Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05072.t1 | XP_013460546.1 | 90.9 | 695 | 53 | 1 | 1 | 685 | 1 | 695 | 0.00E+00 | 1275.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05072.t1 | Q9SHY2 | 73.7 | 673 | 164 | 3 | 26 | 686 | 16 | 687 | 7.2e-297 | 1020.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05072.t1 | A0A072V8Q6 | 90.9 | 695 | 53 | 1 | 1 | 685 | 1 | 695 | 0.0e+00 | 1275.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05216 | MS.gene05072 | PPI |
| MS.gene05072 | MS.gene57831 | PPI |
| MS.gene45566 | MS.gene05072 | PPI |
| MS.gene05072 | MS.gene37726 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05072.t1 | MTR_3g063490 | 90.935 | 695 | 53 | 1 | 1 | 685 | 1 | 695 | 0.0 | 1272 |
| MS.gene05072.t1 | MTR_5g091600 | 86.906 | 695 | 67 | 3 | 1 | 685 | 1 | 681 | 0.0 | 1197 |
| MS.gene05072.t1 | MTR_3g063520 | 87.608 | 694 | 70 | 2 | 1 | 684 | 1 | 688 | 0.0 | 1158 |
| MS.gene05072.t1 | MTR_6g077870 | 70.615 | 667 | 180 | 4 | 30 | 684 | 48 | 710 | 0.0 | 971 |
| MS.gene05072.t1 | MTR_6g077870 | 69.078 | 553 | 155 | 4 | 144 | 684 | 1 | 549 | 0.0 | 791 |
| MS.gene05072.t1 | MTR_7g028250 | 57.878 | 641 | 254 | 6 | 45 | 671 | 35 | 673 | 0.0 | 752 |
| MS.gene05072.t1 | MTR_3g092090 | 54.955 | 666 | 273 | 8 | 26 | 671 | 5 | 663 | 0.0 | 739 |
| MS.gene05072.t1 | MTR_3g092090 | 54.656 | 655 | 270 | 8 | 26 | 660 | 5 | 652 | 0.0 | 721 |
| MS.gene05072.t1 | MTR_1g007580 | 51.187 | 674 | 300 | 8 | 25 | 674 | 4 | 672 | 0.0 | 700 |
| MS.gene05072.t1 | MTR_0312s0020 | 50.445 | 674 | 305 | 8 | 25 | 674 | 4 | 672 | 0.0 | 693 |
| MS.gene05072.t1 | MTR_1g007540 | 50.445 | 674 | 305 | 8 | 25 | 674 | 4 | 672 | 0.0 | 693 |
| MS.gene05072.t1 | MTR_1g077840 | 51.254 | 638 | 294 | 5 | 48 | 673 | 47 | 679 | 0.0 | 683 |
| MS.gene05072.t1 | MTR_5g091615 | 87.421 | 159 | 20 | 0 | 523 | 681 | 59 | 217 | 2.23e-86 | 273 |
| MS.gene05072.t1 | MTR_1626s0010 | 51.064 | 235 | 112 | 1 | 216 | 450 | 4 | 235 | 3.39e-80 | 255 |
| MS.gene05072.t1 | MTR_0312s0050 | 50.833 | 120 | 48 | 3 | 25 | 133 | 4 | 123 | 1.92e-31 | 119 |
| MS.gene05072.t1 | MTR_2g083230 | 84.783 | 46 | 7 | 0 | 135 | 180 | 34 | 79 | 2.52e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05072.t1 | AT1G65730 | 73.700 | 673 | 164 | 3 | 26 | 686 | 16 | 687 | 0.0 | 1035 |
| MS.gene05072.t1 | AT3G17650 | 70.210 | 668 | 180 | 4 | 35 | 685 | 46 | 711 | 0.0 | 935 |
| MS.gene05072.t1 | AT3G17650 | 70.210 | 668 | 180 | 4 | 35 | 685 | 46 | 711 | 0.0 | 935 |
| MS.gene05072.t1 | AT1G48370 | 69.656 | 669 | 183 | 4 | 35 | 685 | 55 | 721 | 0.0 | 922 |
| MS.gene05072.t1 | AT3G27020 | 58.218 | 651 | 237 | 8 | 45 | 671 | 31 | 670 | 0.0 | 755 |
| MS.gene05072.t1 | AT1G48370 | 67.857 | 560 | 160 | 4 | 144 | 685 | 1 | 558 | 0.0 | 746 |
| MS.gene05072.t1 | AT5G53550 | 55.471 | 658 | 271 | 6 | 29 | 672 | 20 | 669 | 0.0 | 734 |
| MS.gene05072.t1 | AT5G53550 | 55.471 | 658 | 271 | 6 | 29 | 672 | 20 | 669 | 0.0 | 734 |
| MS.gene05072.t1 | AT5G53550 | 55.471 | 658 | 271 | 6 | 29 | 672 | 20 | 669 | 0.0 | 734 |
| MS.gene05072.t1 | AT5G53550 | 55.471 | 658 | 271 | 6 | 29 | 672 | 20 | 669 | 0.0 | 734 |
| MS.gene05072.t1 | AT5G53550 | 55.471 | 658 | 271 | 6 | 29 | 672 | 20 | 669 | 0.0 | 734 |
| MS.gene05072.t1 | AT5G24380 | 53.343 | 658 | 289 | 6 | 28 | 671 | 7 | 660 | 0.0 | 720 |
| MS.gene05072.t1 | AT5G41000 | 54.489 | 646 | 277 | 6 | 41 | 671 | 24 | 667 | 0.0 | 711 |
| MS.gene05072.t1 | AT4G24120 | 51.965 | 687 | 301 | 7 | 1 | 673 | 1 | 672 | 0.0 | 711 |
| MS.gene05072.t1 | AT5G41000 | 53.178 | 645 | 262 | 8 | 41 | 671 | 24 | 642 | 0.0 | 675 |
| MS.gene05072.t1 | AT5G53550 | 57.198 | 514 | 203 | 4 | 169 | 672 | 1 | 507 | 0.0 | 597 |
| MS.gene05072.t1 | AT5G41000 | 53.347 | 493 | 216 | 5 | 191 | 671 | 1 | 491 | 0.0 | 540 |
| MS.gene05072.t1 | AT5G45450 | 65.297 | 219 | 70 | 1 | 467 | 685 | 1 | 213 | 3.71e-96 | 296 |
Find 143 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTTGTTGCTAGCTTTCT+TGG | 0.091899 | 3.4:-65615309 | MS.gene05072:CDS |
| GCCAATGATGTTAAGATTCT+TGG | 0.168633 | 3.4:-65615354 | MS.gene05072:CDS |
| GAGGAGTATTCTATTGAAAA+AGG | 0.187156 | 3.4:-65616975 | MS.gene05072:CDS |
| AATGTTTCTGCTGGGTTGTT+AGG | 0.220508 | 3.4:-65616816 | MS.gene05072:CDS |
| TACAACTTTGTGAAAGTTCT+TGG | 0.229178 | 3.4:-65614007 | MS.gene05072:CDS |
| GAAGCTTGATATTGTTTATT+TGG | 0.238786 | 3.4:-65613154 | MS.gene05072:CDS |
| GTTCTTGGCACAACTCTTAT+AGG | 0.241739 | 3.4:-65613992 | MS.gene05072:CDS |
| GTGTCATGTGGCCTCTCATT+TGG | 0.267970 | 3.4:-65614419 | MS.gene05072:CDS |
| ATGTTTGTGAGCCAAGTTAT+TGG | 0.272519 | 3.4:-65613497 | MS.gene05072:CDS |
| TTTGGATCAGCTGTTGCTTC+TGG | 0.276008 | 3.4:-65613101 | MS.gene05072:CDS |
| GTATTCTCTTGTCTGGTAAA+AGG | 0.281889 | 3.4:+65616735 | None:intergenic |
| TGATATGTGGAGATGGAATT+TGG | 0.283833 | 3.4:-65613076 | MS.gene05072:CDS |
| AACGAAATATTGATTATATA+TGG | 0.288725 | 3.4:+65614468 | None:intergenic |
| CCTTCTTTGAATGTTTCTGC+TGG | 0.306391 | 3.4:-65616825 | MS.gene05072:CDS |
| ACGAACAAAATTGATAATTA+TGG | 0.309451 | 3.4:+65613277 | None:intergenic |
| TGTCATGTGGCCTCTCATTT+GGG | 0.321246 | 3.4:-65614418 | MS.gene05072:CDS |
| TCAAAGACCAAATCCCCTTC+TGG | 0.339689 | 3.4:-65613859 | MS.gene05072:CDS |
| ATCAATATTTCGTTGTTGAT+TGG | 0.340706 | 3.4:-65614459 | MS.gene05072:CDS |
