |
| MS.gene05068.t1 | AT5G24380 | 52.959 | 659 | 288 | 6 | 22 | 663 | 7 | 660 | 0.0 | 712 |
| MS.gene05068.t1 | AT5G41000 | 52.632 | 646 | 262 | 6 | 35 | 663 | 24 | 642 | 0.0 | 686 |
| MS.gene05068.t1 | AT5G53550 | 58.058 | 515 | 198 | 4 | 160 | 664 | 1 | 507 | 0.0 | 602 |
| MS.gene05068.t1 | AT5G41000 | 53.955 | 493 | 214 | 4 | 182 | 663 | 1 | 491 | 0.0 | 553 |
| MS.gene05068.t1 | AT5G45450 | 65.138 | 218 | 70 | 1 | 459 | 676 | 1 | 212 | 1.71e-95 | 294 |
Find 161 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTTGTTGTTAGCTTTCT+TGG | 0.055871 | 3.4:-65668821 | MS.gene05068:CDS |
| AATGTTTCTGCTGGGTTGTT+AGG | 0.216597 | 3.4:-65669251 | MS.gene05068:CDS |
| GAAGCTTGATATTGTTTATT+TGG | 0.238786 | 3.4:-65666731 | MS.gene05068:CDS |
| GTTCTTGGCACAACTCTTAT+AGG | 0.241739 | 3.4:-65667572 | MS.gene05068:CDS |
| GCTAAGGTTGATAAGTTCTT+AGG | 0.244541 | 3.4:-65666552 | MS.gene05068:CDS |
| GAGGAGATCTCTGTGGAAAA+AGG | 0.248700 | 3.4:-65669410 | MS.gene05068:CDS |
| ATGTTTGTGAGCCAAGTTAT+TGG | 0.272519 | 3.4:-65667074 | MS.gene05068:CDS |
| GCCGGTGCCATGATTATTAA+TGG | 0.276061 | 3.4:-65666861 | MS.gene05068:CDS |
| TACAACTTTGGGAAAGTTCT+TGG | 0.281237 | 3.4:-65667587 | MS.gene05068:CDS |
| TGATATGTGGAGATGGAATT+TGG | 0.283833 | 3.4:-65666653 | MS.gene05068:CDS |
| AACGAAATATTGGTTATATA+TGG | 0.289135 | 3.4:+65668049 | None:intergenic |
| ACCGATCAACAACGAAATAT+TGG | 0.300050 | 3.4:+65668039 | None:intergenic |
| CCCTCATGGTTCGCAATTGC+AGG | 0.302996 | 3.4:-65667422 | MS.gene05068:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 3.4:+65669170 | None:intergenic |
| CCTTCGTTGAATGTTTCTGC+TGG | 0.339721 | 3.4:-65669260 | MS.gene05068:CDS |
| AAATTAGCCATCTTCGCTAT+TGG | 0.346002 | 3.4:-65667236 | MS.gene05068:CDS |
| TGATCGGTGGAATTCTTTCA+TGG | 0.350906 | 3.4:-65668024 | MS.gene05068:CDS |
| CCATCTTCGCTATTGGTGCT+TGG | 0.352652 | 3.4:-65667229 | MS.gene05068:CDS |
| TTATTTGGCAGAAGGTTGAT+AGG | 0.352931 | 3.4:-65666716 | MS.gene05068:CDS |
| AAGTAGCTTCCAATGTAAAA+TGG | 0.358086 | 3.4:+65666774 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 3.4:-65667620 | MS.gene05068:CDS |
| TTTGCAAACTTCCCCACATT+TGG | 0.363476 | 3.4:-65668371 | MS.gene05068:CDS |
| AGGGTTAAGGCTGATGCATT+TGG | 0.365863 | 3.4:-65666696 | MS.gene05068:CDS |
| TAGGTTTGTATAAACAATTA+TGG | 0.370836 | 3.4:-65667553 | MS.gene05068:CDS |
| GGGTTTGGTAGCTACTTGTT+TGG | 0.371080 | 3.4:-65668923 | MS.gene05068:CDS |
| GACAAGAATTTCATGCAAAT+AGG | 0.377015 | 3.4:+65666588 | None:intergenic |
| TGGCTATTCTACAACGCTTT+CGG | 0.377582 | 3.4:-65667014 | MS.gene05068:CDS |
| GTAGGGGAGAGAGGAGCATT+TGG | 0.378591 | 3.4:+65667497 | None:intergenic |
| GACACCACATGCTGCTAAAC+CGG | 0.383267 | 3.4:+65667178 | None:intergenic |
| TGGCTCACAAACATGGATTT+CGG | 0.390640 | 3.4:+65667083 | None:intergenic |
| GCCAATGATGTTAAGAGTCT+TGG | 0.398551 | 3.4:-65668866 | MS.gene05068:CDS |
| GTGATGGTCTATACAACTTT+GGG | 0.399347 | 3.4:-65667598 | MS.gene05068:CDS |
| CTTGCTTGTGTAGGTGGGTT+TGG | 0.399991 | 3.4:-65668938 | MS.gene05068:intron |
| GGTGATGGTCTATACAACTT+TGG | 0.401168 | 3.4:-65667599 | MS.gene05068:CDS |
| GTTTGGCACCTTCTGATGTA+TGG | 0.401190 | 3.4:+65668492 | None:intergenic |
| ATGAAGTTGAATCTCACAAC+TGG | 0.401497 | 3.4:-65669290 | MS.gene05068:CDS |
| TTCGCTATTGGTGCTTGGGC+AGG | 0.404021 | 3.4:-65667224 | MS.gene05068:CDS |
| TTTCGATAAACGAGGGCGTT+AGG | 0.407080 | 3.4:+65666957 | None:intergenic |
| TGTTCCTACGTGGCAGAAAC+AGG | 0.407557 | 3.4:-65669372 | MS.gene05068:CDS |
| CTGCTTTGTTTGAGATCAGC+AGG | 0.407652 | 3.4:+65667956 | None:intergenic |
| CATCTTCGCTATTGGTGCTT+GGG | 0.418097 | 3.4:-65667228 | MS.gene05068:CDS |
| GATGTTAAGAGTCTTGGTTT+AGG | 0.418370 | 3.4:-65668860 | MS.gene05068:CDS |
| CCCAGCTTTCTCAAGCAACT+TGG | 0.422207 | 3.4:+65669205 | None:intergenic |
| GCAGAAGGTTGATAGGGTTA+AGG | 0.423744 | 3.4:-65666709 | MS.gene05068:CDS |
| CTTATGCAAGACTTCAAAAC+AGG | 0.423970 | 3.4:-65667125 | MS.gene05068:CDS |
| GGCAGAAACAGGTTACGGTT+AGG | 0.425396 | 3.4:-65669361 | MS.gene05068:CDS |
| TAAACGAGGGCGTTAGGTGC+AGG | 0.426821 | 3.4:+65666963 | None:intergenic |
| CGGCATGGCTGCGGTTGCAC+CGG | 0.427222 | 3.4:-65669453 | MS.gene05068:CDS |
| TGGTCCCTTGCATCGACTTA+CGG | 0.438370 | 3.4:-65667260 | MS.gene05068:CDS |
| ATGAGGGGATTTGATCTTTG+AGG | 0.439237 | 3.4:+65667438 | None:intergenic |
| GCAGAAACAGGTTACGGTTA+GGG | 0.440923 | 3.4:-65669360 | MS.gene05068:CDS |
| ACCAAGACTCTTAACATCAT+TGG | 0.446254 | 3.4:+65668865 | None:intergenic |
