AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051431

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051431.t1 MTR_1g063020 98.649 296 4 0 1 296 1 296 0.0 612
MS.gene051431.t1 MTR_7g102260 82.818 291 50 0 6 296 3 293 0.0 519
MS.gene051431.t1 MTR_4g057450 69.204 289 89 0 6 294 16 304 9.86e-154 432
MS.gene051431.t1 MTR_2g095800 66.436 289 95 2 8 294 21 309 3.35e-143 405
MS.gene051431.t1 MTR_1g033420 40.604 298 156 7 5 294 7 291 1.36e-69 219
MS.gene051431.t1 MTR_8g064180 37.459 307 175 6 1 294 8 310 6.73e-66 209
MS.gene051431.t1 MTR_1g105900 38.686 274 149 8 32 294 26 291 4.88e-61 196
MS.gene051431.t1 MTR_5g029100 38.603 272 152 4 35 294 37 305 6.62e-61 197
MS.gene051431.t1 MTR_3g089540 41.481 270 140 7 33 294 23 282 4.34e-60 193
MS.gene051431.t1 MTR_7g093530 39.245 265 144 6 39 294 23 279 2.04e-58 189
MS.gene051431.t1 MTR_8g081040 40.076 262 141 6 39 294 30 281 6.16e-58 187
MS.gene051431.t1 MTR_5g091730 41.597 238 125 6 61 294 51 278 1.29e-57 187
MS.gene051431.t1 MTR_7g084770 38.545 275 148 8 31 294 23 287 1.41e-57 187
MS.gene051431.t1 MTR_4g128410 38.868 265 145 7 39 294 24 280 1.43e-57 186
MS.gene051431.t1 MTR_6g088320 38.760 258 139 6 48 294 34 283 4.07e-57 186
MS.gene051431.t1 MTR_4g128570 40.840 262 130 9 39 294 30 272 4.61e-57 185
MS.gene051431.t1 MTR_4g128400 40.310 258 133 7 48 294 36 283 7.74e-57 185
MS.gene051431.t1 MTR_7g084760 39.098 266 141 8 40 294 32 287 1.08e-56 184
MS.gene051431.t1 MTR_3g084620 40.152 264 141 6 37 294 25 277 1.92e-56 184
MS.gene051431.t1 MTR_3g084630 40.392 255 136 5 37 286 25 268 2.05e-56 183
MS.gene051431.t1 MTR_7g084750 38.722 266 142 8 40 294 32 287 9.45e-56 182
MS.gene051431.t1 MTR_8g102910 40.840 262 128 8 48 294 30 279 2.13e-55 181
MS.gene051431.t1 MTR_4g126920 37.132 272 152 7 34 294 18 281 3.20e-55 181
MS.gene051431.t1 MTR_4g045853 38.583 254 133 5 48 286 35 280 4.88e-55 180
MS.gene051431.t1 MTR_2g089140 36.000 275 153 5 35 294 20 286 1.48e-54 179
MS.gene051431.t1 MTR_6g033085 37.879 264 147 7 40 294 32 287 1.63e-54 179
MS.gene051431.t1 MTR_4g128580 37.410 278 153 6 30 294 16 285 1.90e-54 179
MS.gene051431.t1 MTR_5g029100 39.407 236 130 3 69 294 42 274 2.19e-54 179
MS.gene051431.t1 MTR_1g105495 34.437 302 166 9 9 294 9 294 4.39e-54 178
MS.gene051431.t1 MTR_2g038860 36.667 270 132 7 39 286 25 277 8.69e-54 177
MS.gene051431.t1 MTR_2g038705 36.667 270 132 7 39 286 25 277 8.69e-54 177
MS.gene051431.t1 MTR_6g033055 37.500 264 148 7 40 294 32 287 9.21e-54 177
MS.gene051431.t1 MTR_8g102220 37.023 262 136 8 39 294 28 266 4.11e-51 169
MS.gene051431.t1 MTR_8g090100 36.727 275 150 7 35 294 16 281 5.00e-51 171
MS.gene051431.t1 MTR_8g013055 37.736 265 141 8 34 286 25 277 2.76e-50 168
MS.gene051431.t1 MTR_4g097640 36.194 268 154 7 36 294 28 287 9.06e-50 167
MS.gene051431.t1 MTR_4g097670 36.194 268 154 7 36 294 28 287 9.06e-50 167
MS.gene051431.t1 MTR_7g056090 37.248 298 150 11 7 294 11 281 1.81e-49 166
MS.gene051431.t1 MTR_2g089140 37.991 229 119 5 81 294 3 223 2.97e-49 163
MS.gene051431.t1 MTR_4g097700 36.226 265 152 7 39 294 68 324 4.85e-49 166
MS.gene051431.t1 MTR_4g128590 40.455 220 111 6 87 294 64 275 1.11e-48 163
MS.gene051431.t1 MTR_2g049030 32.342 269 156 11 35 294 25 276 7.17e-37 133
MS.gene051431.t1 MTR_2g049130 32.353 272 154 12 37 296 26 279 2.40e-36 131
MS.gene051431.t1 MTR_8g032640 33.333 174 99 6 65 234 38 198 6.85e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051431.t1 AT2G36870 81.100 291 55 0 5 295 8 298 0.0 503
MS.gene051431.t1 AT3G44990 64.966 294 102 1 1 294 1 293 4.46e-139 394