| TCATTGGCAGTGTCAAATTC+TGG | 0.345905 | 3.4:+65615369 | None:intergenic |
| GGAAGAAACAAGTTACTGTT+AGG | 0.349963 | 3.4:-65616926 | MS.gene05072:CDS |
| TTTGCAAACTTCCCCACATT+TGG | 0.363476 | 3.4:-65614755 | MS.gene05072:CDS |
| AGGGCTAAGGCTGATGCATT+TGG | 0.367842 | 3.4:-65613119 | MS.gene05072:CDS |
| TTATTTGGCAGAAGGTTGAT+AGG | 0.371137 | 3.4:-65613139 | MS.gene05072:CDS |
| TGGCTATTCTACCATGCTTT+CGG | 0.374578 | 3.4:-65613437 | MS.gene05072:CDS |
| CAAGTTTATTCCTGTTCCTA+TGG | 0.375181 | 3.4:-65613231 | MS.gene05072:CDS |
| TAGCAAACCAGAAGGGGATT+TGG | 0.375406 | 3.4:+65613852 | None:intergenic |
| GCAAGAGCAAGAAAAGAGTT+TGG | 0.376106 | 3.4:+65613047 | None:intergenic |
| GTAGGTGGGAGAGGAGCATT+TGG | 0.378591 | 3.4:+65613920 | None:intergenic |
| ATGAAACTGAATCTCACAAC+TGG | 0.383468 | 3.4:-65616855 | MS.gene05072:CDS |
| CCCCATCGACGTGCGGTTCA+TGG | 0.388962 | 3.4:-65617056 | MS.gene05072:CDS |
| AAGTTGCTTCCAATGTAAAA+TGG | 0.389817 | 3.4:+65613197 | None:intergenic |
| TTTCGAAACATGGCAATACT+AGG | 0.390443 | 3.4:-65613365 | MS.gene05072:CDS |
| TGGCTCACAAACATGGATTT+CGG | 0.390640 | 3.4:+65613506 | None:intergenic |
| CCATCTTCACCATCGGTGCT+TGG | 0.397404 | 3.4:-65613652 | MS.gene05072:CDS |
| TGATTGGTGGAATTCTTTCA+TGG | 0.399224 | 3.4:-65614443 | MS.gene05072:CDS |
| GTTTGGCACCTTCAGATGTA+TGG | 0.407013 | 3.4:+65614876 | None:intergenic |
| GATGTTAAGATTCTTGGTTT+AGG | 0.410304 | 3.4:-65615348 | MS.gene05072:CDS |
| ACCAAGAATCTTAACATCAT+TGG | 0.413510 | 3.4:+65615353 | None:intergenic |
| GCCAGCTTACATGGTCTTCA+AGG | 0.419695 | 3.4:-65614357 | MS.gene05072:CDS |
| CTTATGCAAGACTTCAAAAC+AGG | 0.423970 | 3.4:-65613548 | MS.gene05072:CDS |
| TATTCCTGTTCCTATGGCTA+TGG | 0.427311 | 3.4:-65613225 | MS.gene05072:CDS |
| CTTCTTTGAATGTTTCTGCT+GGG | 0.428844 | 3.4:-65616824 | MS.gene05072:CDS |
| GACAAGAATTTCATACAAAT+AGG | 0.429713 | 3.4:+65613011 | None:intergenic |
| AATAACAGTATTCTCTTGTC+TGG | 0.429956 | 3.4:+65616728 | None:intergenic |
| GATTGGTGGAATTCTTTCAT+GGG | 0.431679 | 3.4:-65614442 | MS.gene05072:CDS |
| TACCATGCTTTCGGTACTCT+TGG | 0.438122 | 3.4:-65613428 | MS.gene05072:CDS |
| CGATAGCAGTTCCAATAACT+TGG | 0.440795 | 3.4:+65613486 | None:intergenic |
| TTAAGATTCTTGGTTTAGGA+TGG | 0.442240 | 3.4:-65615344 | MS.gene05072:CDS |
| GTTGCTTCTGGTTTGATATG+TGG | 0.442292 | 3.4:-65613089 | MS.gene05072:CDS |
| AATATTTCGTTGTTGATTGG+TGG | 0.447427 | 3.4:-65614456 | MS.gene05072:CDS |
| TTCGGTACTCTTGGTCAACC+TGG | 0.448380 | 3.4:-65613419 | MS.gene05072:CDS |
| CATCTTCACCATCGGTGCTT+GGG | 0.448691 | 3.4:-65613651 | MS.gene05072:CDS |
| ATGTTTCTGCTGGGTTGTTA+GGG | 0.449011 | 3.4:-65616815 | MS.gene05072:CDS |
| TTCACTGCTGGTGATGCTTG+TGG | 0.449951 | 3.4:-65614779 | MS.gene05072:CDS |
| TTCACCATCGGTGCTTGGGC+AGG | 0.450558 | 3.4:-65613647 | MS.gene05072:CDS |
| CTCGGAGAAGCCAGCTTACA+TGG | 0.450903 | 3.4:-65614366 | MS.gene05072:CDS |
| CCCTTCTGGTTTGCTATCGC+AGG | 0.458344 | 3.4:-65613845 | MS.gene05072:CDS |
| AGTCACGTACTTGTGTTGAT+AGG | 0.469351 | 3.4:+65614724 | None:intergenic |
| AGAAGGGGATTTGGTCTTTG+AGG | 0.473740 | 3.4:+65613861 | None:intergenic |
| ATGGTTGTGGATTAACAGAT+TGG | 0.477950 | 3.4:-65613703 | MS.gene05072:CDS |
| ACTTGCGTTGTTGCTTCTAG+TGG | 0.479128 | 3.4:-65616702 | MS.gene05072:CDS |
| TGGTCCCTTGCATCGACCTA+TGG | 0.480839 | 3.4:-65613683 | MS.gene05072:CDS |
| GCCAACGGCGGTGTCCTAGC+TGG | 0.484265 | 3.4:-65613620 | MS.gene05072:CDS |
| AAAACACAATGCAAAGTTTG+AGG | 0.485365 | 3.4:+65613309 | None:intergenic |
| GCCATGAACCGCACGTCGAT+GGG | 0.489396 | 3.4:+65617055 | None:intergenic |
| CGCCATGAACCGCACGTCGA+TGG | 0.489811 | 3.4:+65617054 | None:intergenic |
| CAAGTTATTGGAACTGCTAT+CGG | 0.490061 | 3.4:-65613485 | MS.gene05072:CDS |
| AAACTTCCCCACATTTGGTC+TGG | 0.492239 | 3.4:-65614750 | MS.gene05072:CDS |
| TGACGTGATACCACTTTAGC+TGG | 0.494074 | 3.4:+65613771 | None:intergenic |
| TTCTTTCATGGGGTGTCATG+TGG | 0.500744 | 3.4:-65614431 | MS.gene05072:CDS |
| ATAGCCATAGCCATAGGAAC+AGG | 0.504745 | 3.4:+65613221 | None:intergenic |
| AAAATGAGTGCATAAGGTGC+AGG | 0.507102 | 3.4:+65613386 | None:intergenic |
| GATATTGTTTATTTGGCAGA+AGG | 0.507191 | 3.4:-65613147 | MS.gene05072:CDS |
| ACTTTAGCTGGTGGAAAATG+TGG | 0.515525 | 3.4:+65613783 | None:intergenic |
| CAAAACAGGTTACATGACAT+TGG | 0.515553 | 3.4:-65613534 | MS.gene05072:CDS |
| AATGAAAGAGTAGGTGGGAG+AGG | 0.517823 | 3.4:+65613911 | None:intergenic |
| GATTGGTTCTCTGCGGAGCT+CGG | 0.520054 | 3.4:-65614384 | MS.gene05072:CDS |
| CCAAGCACCGATGGTGAAGA+TGG | 0.522531 | 3.4:+65613652 | None:intergenic |
| TATTTGGCAGAAGGTTGATA+GGG | 0.522764 | 3.4:-65613138 | MS.gene05072:CDS |
| CATAGGAACAGGAATAAACT+TGG | 0.525688 | 3.4:+65613232 | None:intergenic |
| AATAACTTGGCTCACAAACA+TGG | 0.530485 | 3.4:+65613499 | None:intergenic |
| ACAACCATACGCATTGCAAA+AGG | 0.531691 | 3.4:+65613718 | None:intergenic |
| GGTGTCGAACGATGATCAAC+CGG | 0.531947 | 3.4:-65616997 | MS.gene05072:CDS |
| TTTGCTATTGATATGTGTGT+TGG | 0.532358 | 3.4:-65613176 | MS.gene05072:CDS |
| ATAGGCATAGCAATGATCCT+TGG | 0.533743 | 3.4:-65614040 | MS.gene05072:CDS |
| TTCAGTGGTTCCACTCCGAA+AGG | 0.534003 | 3.4:-65615280 | MS.gene05072:intron |
| ACCTTGAAGACCATGTAAGC+TGG | 0.534444 | 3.4:+65614356 | None:intergenic |
| TTTGAAGTCTTGCATAAGAT+CGG | 0.535495 | 3.4:+65613553 | None:intergenic |