| ATGTTTCTGCTGGGTTGTTA+GGG | 0.449011 | 3.4:-65669250 | MS.gene05068:CDS |
| CCATAGCAGTTCCAATAACT+TGG | 0.450305 | 3.4:+65667063 | None:intergenic |
| TTCGGTACTCTTGGTCAACC+TGG | 0.450819 | 3.4:-65666996 | MS.gene05068:CDS |
| GATCGGTGGAATTCTTTCAT+GGG | 0.451529 | 3.4:-65668023 | MS.gene05068:CDS |
| TTTGGATCAGCTGTTGCGTC+CGG | 0.451755 | 3.4:-65666678 | MS.gene05068:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.451917 | 3.4:-65669137 | MS.gene05068:CDS |
| CAACTATATTCCTGTTCCTA+TGG | 0.451960 | 3.4:-65666808 | MS.gene05068:CDS |
| GGTGTCATGTGGCCTCTCAT+TGG | 0.456041 | 3.4:-65668001 | MS.gene05068:CDS |
| TTAAGAGTCTTGGTTTAGGA+TGG | 0.456468 | 3.4:-65668856 | MS.gene05068:CDS |
| TATCGAAACATGGCTATACT+AGG | 0.461201 | 3.4:-65666942 | MS.gene05068:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.462139 | 3.4:-65667938 | MS.gene05068:CDS |
| CCAAGCACCAATAGCGAAGA+TGG | 0.462172 | 3.4:+65667229 | None:intergenic |
| CCAAGTTATTGGAACTGCTA+TGG | 0.469421 | 3.4:-65667063 | MS.gene05068:CDS |
| CTTCGTTGAATGTTTCTGCT+GGG | 0.472472 | 3.4:-65669259 | MS.gene05068:CDS |
| CTCAAACAAAGCAGCTTACA+TGG | 0.473967 | 3.4:-65667947 | MS.gene05068:CDS |
| ACCAATATTTCGTTGTTGAT+CGG | 0.478557 | 3.4:-65668040 | MS.gene05068:CDS |
| GCCGTGGCTTTCGACGTCAT+AGG | 0.479696 | 3.4:+65669472 | None:intergenic |
| TACAACGCTTTCGGTACTCT+TGG | 0.482640 | 3.4:-65667005 | MS.gene05068:CDS |
| CTTTAGCTGGTGGAAAATGA+AGG | 0.487926 | 3.4:+65667361 | None:intergenic |
| ACCAAGTTGCTTGAGAAAGC+TGG | 0.489658 | 3.4:-65669206 | MS.gene05068:CDS |
| AAACTTCCCCACATTTGGTC+TGG | 0.492239 | 3.4:-65668366 | MS.gene05068:CDS |
| TGATGTAATACCACTTTAGC+TGG | 0.492701 | 3.4:+65667348 | None:intergenic |
| CCAAATATTGCAAAACAAGC+TGG | 0.494078 | 3.4:-65668893 | MS.gene05068:CDS |
| CAAGTTATTGGAACTGCTAT+GGG | 0.494211 | 3.4:-65667062 | MS.gene05068:CDS |
| GAGAGGAGCATTTGGATCAT+CGG | 0.497596 | 3.4:+65667505 | None:intergenic |
| GCTTGGGCAGGTGCGTCTAA+CGG | 0.499684 | 3.4:-65667212 | MS.gene05068:CDS |
| TTCTTTCATGGGGTGTCATG+TGG | 0.500744 | 3.4:-65668012 | MS.gene05068:CDS |
| TCCATCTCCACATATCAAAC+CGG | 0.501705 | 3.4:+65666659 | None:intergenic |
| ATAGCCATAGCCATAGGAAC+AGG | 0.504745 | 3.4:+65666798 | None:intergenic |
| GATATTGTTTATTTGGCAGA+AGG | 0.507191 | 3.4:-65666724 | MS.gene05068:CDS |
| TTTGCTATTGATATGTGTGT+TGG | 0.507636 | 3.4:-65666753 | MS.gene05068:CDS |
| AATAACAGTATTCTCCTGTC+TGG | 0.507862 | 3.4:+65669163 | None:intergenic |
| CCGTGGCTTTCGACGTCATA+GGG | 0.509154 | 3.4:+65669473 | None:intergenic |
| TATTCCTGTTCCTATGGCTA+TGG | 0.510164 | 3.4:-65666802 | MS.gene05068:CDS |
| CGAAAGCCACGGCATGGCTG+CGG | 0.511258 | 3.4:-65669462 | MS.gene05068:CDS |
| TGTCGTCGAATGAAAGTGTA+GGG | 0.513370 | 3.4:+65667480 | None:intergenic |
| TGAGCTGTTGCGGTACCACT+TGG | 0.516027 | 3.4:+65668530 | None:intergenic |
| TCTAACGGCGGTGTCCTAGC+CGG | 0.520318 | 3.4:-65667197 | MS.gene05068:CDS |
| TATTTGGCAGAAGGTTGATA+GGG | 0.521362 | 3.4:-65666715 | MS.gene05068:CDS |
| GCGAACACCATTAATAATCA+TGG | 0.526943 | 3.4:+65666854 | None:intergenic |
| GAAAATGAAGGGGATGGTAA+TGG | 0.530222 | 3.4:+65667373 | None:intergenic |
| AATAACTTGGCTCACAAACA+TGG | 0.530485 | 3.4:+65667076 | None:intergenic |
| GTTGCGTCCGGTTTGATATG+TGG | 0.530851 | 3.4:-65666666 | MS.gene05068:CDS |
| TTCAGTGGTTCCACTCCGAA+AGG | 0.534003 | 3.4:-65668792 | MS.gene05068:intron |
| AATATTTCGTTGTTGATCGG+TGG | 0.535914 | 3.4:-65668037 | MS.gene05068:CDS |
| CATAGGAACAGGAATATAGT+TGG | 0.536080 | 3.4:+65666809 | None:intergenic |
| TGCCTATGGTTGTGGACTAA+CGG | 0.537350 | 3.4:-65667285 | MS.gene05068:CDS |
| AATGGTGTTCGCGACTATGT+CGG | 0.539051 | 3.4:-65666843 | MS.gene05068:CDS |
| CGCCCTCGTTTATCGAAACA+TGG | 0.542039 | 3.4:-65666952 | MS.gene05068:CDS |
| AATGAAAGTGTAGGGGAGAG+AGG | 0.542386 | 3.4:+65667488 | None:intergenic |
| ACCATTAATAATCATGGCAC+CGG | 0.545307 | 3.4:+65666860 | None:intergenic |
| GTGCAACCGCAGCCATGCCG+TGG | 0.547128 | 3.4:+65669456 | None:intergenic |
| GCATTGCAAAAGGCTAGTGC+AGG | 0.548633 | 3.4:+65667305 | None:intergenic |
| ATAGGCTTCCAGACCAAATG+TGG | 0.549567 | 3.4:+65668358 | None:intergenic |
| TTGATCTTTGAGGAACATCT+CGG | 0.554704 | 3.4:+65667448 | None:intergenic |
| TTCAGTGCTAGTGATGATTG+TGG | 0.556606 | 3.4:-65668395 | MS.gene05068:CDS |
| ATGGTTGTGGACTAACGGAT+TGG | 0.556934 | 3.4:-65667280 | MS.gene05068:CDS |
| ATTTGTGAGTCTCATGTTGT+CGG | 0.557992 | 3.4:-65669333 | MS.gene05068:CDS |
| ACAACCATAGGCATTGCAAA+AGG | 0.564312 | 3.4:+65667295 | None:intergenic |