MS.gene051431.t1 AT2G36870 79.532 171 35 0 5 175 8 178 1.81e-100 292
MS.gene051431.t1 AT1G14720 39.405 269 152 5 34 294 25 290 2.27e-64 206
MS.gene051431.t1 AT1G10550 35.390 308 172 6 6 294 10 309 2.72e-64 204
MS.gene051431.t1 AT4G14130 41.791 268 134 7 39 294 27 284 8.21e-64 202
MS.gene051431.t1 AT1G32170 40.511 274 146 6 33 294 25 293 4.23e-62 200
MS.gene051431.t1 AT5G57550 38.246 285 154 6 7 286 6 273 7.78e-62 197
MS.gene051431.t1 AT2G01850 40.152 264 147 5 39 294 30 290 4.63e-61 197
MS.gene051431.t1 AT5G57530 40.370 270 142 8 35 294 22 282 1.83e-60 194
MS.gene051431.t1 AT3G23730 39.852 271 142 7 37 294 24 286 6.63e-60 193
MS.gene051431.t1 AT1G11545 38.989 277 138 8 37 294 35 299 4.38e-58 189
MS.gene051431.t1 AT5G57540 40.000 265 142 8 39 294 25 281 1.10e-57 187
MS.gene051431.t1 AT4G18990 37.193 285 151 6 33 294 33 312 1.55e-57 189
MS.gene051431.t1 AT5G57560 39.483 271 142 9 37 294 20 281 3.61e-57 186
MS.gene051431.t1 AT4G25810 40.000 270 141 9 37 294 23 283 2.71e-56 183
MS.gene051431.t1 AT5G48070 37.377 305 146 10 2 294 10 281 2.94e-56 183
MS.gene051431.t1 AT3G25050 36.466 266 153 5 38 295 33 290 3.14e-56 183
MS.gene051431.t1 AT4G30290 44.681 235 107 7 69 294 56 276 3.56e-56 182
MS.gene051431.t1 AT4G25820 41.729 266 136 9 39 294 29 285 3.89e-56 183
MS.gene051431.t1 AT4G30280 44.681 235 107 7 69 294 61 281 1.07e-55 182
MS.gene051431.t1 AT5G13870 33.887 301 171 7 1 294 8 287 1.95e-55 181
MS.gene051431.t1 AT5G13870 33.887 301 171 7 1 294 8 287 1.95e-55 181
MS.gene051431.t1 AT5G13870 33.887 301 171 7 1 294 8 287 1.95e-55 181
MS.gene051431.t1 AT1G65310 44.589 231 113 7 69 294 61 281 2.20e-55 181
MS.gene051431.t1 AT1G65310 44.589 231 113 7 69 294 83 303 3.31e-55 181
MS.gene051431.t1 AT4G30270 39.098 266 137 8 35 294 19 265 1.43e-54 178
MS.gene051431.t1 AT4G03210 36.194 268 140 5 35 286 24 276 1.54e-54 179
MS.gene051431.t1 AT2G14620 36.093 302 166 10 4 294 9 294 2.73e-54 179
MS.gene051431.t1 AT4G37800 38.806 268 147 6 36 294 30 289 6.63e-54 177
MS.gene051431.t1 AT4G13080 35.880 301 173 8 1 294 4 291 6.64e-54 177
MS.gene051431.t1 AT5G65730 36.803 269 153 7 35 294 30 290 1.64e-53 176
MS.gene051431.t1 AT2G06850 38.267 277 146 9 31 294 26 290 4.19e-53 175
MS.gene051431.t1 AT2G18800 37.778 270 136 8 48 294 36 296 2.48e-52 174
MS.gene051431.t1 AT4G13090 38.806 268 146 6 37 294 29 288 7.91e-52 172
MS.gene051431.t1 AT2G06850 40.336 238 119 8 68 294 5 230 3.72e-50 166
MS.gene051431.t1 AT4G03210 36.800 250 124 6 61 294 25 256 4.45e-49 164
MS.gene051431.t1 AT2G14620 37.872 235 129 7 69 294 18 244 5.82e-49 163
MS.gene051431.t1 AT4G28850 35.581 267 152 5 40 294 29 287 2.61e-48 163
MS.gene051431.t1 AT2G14620 37.991 229 125 7 75 294 13 233 2.06e-47 159
MS.gene051431.t1 AT4G18990 38.208 212 105 5 104 294 32 238 5.96e-42 146
MS.gene051431.t1 AT3G48580 34.082 267 133 10 42 294 36 273 7.41e-40 140
MS.gene051431.t1 AT3G48580 34.034 238 119 8 68 294 4 214 2.59e-36 129
MS.gene051431.t1 AT3G48580 29.963 267 124 11 42 294 36 253 2.08e-24 99.4

Find 92 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGACCAATGTGGGTTTA+TGG 0.178750 1.1:-47638455 MS.gene051431:CDS
CTTCCTTGGGTACCTCCTTA+TGG 0.183924 1.1:+47638496 None:intergenic
GGCCACCTTCCCCTGGTTAC+TGG 0.192690 1.1:-47640400 MS.gene051431:CDS
TGTGGGTTTATGGTTCTATT+TGG 0.204208 1.1:-47638445 MS.gene051431:CDS
ACTATTGTCAAGATCCTAAA+AGG 0.217459 1.1:-47638205 MS.gene051431:CDS
ATCAACATGGAACAACAATT+TGG 0.259205 1.1:-47640301 MS.gene051431:CDS
TTCCTTGGGTACCTCCTTAT+GGG 0.266893 1.1:+47638497 None:intergenic