| TTATAGGTTTGTATAAGCAA+TGG | 0.546529 | 3.4:-65613976 | MS.gene05072:CDS |
| TCATCAAATGAAAGAGTAGG+TGG | 0.551304 | 3.4:+65613905 | None:intergenic |
| GCTTGGGCAGGTGCAGCCAA+CGG | 0.551348 | 3.4:-65613635 | MS.gene05072:CDS |
| GCAGAAGGTTGATAGGGCTA+AGG | 0.554139 | 3.4:-65613132 | MS.gene05072:CDS |
| CTTTAGCTGGTGGAAAATGT+GGG | 0.554313 | 3.4:+65613784 | None:intergenic |
| TTGGTCTTTGAGGAACATCT+CGG | 0.554670 | 3.4:+65613871 | None:intergenic |
| GAAGAAACAAGTTACTGTTA+GGG | 0.555182 | 3.4:-65616925 | MS.gene05072:CDS |
| TGCACCTGCCCAAGCACCGA+TGG | 0.555795 | 3.4:+65613643 | None:intergenic |
| GCATTGCAAAAGGCTAGTGC+AGG | 0.556648 | 3.4:+65613728 | None:intergenic |
| AACAGTTTCCATACATCTGA+AGG | 0.562004 | 3.4:-65614884 | MS.gene05072:intron |
| CCAGCAGAAACATTCAAAGA+AGG | 0.564125 | 3.4:+65616825 | None:intergenic |
| TGAGCTGTTGCAGTACCACT+TGG | 0.565478 | 3.4:+65614914 | None:intergenic |
| ATAGGCTTCCAGACCAAATG+TGG | 0.571043 | 3.4:+65614742 | None:intergenic |
| TGGGCAGGTGCAGCCAACGG+CGG | 0.578881 | 3.4:-65613632 | MS.gene05072:CDS |
| GACCAAGAGTACCGAAAGCA+TGG | 0.580149 | 3.4:+65613426 | None:intergenic |
| GATATTGAAAGCCACGACAC+TGG | 0.585847 | 3.4:-65617032 | MS.gene05072:CDS |
| TCTGGTTTGATATGTGGAGA+TGG | 0.585954 | 3.4:-65613083 | MS.gene05072:CDS |
| TTCTTGCTCTTGCTGGAGTG+CGG | 0.594300 | 3.4:-65613037 | MS.gene05072:CDS |
| AATGGTATAGCCATAGCCAT+AGG | 0.595250 | 3.4:+65613215 | None:intergenic |
| AAACATGGCAATACTAGGTG+TGG | 0.604006 | 3.4:-65613360 | MS.gene05072:CDS |
| CGACACTGGTGCAGTTACAC+CGG | 0.604291 | 3.4:-65617018 | MS.gene05072:CDS |
| GGTGCAGGGTATGCTGAACC+AGG | 0.606714 | 3.4:+65613401 | None:intergenic |
| AAATTAGCCATCTTCACCAT+CGG | 0.608039 | 3.4:-65613659 | MS.gene05072:CDS |
| CTGCGATAGCAAACCAGAAG+GGG | 0.610738 | 3.4:+65613846 | None:intergenic |
| ATTGGTGGAATTCTTTCATG+GGG | 0.611593 | 3.4:-65614441 | MS.gene05072:CDS |
| AAGAATTTCATACAAATAGG+TGG | 0.613359 | 3.4:+65613014 | None:intergenic |
| GTGTAACTGCACCAGTGTCG+TGG | 0.617352 | 3.4:+65617021 | None:intergenic |
| ACCAGCTAGGACACCGCCGT+TGG | 0.617802 | 3.4:+65613619 | None:intergenic |
| TCTAGTGGAATTGCATTCAG+TGG | 0.620504 | 3.4:-65616687 | MS.gene05072:intron |
| ATAGCAATGATCCTTGGTGA+TGG | 0.624209 | 3.4:-65614034 | MS.gene05072:CDS |
| CGTGATACCACTTTAGCTGG+TGG | 0.624435 | 3.4:+65613774 | None:intergenic |
| CACATGCTGCTAAACCAGCT+AGG | 0.625534 | 3.4:+65613606 | None:intergenic |
| GCCTGCGATAGCAAACCAGA+AGG | 0.626031 | 3.4:+65613844 | None:intergenic |
| TTGTCATCAAATGAAAGAGT+AGG | 0.626096 | 3.4:+65613902 | None:intergenic |
| AAATGAGTGCATAAGGTGCA+GGG | 0.626387 | 3.4:+65613387 | None:intergenic |
| CCTGCGATAGCAAACCAGAA+GGG | 0.629325 | 3.4:+65613845 | None:intergenic |
| TTCAGAACCCCATCGACGTG+CGG | 0.637003 | 3.4:-65617063 | MS.gene05072:CDS |
| TTTAGCTGGTGGAAAATGTG+GGG | 0.643964 | 3.4:+65613785 | None:intergenic |
| ATGGCAATACTAGGTGTGGA+CGG | 0.644933 | 3.4:-65613356 | MS.gene05072:CDS |
| CATCAAATGAAAGAGTAGGT+GGG | 0.646442 | 3.4:+65613906 | None:intergenic |
| AAGGAAAACTTGTTCCTACG+TGG | 0.648421 | 3.4:-65616947 | MS.gene05072:CDS |
| TAGGCTTCCAGACCAAATGT+GGG | 0.650528 | 3.4:+65614743 | None:intergenic |
| CTAGCTGGTTTAGCAGCATG+TGG | 0.651793 | 3.4:-65613605 | MS.gene05072:CDS |
| GGTTGATCATCGTTCGACAC+CGG | 0.653415 | 3.4:+65616999 | None:intergenic |
| AGTTAGTGTACCTTTCGGAG+TGG | 0.661315 | 3.4:+65615270 | None:intergenic |
| CCATGAACCGCACGTCGATG+GGG | 0.662931 | 3.4:+65617056 | None:intergenic |
| TGAAACTGAATCTCACAACT+GGG | 0.663215 | 3.4:-65616854 | MS.gene05072:CDS |
| TAGAATAGCCAGAAAACACA+TGG | 0.672547 | 3.4:+65613449 | None:intergenic |
| TTAGCTGGTGGAAAATGTGG+GGG | 0.686845 | 3.4:+65613786 | None:intergenic |
| GTCGAACGATGATCAACCGG+AGG | 0.690271 | 3.4:-65616994 | MS.gene05072:CDS |
| TTCAGATTGACATATCCAAG+TGG | 0.693932 | 3.4:-65614929 | MS.gene05072:CDS |
| AGGCTTCCAGACCAAATGTG+GGG | 0.704515 | 3.4:+65614744 | None:intergenic |
| AAAAGGAGATTGGTTCTCTG+CGG | 0.708367 | 3.4:-65614391 | MS.gene05072:CDS |
| GTAACTTGTTTCTTCCACGT+AGG | 0.713694 | 3.4:+65616933 | None:intergenic |
| AGTTGTATAGACCATCACCA+AGG | 0.762040 | 3.4:+65614023 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATTTTATTTTATT+AGG | - | chr3.4:65613642-65613661 | MS.gene05072:CDS | 0.0% |
| !! | CAATTCAAATAAATAAAAAA+TGG | + | chr3.4:65615733-65615752 | None:intergenic | 10.0% |
| !! | CTCATTAATTAATAAAATAA+AGG | + | chr3.4:65615340-65615359 | None:intergenic | 10.0% |
| !! | CTTTAACAAAAAATTAAAAA+AGG | + | chr3.4:65613412-65613431 | None:intergenic | 10.0% |
| !! | GATTTAAAAAGAATAAAATT+AGG | + | chr3.4:65615966-65615985 | None:intergenic | 10.0% |
| !! | TAAATGTTAAATAAAAGAAA+AGG | + | chr3.4:65615479-65615498 | None:intergenic | 10.0% |
| !! | TAATTAGATTAAATCAAATT+AGG | + | chr3.4:65613387-65613406 | None:intergenic | 10.0% |
| !! | TCATTTATATTACAATATAA+AGG | - | chr3.4:65613713-65613732 | MS.gene05072:CDS | 10.0% |
| !! | TTAAATTAAAACTAAATGTT+TGG | + | chr3.4:65615056-65615075 | None:intergenic | 10.0% |
| !! | TTAACAAAAAATTAAAAAAG+GGG | + | chr3.4:65613410-65613429 | None:intergenic | 10.0% |
| !!! | TTTTTATTTATTTGAATTGT+TGG | - | chr3.4:65615734-65615753 | MS.gene05072:intron | 10.0% |
| !! | AATCAATACAATGTATTAAT+AGG | - | chr3.4:65614802-65614821 | MS.gene05072:CDS | 15.0% |