| AGGGCGTTAGGTGCAGGGTA+TGG | 0.565245 | 3.4:+65666969 | None:intergenic |
| AACAGTTTCCATACATCAGA+AGG | 0.565961 | 3.4:-65668500 | MS.gene05068:intron |
| ATCGGTGGAATTCTTTCATG+GGG | 0.567187 | 3.4:-65668022 | MS.gene05068:CDS |
| AAACGAGGGCGTTAGGTGCA+GGG | 0.569241 | 3.4:+65666964 | None:intergenic |
| TTGTCGTCGAATGAAAGTGT+AGG | 0.575329 | 3.4:+65667479 | None:intergenic |
| GCAAGAGCAAGAAAAGAGCT+AGG | 0.577753 | 3.4:+65666624 | None:intergenic |
| GGTGCAGGGTATGGTGAACC+AGG | 0.579015 | 3.4:+65666978 | None:intergenic |
| CCAAGTTGCTTGAGAAAGCT+GGG | 0.580499 | 3.4:-65669205 | MS.gene05068:CDS |
| CTGCAATTGCGAACCATGAG+GGG | 0.583286 | 3.4:+65667423 | None:intergenic |
| ATCCGTTAGTCCACAACCAT+AGG | 0.586179 | 3.4:+65667283 | None:intergenic |
| TTTAGCTGGTGGAAAATGAA+GGG | 0.586752 | 3.4:+65667362 | None:intergenic |
| CAAAACAGGTTACATGACAA+TGG | 0.590728 | 3.4:-65667111 | MS.gene05068:CDS |
| AAGAATTTCATGCAAATAGG+TGG | 0.591699 | 3.4:+65666591 | None:intergenic |
| GTCAAGAGCAGCAAATGCTA+AGG | 0.594984 | 3.4:-65666568 | MS.gene05068:CDS |
| AATGGTATAGCCATAGCCAT+AGG | 0.595250 | 3.4:+65666792 | None:intergenic |
| CCCTATGACGTCGAAAGCCA+CGG | 0.598986 | 3.4:-65669473 | MS.gene05068:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 3.4:-65667614 | MS.gene05068:CDS |
| AAACATGGCTATACTAGGTG+TGG | 0.601524 | 3.4:-65666937 | MS.gene05068:CDS |
| CCTGCAATTGCGAACCATGA+GGG | 0.604092 | 3.4:+65667422 | None:intergenic |
| TCCGGTTTGATATGTGGAGA+TGG | 0.612716 | 3.4:-65666660 | MS.gene05068:CDS |
| TACGTGGCAGAAACAGGTTA+CGG | 0.614426 | 3.4:-65669366 | MS.gene05068:CDS |
| TCAAAGATCAAATCCCCTCA+TGG | 0.616210 | 3.4:-65667436 | MS.gene05068:CDS |
| TGACGTCGAAAGCCACGGCA+TGG | 0.618397 | 3.4:-65669468 | MS.gene05068:CDS |
| CACATGCTGCTAAACCGGCT+AGG | 0.621749 | 3.4:+65667183 | None:intergenic |
| TGCTTTGTTTGAGATCAGCA+GGG | 0.627385 | 3.4:+65667957 | None:intergenic |
| TGTAATACCACTTTAGCTGG+TGG | 0.629875 | 3.4:+65667351 | None:intergenic |
| ATGGCTATACTAGGTGTGGA+CGG | 0.647638 | 3.4:-65666933 | MS.gene05068:CDS |
| TAGGCTTCCAGACCAAATGT+GGG | 0.650528 | 3.4:+65668359 | None:intergenic |
| TTAGCTGGTGGAAAATGAAG+GGG | 0.653662 | 3.4:+65667363 | None:intergenic |
| CTGGTGGAAAATGAAGGGGA+TGG | 0.654258 | 3.4:+65667367 | None:intergenic |
| TGGGCAGGTGCGTCTAACGG+CGG | 0.655359 | 3.4:-65667209 | MS.gene05068:CDS |
| GTTGATAAGATGAGCTGTTG+CGG | 0.660296 | 3.4:+65668520 | None:intergenic |
| AGTTGTTCATCATTCAACAC+CGG | 0.662303 | 3.4:+65669434 | None:intergenic |
| GCCTGCAATTGCGAACCATG+AGG | 0.668031 | 3.4:+65667421 | None:intergenic |
| TAGTACTGTACCTTTCGGAG+TGG | 0.669012 | 3.4:+65668782 | None:intergenic |
| TGAAGTTGAATCTCACAACT+GGG | 0.670966 | 3.4:-65669289 | MS.gene05068:CDS |
| GTTGAATGATGAACAACTTG+AGG | 0.685365 | 3.4:-65669429 | MS.gene05068:CDS |
| TAGCCATGTTTCGATAAACG+AGG | 0.685399 | 3.4:+65666949 | None:intergenic |
| TTCAAACTGACATATCCAAG+TGG | 0.687798 | 3.4:-65668545 | MS.gene05068:CDS |
| TAGAATAGCCAGAAAACACA+CGG | 0.691145 | 3.4:+65667026 | None:intergenic |
| ACAACTTGAGGAGATCTCTG+TGG | 0.691473 | 3.4:-65669417 | MS.gene05068:CDS |
| GCTAGTGGAATTGCATTCAG+CGG | 0.695424 | 3.4:-65669122 | MS.gene05068:intron |
| CTAGCCGGTTTAGCAGCATG+TGG | 0.697720 | 3.4:-65667182 | MS.gene05068:CDS |
| AGCCATGTTTCGATAAACGA+GGG | 0.699106 | 3.4:+65666950 | None:intergenic |
| CCAGCAGAAACATTCAACGA+AGG | 0.700492 | 3.4:+65669260 | None:intergenic |
| AGGCTTCCAGACCAAATGTG+GGG | 0.704515 | 3.4:+65668360 | None:intergenic |
| GTCGTCGAATGAAAGTGTAG+GGG | 0.705258 | 3.4:+65667481 | None:intergenic |
| GTAACCTGTTTCTGCCACGT+AGG | 0.720663 | 3.4:+65669368 | None:intergenic |
| AAGGAACATCTGTTCCTACG+TGG | 0.720715 | 3.4:-65669382 | MS.gene05068:CDS |
| AGTTGCTTGAGAAAGCTGGG+TGG | 0.725449 | 3.4:-65669202 | MS.gene05068:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGAAAGAATTTAAAA+TGG | - | chr3.4:65667729-65667748 | MS.gene05068:intron | 10.0% |
| !! | AACATCAAATTAAAACTAAA+TGG | + | chr3.4:65667438-65667457 | None:intergenic | 15.0% |
| !! | TATTATTTAATGTACATAAC+AGG | - | chr3.4:65667910-65667929 | MS.gene05068:intron | 15.0% |
| !! | AAAGTATACTTACAAAAAAG+TGG | + | chr3.4:65668201-65668220 | None:intergenic | 20.0% |
| !! | TAGGTTTGTATAAACAATTA+TGG | - | chr3.4:65668477-65668496 | MS.gene05068:intron | 20.0% |
| !!! | AACGAAATATTGGTTATATA+TGG | + | chr3.4:65667984-65668003 | None:intergenic | 20.0% |
| !!! | AACTTGTTCTAAAAACTATT+AGG | + | chr3.4:65666993-65667012 | None:intergenic | 20.0% |