TTCATCACTATGCTATAGTT+TGG 0.290387 1.1:-47639652 MS.gene051431:CDS
CAATGGTTATAGAAACCTTT+GGG 0.298310 1.1:-47640345 MS.gene051431:CDS
AAGATTTAACCCCAACATTC+AGG 0.298689 1.1:+47638167 None:intergenic
ACATTTGTCTGCAAAGTATA+AGG 0.303238 1.1:+47639755 None:intergenic
GAAGTAGACATTGAATTTCT+AGG 0.341397 1.1:-47639794 MS.gene051431:CDS
GTGGGTTTATGGTTCTATTT+GGG 0.354310 1.1:-47638444 MS.gene051431:CDS
CTCCTTCAAGCGATGCCTAT+TGG 0.357987 1.1:-47640421 MS.gene051431:CDS
CAGACAAATGTTTATATAAG+AGG 0.361231 1.1:-47639743 MS.gene051431:CDS
TAGACTAACACCTGAATGTT+GGG 0.370136 1.1:-47638177 MS.gene051431:CDS
AACAATGTACAGATTCTTAG+TGG 0.388025 1.1:-47638528 MS.gene051431:intron
GAATTTCTAGGGACAACATT+TGG 0.388283 1.1:-47639782 MS.gene051431:CDS
TTCCATGTTGATCCATGCTT+TGG 0.388299 1.1:+47640312 None:intergenic
AATGTTGCATCACTCTTCCT+TGG 0.393842 1.1:+47638482 None:intergenic
ACAATGGTTATAGAAACCTT+TGG 0.410802 1.1:-47640346 MS.gene051431:CDS
AACATTCAGGTGTTAGTCTA+TGG 0.416142 1.1:+47638180 None:intergenic
GTGACTTACATTAATTCCTT+AGG 0.417640 1.1:+47639626 None:intergenic
TTTGTGTACTTTGCAACAAA+AGG 0.422740 1.1:+47638365 None:intergenic
TAAACCCACATTGGTCTTAG+TGG 0.431879 1.1:+47638458 None:intergenic
CCATTTCGATCGGGATACTT+TGG 0.438416 1.1:-47640023 MS.gene051431:CDS
CGGCCACGGCCTCGCCGTAT+CGG 0.441815 1.1:-47638295 MS.gene051431:CDS
GCCTATTGGCCACCTTCCCC+TGG 0.447071 1.1:-47640407 MS.gene051431:CDS
TGCATCACGGTGGTGTCGTC+CGG 0.448578 1.1:-47638315 MS.gene051431:CDS
ACAACATTGGTCTATGAGTT+GGG 0.459656 1.1:-47638252 MS.gene051431:CDS
CCAAAGTATCCCGATCGAAA+TGG 0.463082 1.1:+47640023 None:intergenic
ACCAGGGGAAGGTGGCCAAT+AGG 0.463800 1.1:+47640406 None:intergenic
AACAACATTGGTCTATGAGT+TGG 0.476903 1.1:-47638253 MS.gene051431:CDS
ATGTTGCATCACTCTTCCTT+GGG 0.478571 1.1:+47638483 None:intergenic
GGCCAATAGGCATCGCTTGA+AGG 0.482859 1.1:+47640419 None:intergenic
TCATCATGGGCAACAGAAGA+TGG 0.483074 1.1:-47638416 MS.gene051431:CDS
ACGGTGGTGTCGTCCGGCCA+CGG 0.487364 1.1:-47638309 MS.gene051431:CDS
TCTAACAATGAAGCGCATCC+AGG 0.493067 1.1:-47639827 MS.gene051431:CDS
TTGGAACTTGGCCAGTAACC+AGG 0.493648 1.1:+47640389 None:intergenic
TCTACTTCATCATGAAATCC+TGG 0.494735 1.1:+47639809 None:intergenic
CTATTTGGGATGCTTCATCA+TGG 0.504142 1.1:-47638430 MS.gene051431:CDS
ATAGACCTGACTTTGGAACT+TGG 0.504684 1.1:+47640377 None:intergenic
ATTTGGCTTGATAGAACCTC+AGG 0.506453 1.1:-47640284 MS.gene051431:intron
ATAACTCCTGCAGTGTAGCC+AGG 0.507404 1.1:+47639981 None:intergenic
GCCTCGCCGTATCGGTCCGG+TGG 0.507497 1.1:-47638287 MS.gene051431:CDS
AAGTAGACATTGAATTTCTA+GGG 0.508075 1.1:-47639793 MS.gene051431:CDS
ACTGGCCAAGTTCCAAAGTC+AGG 0.515213 1.1:-47640382 MS.gene051431:CDS
ACGGCCTCGCCGTATCGGTC+CGG 0.518193 1.1:-47638290 MS.gene051431:CDS
TATATAAGAGGGAGTGGTGA+TGG 0.520979 1.1:-47639731 MS.gene051431:CDS
CTTCATCCTGGCTACACTGC+AGG 0.522870 1.1:-47639987 MS.gene051431:CDS
TAGTGGATGATATGCCCATA+AGG 0.525035 1.1:-47638511 MS.gene051431:CDS
CGATACGGCGAGGCCGTGGC+CGG 0.537351 1.1:+47638296 None:intergenic
GTCGAATCGTCCATTTCGAT+CGG 0.539068 1.1:-47640033 MS.gene051431:CDS
AATGTTTATATAAGAGGGAG+TGG 0.539977 1.1:-47639737 MS.gene051431:CDS
GAGAAATGAAATTTCATCTG+TGG 0.540326 1.1:-47639694 MS.gene051431:CDS
AAAGCTCATAGACCTGACTT+TGG 0.542912 1.1:+47640370 None:intergenic
AGACAAATGTTTATATAAGA+GGG 0.545157 1.1:-47639742 MS.gene051431:CDS
TGATCCATGCTTTGGTGCTG+AGG 0.547528 1.1:+47640320 None:intergenic
TATTTGGGATGCTTCATCAT+GGG 0.549893 1.1:-47638429 MS.gene051431:CDS
TGCTATAGTTTGGAATCCTA+AGG 0.550228 1.1:-47639642 MS.gene051431:CDS
TCGAATCGTCCATTTCGATC+GGG 0.552144 1.1:-47640032 MS.gene051431:CDS