| !! | AGCTTATAAATAATACATAA+AGG | + | chr3.4:65613967-65613986 | None:intergenic | 15.0% |
| !! | TTGTAATATAAATGAATTGA+TGG | + | chr3.4:65613708-65613727 | None:intergenic | 15.0% |
| !!! | AACGAAATATTGATTATATA+TGG | + | chr3.4:65615571-65615590 | None:intergenic | 15.0% |
| !!! | AGTATATTTTGAAATTGATA+TGG | - | chr3.4:65615795-65615814 | MS.gene05072:intron | 15.0% |
| !!! | TTTTATTCTTTTTAAATCAC+AGG | - | chr3.4:65615968-65615987 | MS.gene05072:intron | 15.0% |
| !! | AAGAATTAGCAATTTAAACA+CGG | - | chr3.4:65614263-65614282 | MS.gene05072:intron | 20.0% |
| !! | ATTAATGAGAGAATTCAAAA+AGG | - | chr3.4:65615351-65615370 | MS.gene05072:CDS | 20.0% |
| !! | CAACTTAAAATACAGTTAAT+TGG | - | chr3.4:65615844-65615863 | MS.gene05072:intron | 20.0% |
| !! | GAAAAATAGTAGTTTCTTAT+TGG | - | chr3.4:65615817-65615836 | MS.gene05072:intron | 20.0% |
| !! | TATTATTTAATGTACGTAAC+AGG | - | chr3.4:65615497-65615516 | MS.gene05072:intron | 20.0% |
| !! | TTAATGAGAGAATTCAAAAA+GGG | - | chr3.4:65615352-65615371 | MS.gene05072:CDS | 20.0% |
| !! | TTCTATTATGTTCTCAATTA+TGG | - | chr3.4:65615380-65615399 | MS.gene05072:CDS | 20.0% |
| !!! | ACGAACAAAATTGATAATTA+TGG | + | chr3.4:65616762-65616781 | None:intergenic | 20.0% |
| !!! | AGTTAATTTTGAAGTTTGAT+TGG | - | chr3.4:65613739-65613758 | MS.gene05072:CDS | 20.0% |
| !!! | GGAGTCAATATATTTTTAAA+TGG | - | chr3.4:65613663-65613682 | MS.gene05072:CDS | 20.0% |
| !!! | TTAATCGAGTTTTAAAACAT+GGG | - | chr3.4:65615018-65615037 | MS.gene05072:intron | 20.0% |
| !!! | TTTAATCGAGTTTTAAAACA+TGG | - | chr3.4:65615017-65615036 | MS.gene05072:intron | 20.0% |
| !!! | TTTACTTGATTTTTTTGTGT+AGG | - | chr3.4:65614592-65614611 | MS.gene05072:intron | 20.0% |
| ! | AAAATAAGCTTAATCCAAAC+GGG | - | chr3.4:65614102-65614121 | MS.gene05072:intron | 25.0% |
| ! | AAGAATTTCATACAAATAGG+TGG | + | chr3.4:65617025-65617044 | None:intergenic | 25.0% |
| ! | AGACTTATCAACAACAAATA+AGG | + | chr3.4:65614572-65614591 | None:intergenic | 25.0% |
| ! | ATCAATATTTCGTTGTTGAT+TGG | - | chr3.4:65615577-65615596 | MS.gene05072:intron | 25.0% |
| ! | ATGGAAGTGAAACATAAATA+CGG | + | chr3.4:65614369-65614388 | None:intergenic | 25.0% |
| ! | CAAAATAAGCTTAATCCAAA+CGG | - | chr3.4:65614101-65614120 | MS.gene05072:intron | 25.0% |
| ! | CGAACAAAATCACAAAATTA+GGG | + | chr3.4:65613576-65613595 | None:intergenic | 25.0% |
| ! | GAAGCTTGATATTGTTTATT+TGG | - | chr3.4:65616882-65616901 | MS.gene05072:CDS | 25.0% |
| ! | GACAAGAATTTCATACAAAT+AGG | + | chr3.4:65617028-65617047 | None:intergenic | 25.0% |
| ! | GATTATGATAGCTTAAGAAA+GGG | + | chr3.4:65614226-65614245 | None:intergenic | 25.0% |
| ! | TAAAATAAGCTAATCCAAAC+AGG | + | chr3.4:65613909-65613928 | None:intergenic | 25.0% |
| ! | TGATTATGATAGCTTAAGAA+AGG | + | chr3.4:65614227-65614246 | None:intergenic | 25.0% |
| ! | TTATAGGTTTGTATAAGCAA+TGG | - | chr3.4:65616060-65616079 | MS.gene05072:intron | 25.0% |
| !! | ATTTGTGAGTTGAATTGAAT+TGG | - | chr3.4:65613450-65613469 | MS.gene05072:CDS | 25.0% |
| !! | CCTAATTTTGTGATTTTGTT+CGG | - | chr3.4:65613574-65613593 | MS.gene05072:CDS | 25.0% |
| !! | CTAATTTTGTGATTTTGTTC+GGG | - | chr3.4:65613575-65613594 | MS.gene05072:CDS | 25.0% |
| !! | TTTAAATCACAGGTTTTCAT+AGG | - | chr3.4:65615978-65615997 | MS.gene05072:intron | 25.0% |
| !! | TTTGTGAGTTGAATTGAATT+GGG | - | chr3.4:65613451-65613470 | MS.gene05072:CDS | 25.0% |
| !!! | AGGAGTATTCTATTGAAAAA+GGG | - | chr3.4:65613062-65613081 | MS.gene05072:CDS | 25.0% |
| !!! | ATTTTAAAAATCGAACCAGA+TGG | - | chr3.4:65614880-65614899 | MS.gene05072:intron | 25.0% |
| !!! | GTTTTAAATTGATTGAACCA+GGG | + | chr3.4:65614960-65614979 | None:intergenic | 25.0% |
| AAAACACAATGCAAAGTTTG+AGG | + | chr3.4:65616730-65616749 | None:intergenic | 30.0% | |
| AAATAAGCTTAATCCAAACG+GGG | - | chr3.4:65614103-65614122 | MS.gene05072:intron | 30.0% | |
| AAATGTCTACAGTTTGATTG+CGG | - | chr3.4:65614929-65614948 | MS.gene05072:CDS | 30.0% | |
| AACAATCATAATCTGCAACA+GGG | + | chr3.4:65615084-65615103 | None:intergenic | 30.0% | |
| AAGTTGCTTCCAATGTAAAA+TGG | + | chr3.4:65616842-65616861 | None:intergenic | 30.0% | |
| AATAACAGTATTCTCTTGTC+TGG | + | chr3.4:65613311-65613330 | None:intergenic | 30.0% | |
| ACAAAGGCAAAAGAGAAAAT+TGG | + | chr3.4:65614469-65614488 | None:intergenic | 30.0% | |
| ACCAAGAATCTTAACATCAT+TGG | + | chr3.4:65614686-65614705 | None:intergenic | 30.0% | |
| ATCACTATTCTATTACCAGT+GGG | + | chr3.4:65613551-65613570 | None:intergenic | 30.0% | |
| CAATGGAAGAAAAAAGACAA+AGG | - | chr3.4:65616077-65616096 | MS.gene05072:intron | 30.0% | |
| CCGAACAAAATCACAAAATT+AGG | + | chr3.4:65613577-65613596 | None:intergenic | 30.0% | |
| GAAGAAACAAGTTACTGTTA+GGG | - | chr3.4:65613111-65613130 | MS.gene05072:CDS | 30.0% | |
| GATATTGTTTATTTGGCAGA+AGG | - | chr3.4:65616889-65616908 | MS.gene05072:CDS | 30.0% | |
| GATGTTAAGATTCTTGGTTT+AGG | - | chr3.4:65614688-65614707 | MS.gene05072:intron | 30.0% | |
| GTATTTATGTTTCACTTCCA+TGG | - | chr3.4:65614368-65614387 | MS.gene05072:CDS | 30.0% | |
| TAAAACGATTGAACATGACT+TGG | - | chr3.4:65614974-65614993 | MS.gene05072:intron | 30.0% | |
| TACAACTTTGTGAAAGTTCT+TGG | - | chr3.4:65616029-65616048 | MS.gene05072:intron | 30.0% | |
| TCTAAACAGATCTTAACTGA+AGG | - | chr3.4:65614182-65614201 | MS.gene05072:intron | 30.0% | |