| !!! | ACTTGTTCTAAAAACTATTA+GGG | + | chr3.4:65666992-65667011 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGTAAGTATACTT+TGG | - | chr3.4:65668200-65668219 | MS.gene05068:intron | 20.0% |
| !!! | GGGTTAAATTGATTTTATTA+AGG | + | chr3.4:65667298-65667317 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATTGATTGAACA+AGG | + | chr3.4:65667323-65667342 | None:intergenic | 20.0% |
| ! | AGATTTGTCAACAACAAATA+AGG | + | chr3.4:65667059-65667078 | None:intergenic | 25.0% |
| ! | CAACTTAAAACACAGTAAAT+TGG | - | chr3.4:65668260-65668279 | MS.gene05068:intron | 25.0% |
| ! | CAATAGAATACATTATCAAC+CGG | + | chr3.4:65668350-65668369 | None:intergenic | 25.0% |
| ! | GAAGCTTGATATTGTTTATT+TGG | - | chr3.4:65669299-65669318 | MS.gene05068:CDS | 25.0% |
| ! | TAAAACAATTGAACATGACT+TGG | - | chr3.4:65667336-65667355 | MS.gene05068:CDS | 25.0% |
| ! | TTAAATTGATTGAACAAGGA+CGG | + | chr3.4:65667319-65667338 | None:intergenic | 25.0% |
| !!! | TGAATCGATTTTTAAAACGT+GGG | - | chr3.4:65667380-65667399 | MS.gene05068:CDS | 25.0% |
| !!! | TTGAATCGATTTTTAAAACG+TGG | - | chr3.4:65667379-65667398 | MS.gene05068:CDS | 25.0% |
| AAAAACTGCATCATACTTTG+CGG | - | chr3.4:65669136-65669155 | MS.gene05068:CDS | 30.0% | |
| AACAATCATAATCTGCAACA+AGG | + | chr3.4:65667462-65667481 | None:intergenic | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | - | chr3.4:65667788-65667807 | MS.gene05068:intron | 30.0% | |
| AAGAATTTCATGCAAATAGG+TGG | + | chr3.4:65669442-65669461 | None:intergenic | 30.0% | |
| AAGTAGCTTCCAATGTAAAA+TGG | + | chr3.4:65669259-65669278 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | - | chr3.4:65668289-65668308 | MS.gene05068:intron | 30.0% | |
| ACCAATATTTCGTTGTTGAT+CGG | - | chr3.4:65667990-65668009 | MS.gene05068:CDS | 30.0% | |
| AGTCAAGTATTAAACTGAAG+TGG | + | chr3.4:65666946-65666965 | None:intergenic | 30.0% | |
| GACAAGAATTTCATGCAAAT+AGG | + | chr3.4:65669445-65669464 | None:intergenic | 30.0% | |
| GATATTGTTTATTTGGCAGA+AGG | - | chr3.4:65669306-65669325 | MS.gene05068:CDS | 30.0% | |
| GATTGAAACAAGTACAAAAC+TGG | - | chr3.4:65668282-65668301 | MS.gene05068:intron | 30.0% | |
| TAAATTGATTGAACAAGGAC+GGG | + | chr3.4:65667318-65667337 | None:intergenic | 30.0% | |
| TTGTATTCTCTCTAAACTAC+AGG | - | chr3.4:65668382-65668401 | MS.gene05068:CDS | 30.0% | |
| ! | ATGGCTATACCATTTTACAT+TGG | - | chr3.4:65669247-65669266 | MS.gene05068:CDS | 30.0% |
| ! | CAAAGTATGATGCAGTTTTT+CGG | + | chr3.4:65669136-65669155 | None:intergenic | 30.0% |
| ! | TCTAAACTACAGGTTTTCAT+AGG | - | chr3.4:65668392-65668411 | MS.gene05068:CDS | 30.0% |
| ! | TTTGATAGTACTGTACCTTT+CGG | + | chr3.4:65667256-65667275 | None:intergenic | 30.0% |
| !! | CGGTTGATAATGTATTCTAT+TGG | - | chr3.4:65668348-65668367 | MS.gene05068:intron | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | - | chr3.4:65667209-65667228 | MS.gene05068:CDS | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | - | chr3.4:65669277-65669296 | MS.gene05068:CDS | 30.0% |
| !!! | TAGATCTTTTTCAATGTGAC+CGG | - | chr3.4:65668328-65668347 | MS.gene05068:intron | 30.0% |
| AAATTAGCCATCTTCGCTAT+TGG | - | chr3.4:65668794-65668813 | MS.gene05068:CDS | 35.0% | |
| AACAGTTTCCATACATCAGA+AGG | - | chr3.4:65667530-65667549 | MS.gene05068:CDS | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | + | chr3.4:65666870-65666889 | None:intergenic | 35.0% | |
| AATAACTTGGCTCACAAACA+TGG | + | chr3.4:65668957-65668976 | None:intergenic | 35.0% | |
| AATATTTCGTTGTTGATCGG+TGG | - | chr3.4:65667993-65668012 | MS.gene05068:CDS | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | + | chr3.4:65667168-65667187 | None:intergenic | 35.0% | |
| ACCATTAATAATCATGGCAC+CGG | + | chr3.4:65669173-65669192 | None:intergenic | 35.0% | |
| ACCGATCAACAACGAAATAT+TGG | + | chr3.4:65667994-65668013 | None:intergenic | 35.0% | |
| AGTTGTTCATCATTCAACAC+CGG | + | chr3.4:65666599-65666618 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | - | chr3.4:65668416-65668435 | MS.gene05068:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | - | chr3.4:65668410-65668429 | MS.gene05068:CDS | 35.0% | |
| ATGAAGTTGAATCTCACAAC+TGG | - | chr3.4:65666740-65666759 | MS.gene05068:CDS | 35.0% | |
| ATGTTTGTGAGCCAAGTTAT+TGG | - | chr3.4:65668956-65668975 | MS.gene05068:intron | 35.0% | |
| ATTTGTGAGTCTCATGTTGT+CGG | - | chr3.4:65666697-65666716 | MS.gene05068:CDS | 35.0% | |
| CAAAACAGGTTACATGACAA+TGG | - | chr3.4:65668919-65668938 | MS.gene05068:CDS | 35.0% | |
