Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051473.t1 | XP_003590457.1 | 97.3 | 299 | 8 | 0 | 1 | 299 | 1 | 299 | 3.00E-172 | 614.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051473.t1 | Q96G74 | 27.6 | 127 | 89 | 1 | 171 | 294 | 188 | 314 | 2.0e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051473.t1 | G7IA91 | 97.3 | 299 | 8 | 0 | 1 | 299 | 1 | 299 | 2.2e-172 | 614.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051473 | MS.gene005908 | PPI |
| MS.gene99991 | MS.gene051473 | PPI |
| MS.gene051473 | MS.gene34070 | PPI |
| MS.gene34071 | MS.gene051473 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051473.t1 | MTR_1g063900 | 94.839 | 310 | 15 | 1 | 1 | 310 | 1 | 309 | 0.0 | 613 |
| MS.gene051473.t1 | MTR_1g063900 | 97.048 | 271 | 8 | 0 | 1 | 271 | 1 | 271 | 0.0 | 552 |
| MS.gene051473.t1 | MTR_1g094650 | 47.879 | 330 | 140 | 7 | 8 | 310 | 10 | 334 | 2.98e-89 | 271 |
| MS.gene051473.t1 | MTR_6g033065 | 54.268 | 164 | 74 | 1 | 147 | 310 | 44 | 206 | 5.45e-66 | 207 |
| MS.gene051473.t1 | MTR_3g081150 | 57.432 | 148 | 63 | 0 | 150 | 297 | 47 | 194 | 1.14e-62 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051473.t1 | AT5G03330 | 55.474 | 274 | 107 | 5 | 45 | 303 | 50 | 323 | 3.67e-92 | 278 |
| MS.gene051473.t1 | AT5G03330 | 55.474 | 274 | 107 | 5 | 45 | 303 | 50 | 323 | 3.67e-92 | 278 |
| MS.gene051473.t1 | AT5G03330 | 54.448 | 281 | 112 | 6 | 45 | 310 | 50 | 329 | 3.41e-91 | 276 |
| MS.gene051473.t1 | AT5G03330 | 54.448 | 281 | 112 | 6 | 45 | 310 | 50 | 329 | 3.41e-91 | 276 |
| MS.gene051473.t1 | AT5G04250 | 43.087 | 311 | 158 | 3 | 1 | 296 | 1 | 307 | 1.86e-79 | 246 |
| MS.gene051473.t1 | AT5G04250 | 43.087 | 311 | 158 | 3 | 1 | 296 | 1 | 307 | 1.86e-79 | 246 |
| MS.gene051473.t1 | AT3G02070 | 58.824 | 153 | 63 | 0 | 147 | 299 | 33 | 185 | 1.39e-66 | 208 |
| MS.gene051473.t1 | AT3G02070 | 58.824 | 153 | 63 | 0 | 147 | 299 | 33 | 185 | 1.39e-66 | 208 |
| MS.gene051473.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 6.54e-53 | 174 |
| MS.gene051473.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 8.99e-53 | 174 |
| MS.gene051473.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 8.99e-53 | 174 |
| MS.gene051473.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 8.99e-53 | 174 |
| MS.gene051473.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 8.99e-53 | 174 |
| MS.gene051473.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 8.99e-53 | 174 |
| MS.gene051473.t1 | AT2G39320 | 40.404 | 99 | 40 | 1 | 198 | 296 | 2 | 81 | 1.81e-16 | 76.6 |