GGACCGATACGGCGAGGCCG+TGG 0.552441 1.1:+47638292 None:intergenic
ATTTCCACTAAGACCAATGT+GGG 0.553604 1.1:-47638462 MS.gene051431:CDS
TGTACTTTGCAACAAAAGGT+TGG 0.556484 1.1:+47638369 None:intergenic
ATAGACTAACACCTGAATGT+TGG 0.559466 1.1:-47638178 MS.gene051431:CDS
GGCCAGTAACCAGGGGAAGG+TGG 0.570410 1.1:+47640398 None:intergenic
GTCAACCCACCGGACCGATA+CGG 0.571686 1.1:+47638281 None:intergenic
ACGACACCACCGTGATGCAT+AGG 0.586001 1.1:+47638319 None:intergenic
TGGAACTTGGCCAGTAACCA+GGG 0.586133 1.1:+47640390 None:intergenic
GGGTCCTCAGCACCAAAGCA+TGG 0.591378 1.1:-47640324 MS.gene051431:CDS
GCTTCGATTAAACTTCATCC+TGG 0.593516 1.1:-47639999 MS.gene051431:CDS
CTATTGTCAAGATCCTAAAA+GGG 0.595880 1.1:-47638204 MS.gene051431:CDS
CCTCGCCGTATCGGTCCGGT+GGG 0.599396 1.1:-47638286 MS.gene051431:CDS
CTTGGCCAGTAACCAGGGGA+AGG 0.603822 1.1:+47640395 None:intergenic
TGCCCATAAGGAGGTACCCA+AGG 0.604081 1.1:-47638499 MS.gene051431:CDS
TACACAAACTTCAAAGCTAG+TGG 0.609014 1.1:-47638350 MS.gene051431:CDS
TTGTTGTCTTGTCAACCCAC+CGG 0.610498 1.1:+47638271 None:intergenic
TTTGGTGCTGAGGACCCCAA+AGG 0.620328 1.1:+47640330 None:intergenic
CAAGCAAAGAGAAATATGAA+AGG 0.625937 1.1:+47640458 None:intergenic
TTGGGTTCAAAGACACCACA+TGG 0.630330 1.1:-47638234 MS.gene051431:CDS
CACCAAAGCATGGATCAACA+TGG 0.631601 1.1:-47640314 MS.gene051431:CDS
GGAACTTGGCCAGTAACCAG+GGG 0.650744 1.1:+47640391 None:intergenic
GGTTGACAAGACAACAACAT+TGG 0.653516 1.1:-47638265 MS.gene051431:CDS
AATGGTTATAGAAACCTTTG+GGG 0.656393 1.1:-47640344 MS.gene051431:CDS
ATAGAACCATAAACCCACAT+TGG 0.658123 1.1:+47638449 None:intergenic
CATTTCCACTAAGACCAATG+TGG 0.658778 1.1:-47638463 MS.gene051431:CDS
GTTGCACAGCCTATGCATCA+CGG 0.660505 1.1:-47638328 MS.gene051431:CDS
AGACTAACACCTGAATGTTG+GGG 0.661530 1.1:-47638176 MS.gene051431:CDS
GACAATAGTTATAAACCATG+TGG 0.677923 1.1:+47638219 None:intergenic
TGGATGATATGCCCATAAGG+AGG 0.688479 1.1:-47638508 MS.gene051431:CDS
CCCACCGGACCGATACGGCG+AGG 0.695099 1.1:+47638286 None:intergenic
GCACAGCCTATGCATCACGG+TGG 0.776007 1.1:-47638325 MS.gene051431:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAACAATCATA+TGG + chr1.1:47639393-47639412 None:intergenic 10.0%
!! AATAATTTAAATAACAACAA+GGG - chr1.1:47639289-47639308 MS.gene051431:intron 10.0%
!! GAAACTAATTATATATAATA+AGG + chr1.1:47639977-47639996 None:intergenic 10.0%
!! TAATAATTTAAATAACAACA+AGG - chr1.1:47639288-47639307 MS.gene051431:intron 10.0%
!!! TATATTTTTTTCAAAGAAAA+TGG + chr1.1:47639678-47639697 None:intergenic 10.0%
!!! TTTTTTTTATTTCAATCTAA+TGG - chr1.1:47639873-47639892 MS.gene051431:intron 10.0%
!! AAATGAAGTTAATTAATAGA+AGG - chr1.1:47638723-47638742 MS.gene051431:intron 15.0%
!! ATAATTAGAAAGAAAAATGT+AGG + chr1.1:47638570-47638589 None:intergenic 15.0%
!! GATAAATAAATGAAATAGAA+GGG + chr1.1:47639332-47639351 None:intergenic 15.0%
!! TGATAAATAAATGAAATAGA+AGG + chr1.1:47639333-47639352 None:intergenic 15.0%
!!! CATTTTTCTTTCTAATTATT+AGG - chr1.1:47638571-47638590 MS.gene051431:intron 15.0%
!! AAAAATGCAATAATGTAACT+TGG - chr1.1:47639538-47639557 MS.gene051431:intron 20.0%
!! AAAATGCAATAATGTAACTT+GGG - chr1.1:47639539-47639558 MS.gene051431:intron 20.0%
!! AGACAAATGTTTATATAAGA+GGG - chr1.1:47638897-47638916 MS.gene051431:intron 20.0%
!! TTCAAAGAAAATGGTATTAT+TGG + chr1.1:47639669-47639688 None:intergenic 20.0%
!!! AGTTATTTCCAAAATTACAA+TGG - chr1.1:47638474-47638493 MS.gene051431:CDS 20.0%
!!! TGACATTTTGTAAAATGAAA+TGG - chr1.1:47639636-47639655 MS.gene051431:CDS 20.0%
! AAGAAAAAATCACTTTCACA+TGG + chr1.1:47640023-47640042 None:intergenic 25.0%
! AAGTAGACATTGAATTTCTA+GGG - chr1.1:47638846-47638865 MS.gene051431:intron 25.0%