| CAACTATATTCCTGTTCCTA+TGG | - | chr3.4:65669222-65669241 | MS.gene05068:CDS | 35.0% | |
| CAAGTTATTGGAACTGCTAT+GGG | - | chr3.4:65668968-65668987 | MS.gene05068:intron | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | + | chr3.4:65667793-65667812 | None:intergenic | 35.0% | |
| CATAGGAACAGGAATATAGT+TGG | + | chr3.4:65669224-65669243 | None:intergenic | 35.0% | |
| CCAAATATTGCAAAACAAGC+TGG | - | chr3.4:65667137-65667156 | MS.gene05068:CDS | 35.0% | |
| CTTATGCAAGACTTCAAAAC+AGG | - | chr3.4:65668905-65668924 | MS.gene05068:CDS | 35.0% | |
| GAACATAGAGGTTTCAGTTT+CGG | + | chr3.4:65667781-65667800 | None:intergenic | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | - | chr3.4:65667170-65667189 | MS.gene05068:CDS | 35.0% | |
| GCGAACACCATTAATAATCA+TGG | + | chr3.4:65669179-65669198 | None:intergenic | 35.0% | |
| GTGATGGTCTATACAACTTT+GGG | - | chr3.4:65668432-65668451 | MS.gene05068:CDS | 35.0% | |
| GTTGAATGATGAACAACTTG+AGG | - | chr3.4:65666601-65666620 | MS.gene05068:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | + | chr3.4:65667558-65667577 | None:intergenic | 35.0% | |
| TAGAATAGCCAGAAAACACA+CGG | + | chr3.4:65669007-65669026 | None:intergenic | 35.0% | |
| TATCGAAACATGGCTATACT+AGG | - | chr3.4:65669088-65669107 | MS.gene05068:intron | 35.0% | |
| TGAAGTTGAATCTCACAACT+GGG | - | chr3.4:65666741-65666760 | MS.gene05068:CDS | 35.0% | |
| TGATATGTGGAGATGGAATT+TGG | - | chr3.4:65669377-65669396 | MS.gene05068:CDS | 35.0% | |
| TGATGTAATACCACTTTAGC+TGG | + | chr3.4:65668685-65668704 | None:intergenic | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | - | chr3.4:65667174-65667193 | MS.gene05068:CDS | 35.0% | |
| TTCAAACTGACATATCCAAG+TGG | - | chr3.4:65667485-65667504 | MS.gene05068:CDS | 35.0% | |
| TTTAGCTGGTGGAAAATGAA+GGG | + | chr3.4:65668671-65668690 | None:intergenic | 35.0% | |
| ! | ATTTTTCTGCAACCTATGTG+GGG | - | chr3.4:65667943-65667962 | MS.gene05068:CDS | 35.0% |
| ! | GATTTTTCTGCAACCTATGT+GGG | - | chr3.4:65667942-65667961 | MS.gene05068:CDS | 35.0% |
| ! | GGTTTTTCTTTGTGAAGACA+TGG | - | chr3.4:65666801-65666820 | MS.gene05068:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | - | chr3.4:65666853-65666872 | MS.gene05068:CDS | 35.0% |
| ! | TACAACTTTGGGAAAGTTCT+TGG | - | chr3.4:65668443-65668462 | MS.gene05068:CDS | 35.0% |
| ! | TGATTTTTCTGCAACCTATG+TGG | - | chr3.4:65667941-65667960 | MS.gene05068:CDS | 35.0% |
| ! | TTATTTGGCAGAAGGTTGAT+AGG | - | chr3.4:65669314-65669333 | MS.gene05068:CDS | 35.0% |
| ! | TTGATCTTTGAGGAACATCT+CGG | + | chr3.4:65668585-65668604 | None:intergenic | 35.0% |
| !! | AAGAAGCAAGTAAAAGCACT+TGG | - | chr3.4:65667566-65667585 | MS.gene05068:CDS | 35.0% |
| !! | GCTAAGGTTGATAAGTTCTT+AGG | - | chr3.4:65669478-65669497 | MS.gene05068:CDS | 35.0% |
| !! | TATTTGGCAGAAGGTTGATA+GGG | - | chr3.4:65669315-65669334 | MS.gene05068:CDS | 35.0% |
| !! | TTGGTGCTAAAAAAGGAGAT+TGG | - | chr3.4:65668048-65668067 | MS.gene05068:CDS | 35.0% |
| !!! | AGTCACGTACTTGTTTTGAT+AGG | + | chr3.4:65667693-65667712 | None:intergenic | 35.0% |
| !!! | CCAGCTTGTTTTGCAATATT+TGG | + | chr3.4:65667140-65667159 | None:intergenic | 35.0% |
| !!! | CGATTTTTAAAACGTGGGAT+GGG | - | chr3.4:65667385-65667404 | MS.gene05068:CDS | 35.0% |
| !!! | CTTCTCCTTTAGCTTTTTGT+GGG | - | chr3.4:65667595-65667614 | MS.gene05068:CDS | 35.0% |
| !!! | TCGATTTTTAAAACGTGGGA+TGG | - | chr3.4:65667384-65667403 | MS.gene05068:CDS | 35.0% |
| !!! | TCTTCTCCTTTAGCTTTTTG+TGG | - | chr3.4:65667594-65667613 | MS.gene05068:CDS | 35.0% |
| !!! | TTCTCCTTTAGCTTTTTGTG+GGG | - | chr3.4:65667596-65667615 | MS.gene05068:CDS | 35.0% |
| AAACATGGCTATACTAGGTG+TGG | - | chr3.4:65669093-65669112 | MS.gene05068:intron | 40.0% | |
| AATGGTATAGCCATAGCCAT+AGG | + | chr3.4:65669241-65669260 | None:intergenic | 40.0% | |
| AGCCATGTTTCGATAAACGA+GGG | + | chr3.4:65669083-65669102 | None:intergenic | 40.0% | |
| AGGAGATCTCTGTGGAAAAA+GGG | - | chr3.4:65666621-65666640 | MS.gene05068:CDS | 40.0% | |
| ATAGAGGTTTCAGTTTCGGT+CGG | + | chr3.4:65667777-65667796 | None:intergenic | 40.0% | |
| ATCGGTGGAATTCTTTCATG+GGG | - | chr3.4:65668008-65668027 | MS.gene05068:CDS | 40.0% | |
| ATGAGGGGATTTGATCTTTG+AGG | + | chr3.4:65668595-65668614 | None:intergenic | 40.0% | |
| ATTTGCTTGCTTGTGTAGGT+GGG | - | chr3.4:65667087-65667106 | MS.gene05068:CDS | 40.0% | |
| CCAAGTTATTGGAACTGCTA+TGG | - | chr3.4:65668967-65668986 | MS.gene05068:intron | 40.0% | |