| TCTATTGAAAAAGGGTTTGA+AGG | - | chr3.4:65613070-65613089 | MS.gene05072:CDS | 30.0% | |
| TGCACAATATATCTCAACAA+AGG | + | chr3.4:65614485-65614504 | None:intergenic | 30.0% | |
| TTAAGATTCTTGGTTTAGGA+TGG | - | chr3.4:65614692-65614711 | MS.gene05072:intron | 30.0% | |
| TTGTCATCAAATGAAAGAGT+AGG | + | chr3.4:65616137-65616156 | None:intergenic | 30.0% | |
| TTTCGAAAAATGAGTGCATA+AGG | + | chr3.4:65616659-65616678 | None:intergenic | 30.0% | |
| ! | AATATTTCGTTGTTGATTGG+TGG | - | chr3.4:65615580-65615599 | MS.gene05072:intron | 30.0% |
| ! | ATGGCTATACCATTTTACAT+TGG | - | chr3.4:65616830-65616849 | MS.gene05072:CDS | 30.0% |
| ! | TATCAATTTTGTTCGTGACT+TGG | - | chr3.4:65616766-65616785 | MS.gene05072:CDS | 30.0% |
| ! | TTGTGAGTTGAATTGAATTG+GGG | - | chr3.4:65613452-65613471 | MS.gene05072:CDS | 30.0% |
| ! | TTTGAAGTCTTGCATAAGAT+CGG | + | chr3.4:65616486-65616505 | None:intergenic | 30.0% |
| ! | TTTTCAATAGAATACTCCTC+CGG | + | chr3.4:65613061-65613080 | None:intergenic | 30.0% |
| !! | CGGTTGATAATGTATTTCTT+TGG | - | chr3.4:65615934-65615953 | MS.gene05072:intron | 30.0% |
| !! | CGTTTTAAATTGATTGAACC+AGG | + | chr3.4:65614961-65614980 | None:intergenic | 30.0% |
| !! | GAGGAGTATTCTATTGAAAA+AGG | - | chr3.4:65613061-65613080 | MS.gene05072:CDS | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | - | chr3.4:65616860-65616879 | MS.gene05072:CDS | 30.0% |
| !!! | ACTTGATTTTTTTGTGTAGG+TGG | - | chr3.4:65614595-65614614 | MS.gene05072:intron | 30.0% |
| !!! | CTTGATTTTTTTGTGTAGGT+GGG | - | chr3.4:65614596-65614615 | MS.gene05072:intron | 30.0% |
| !!! | GGAATTTGTTTTGCAATAGT+TGG | + | chr3.4:65614649-65614668 | None:intergenic | 30.0% |
| AAATTAGCCATCTTCACCAT+CGG | - | chr3.4:65616377-65616396 | MS.gene05072:intron | 35.0% | |
| AACAGTTTCCATACATCTGA+AGG | - | chr3.4:65615152-65615171 | MS.gene05072:intron | 35.0% | |
| AATAACTTGGCTCACAAACA+TGG | + | chr3.4:65616540-65616559 | None:intergenic | 35.0% | |
| AATACGGCCAAAATTGTCAA+AGG | + | chr3.4:65614353-65614372 | None:intergenic | 35.0% | |
| ATGAAACTGAATCTCACAAC+TGG | - | chr3.4:65613181-65613200 | MS.gene05072:CDS | 35.0% | |
| ATGTTTGTGAGCCAAGTTAT+TGG | - | chr3.4:65616539-65616558 | MS.gene05072:intron | 35.0% | |
| ATTAAAACATCACAACAGCG+AGG | + | chr3.4:65615003-65615022 | None:intergenic | 35.0% | |
| ATTGGTGGAATTCTTTCATG+GGG | - | chr3.4:65615595-65615614 | MS.gene05072:intron | 35.0% | |
| CAAAACAGGTTACATGACAT+TGG | - | chr3.4:65616502-65616521 | MS.gene05072:intron | 35.0% | |
| CAACAAGTTAGTGTACCTTT+CGG | + | chr3.4:65614774-65614793 | None:intergenic | 35.0% | |
| CAACAATCATAATCTGCAAC+AGG | + | chr3.4:65615085-65615104 | None:intergenic | 35.0% | |
| CAAGTTATTGGAACTGCTAT+CGG | - | chr3.4:65616551-65616570 | MS.gene05072:intron | 35.0% | |
| CAAGTTTATTCCTGTTCCTA+TGG | - | chr3.4:65616805-65616824 | MS.gene05072:CDS | 35.0% | |
| CATAGGAACAGGAATAAACT+TGG | + | chr3.4:65616807-65616826 | None:intergenic | 35.0% | |
| CATCAAATGAAAGAGTAGGT+GGG | + | chr3.4:65616133-65616152 | None:intergenic | 35.0% | |
| CATCACTATTCTATTACCAG+TGG | + | chr3.4:65613552-65613571 | None:intergenic | 35.0% | |
| CTTATGCAAGACTTCAAAAC+AGG | - | chr3.4:65616488-65616507 | MS.gene05072:intron | 35.0% | |
| GAAATCATGAAAGACTACTG+AGG | + | chr3.4:65614533-65614552 | None:intergenic | 35.0% | |
| GATTGGTGGAATTCTTTCAT+GGG | - | chr3.4:65615594-65615613 | MS.gene05072:intron | 35.0% | |
| GCCAATGATGTTAAGATTCT+TGG | - | chr3.4:65614682-65614701 | MS.gene05072:intron | 35.0% | |
| GGAAGAAACAAGTTACTGTT+AGG | - | chr3.4:65613110-65613129 | MS.gene05072:CDS | 35.0% | |
| GTATTCTCTTGTCTGGTAAA+AGG | + | chr3.4:65613304-65613323 | None:intergenic | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | + | chr3.4:65615180-65615199 | None:intergenic | 35.0% | |
| TAGAATAGCCAGAAAACACA+TGG | + | chr3.4:65616590-65616609 | None:intergenic | 35.0% | |
| TCATCAAATGAAAGAGTAGG+TGG | + | chr3.4:65616134-65616153 | None:intergenic | 35.0% | |
| TGAAACTGAATCTCACAACT+GGG | - | chr3.4:65613182-65613201 | MS.gene05072:CDS | 35.0% | |
| TGAATTGAATTGGGGTTACT+GGG | - | chr3.4:65613460-65613479 | MS.gene05072:CDS | 35.0% | |
| TGATTGGTGGAATTCTTTCA+TGG | - | chr3.4:65615593-65615612 | MS.gene05072:intron | 35.0% | |
| TTCAGATTGACATATCCAAG+TGG | - | chr3.4:65615107-65615126 | MS.gene05072:intron | 35.0% | |
| TTGAATTGAATTGGGGTTAC+TGG | - | chr3.4:65613459-65613478 | MS.gene05072:CDS | 35.0% | |
| TTTCGAAACATGGCAATACT+AGG | - | chr3.4:65616671-65616690 | MS.gene05072:intron | 35.0% | |
| TTTGGGCTAAAAAAGGAGAT+TGG | - | chr3.4:65615635-65615654 | MS.gene05072:intron | 35.0% | |
| ! | ACTTCCATGGTATTGAAACA+GGG | - | chr3.4:65614381-65614400 | MS.gene05072:CDS | 35.0% |
| ! | ATACTTTTCAACCAGCAGAA+GGG | + | chr3.4:65613620-65613639 | None:intergenic | 35.0% |
| ! | ATGGTTGTGGATTAACAGAT+TGG | - | chr3.4:65616333-65616352 | MS.gene05072:intron | 35.0% |
| ! | ATTTTTCTGCTACCTATGTG+GGG | - | chr3.4:65615530-65615549 | MS.gene05072:intron | 35.0% |
| ! | CTTCTTTGAATGTTTCTGCT+GGG | - | chr3.4:65613212-65613231 | MS.gene05072:CDS | 35.0% |
| ! | GAAGATGGCTAATTTTCCAT+AGG | + | chr3.4:65616372-65616391 | None:intergenic | 35.0% |
| ! | GATTTTTCTGCTACCTATGT+GGG | - | chr3.4:65615529-65615548 | MS.gene05072:intron | 35.0% |