! CAGACAAATGTTTATATAAG+AGG - chr1.1:47638896-47638915 MS.gene051431:intron 25.0%
! GCATATGTTTGTGTTATAAT+CGG - chr1.1:47639418-47639437 MS.gene051431:intron 25.0%
! GGAACCTTACTAATTATAAA+TGG - chr1.1:47639911-47639930 MS.gene051431:intron 25.0%
! GTGACATTTCACTTAATAAA+TGG - chr1.1:47639095-47639114 MS.gene051431:intron 25.0%
! TCAAAAAAGTAGAGCATATA+GGG - chr1.1:47639464-47639483 MS.gene051431:intron 25.0%
! TCTTTCTAATTATTAGGAAG+TGG - chr1.1:47638577-47638596 MS.gene051431:intron 25.0%
! TGACGATTATTATACTATGT+CGG + chr1.1:47639205-47639224 None:intergenic 25.0%
! TTAAAGTTTCAGCAAAATCA+TGG + chr1.1:47638449-47638468 None:intergenic 25.0%
! TTAAATGTGACACTCTTTAA+GGG + chr1.1:47639242-47639261 None:intergenic 25.0%
! TTCAAAAAAGTAGAGCATAT+AGG - chr1.1:47639463-47639482 MS.gene051431:intron 25.0%
! TTCAGCAGAAAAAGAAATAT+TGG + chr1.1:47639493-47639512 None:intergenic 25.0%
! TTTATTATTCCTTTCGAATC+TGG - chr1.1:47639745-47639764 MS.gene051431:CDS 25.0%
!! ATTTGATTTCGTGAAACTTA+CGG - chr1.1:47638505-47638524 MS.gene051431:CDS 25.0%
!! TTTTCTGCTGAAACATAATA+GGG - chr1.1:47639501-47639520 MS.gene051431:intron 25.0%
!! TTTTTCTGCTGAAACATAAT+AGG - chr1.1:47639500-47639519 MS.gene051431:intron 25.0%
!!! AGCATAGTGATGAAATTTTT+TGG + chr1.1:47638981-47639000 None:intergenic 25.0%
!!! AGTGCCATTTATAATTAGTA+AGG + chr1.1:47639918-47639937 None:intergenic 25.0%
!!! ATTGATTTGTCTGATTCTTA+CGG - chr1.1:47639578-47639597 MS.gene051431:intron 25.0%
!!! TAGTGATGAAATTTTTTGGT+AGG + chr1.1:47638977-47638996 None:intergenic 25.0%
!!! TGTGAAAGTGATTTTTTCTT+TGG - chr1.1:47640023-47640042 MS.gene051431:CDS 25.0%
AACAATGTACAGATTCTTAG+TGG - chr1.1:47640111-47640130 MS.gene051431:intron 30.0%
AATGGTTATAGAAACCTTTG+GGG - chr1.1:47638295-47638314 MS.gene051431:CDS 30.0%
AATGTTTATATAAGAGGGAG+TGG - chr1.1:47638902-47638921 MS.gene051431:intron 30.0%
ACAATGGTTATAGAAACCTT+TGG - chr1.1:47638293-47638312 MS.gene051431:CDS 30.0%
ACATTATATGTGGAGAAGTA+GGG + chr1.1:47639774-47639793 None:intergenic 30.0%
ACATTTGTCTGCAAAGTATA+AGG + chr1.1:47638887-47638906 None:intergenic 30.0%
ACTATTGTCAAGATCCTAAA+AGG - chr1.1:47640434-47640453 MS.gene051431:CDS 30.0%
ATCAACATGGAACAACAATT+TGG - chr1.1:47638338-47638357 MS.gene051431:CDS 30.0%
ATTTCCAAAATTACAATGGC+CGG - chr1.1:47638478-47638497 MS.gene051431:CDS 30.0%
CAAGCAAAGAGAAATATGAA+AGG + chr1.1:47638184-47638203 None:intergenic 30.0%
CAATGGTTATAGAAACCTTT+GGG - chr1.1:47638294-47638313 MS.gene051431:CDS 30.0%
CTAATGGTCATGATATTGAA+GGG - chr1.1:47639889-47639908 MS.gene051431:intron 30.0%
CTATTGTCAAGATCCTAAAA+GGG - chr1.1:47640435-47640454 MS.gene051431:CDS 30.0%
CTTAAATGTGACACTCTTTA+AGG + chr1.1:47639243-47639262 None:intergenic 30.0%
GAAGTAGACATTGAATTTCT+AGG - chr1.1:47638845-47638864 MS.gene051431:intron 30.0%
GACAATAGTTATAAACCATG+TGG + chr1.1:47640423-47640442 None:intergenic 30.0%
GAGAAATGAAATTTCATCTG+TGG - chr1.1:47638945-47638964 MS.gene051431:intron 30.0%
GTGACTTACATTAATTCCTT+AGG + chr1.1:47639016-47639035 None:intergenic 30.0%
TAATGGTCATGATATTGAAG+GGG - chr1.1:47639890-47639909 MS.gene051431:intron 30.0%
TCTAATGGTCATGATATTGA+AGG - chr1.1:47639888-47639907 MS.gene051431:intron 30.0%
TCTATCTACTGGGAAAATTA+CGG - chr1.1:47638418-47638437 MS.gene051431:CDS 30.0%
TTCATCACTATGCTATAGTT+TGG - chr1.1:47638987-47639006 MS.gene051431:intron 30.0%
TTTGTGTACTTTGCAACAAA+AGG + chr1.1:47640277-47640296 None:intergenic 30.0%
! ATGTCACTTATACTTGAGAT+CGG + chr1.1:47639082-47639101 None:intergenic 30.0%
!! AGTGGTGATGGAAAAATTAT+AGG - chr1.1:47638920-47638939 MS.gene051431:intron 30.0%