| CCATAGCAGTTCCAATAACT+TGG | + | chr3.4:65668970-65668989 | None:intergenic | 40.0% | |
| CTCAAACAAAGCAGCTTACA+TGG | - | chr3.4:65668083-65668102 | MS.gene05068:CDS | 40.0% | |
| CTTTAGCTGGTGGAAAATGA+AGG | + | chr3.4:65668672-65668691 | None:intergenic | 40.0% | |
| GAAAATGAAGGGGATGGTAA+TGG | + | chr3.4:65668660-65668679 | None:intergenic | 40.0% | |
| GAAACCCCACAAAAAGCTAA+AGG | + | chr3.4:65667603-65667622 | None:intergenic | 40.0% | |
| GATCGGTGGAATTCTTTCAT+GGG | - | chr3.4:65668007-65668026 | MS.gene05068:CDS | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | - | chr3.4:65667164-65667183 | MS.gene05068:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | + | chr3.4:65666863-65666882 | None:intergenic | 40.0% | |
| GTTCTTGGCACAACTCTTAT+AGG | - | chr3.4:65668458-65668477 | MS.gene05068:intron | 40.0% | |
| TAGCCATGTTTCGATAAACG+AGG | + | chr3.4:65669084-65669103 | None:intergenic | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | - | chr3.4:65669228-65669247 | MS.gene05068:CDS | 40.0% | |
| TCAAAGATCAAATCCCCTCA+TGG | - | chr3.4:65668594-65668613 | MS.gene05068:intron | 40.0% | |
| TCCATCTCCACATATCAAAC+CGG | + | chr3.4:65669374-65669393 | None:intergenic | 40.0% | |
| TCTGTGGAAAAAGGGTTTGA+AGG | - | chr3.4:65666629-65666648 | MS.gene05068:CDS | 40.0% | |
| TGATCGGTGGAATTCTTTCA+TGG | - | chr3.4:65668006-65668025 | MS.gene05068:CDS | 40.0% | |
| TGGCTATTCTACAACGCTTT+CGG | - | chr3.4:65669016-65669035 | MS.gene05068:intron | 40.0% | |
| TGGCTCACAAACATGGATTT+CGG | + | chr3.4:65668950-65668969 | None:intergenic | 40.0% | |
| TGTAATACCACTTTAGCTGG+TGG | + | chr3.4:65668682-65668701 | None:intergenic | 40.0% | |
| TTAGCTGGTGGAAAATGAAG+GGG | + | chr3.4:65668670-65668689 | None:intergenic | 40.0% | |
| TTCAGTGCTAGTGATGATTG+TGG | - | chr3.4:65667635-65667654 | MS.gene05068:intron | 40.0% | |
| TTTGCAAACTTCCCCACATT+TGG | - | chr3.4:65667659-65667678 | MS.gene05068:intron | 40.0% | |
| ! | AATGTTTCTGCTGGGTTGTT+AGG | - | chr3.4:65666779-65666798 | MS.gene05068:CDS | 40.0% |
| ! | ACAACCATAGGCATTGCAAA+AGG | + | chr3.4:65668738-65668757 | None:intergenic | 40.0% |
| ! | ATGTTTCTGCTGGGTTGTTA+GGG | - | chr3.4:65666780-65666799 | MS.gene05068:CDS | 40.0% |
| ! | ATTTTCCGTAAGTCGATGCA+AGG | + | chr3.4:65668778-65668797 | None:intergenic | 40.0% |
| ! | CACTAGCACTGAAAAACCAT+TGG | + | chr3.4:65667628-65667647 | None:intergenic | 40.0% |
| ! | CTTCGTTGAATGTTTCTGCT+GGG | - | chr3.4:65666771-65666790 | MS.gene05068:CDS | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | - | chr3.4:65667223-65667242 | MS.gene05068:CDS | 40.0% |
| ! | GGTGATGGTCTATACAACTT+TGG | - | chr3.4:65668431-65668450 | MS.gene05068:CDS | 40.0% |
| ! | GTTGATAAGATGAGCTGTTG+CGG | + | chr3.4:65667513-65667532 | None:intergenic | 40.0% |
| ! | TCATTTTCCACCAGCTAAAG+TGG | - | chr3.4:65668672-65668691 | MS.gene05068:intron | 40.0% |
| ! | TGTCGTCGAATGAAAGTGTA+GGG | + | chr3.4:65668553-65668572 | None:intergenic | 40.0% |
| ! | TTATATCGCCGTGTGTTTTC+TGG | - | chr3.4:65668996-65669015 | MS.gene05068:intron | 40.0% |
| ! | TTGTCGTCGAATGAAAGTGT+AGG | + | chr3.4:65668554-65668573 | None:intergenic | 40.0% |
| ! | TTTTCCGTAAGTCGATGCAA+GGG | + | chr3.4:65668777-65668796 | None:intergenic | 40.0% |
| ! | TTTTGCAATGCCTATGGTTG+TGG | - | chr3.4:65668737-65668756 | MS.gene05068:intron | 40.0% |
| ! | TTTTGTGGGGTTTCTTCCAA+TGG | - | chr3.4:65667609-65667628 | MS.gene05068:CDS | 40.0% |
| ! | TTTTTCTGCAACCTATGTGG+GGG | - | chr3.4:65667944-65667963 | MS.gene05068:CDS | 40.0% |
| !! | CCTCTCATTGGTGCTAAAAA+AGG | - | chr3.4:65668041-65668060 | MS.gene05068:CDS | 40.0% |
| !! | CTTGATTTGCTTGCTTGTGT+AGG | - | chr3.4:65667083-65667102 | MS.gene05068:CDS | 40.0% |
| !! | TGCTTTGTTTGAGATCAGCA+GGG | + | chr3.4:65668076-65668095 | None:intergenic | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAG+AGG | + | chr3.4:65668044-65668063 | None:intergenic | 40.0% |
| AAACTTCCCCACATTTGGTC+TGG | - | chr3.4:65667664-65667683 | MS.gene05068:intron | 45.0% | |
| AAGGAACATCTGTTCCTACG+TGG | - | chr3.4:65666648-65666667 | MS.gene05068:CDS | 45.0% | |
| AATGGTGTTCGCGACTATGT+CGG | - | chr3.4:65669187-65669206 | MS.gene05068:CDS | 45.0% | |
| ACAACTTGAGGAGATCTCTG+TGG | - | chr3.4:65666613-65666632 | MS.gene05068:CDS | 45.0% | |
| ACCAAGTTGCTTGAGAAAGC+TGG | - | chr3.4:65666824-65666843 | MS.gene05068:CDS | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | - | chr3.4:65668092-65668111 | MS.gene05068:CDS | 45.0% | |
| AGGGTTAAGGCTGATGCATT+TGG | - | chr3.4:65669334-65669353 | MS.gene05068:CDS | 45.0% | |