Find 57 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCATTGGATGATGAAAT+TGG | 0.162385 | 1.1:-48291680 | MS.gene051473:CDS |
| CATGGAATATAATGAATATT+TGG | 0.203978 | 1.1:-48289941 | MS.gene051473:CDS |
| AAGAAAACCTTACCTCCTTT+TGG | 0.305900 | 1.1:+48289363 | None:intergenic |
| ACATATCCTTCATATATATC+TGG | 0.343275 | 1.1:+48289967 | None:intergenic |
| CATATGAAGGCTCAGAAGTA+TGG | 0.356593 | 1.1:+48291942 | None:intergenic |
| CCTTCAAGCTGCGGCAGATT+CGG | 0.397825 | 1.1:-48289780 | MS.gene051473:intron |
| CTTCTGAGCCTTCATATGAT+TGG | 0.400034 | 1.1:-48291937 | MS.gene051473:CDS |
| CCGAATCTGCCGCAGCTTGA+AGG | 0.413876 | 1.1:+48289780 | None:intergenic |
| ATCAGATCATGAAAGGCTTC+TGG | 0.414468 | 1.1:-48290592 | MS.gene051473:CDS |
| CAAATATTCATTATATTCCA+TGG | 0.419565 | 1.1:+48289942 | None:intergenic |
| CTCACAAACTTGTGGTGATC+AGG | 0.420249 | 1.1:+48290121 | None:intergenic |
| ATTACAGTTATATGACTTTG+TGG | 0.422681 | 1.1:-48290349 | MS.gene051473:CDS |
| TGATCTCGTCATTCTCTACT+TGG | 0.423582 | 1.1:+48292047 | None:intergenic |
| GAAGCTAAACTTACAGGAAT+GGG | 0.430027 | 1.1:+48291635 | None:intergenic |
| TACTTTCAGAAGTATCATAA+TGG | 0.431762 | 1.1:+48292071 | None:intergenic |
| CTATGATAAATCCTCACTTC+AGG | 0.441779 | 1.1:+48289330 | None:intergenic |
| ATCCATTGGATGATGAAATT+GGG | 0.458225 | 1.1:-48291679 | MS.gene051473:CDS |
| ACAAGGTGATGGTAATTGTC+AGG | 0.460550 | 1.1:-48290316 | MS.gene051473:intron |
| GACATAATTCAACATGATAC+TGG | 0.460687 | 1.1:-48292124 | MS.gene051473:CDS |
| GCTTCTTGACAATTATCCAT+TGG | 0.473123 | 1.1:-48291693 | MS.gene051473:CDS |
| CCGATGATGAGCTATTGTTC+AGG | 0.473899 | 1.1:-48291905 | MS.gene051473:CDS |
| TGAGAAACCAAAAGGAGGTA+AGG | 0.474083 | 1.1:-48289370 | MS.gene051473:CDS |
| TGAAACTAGGAGTGGTGAAT+GGG | 0.478508 | 1.1:-48289816 | MS.gene051473:intron |
| GATGTTGCTTCATCAATAGA+TGG | 0.481748 | 1.1:+48290612 | None:intergenic |
| AGAAGCTAAACTTACAGGAA+TGG | 0.503330 | 1.1:+48291634 | None:intergenic |
| CGAATCTGCCGCAGCTTGAA+GGG | 0.519490 | 1.1:+48289781 | None:intergenic |
| ATGAAACTAGGAGTGGTGAA+TGG | 0.525646 | 1.1:-48289817 | MS.gene051473:intron |
| TGAAGTAGAGGGAGTCTCAT+CGG | 0.525785 | 1.1:-48291717 | MS.gene051473:CDS |
| GCATTCAGATGTTGTTCAGT+GGG | 0.529867 | 1.1:-48292197 | MS.gene051473:CDS |
| AATATTTGGATAAGATGTCT+AGG | 0.530005 | 1.1:-48289927 | MS.gene051473:intron |
| TCTCATCCAGATATATATGA+AGG | 0.537154 | 1.1:-48289973 | MS.gene051473:CDS |
| TTGTAGTCCTAGTGAAGTAG+AGG | 0.540675 | 1.1:-48291729 | MS.gene051473:CDS |