ACATGGCTGCAATTGTATAA+TGG + chr1.1:47640006-47640025 None:intergenic 35.0%
ACTAATCAGATTCATACCTG+AGG + chr1.1:47638374-47638393 None:intergenic 35.0%
AGTGTAGATACTCTATCTAC+TGG - chr1.1:47638407-47638426 MS.gene051431:CDS 35.0%
ATAGAACCATAAACCCACAT+TGG + chr1.1:47640193-47640212 None:intergenic 35.0%
ATAGACTAACACCTGAATGT+TGG - chr1.1:47640461-47640480 MS.gene051431:CDS 35.0%
ATTTCCACTAAGACCAATGT+GGG - chr1.1:47640177-47640196 MS.gene051431:intron 35.0%
CACATTATATGTGGAGAAGT+AGG + chr1.1:47639775-47639794 None:intergenic 35.0%
GCTGCAATTGTATAATGGTA+TGG + chr1.1:47640001-47640020 None:intergenic 35.0%
GGATTCACACACATTATATG+TGG + chr1.1:47639784-47639803 None:intergenic 35.0%
GTCTGATTCTTACGGAATAT+AGG - chr1.1:47639586-47639605 MS.gene051431:intron 35.0%
GTGTAGATACTCTATCTACT+GGG - chr1.1:47638408-47638427 MS.gene051431:CDS 35.0%
TACACAAACTTCAAAGCTAG+TGG - chr1.1:47640289-47640308 MS.gene051431:CDS 35.0%
TAGACTAACACCTGAATGTT+GGG - chr1.1:47640462-47640481 MS.gene051431:CDS 35.0%
TCTACTTCATCATGAAATCC+TGG + chr1.1:47638833-47638852 None:intergenic 35.0%
TGTACTTTGCAACAAAAGGT+TGG + chr1.1:47640273-47640292 None:intergenic 35.0%
TTCACGAAATCAAATTGTGC+CGG + chr1.1:47638500-47638519 None:intergenic 35.0%
! AACAACATTGGTCTATGAGT+TGG - chr1.1:47640386-47640405 MS.gene051431:CDS 35.0%
! AACATTCAGGTGTTAGTCTA+TGG + chr1.1:47640462-47640481 None:intergenic 35.0%
! ACAACATTGGTCTATGAGTT+GGG - chr1.1:47640387-47640406 MS.gene051431:CDS 35.0%
! AGGTCTATGAGCTTTTACAA+TGG - chr1.1:47638277-47638296 MS.gene051431:CDS 35.0%
! GAATTTCTAGGGACAACATT+TGG - chr1.1:47638857-47638876 MS.gene051431:intron 35.0%
! GTGGGTTTATGGTTCTATTT+GGG - chr1.1:47640195-47640214 MS.gene051431:intron 35.0%
! TATTTGGGATGCTTCATCAT+GGG - chr1.1:47640210-47640229 MS.gene051431:intron 35.0%
! TGCTATAGTTTGGAATCCTA+AGG - chr1.1:47638997-47639016 MS.gene051431:intron 35.0%
! TGTGGGTTTATGGTTCTATT+TGG - chr1.1:47640194-47640213 MS.gene051431:intron 35.0%
AAAGCTCATAGACCTGACTT+TGG + chr1.1:47638272-47638291 None:intergenic 40.0%
AATGTTGCATCACTCTTCCT+TGG + chr1.1:47640160-47640179 None:intergenic 40.0%
AGACTAACACCTGAATGTTG+GGG - chr1.1:47640463-47640482 MS.gene051431:CDS 40.0%
ATCTACTGGGAAAATTACGG+TGG - chr1.1:47638421-47638440 MS.gene051431:CDS 40.0%
ATGTTGCATCACTCTTCCTT+GGG + chr1.1:47640159-47640178 None:intergenic 40.0%
CACTTATACTTGAGATCGGA+GGG + chr1.1:47639078-47639097 None:intergenic 40.0%
CATTTCCACTAAGACCAATG+TGG - chr1.1:47640176-47640195 MS.gene051431:intron 40.0%
CTAAGACCAATGTGGGTTTA+TGG - chr1.1:47640184-47640203 MS.gene051431:intron 40.0%
GCTTCGATTAAACTTCATCC+TGG - chr1.1:47638640-47638659 MS.gene051431:intron 40.0%
GGTTGACAAGACAACAACAT+TGG - chr1.1:47640374-47640393 MS.gene051431:CDS 40.0%
TATATAAGAGGGAGTGGTGA+TGG - chr1.1:47638908-47638927 MS.gene051431:intron 40.0%
TCACTTATACTTGAGATCGG+AGG + chr1.1:47639079-47639098 None:intergenic 40.0%
TTCCATGTTGATCCATGCTT+TGG + chr1.1:47638330-47638349 None:intergenic 40.0%
! CTATTTGGGATGCTTCATCA+TGG - chr1.1:47640209-47640228 MS.gene051431:intron 40.0%
! TAGTGGATGATATGCCCATA+AGG - chr1.1:47640128-47640147 MS.gene051431:intron 40.0%
! TTGTCAGCTAGTTTAGTAGC+TGG + chr1.1:47639805-47639824 None:intergenic 40.0%
!! ATAGACCTGACTTTGGAACT+TGG + chr1.1:47638265-47638284 None:intergenic 40.0%
!! ATTTGGCTTGATAGAACCTC+AGG - chr1.1:47638355-47638374 MS.gene051431:CDS 40.0%
!! GTTAGTCTATGGTCCCTTTT+AGG + chr1.1:47640451-47640470 None:intergenic 40.0%
!! TAAACCCACATTGGTCTTAG+TGG + chr1.1:47640184-47640203 None:intergenic 40.0%