| ATAGCCATAGCCATAGGAAC+AGG | + | chr3.4:65669235-65669254 | None:intergenic | 45.0% | |
| ATAGGCTTCCAGACCAAATG+TGG | + | chr3.4:65667675-65667694 | None:intergenic | 45.0% | |
| ATCCGTTAGTCCACAACCAT+AGG | + | chr3.4:65668750-65668769 | None:intergenic | 45.0% | |
| ATGGCTATACTAGGTGTGGA+CGG | - | chr3.4:65669097-65669116 | MS.gene05068:intron | 45.0% | |
| CCAAGTTGCTTGAGAAAGCT+GGG | - | chr3.4:65666825-65666844 | MS.gene05068:CDS | 45.0% | |
| CCAGCAGAAACATTCAACGA+AGG | + | chr3.4:65666773-65666792 | None:intergenic | 45.0% | |
| GAGGAGATCTCTGTGGAAAA+AGG | - | chr3.4:65666620-65666639 | MS.gene05068:CDS | 45.0% | |
| GCAAGAGCAAGAAAAGAGCT+AGG | + | chr3.4:65669409-65669428 | None:intergenic | 45.0% | |
| GCAGAAACAGGTTACGGTTA+GGG | - | chr3.4:65666670-65666689 | MS.gene05068:CDS | 45.0% | |
| GCTAGTGGAATTGCATTCAG+CGG | - | chr3.4:65666908-65666927 | MS.gene05068:CDS | 45.0% | |
| GTCAAGAGCAGCAAATGCTA+AGG | - | chr3.4:65669462-65669481 | MS.gene05068:CDS | 45.0% | |
| GTTTGGCACCTTCTGATGTA+TGG | + | chr3.4:65667541-65667560 | None:intergenic | 45.0% | |
| TACAACGCTTTCGGTACTCT+TGG | - | chr3.4:65669025-65669044 | MS.gene05068:intron | 45.0% | |
| TACGTGGCAGAAACAGGTTA+CGG | - | chr3.4:65666664-65666683 | MS.gene05068:CDS | 45.0% | |
| TAGGCTTCCAGACCAAATGT+GGG | + | chr3.4:65667674-65667693 | None:intergenic | 45.0% | |
| TAGTACTGTACCTTTCGGAG+TGG | + | chr3.4:65667251-65667270 | None:intergenic | 45.0% | |
| ! | AATGAAAGTGTAGGGGAGAG+AGG | + | chr3.4:65668545-65668564 | None:intergenic | 45.0% |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | - | chr3.4:65666893-65666912 | MS.gene05068:CDS | 45.0% |
| ! | AGCTCTTTTCTTGCTCTTGC+TGG | - | chr3.4:65669409-65669428 | MS.gene05068:CDS | 45.0% |
| ! | ATGGTTGTGGACTAACGGAT+TGG | - | chr3.4:65668750-65668769 | MS.gene05068:intron | 45.0% |
| ! | CATCTTCGCTATTGGTGCTT+GGG | - | chr3.4:65668802-65668821 | MS.gene05068:CDS | 45.0% |
| ! | CCTTCGTTGAATGTTTCTGC+TGG | - | chr3.4:65666770-65666789 | MS.gene05068:CDS | 45.0% |
| ! | GATTTGCTTGCTTGTGTAGG+TGG | - | chr3.4:65667086-65667105 | MS.gene05068:CDS | 45.0% |
| ! | GGGTTTGGTAGCTACTTGTT+TGG | - | chr3.4:65667107-65667126 | MS.gene05068:CDS | 45.0% |
| ! | GTCGTCGAATGAAAGTGTAG+GGG | + | chr3.4:65668552-65668571 | None:intergenic | 45.0% |
| ! | TCCGGTTTGATATGTGGAGA+TGG | - | chr3.4:65669370-65669389 | MS.gene05068:CDS | 45.0% |
| ! | TGCCTATGGTTGTGGACTAA+CGG | - | chr3.4:65668745-65668764 | MS.gene05068:intron | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | - | chr3.4:65668018-65668037 | MS.gene05068:CDS | 45.0% |
| !! | CTAGCCTTTTGCAATGCCTA+TGG | - | chr3.4:65668731-65668750 | MS.gene05068:intron | 45.0% |
| !! | CTGCTTTGTTTGAGATCAGC+AGG | + | chr3.4:65668077-65668096 | None:intergenic | 45.0% |
| !! | GAGAGGAGCATTTGGATCAT+CGG | + | chr3.4:65668528-65668547 | None:intergenic | 45.0% |
| !! | GCAGAAGGTTGATAGGGTTA+AGG | - | chr3.4:65669321-65669340 | MS.gene05068:CDS | 45.0% |
| !! | GCCGGTGCCATGATTATTAA+TGG | - | chr3.4:65669169-65669188 | MS.gene05068:CDS | 45.0% |
| !! | TTTCGATAAACGAGGGCGTT+AGG | + | chr3.4:65669076-65669095 | None:intergenic | 45.0% |
| !! | TTCATTAATTAATAAAATAA+AGG | + | chr3.4:65667718-65667737 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | - | chr3.4:65668147-65668166 | MS.gene05068:intron | 5.0% |
| AGGCTTCCAGACCAAATGTG+GGG | + | chr3.4:65667673-65667692 | None:intergenic | 50.0% | |
| AGTTGCTTGAGAAAGCTGGG+TGG | - | chr3.4:65666828-65666847 | MS.gene05068:CDS | 50.0% | |
| CCAAGCACCAATAGCGAAGA+TGG | + | chr3.4:65668804-65668823 | None:intergenic | 50.0% | |
| CCCAGCTTTCTCAAGCAACT+TGG | + | chr3.4:65666828-65666847 | None:intergenic | 50.0% | |
| CCTGCAATTGCGAACCATGA+GGG | + | chr3.4:65668611-65668630 | None:intergenic | 50.0% | |
| CGCCCTCGTTTATCGAAACA+TGG | - | chr3.4:65669078-65669097 | MS.gene05068:intron | 50.0% | |
| CTGCAATTGCGAACCATGAG+GGG | + | chr3.4:65668610-65668629 | None:intergenic | 50.0% | |
| CTGGTGGAAAATGAAGGGGA+TGG | + | chr3.4:65668666-65668685 | None:intergenic | 50.0% | |
| GACACCACATGCTGCTAAAC+CGG | + | chr3.4:65668855-65668874 | None:intergenic | 50.0% | |
| GCATTGCAAAAGGCTAGTGC+AGG | + | chr3.4:65668728-65668747 | None:intergenic | 50.0% | |
| GGCAGAAACAGGTTACGGTT+AGG | - | chr3.4:65666669-65666688 | MS.gene05068:CDS | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | + | chr3.4:65667958-65667977 | None:intergenic | 50.0% | |