| TGAGCGTTCAAGTTATTCAC+AGG | 0.542997 | 1.1:-48291981 | MS.gene051473:CDS |
| AAATATTCATTATATTCCAT+GGG | 0.552117 | 1.1:+48289943 | None:intergenic |
| GAGACGAAAAGTTGTGAACC+AGG | 0.558171 | 1.1:-48290101 | MS.gene051473:intron |
| GTGTTATGCCAATCATATGA+AGG | 0.562233 | 1.1:+48291929 | None:intergenic |
| ATTATGTCACCATAGTATCC+AGG | 0.576326 | 1.1:+48292139 | None:intergenic |
| AAGCAACATCAGATCATGAA+AGG | 0.577443 | 1.1:-48290599 | MS.gene051473:CDS |
| GAGCATAAAGTACAAGGTGA+TGG | 0.591615 | 1.1:-48290327 | MS.gene051473:CDS |
| GGTCATGATTATGCACATGA+AGG | 0.605365 | 1.1:-48291782 | MS.gene051473:CDS |
| AGCATTCAGATGTTGTTCAG+TGG | 0.611379 | 1.1:-48292198 | MS.gene051473:CDS |
| CCTGAACAATAGCTCATCAT+CGG | 0.613174 | 1.1:+48291905 | None:intergenic |
| CTCCCAATTTCATCATCCAA+TGG | 0.616863 | 1.1:+48291677 | None:intergenic |
| GAGACTCCCTCTACTTCACT+AGG | 0.617455 | 1.1:+48291722 | None:intergenic |
| GAAACTAGGAGTGGTGAATG+GGG | 0.624351 | 1.1:-48289815 | MS.gene051473:intron |
| TTTGTGGAGCATAAAGTACA+AGG | 0.635922 | 1.1:-48290333 | MS.gene051473:CDS |
| ATATGAAGGATATGTTCCCA+TGG | 0.636647 | 1.1:-48289959 | MS.gene051473:CDS |
| TCTTTCTCCAGTATGGTGTG+AGG | 0.638738 | 1.1:-48289449 | MS.gene051473:intron |
| TGTAGTCCTAGTGAAGTAGA+GGG | 0.639828 | 1.1:-48291728 | MS.gene051473:CDS |
| TCATGTGACCCTTCAAGCTG+CGG | 0.640751 | 1.1:-48289789 | MS.gene051473:CDS |
| ATCATGAAAGGCTTCTGGAG+AGG | 0.644141 | 1.1:-48290587 | MS.gene051473:intron |
| ATGATGAGCTATTGTTCAGG+AGG | 0.650253 | 1.1:-48291902 | MS.gene051473:intron |
| ACAACTGATCAGATAACGCA+CGG | 0.650761 | 1.1:+48290152 | None:intergenic |
| TGGTAGTGAGACCTGAAGTG+AGG | 0.651941 | 1.1:-48289341 | MS.gene051473:CDS |
| CATTGGATGATGAAATTGGG+AGG | 0.656789 | 1.1:-48291676 | MS.gene051473:CDS |
| CATTCAGATGTTGTTCAGTG+GGG | 0.679592 | 1.1:-48292196 | MS.gene051473:CDS |
| TAGTATCCAGGACTAAAACG+AGG | 0.765147 | 1.1:+48292151 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTGTTTATAAAAATTT+AGG | - | chr1.1:48291054-48291073 | MS.gene051473:intron | 10.0% |
| !!! | TTTGTTATAATATTTGAATT+TGG | - | chr1.1:48291985-48292004 | MS.gene051473:CDS | 10.0% |
| !! | AAAGAGAATAAAAAAATAAC+AGG | + | chr1.1:48292052-48292071 | None:intergenic | 15.0% |
| !! | AAATATTCATTATATTCCAT+GGG | + | chr1.1:48291576-48291595 | None:intergenic | 15.0% |
| !! | AAGAAAATAAAAGAATGTTA+CGG | + | chr1.1:48290462-48290481 | None:intergenic | 15.0% |
| !! | TTGTTTATAAAAATTTAGGT+TGG | - | chr1.1:48291058-48291077 | MS.gene051473:intron | 15.0% |
| !!! | TCGTACAAAATATTTTATAT+AGG | + | chr1.1:48291646-48291665 | None:intergenic | 15.0% |