| ! | GCATTGCATGTGTTTTCATT+TGG | - | chr3.4:65613520-65613539 | MS.gene05072:CDS | 35.0% |
| ! | GGTTTTTCTTTGTGAAGACA+TGG | - | chr3.4:65613242-65613261 | MS.gene05072:CDS | 35.0% |
| ! | TATACTTTTCAACCAGCAGA+AGG | + | chr3.4:65613621-65613640 | None:intergenic | 35.0% |
| ! | TGATTTTTCTGCTACCTATG+TGG | - | chr3.4:65615528-65615547 | MS.gene05072:intron | 35.0% |
| ! | TGCATGTGTTTTCATTTGGT+GGG | - | chr3.4:65613524-65613543 | MS.gene05072:CDS | 35.0% |
| ! | TTATATCGCCATGTGTTTTC+TGG | - | chr3.4:65616579-65616598 | MS.gene05072:intron | 35.0% |
| ! | TTATTTGGCAGAAGGTTGAT+AGG | - | chr3.4:65616897-65616916 | MS.gene05072:CDS | 35.0% |
| ! | TTGCATGTGTTTTCATTTGG+TGG | - | chr3.4:65613523-65613542 | MS.gene05072:CDS | 35.0% |
| !! | CAAAGTTTGAGGCAGTTTTT+CGG | + | chr3.4:65616719-65616738 | None:intergenic | 35.0% |
| !! | CTATTTGTTGCTAGCTTTCT+TGG | - | chr3.4:65614727-65614746 | MS.gene05072:intron | 35.0% |
| !! | CTGTTTCTATAAAGCCTGTT+TGG | - | chr3.4:65613892-65613911 | MS.gene05072:CDS | 35.0% |
| !! | TATTTGGCAGAAGGTTGATA+GGG | - | chr3.4:65616898-65616917 | MS.gene05072:CDS | 35.0% |
| !! | TGCACTCATTTTTCGAAACA+TGG | - | chr3.4:65616661-65616680 | MS.gene05072:intron | 35.0% |
| !!! | CGAGTTTTAAAACATGGGAT+GGG | - | chr3.4:65615023-65615042 | MS.gene05072:intron | 35.0% |
| !!! | CTTCTCCTTTAGCTTTTTGT+GGG | - | chr3.4:65615217-65615236 | MS.gene05072:intron | 35.0% |
| !!! | GATATGGGTTTCTGGTTTTT+GGG | - | chr3.4:65613485-65613504 | MS.gene05072:CDS | 35.0% |
| !!! | GATCTTTTTCAATGTGACTG+CGG | - | chr3.4:65615914-65615933 | MS.gene05072:intron | 35.0% |
| !!! | GATGCCTTTTTAAAACCTTG+AGG | - | chr3.4:65617070-65617089 | MS.gene05072:CDS | 35.0% |
| !!! | TCGAGTTTTAAAACATGGGA+TGG | - | chr3.4:65615022-65615041 | MS.gene05072:intron | 35.0% |
| !!! | TCTTCTCCTTTAGCTTTTTG+TGG | - | chr3.4:65615216-65615235 | MS.gene05072:intron | 35.0% |
| !!! | TGATATGGGTTTCTGGTTTT+TGG | - | chr3.4:65613484-65613503 | MS.gene05072:CDS | 35.0% |
| !!! | TTCTCCTTTAGCTTTTTGTG+GGG | - | chr3.4:65615218-65615237 | MS.gene05072:intron | 35.0% |
| !!! | TTTTTTTGTGTAGGTGGGTT+TGG | - | chr3.4:65614601-65614620 | MS.gene05072:intron | 35.0% |
| AAAATGAGTGCATAAGGTGC+AGG | + | chr3.4:65616653-65616672 | None:intergenic | 40.0% | |
| AAACATGGCAATACTAGGTG+TGG | - | chr3.4:65616676-65616695 | MS.gene05072:intron | 40.0% | |
| AAATGAGTGCATAAGGTGCA+GGG | + | chr3.4:65616652-65616671 | None:intergenic | 40.0% | |
| AAGAAGCAAGTACAAGCACT+TGG | - | chr3.4:65615188-65615207 | MS.gene05072:intron | 40.0% | |
| AATGGTATAGCCATAGCCAT+AGG | + | chr3.4:65616824-65616843 | None:intergenic | 40.0% | |
| ACAACCATACGCATTGCAAA+AGG | + | chr3.4:65616321-65616340 | None:intergenic | 40.0% | |
| ACCAAGTTGCTTGAAAAAGC+TGG | - | chr3.4:65613265-65613284 | MS.gene05072:CDS | 40.0% | |
| ACTTTAGCTGGTGGAAAATG+TGG | + | chr3.4:65616256-65616275 | None:intergenic | 40.0% | |
| AGATTGTTTATGACCCCGTT+TGG | + | chr3.4:65614119-65614138 | None:intergenic | 40.0% | |
| AGTTGCTTGAAAAAGCTGGT+TGG | - | chr3.4:65613269-65613288 | MS.gene05072:CDS | 40.0% | |
| AGTTGTATAGACCATCACCA+AGG | + | chr3.4:65616016-65616035 | None:intergenic | 40.0% | |
| ATAGCAATGATCCTTGGTGA+TGG | - | chr3.4:65616002-65616021 | MS.gene05072:intron | 40.0% | |
| ATAGGCATAGCAATGATCCT+TGG | - | chr3.4:65615996-65616015 | MS.gene05072:intron | 40.0% | |
| ATGGTGATAGCATGATGAGT+TGG | - | chr3.4:65615399-65615418 | MS.gene05072:CDS | 40.0% | |
| CCAGCAGAAACATTCAAAGA+AGG | + | chr3.4:65613214-65613233 | None:intergenic | 40.0% | |
| CCTCTCATTTGGGCTAAAAA+AGG | - | chr3.4:65615628-65615647 | MS.gene05072:intron | 40.0% | |
| CGATAGCAGTTCCAATAACT+TGG | + | chr3.4:65616553-65616572 | None:intergenic | 40.0% | |
| CTTTAGCTGGTGGAAAATGT+GGG | + | chr3.4:65616255-65616274 | None:intergenic | 40.0% | |
| GAAACCCCACAAAAAGCTAA+AGG | + | chr3.4:65615225-65615244 | None:intergenic | 40.0% | |
| GATTGAAGCAAGTGCAAAAC+TGG | - | chr3.4:65615866-65615885 | MS.gene05072:intron | 40.0% | |
| GCAAGAGCAAGAAAAGAGTT+TGG | + | chr3.4:65616992-65617011 | None:intergenic | 40.0% | |
| GCAAGTGCAAAACTGGAATT+TGG | - | chr3.4:65615873-65615892 | MS.gene05072:intron | 40.0% | |
| GTTCAATTAGCTGAACCATC+TGG | + | chr3.4:65614898-65614917 | None:intergenic | 40.0% | |
| GTTCTTGGCACAACTCTTAT+AGG | - | chr3.4:65616044-65616063 | MS.gene05072:intron | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | - | chr3.4:65616811-65616830 | MS.gene05072:CDS | 40.0% | |
| TCATTGGCAGTGTCAAATTC+TGG | + | chr3.4:65614670-65614689 | None:intergenic | 40.0% | |
| TCTAGTGGAATTGCATTCAG+TGG | - | chr3.4:65613349-65613368 | MS.gene05072:CDS | 40.0% | |
| TGGCTATTCTACCATGCTTT+CGG | - | chr3.4:65616599-65616618 | MS.gene05072:intron | 40.0% | |
| TGGCTCACAAACATGGATTT+CGG | + | chr3.4:65616533-65616552 | None:intergenic | 40.0% | |
| TTTAGCTGGTGGAAAATGTG+GGG | + | chr3.4:65616254-65616273 | None:intergenic | 40.0% | |
| TTTGCAAACTTCCCCACATT+TGG | - | chr3.4:65615281-65615300 | MS.gene05072:CDS | 40.0% | |
| ! | AAAAGGAGATTGGTTCTCTG+CGG | - | chr3.4:65615645-65615664 | MS.gene05072:intron | 40.0% |
| ! | AACTCTTTTCTTGCTCTTGC+TGG | - | chr3.4:65616992-65617011 | MS.gene05072:CDS | 40.0% |
| ! | AAGGAAAACTTGTTCCTACG+TGG | - | chr3.4:65613089-65613108 | MS.gene05072:CDS | 40.0% |
| ! | AATGTTTCTGCTGGGTTGTT+AGG | - | chr3.4:65613220-65613239 | MS.gene05072:CDS | 40.0% |