| TGTTCCTACGTGGCAGAAAC+AGG | - | chr3.4:65666658-65666677 | MS.gene05068:CDS | 50.0% | |
| TTCAGTGGTTCCACTCCGAA+AGG | - | chr3.4:65667238-65667257 | MS.gene05068:CDS | 50.0% | |
| TTCGGTACTCTTGGTCAACC+TGG | - | chr3.4:65669034-65669053 | MS.gene05068:intron | 50.0% | |
| TTTGGATCAGCTGTTGCGTC+CGG | - | chr3.4:65669352-65669371 | MS.gene05068:CDS | 50.0% | |
| ! | CCATCTTCGCTATTGGTGCT+TGG | - | chr3.4:65668801-65668820 | MS.gene05068:CDS | 50.0% |
| ! | CTTGCTTGTGTAGGTGGGTT+TGG | - | chr3.4:65667092-65667111 | MS.gene05068:CDS | 50.0% |
| ! | GTTGCGTCCGGTTTGATATG+TGG | - | chr3.4:65669364-65669383 | MS.gene05068:CDS | 50.0% |
| !! | GTAACCTGTTTCTGCCACGT+AGG | + | chr3.4:65666665-65666684 | None:intergenic | 50.0% |
| !! | TGGTCCCTTGCATCGACTTA+CGG | - | chr3.4:65668770-65668789 | MS.gene05068:intron | 50.0% |
| CACATGCTGCTAAACCGGCT+AGG | + | chr3.4:65668850-65668869 | None:intergenic | 55.0% | |
| CCCTATGACGTCGAAAGCCA+CGG | - | chr3.4:65666557-65666576 | MS.gene05068:CDS | 55.0% | |
| CCCTCATGGTTCGCAATTGC+AGG | - | chr3.4:65668608-65668627 | MS.gene05068:intron | 55.0% | |
| CCGTGGCTTTCGACGTCATA+GGG | + | chr3.4:65666560-65666579 | None:intergenic | 55.0% | |
| CTGCAACCTATGTGGGGGTT+GGG | - | chr3.4:65667949-65667968 | MS.gene05068:CDS | 55.0% | |
| GCCTGCAATTGCGAACCATG+AGG | + | chr3.4:65668612-65668631 | None:intergenic | 55.0% | |
| TCTGCAACCTATGTGGGGGT+TGG | - | chr3.4:65667948-65667967 | MS.gene05068:CDS | 55.0% | |
| TGAGCTGTTGCGGTACCACT+TGG | + | chr3.4:65667503-65667522 | None:intergenic | 55.0% | |
| ! | CTAGCCGGTTTAGCAGCATG+TGG | - | chr3.4:65668848-65668867 | MS.gene05068:CDS | 55.0% |
| ! | CTTTGCGGCGTGTTTTTCGC+CGG | - | chr3.4:65669151-65669170 | MS.gene05068:CDS | 55.0% |
| ! | GGTGTCATGTGGCCTCTCAT+TGG | - | chr3.4:65668029-65668048 | MS.gene05068:CDS | 55.0% |
| ! | TTCGCTATTGGTGCTTGGGC+AGG | - | chr3.4:65668806-65668825 | MS.gene05068:CDS | 55.0% |
| !! | AAACGAGGGCGTTAGGTGCA+GGG | + | chr3.4:65669069-65669088 | None:intergenic | 55.0% |
| !! | GTAGGGGAGAGAGGAGCATT+TGG | + | chr3.4:65668536-65668555 | None:intergenic | 55.0% |
| !! | TAAACGAGGGCGTTAGGTGC+AGG | + | chr3.4:65669070-65669089 | None:intergenic | 55.0% |
| GCCGTGGCTTTCGACGTCAT+AGG | + | chr3.4:65666561-65666580 | None:intergenic | 60.0% | |
| GCTTGGGCAGGTGCGTCTAA+CGG | - | chr3.4:65668818-65668837 | MS.gene05068:CDS | 60.0% | |
| GGTGCAGGGTATGGTGAACC+AGG | + | chr3.4:65669055-65669074 | None:intergenic | 60.0% | |
| TCTAACGGCGGTGTCCTAGC+CGG | - | chr3.4:65668833-65668852 | MS.gene05068:CDS | 60.0% | |
| TGACGTCGAAAGCCACGGCA+TGG | - | chr3.4:65666562-65666581 | MS.gene05068:CDS | 60.0% | |
| ! | AGGGCGTTAGGTGCAGGGTA+TGG | + | chr3.4:65669064-65669083 | None:intergenic | 60.0% |
| CGAAAGCCACGGCATGGCTG+CGG | - | chr3.4:65666568-65666587 | MS.gene05068:CDS | 65.0% | |
| TGGGCAGGTGCGTCTAACGG+CGG | - | chr3.4:65668821-65668840 | MS.gene05068:CDS | 65.0% | |
| CGGCATGGCTGCGGTTGCAC+CGG | - | chr3.4:65666577-65666596 | MS.gene05068:CDS | 70.0% | |
| GTGCAACCGCAGCCATGCCG+TGG | + | chr3.4:65666577-65666596 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 65666545 | 65669507 | 65666545 | ID=MS.gene05068 |
| chr3.4 | mRNA | 65666545 | 65669507 | 65666545 | ID=MS.gene05068.t1;Parent=MS.gene05068 |
| chr3.4 | exon | 65669123 | 65669507 | 65669123 | ID=MS.gene05068.t1.exon1;Parent=MS.gene05068.t1 |
| chr3.4 | CDS | 65669123 | 65669507 | 65669123 | ID=cds.MS.gene05068.t1;Parent=MS.gene05068.t1 |
| chr3.4 | exon | 65668793 | 65668947 | 65668793 | ID=MS.gene05068.t1.exon2;Parent=MS.gene05068.t1 |
| chr3.4 | CDS | 65668793 | 65668947 | 65668793 | ID=cds.MS.gene05068.t1;Parent=MS.gene05068.t1 |
| chr3.4 | exon | 65668501 | 65668582 | 65668501 | ID=MS.gene05068.t1.exon3;Parent=MS.gene05068.t1 |
| chr3.4 | CDS | 65668501 | 65668582 | 65668501 | ID=cds.MS.gene05068.t1;Parent=MS.gene05068.t1 |
| chr3.4 | exon | 65668350 | 65668470 | 65668350 | ID=MS.gene05068.t1.exon4;Parent=MS.gene05068.t1 |
| chr3.4 | CDS | 65668350 | 65668470 | 65668350 | ID=cds.MS.gene05068.t1;Parent=MS.gene05068.t1 |
| chr3.4 | exon | 65667931 | 65668120 | 65667931 | ID=MS.gene05068.t1.exon5;Parent=MS.gene05068.t1 |
| chr3.4 | CDS | 65667931 | 65668120 | 65667931 | ID=cds.MS.gene05068.t1;Parent=MS.gene05068.t1 |
| chr3.4 | exon | 65666545 | 65667648 | 65666545 | ID=MS.gene05068.t1.exon6;Parent=MS.gene05068.t1 |
| chr3.4 | CDS | 65666545 | 65667648 | 65666545 | ID=cds.MS.gene05068.t1;Parent=MS.gene05068.t1 |
| Gene Sequence |
| Protein sequence |