| !!! | TTAATCTTTTTGCATAAATT+TGG | - | chr1.1:48289683-48289702 | MS.gene051473:intron | 15.0% |
| !!! | TTATAGTTTGTAAATGAAAA+AGG | - | chr1.1:48290669-48290688 | MS.gene051473:intron | 15.0% |
| !!! | TTTTTGTACATTATTATCAT+GGG | - | chr1.1:48291486-48291505 | MS.gene051473:intron | 15.0% |
| !! | AACCAAAAGTAAATAATATG+GGG | + | chr1.1:48291032-48291051 | None:intergenic | 20.0% |
| !! | AAGAAAGAAAAAGTTGTTAT+TGG | + | chr1.1:48291674-48291693 | None:intergenic | 20.0% |
| !! | AGAACCAAAAGTAAATAATA+TGG | + | chr1.1:48291034-48291053 | None:intergenic | 20.0% |
| !! | ATTAGAAAGGGATATAAATA+AGG | - | chr1.1:48290612-48290631 | MS.gene051473:CDS | 20.0% |
| !! | CAAATATTCATTATATTCCA+TGG | + | chr1.1:48291577-48291596 | None:intergenic | 20.0% |
| !! | CATGGAATATAATGAATATT+TGG | - | chr1.1:48291575-48291594 | MS.gene051473:intron | 20.0% |
| !! | GAACCAAAAGTAAATAATAT+GGG | + | chr1.1:48291033-48291052 | None:intergenic | 20.0% |
| !! | TACAATGAATAGAATAGTAA+TGG | + | chr1.1:48291813-48291832 | None:intergenic | 20.0% |
| !! | TGAATCAATAAATATGTACT+CGG | - | chr1.1:48289917-48289936 | MS.gene051473:intron | 20.0% |
| !! | TTAAATTTACTTTACACATG+TGG | + | chr1.1:48291267-48291286 | None:intergenic | 20.0% |
| !! | TTAGAAAGGGATATAAATAA+GGG | - | chr1.1:48290613-48290632 | MS.gene051473:CDS | 20.0% |
| !!! | CTTTTTGTACATTATTATCA+TGG | - | chr1.1:48291485-48291504 | MS.gene051473:intron | 20.0% |
| !!! | TTTTTATTAGCTTTTAACCA+AGG | + | chr1.1:48290977-48290996 | None:intergenic | 20.0% |
| ! | AAATAAGGGAAAATCAGATT+AGG | - | chr1.1:48290627-48290646 | MS.gene051473:CDS | 25.0% |
| ! | AATATTTGGATAAGATGTCT+AGG | - | chr1.1:48291589-48291608 | MS.gene051473:intron | 25.0% |
| ! | AATTAGCTGAAAATGTAGTT+TGG | + | chr1.1:48290026-48290045 | None:intergenic | 25.0% |
| ! | ACATATCCTTCATATATATC+TGG | + | chr1.1:48291552-48291571 | None:intergenic | 25.0% |
| ! | ACCAAAAGTAAATAATATGG+GGG | + | chr1.1:48291031-48291050 | None:intergenic | 25.0% |
| ! | ATTACAGTTATATGACTTTG+TGG | - | chr1.1:48291167-48291186 | MS.gene051473:intron | 25.0% |
| ! | ATTAGAAAGTTCATTTCTCT+TGG | - | chr1.1:48290806-48290825 | MS.gene051473:intron | 25.0% |
| ! | GGAAATATAGAAGATACTAA+GGG | - | chr1.1:48290220-48290239 | MS.gene051473:intron | 25.0% |
| ! | TAATCTGTTTAACAATACAG+TGG | + | chr1.1:48291151-48291170 | None:intergenic | 25.0% |
| ! | TGGAAATATAGAAGATACTA+AGG | - | chr1.1:48290219-48290238 | MS.gene051473:intron | 25.0% |
| !! | AAATACTAAAACAGAGTGTT+TGG | + | chr1.1:48290506-48290525 | None:intergenic | 25.0% |