| ! | ACATTTTCCACCAGCTAAAG+TGG | - | chr3.4:65616255-65616274 | MS.gene05072:intron | 40.0% |
| ! | AGTCACGTACTTGTGTTGAT+AGG | + | chr3.4:65615315-65615334 | None:intergenic | 40.0% |
| ! | ATGTTTCTGCTGGGTTGTTA+GGG | - | chr3.4:65613221-65613240 | MS.gene05072:CDS | 40.0% |
| ! | ATTTTCCATAGGTCGATGCA+AGG | + | chr3.4:65616361-65616380 | None:intergenic | 40.0% |
| ! | CACTTCCATGGTATTGAAAC+AGG | - | chr3.4:65614380-65614399 | MS.gene05072:CDS | 40.0% |
| ! | CCTTCTTTGAATGTTTCTGC+TGG | - | chr3.4:65613211-65613230 | MS.gene05072:CDS | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | - | chr3.4:65614741-65614760 | MS.gene05072:CDS | 40.0% |
| ! | GTGTGCTCCTTTGACAATTT+TGG | - | chr3.4:65614343-65614362 | MS.gene05072:intron | 40.0% |
| ! | TTCCAATGGTTTTTCACTGC+TGG | - | chr3.4:65615245-65615264 | MS.gene05072:intron | 40.0% |
| ! | TTGGTCTTTGAGGAACATCT+CGG | + | chr3.4:65616168-65616187 | None:intergenic | 40.0% |
| ! | TTTTCCATAGGTCGATGCAA+GGG | + | chr3.4:65616360-65616379 | None:intergenic | 40.0% |
| ! | TTTTGCAATGCGTATGGTTG+TGG | - | chr3.4:65616320-65616339 | MS.gene05072:intron | 40.0% |
| ! | TTTTGTGGGGTTTCTTCCAA+TGG | - | chr3.4:65615231-65615250 | MS.gene05072:intron | 40.0% |
| ! | TTTTTCTGCTACCTATGTGG+GGG | - | chr3.4:65615531-65615550 | MS.gene05072:intron | 40.0% |
| !! | GTAACTTGTTTCTTCCACGT+AGG | + | chr3.4:65613106-65613125 | None:intergenic | 40.0% |
| !!! | ACCAGCTTTTTCAAGCAACT+TGG | + | chr3.4:65613269-65613288 | None:intergenic | 40.0% |
| !!! | CCTTTTTTAGCCCAAATGAG+AGG | + | chr3.4:65615631-65615650 | None:intergenic | 40.0% |
| AAACTTCCCCACATTTGGTC+TGG | - | chr3.4:65615286-65615305 | MS.gene05072:CDS | 45.0% | |
| AATGAAAGAGTAGGTGGGAG+AGG | + | chr3.4:65616128-65616147 | None:intergenic | 45.0% | |
| ACCTTGAAGACCATGTAAGC+TGG | + | chr3.4:65615683-65615702 | None:intergenic | 45.0% | |
| AGTTAGTGTACCTTTCGGAG+TGG | + | chr3.4:65614769-65614788 | None:intergenic | 45.0% | |
| ATAGCCATAGCCATAGGAAC+AGG | + | chr3.4:65616818-65616837 | None:intergenic | 45.0% | |
| ATAGGCTTCCAGACCAAATG+TGG | + | chr3.4:65615297-65615316 | None:intergenic | 45.0% | |
| ATGGCAATACTAGGTGTGGA+CGG | - | chr3.4:65616680-65616699 | MS.gene05072:intron | 45.0% | |
| CACCAGCAGTGAAAAACCAT+TGG | + | chr3.4:65615250-65615269 | None:intergenic | 45.0% | |
| CTGACCCTGTTTCAATACCA+TGG | + | chr3.4:65614388-65614407 | None:intergenic | 45.0% | |
| GATATTGAAAGCCACGACAC+TGG | - | chr3.4:65613004-65613023 | MS.gene05072:CDS | 45.0% | |
| GTTTGGCACCTTCAGATGTA+TGG | + | chr3.4:65615163-65615182 | None:intergenic | 45.0% | |
| TACCATGCTTTCGGTACTCT+TGG | - | chr3.4:65616608-65616627 | MS.gene05072:intron | 45.0% | |
| TAGCAAACCAGAAGGGGATT+TGG | + | chr3.4:65616187-65616206 | None:intergenic | 45.0% | |
| TAGGCTTCCAGACCAAATGT+GGG | + | chr3.4:65615296-65615315 | None:intergenic | 45.0% | |
| TCAAAGACCAAATCCCCTTC+TGG | - | chr3.4:65616177-65616196 | MS.gene05072:intron | 45.0% | |
| TGACGTGATACCACTTTAGC+TGG | + | chr3.4:65616268-65616287 | None:intergenic | 45.0% | |
| TGTCATGTGGCCTCTCATTT+GGG | - | chr3.4:65615618-65615637 | MS.gene05072:intron | 45.0% | |
| TTAGCTGGTGGAAAATGTGG+GGG | + | chr3.4:65616253-65616272 | None:intergenic | 45.0% | |
| ! | ACTTGCGTTGTTGCTTCTAG+TGG | - | chr3.4:65613334-65613353 | MS.gene05072:CDS | 45.0% |
| ! | AGAAGGGGATTTGGTCTTTG+AGG | + | chr3.4:65616178-65616197 | None:intergenic | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | - | chr3.4:65615605-65615624 | MS.gene05072:intron | 45.0% |
| ! | TTTGGATCAGCTGTTGCTTC+TGG | - | chr3.4:65616935-65616954 | MS.gene05072:CDS | 45.0% |
| !! | ACTGGGTTGATATGGGTTTC+TGG | - | chr3.4:65613477-65613496 | MS.gene05072:CDS | 45.0% |
| !! | CTAGCCTTTTGCAATGCGTA+TGG | - | chr3.4:65616314-65616333 | MS.gene05072:intron | 45.0% |
| !! | TGGGGTTACTGGGTTGATAT+GGG | - | chr3.4:65613470-65613489 | MS.gene05072:CDS | 45.0% |
| !! | TTGGGGTTACTGGGTTGATA+TGG | - | chr3.4:65613469-65613488 | MS.gene05072:CDS | 45.0% |
| !!! | ATTTTGTTCGGGCCTTGTTG+TGG | - | chr3.4:65613586-65613605 | MS.gene05072:CDS | 45.0% |
| !! | TTTAACAAAAAATTAAAAAA+GGG | + | chr3.4:65613411-65613430 | None:intergenic | 5.0% |
| AGGCTTCCAGACCAAATGTG+GGG | + | chr3.4:65615295-65615314 | None:intergenic | 50.0% | |
| AGGGCTAAGGCTGATGCATT+TGG | - | chr3.4:65616917-65616936 | MS.gene05072:CDS | 50.0% | |
| CACATGCTGCTAAACCAGCT+AGG | + | chr3.4:65616433-65616452 | None:intergenic | 50.0% | |
| CCTGCGATAGCAAACCAGAA+GGG | + | chr3.4:65616194-65616213 | None:intergenic | 50.0% | |
| CGTGATACCACTTTAGCTGG+TGG | + | chr3.4:65616265-65616284 | None:intergenic | 50.0% | |
| CTGCGATAGCAAACCAGAAG+GGG | + | chr3.4:65616193-65616212 | None:intergenic | 50.0% | |
| GCATTGCAAAAGGCTAGTGC+AGG | + | chr3.4:65616311-65616330 | None:intergenic | 50.0% | |
| GCCAGCTTACATGGTCTTCA+AGG | - | chr3.4:65615679-65615698 | MS.gene05072:intron | 50.0% | |
| GGTTGATCATCGTTCGACAC+CGG | + | chr3.4:65613040-65613059 | None:intergenic | 50.0% | |
| GTGTCATGTGGCCTCTCATT+TGG | - | chr3.4:65615617-65615636 | MS.gene05072:intron | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | + | chr3.4:65615545-65615564 | None:intergenic | 50.0% | |
| TCAACCAGCAGAAGGGTGAA+GGG | + | chr3.4:65613613-65613632 | None:intergenic | 50.0% | |