CACCAAAGCATGGATCAACA+TGG - chr1.1:47638325-47638344 MS.gene051431:CDS 45.0%
CCATTTCGATCGGGATACTT+TGG - chr1.1:47638616-47638635 MS.gene051431:intron 45.0%
GTAGGGAATCCAGATTCGAA+AGG + chr1.1:47639757-47639776 None:intergenic 45.0%
GTCGAATCGTCCATTTCGAT+CGG - chr1.1:47638606-47638625 MS.gene051431:intron 45.0%
TCATCATGGGCAACAGAAGA+TGG - chr1.1:47640223-47640242 MS.gene051431:intron 45.0%
TCGAATCGTCCATTTCGATC+GGG - chr1.1:47638607-47638626 MS.gene051431:intron 45.0%
TCTAACAATGAAGCGCATCC+AGG - chr1.1:47638812-47638831 MS.gene051431:intron 45.0%
TGGATGATATGCCCATAAGG+AGG - chr1.1:47640131-47640150 MS.gene051431:intron 45.0%
TTCCTTGGGTACCTCCTTAT+GGG + chr1.1:47640145-47640164 None:intergenic 45.0%
TTGGGTTCAAAGACACCACA+TGG - chr1.1:47640405-47640424 MS.gene051431:CDS 45.0%
TTGTTGTCTTGTCAACCCAC+CGG + chr1.1:47640371-47640390 None:intergenic 45.0%
! CCAAAGTATCCCGATCGAAA+TGG + chr1.1:47638619-47638638 None:intergenic 45.0%
!! TGTGCCGGCCATTGTAATTT+TGG + chr1.1:47638485-47638504 None:intergenic 45.0%
ACTGGCCAAGTTCCAAAGTC+AGG - chr1.1:47638257-47638276 MS.gene051431:CDS 50.0%
ATAACTCCTGCAGTGTAGCC+AGG + chr1.1:47638661-47638680 None:intergenic 50.0%
CTCCTTCAAGCGATGCCTAT+TGG - chr1.1:47638218-47638237 MS.gene051431:CDS 50.0%
CTTCCTTGGGTACCTCCTTA+TGG + chr1.1:47640146-47640165 None:intergenic 50.0%
GTTGCACAGCCTATGCATCA+CGG - chr1.1:47640311-47640330 MS.gene051431:CDS 50.0%
TACTTGAGATCGGAGGGAGT+AGG + chr1.1:47639072-47639091 None:intergenic 50.0%
TGGAACTTGGCCAGTAACCA+GGG + chr1.1:47638252-47638271 None:intergenic 50.0%
TTGGAACTTGGCCAGTAACC+AGG + chr1.1:47638253-47638272 None:intergenic 50.0%
!! TGATCCATGCTTTGGTGCTG+AGG + chr1.1:47638322-47638341 None:intergenic 50.0%
ACGACACCACCGTGATGCAT+AGG + chr1.1:47640323-47640342 None:intergenic 55.0%
CTTCATCCTGGCTACACTGC+AGG - chr1.1:47638652-47638671 MS.gene051431:intron 55.0%
GGAACTTGGCCAGTAACCAG+GGG + chr1.1:47638251-47638270 None:intergenic 55.0%
GGAGGGAGTAGGATCGAAAG+AGG + chr1.1:47639061-47639080 None:intergenic 55.0%
! GGCCAATAGGCATCGCTTGA+AGG + chr1.1:47638223-47638242 None:intergenic 55.0%
!! TGCCCATAAGGAGGTACCCA+AGG - chr1.1:47640140-47640159 MS.gene051431:intron 55.0%
!! TTTGGTGCTGAGGACCCCAA+AGG + chr1.1:47638312-47638331 None:intergenic 55.0%
ACCAGGGGAAGGTGGCCAAT+AGG + chr1.1:47638236-47638255 None:intergenic 60.0%
CTTGGCCAGTAACCAGGGGA+AGG + chr1.1:47638247-47638266 None:intergenic 60.0%
GCACAGCCTATGCATCACGG+TGG - chr1.1:47640314-47640333 MS.gene051431:CDS 60.0%
GGGTCCTCAGCACCAAAGCA+TGG - chr1.1:47638315-47638334 MS.gene051431:CDS 60.0%
GTCAACCCACCGGACCGATA+CGG + chr1.1:47640361-47640380 None:intergenic 60.0%
!! TGCATCACGGTGGTGTCGTC+CGG - chr1.1:47640324-47640343 MS.gene051431:CDS 60.0%
GCCTATTGGCCACCTTCCCC+TGG - chr1.1:47638232-47638251 MS.gene051431:CDS 65.0%
GGCCACCTTCCCCTGGTTAC+TGG - chr1.1:47638239-47638258 MS.gene051431:CDS 65.0%
GGCCAGTAACCAGGGGAAGG+TGG + chr1.1:47638244-47638263 None:intergenic 65.0%
! ACGGCCTCGCCGTATCGGTC+CGG - chr1.1:47640349-47640368 MS.gene051431:CDS 70.0%
! CCTCGCCGTATCGGTCCGGT+GGG - chr1.1:47640353-47640372 MS.gene051431:CDS 70.0%
!! ACGGTGGTGTCGTCCGGCCA+CGG - chr1.1:47640330-47640349 MS.gene051431:CDS 70.0%
CCCACCGGACCGATACGGCG+AGG + chr1.1:47640356-47640375 None:intergenic 75.0%
CGATACGGCGAGGCCGTGGC+CGG + chr1.1:47640346-47640365 None:intergenic 75.0%
CGGCCACGGCCTCGCCGTAT+CGG - chr1.1:47640344-47640363 MS.gene051431:CDS 75.0%
GGACCGATACGGCGAGGCCG+TGG + chr1.1:47640350-47640369 None:intergenic 75.0%
! GCCTCGCCGTATCGGTCCGG+TGG - chr1.1:47640352-47640371 MS.gene051431:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 47638172 47640489 47638172 ID=MS.gene051431