| !! | AATCAGAATTTTACATGTTC+AGG | - | chr1.1:48289713-48289732 | MS.gene051473:intron | 25.0% |
| !! | CTTTCTTTTTGAATGAAACT+AGG | - | chr1.1:48291687-48291706 | MS.gene051473:CDS | 25.0% |
| !!! | TACTTTCAGAAGTATCATAA+TGG | + | chr1.1:48289448-48289467 | None:intergenic | 25.0% |
| AAACTAACCCATCTAACTAA+TGG | + | chr1.1:48290582-48290601 | None:intergenic | 30.0% | |
| AAAGGAGATCTATCATAAAG+TGG | - | chr1.1:48290687-48290706 | MS.gene051473:intron | 30.0% | |
| AACAATACAGTGGCTTAATT+TGG | + | chr1.1:48291141-48291160 | None:intergenic | 30.0% | |
| AACACAGTGAAAAAGTTGTT+TGG | + | chr1.1:48289966-48289985 | None:intergenic | 30.0% | |
| AAGGAGATCTATCATAAAGT+GGG | - | chr1.1:48290688-48290707 | MS.gene051473:intron | 30.0% | |
| AATTTACTTTACACATGTGG+AGG | + | chr1.1:48291264-48291283 | None:intergenic | 30.0% | |
| ATAATTCAGGCACAATTGAA+AGG | + | chr1.1:48291914-48291933 | None:intergenic | 30.0% | |
| ATCCATTGGATGATGAAATT+GGG | - | chr1.1:48289837-48289856 | MS.gene051473:intron | 30.0% | |
| ATTGATTGAGAGTAGTAGAA+AGG | + | chr1.1:48290738-48290757 | None:intergenic | 30.0% | |
| GACATAATTCAACATGATAC+TGG | - | chr1.1:48289392-48289411 | MS.gene051473:CDS | 30.0% | |
| GGAGAAGGAAAATATAATTC+AGG | + | chr1.1:48291927-48291946 | None:intergenic | 30.0% | |
| GGTACAAAATAGCAATGAAA+AGG | + | chr1.1:48289945-48289964 | None:intergenic | 30.0% | |
| TAGCACATTCCAAAAATCAA+TGG | - | chr1.1:48290874-48290893 | MS.gene051473:intron | 30.0% | |
| TATCCATTGGATGATGAAAT+TGG | - | chr1.1:48289836-48289855 | MS.gene051473:intron | 30.0% | |
| TCTCATCCAGATATATATGA+AGG | - | chr1.1:48291543-48291562 | MS.gene051473:intron | 30.0% | |
| TTGTTAGAGAGGATTAGAAA+GGG | - | chr1.1:48290600-48290619 | MS.gene051473:CDS | 30.0% | |
| TTTATTCTCTTTCTCCAGTA+TGG | - | chr1.1:48292060-48292079 | MS.gene051473:CDS | 30.0% | |
| TTTGTTAGAGAGGATTAGAA+AGG | - | chr1.1:48290599-48290618 | MS.gene051473:CDS | 30.0% | |
| ! | ATTCGTGATGACTTCTTTTA+AGG | - | chr1.1:48292092-48292111 | MS.gene051473:CDS | 30.0% |
| ! | CTTTAGCAAAACTTTTGTCT+TGG | - | chr1.1:48291855-48291874 | MS.gene051473:intron | 30.0% |
| ! | TCATTTTCAATGAATTGTGC+AGG | + | chr1.1:48290365-48290384 | None:intergenic | 30.0% |
| ! | TCCCCCATATTATTTACTTT+TGG | - | chr1.1:48291027-48291046 | MS.gene051473:intron | 30.0% |
| ! | TCGTTATATGTCTTTTATGG+TGG | - | chr1.1:48290533-48290552 | MS.gene051473:intron | 30.0% |
| ! | TTTCAAAGCATTTATTCCTG+TGG | - | chr1.1:48290102-48290121 | MS.gene051473:CDS | 30.0% |