| TGAGCTGTTGCAGTACCACT+TGG | + | chr3.4:65615125-65615144 | None:intergenic | 50.0% | |
| TTCAACCAGCAGAAGGGTGA+AGG | + | chr3.4:65613614-65613633 | None:intergenic | 50.0% | |
| TTCAGTGGTTCCACTCCGAA+AGG | - | chr3.4:65614756-65614775 | MS.gene05072:CDS | 50.0% | |
| TTCGGTACTCTTGGTCAACC+TGG | - | chr3.4:65616617-65616636 | MS.gene05072:intron | 50.0% | |
| TTCTTGCTCTTGCTGGAGTG+CGG | - | chr3.4:65616999-65617018 | MS.gene05072:CDS | 50.0% | |
| ! | CATCTTCACCATCGGTGCTT+GGG | - | chr3.4:65616385-65616404 | MS.gene05072:intron | 50.0% |
| ! | CTAGCTGGTTTAGCAGCATG+TGG | - | chr3.4:65616431-65616450 | MS.gene05072:intron | 50.0% |
| ! | GGTGTCGAACGATGATCAAC+CGG | - | chr3.4:65613039-65613058 | MS.gene05072:CDS | 50.0% |
| ! | TTCACTGCTGGTGATGCTTG+TGG | - | chr3.4:65615257-65615276 | MS.gene05072:intron | 50.0% |
| ! | TTTCATTTGGTGGGTCCCAC+TGG | - | chr3.4:65613533-65613552 | MS.gene05072:CDS | 50.0% |
| !! | GACCAAGAGTACCGAAAGCA+TGG | + | chr3.4:65616613-65616632 | None:intergenic | 50.0% |
| !! | GCAGAAGGTTGATAGGGCTA+AGG | - | chr3.4:65616904-65616923 | MS.gene05072:CDS | 50.0% |
| AGGGTGAAGGGACCACAACA+AGG | + | chr3.4:65613601-65613620 | None:intergenic | 55.0% | |
| CGACACTGGTGCAGTTACAC+CGG | - | chr3.4:65613018-65613037 | MS.gene05072:CDS | 55.0% | |
| CTCGGAGAAGCCAGCTTACA+TGG | - | chr3.4:65615670-65615689 | MS.gene05072:intron | 55.0% | |
| CTGCTACCTATGTGGGGGTT+GGG | - | chr3.4:65615536-65615555 | MS.gene05072:intron | 55.0% | |
| CTGGTGGAAAATGTGGGGGA+TGG | + | chr3.4:65616249-65616268 | None:intergenic | 55.0% | |
| GCCTGCGATAGCAAACCAGA+AGG | + | chr3.4:65616195-65616214 | None:intergenic | 55.0% | |
| GTCGAACGATGATCAACCGG+AGG | - | chr3.4:65613042-65613061 | MS.gene05072:CDS | 55.0% | |
| GTGTAACTGCACCAGTGTCG+TGG | + | chr3.4:65613018-65613037 | None:intergenic | 55.0% | |
| GTTTGATTGCGGTTTCGCCC+TGG | - | chr3.4:65614940-65614959 | MS.gene05072:CDS | 55.0% | |
| TCTGCTACCTATGTGGGGGT+TGG | - | chr3.4:65615535-65615554 | MS.gene05072:intron | 55.0% | |
| TTCAGAACCCCATCGACGTG+CGG | - | chr3.4:65612973-65612992 | MS.gene05072:CDS | 55.0% | |
| ! | CCATCTTCACCATCGGTGCT+TGG | - | chr3.4:65616384-65616403 | MS.gene05072:intron | 55.0% |
| ! | GATTGGTTCTCTGCGGAGCT+CGG | - | chr3.4:65615652-65615671 | MS.gene05072:intron | 55.0% |
| ! | TGGTCCCTTGCATCGACCTA+TGG | - | chr3.4:65616353-65616372 | MS.gene05072:intron | 55.0% |
| !! | CCAAGCACCGATGGTGAAGA+TGG | + | chr3.4:65616387-65616406 | None:intergenic | 55.0% |
| !! | CCCTTCTGGTTTGCTATCGC+AGG | - | chr3.4:65616191-65616210 | MS.gene05072:intron | 55.0% |
| !! | GAGGCAGTTTTTCGGCAGAG+CGG | + | chr3.4:65616711-65616730 | None:intergenic | 55.0% |
| !! | GTAGGTGGGAGAGGAGCATT+TGG | + | chr3.4:65616119-65616138 | None:intergenic | 55.0% |
| CCATGAACCGCACGTCGATG+GGG | + | chr3.4:65612983-65613002 | None:intergenic | 60.0% | |
| GCCATGAACCGCACGTCGAT+GGG | + | chr3.4:65612984-65613003 | None:intergenic | 60.0% | |
| GGTGCAGGGTATGCTGAACC+AGG | + | chr3.4:65616638-65616657 | None:intergenic | 60.0% | |
| TGGTCCCTTCACCCTTCTGC+TGG | - | chr3.4:65613606-65613625 | MS.gene05072:CDS | 60.0% | |
| ! | TTCACCATCGGTGCTTGGGC+AGG | - | chr3.4:65616389-65616408 | MS.gene05072:intron | 60.0% |
| ACCAGCTAGGACACCGCCGT+TGG | + | chr3.4:65616420-65616439 | None:intergenic | 65.0% | |
| CCCCATCGACGTGCGGTTCA+TGG | - | chr3.4:65612980-65612999 | MS.gene05072:CDS | 65.0% | |
| CGCCATGAACCGCACGTCGA+TGG | + | chr3.4:65612985-65613004 | None:intergenic | 65.0% | |
| GCTTGGGCAGGTGCAGCCAA+CGG | - | chr3.4:65616401-65616420 | MS.gene05072:intron | 65.0% | |
| !! | TGCACCTGCCCAAGCACCGA+TGG | + | chr3.4:65616396-65616415 | None:intergenic | 65.0% |
| GCCAACGGCGGTGTCCTAGC+TGG | - | chr3.4:65616416-65616435 | MS.gene05072:intron | 70.0% | |
| TGGGCAGGTGCAGCCAACGG+CGG | - | chr3.4:65616404-65616423 | MS.gene05072:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 65612968 | 65617090 | 65612968 | ID=MS.gene05072 |
| chr3.4 | mRNA | 65612968 | 65617090 | 65612968 | ID=MS.gene05072.t1;Parent=MS.gene05072 |
| chr3.4 | exon | 65616688 | 65617090 | 65616688 | ID=MS.gene05072.t1.exon1;Parent=MS.gene05072.t1 |
| chr3.4 | CDS | 65616688 | 65617090 | 65616688 | ID=cds.MS.gene05072.t1;Parent=MS.gene05072.t1 |
| chr3.4 | exon | 65615281 | 65615444 | 65615281 | ID=MS.gene05072.t1.exon2;Parent=MS.gene05072.t1 |
| chr3.4 | CDS | 65615281 | 65615444 | 65615281 | ID=cds.MS.gene05072.t1;Parent=MS.gene05072.t1 |
| chr3.4 | exon | 65614885 | 65614966 | 65614885 | ID=MS.gene05072.t1.exon3;Parent=MS.gene05072.t1 |
| chr3.4 | CDS | 65614885 | 65614966 | 65614885 | ID=cds.MS.gene05072.t1;Parent=MS.gene05072.t1 |
| chr3.4 | exon | 65614734 | 65614854 | 65614734 | ID=MS.gene05072.t1.exon4;Parent=MS.gene05072.t1 |
| chr3.4 | CDS | 65614734 | 65614854 | 65614734 | ID=cds.MS.gene05072.t1;Parent=MS.gene05072.t1 |
| chr3.4 | exon | 65614350 | 65614539 | 65614350 | ID=MS.gene05072.t1.exon5;Parent=MS.gene05072.t1 |
| chr3.4 | CDS | 65614350 | 65614539 | 65614350 | ID=cds.MS.gene05072.t1;Parent=MS.gene05072.t1 |
| chr3.4 | exon | 65612968 | 65614068 | 65612968 | ID=MS.gene05072.t1.exon6;Parent=MS.gene05072.t1 |
| chr3.4 | CDS | 65612968 | 65614068 | 65612968 | ID=cds.MS.gene05072.t1;Parent=MS.gene05072.t1 |
| Gene Sequence |
| Protein sequence |