chr1.1 mRNA 47638172 47640489 47638172 ID=MS.gene051431.t1;Parent=MS.gene051431
chr1.1 exon 47640285 47640489 47640285 ID=MS.gene051431.t1.exon1;Parent=MS.gene051431.t1
chr1.1 CDS 47640285 47640489 47640285 ID=cds.MS.gene051431.t1;Parent=MS.gene051431.t1
chr1.1 exon 47639968 47640068 47639968 ID=MS.gene051431.t1.exon2;Parent=MS.gene051431.t1
chr1.1 CDS 47639968 47640068 47639968 ID=cds.MS.gene051431.t1;Parent=MS.gene051431.t1
chr1.1 exon 47639635 47639852 47639635 ID=MS.gene051431.t1.exon3;Parent=MS.gene051431.t1
chr1.1 CDS 47639635 47639852 47639635 ID=cds.MS.gene051431.t1;Parent=MS.gene051431.t1
chr1.1 exon 47638172 47638538 47638172 ID=MS.gene051431.t1.exon4;Parent=MS.gene051431.t1
chr1.1 CDS 47638172 47638538 47638172 ID=cds.MS.gene051431.t1;Parent=MS.gene051431.t1
Gene Sequence

>MS.gene051431

ATGGCTTTTCCTTTCATATTTCTCTTTGCTTGTTTATTCTTTATTGCTCCTTCAAGCGATGCCTATTGGCCACCTTCCCCTGGTTACTGGCCAAGTTCCAAAGTCAGGTCTATGAGCTTTTACAATGGTTATAGAAACCTTTGGGGTCCTCAGCACCAAAGCATGGATCAACATGGAACAACAATTTGGCTTGATAGAACCTCAGGTATGAATCTGATTAGTTTCGATTCACGTTAGTGTAGATACTCTATCTACTGGGAAAATTACGGTGGTACCATGATTTTGCTGAAACTTTAAAGTGTAGTTATTTCCAAAATTACAATGGCCGGCACAATTTGATTTCGTGAAACTTACGGCGAATTCAAACATGCACAAAATATATCATTGACATGTAACCTACATTTTTCTTTCTAATTATTAGGAAGTGGATTCAAGTCGAATCGTCCATTTCGATCGGGATACTTTGGCGCTTCGATTAAACTTCATCCTGGCTACACTGCAGGAGTTATAACAGCTTTTTATGTAAGATTAAGATATGATCATGATTAAAAAAATGAAGTTAATTAATAGAAGGTTAAACATTTTTTTTAAAATTTGAGTGTGTGATAAATTTTACTAATGAGTTGATCAATTGCAGCTTTCTAACAATGAAGCGCATCCAGGATTTCATGATGAAGTAGACATTGAATTTCTAGGGACAACATTTGGAAAGCCTTATACTTTGCAGACAAATGTTTATATAAGAGGGAGTGGTGATGGAAAAATTATAGGCAGAGAAATGAAATTTCATCTGTGGTTTGATCCTACCAAAAAATTTCATCACTATGCTATAGTTTGGAATCCTAAGGAATTAATGTAAGTCACTGTTAATTTTCACTATATTACTCCTCTTTCGATCCTACTCCCTCCGATCTCAAGTATAAGTGACATTTCACTTAATAAATGGTATTGTGTCTAGTTTCTAATATTGATTTTAGATACATAATTAATTAAATGAATTAAAAAAATTAATTTTTTCTTATAATAGAGACCGACATAGTATAATAATCGTCACAGAAAAAATTTATCCCTTAAAGAGTGTCACATTTAAGATATTATTTTTCACTTTTGTATTTATAATAATTTAAATAACAACAAGGGATAGTTTATTAAAATTACCCTTCTATTTCATTTATTTATCATTGTTTTTAATTTGTATGAAATGCTTAAATTAAACAACCATATGATTGTTTTTTTTTTTTAATAAGCATATGTTTGTGTTATAATCGGTTAGACTTTATTTTTGTGCTAGTTCAAAAAAGTAGAGCATATAGGGTAGCCAATATTTCTTTTTCTGCTGAAACATAATAGGGTAGATGATAACAAAAAAAATGCAATAATGTAACTTGGGTCTTTGTCTGTGTCATATTGATTTGTCTGATTCTTACGGAATATAGGTAATACAACAGTGTATGCACGAATGATTGACATTTTGTAAAATGAAATGGAAGCAAACCAATAATACCATTTTCTTTGAAAAAAATATATCATTTTCTTTGAAATTAAAGAATGTGAGAATAGAAGTATAATCTTTTTTATTATTCCTTTCGAATCTGGATTCCCTACTTCTCCACATATAATGTGTGTGAATCCAGCTACTAAACTAGCTGACAAAAAAAACAGTAGAGAGTTGTCTTACTAAATTTTAATCATAACAATTATTTTTTTTTATTTCAATCTAATGGTCATGATATTGAAGGGGAACCTTACTAATTATAAATGGCACTAATAACAATCTAGTGATCTACATGTGTTTTTTTATACCTTATTATATATAATTAGTTTCACCATACCATTATACAATTGCAGCCATGTGAAAGTGATTTTTTCTTTGGTACAGTGAAGTGATTTTTATTAACTTGTTTTTGTAATATATATTCTTTAACTTACATTATAATTAAACAATGTACAGATTCTTAGTGGATGATATGCCCATAAGGAGGTACCCAAGGAAGAGTGATGCAACATTTCCACTAAGACCAATGTGGGTTTATGGTTCTATTTGGGATGCTTCATCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTACAAATACCAACCTTTTGTTGCAAAGTACACAAACTTCAAAGCTAGTGGTTGCACAGCCTATGCATCACGGTGGTGTCGTCCGGCCACGGCCTCGCCGTATCGGTCCGGTGGGTTGACAAGACAACAACATTGGTCTATGAGTTGGGTTCAAAGACACCACATGGTTTATAACTATTGTCAAGATCCTAAAAGGGACCATAGACTAACACCTGAATGTTGGGGTTAA
Protein sequence

>MS.gene051431.t1

MAFPFIFLFACLFFIAPSSDAYWPPSPGYWPSSKVRSMSFYNGYRNLWGPQHQSMDQHGTTIWLDRTSGSGFKSNRPFRSGYFGASIKLHPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTKKFHHYAIVWNPKELIFLVDDMPIRRYPRKSDATFPLRPMWVYGSIWDASSWATEDGKYKADYKYQPFVAKYTNFKASGCTAYASRWCRPATASPYRSGGLTRQQHWSMSWVQRHHMVYNYCQDPKRDHRLTPECWG