| ! | TTTTCTTCATTCTTGCACAA+CGG | - | chr1.1:48290475-48290494 | MS.gene051473:intron | 30.0% |
| ! | TTTTTGAATGAAACTAGGAG+TGG | - | chr1.1:48291692-48291711 | MS.gene051473:CDS | 30.0% |
| !! | GTGTCGTTATATGTCTTTTA+TGG | - | chr1.1:48290530-48290549 | MS.gene051473:intron | 30.0% |
| !!! | GGAATTTCTCCATTGATTTT+TGG | + | chr1.1:48290886-48290905 | None:intergenic | 30.0% |
| AACCAAGAAGCTAAACTTAC+AGG | + | chr1.1:48289890-48289909 | None:intergenic | 35.0% | |
| AAGAAGCTGCATTCTTTCAT+TGG | + | chr1.1:48290148-48290167 | None:intergenic | 35.0% | |
| AAGCAACATCAGATCATGAA+AGG | - | chr1.1:48290917-48290936 | MS.gene051473:intron | 35.0% | |
| AGAAGCTAAACTTACAGGAA+TGG | + | chr1.1:48289885-48289904 | None:intergenic | 35.0% | |
| ATATGAAGGATATGTTCCCA+TGG | - | chr1.1:48291557-48291576 | MS.gene051473:intron | 35.0% | |
| ATTATGTCACCATAGTATCC+AGG | + | chr1.1:48289380-48289399 | None:intergenic | 35.0% | |
| CATGTGGAGGAACAAAAATT+TGG | + | chr1.1:48291251-48291270 | None:intergenic | 35.0% | |
| CTATGATAAATCCTCACTTC+AGG | + | chr1.1:48292189-48292208 | None:intergenic | 35.0% | |
| GAAGCTAAACTTACAGGAAT+GGG | + | chr1.1:48289884-48289903 | None:intergenic | 35.0% | |
| GCTTCTTGACAATTATCCAT+TGG | - | chr1.1:48289823-48289842 | MS.gene051473:intron | 35.0% | |
| GGTATTAGTCACAAGTGAAA+AGG | + | chr1.1:48292031-48292050 | None:intergenic | 35.0% | |
| GGTTAGACCATTAGTTAGAT+GGG | - | chr1.1:48290572-48290591 | MS.gene051473:intron | 35.0% | |
| GTCATAAGCATATTGTTCCT+TGG | - | chr1.1:48290957-48290976 | MS.gene051473:intron | 35.0% | |
| GTGTTATGCCAATCATATGA+AGG | + | chr1.1:48289590-48289609 | None:intergenic | 35.0% | |
| TAACTAATGGTCTAACCAAC+TGG | + | chr1.1:48290569-48290588 | None:intergenic | 35.0% | |
| TAAGGGAAAATCAGATTAGG+AGG | - | chr1.1:48290630-48290649 | MS.gene051473:CDS | 35.0% | |
| TCATTGGTGTGAATGAAGAT+TGG | + | chr1.1:48290132-48290151 | None:intergenic | 35.0% | |
| TGGTTAGACCATTAGTTAGA+TGG | - | chr1.1:48290571-48290590 | MS.gene051473:intron | 35.0% | |
| TTGAAGAATCCGACAGAAAA+TGG | + | chr1.1:48291948-48291967 | None:intergenic | 35.0% | |
| TTTGTGGAGCATAAAGTACA+AGG | - | chr1.1:48291183-48291202 | MS.gene051473:intron | 35.0% | |
| ! | AAAAGGAGGTAAGGTTTTCT+TGG | - | chr1.1:48292155-48292174 | MS.gene051473:CDS | 35.0% |
| ! | AAGAAAACCTTACCTCCTTT+TGG | + | chr1.1:48292156-48292175 | None:intergenic | 35.0% |
| ! | GATGTTGCTTCATCAATAGA+TGG | + | chr1.1:48290907-48290926 | None:intergenic | 35.0% |
| ! | TTCCTGTAAGTTTAGCTTCT+TGG | - | chr1.1:48289885-48289904 | MS.gene051473:intron | 35.0% |
| ! | TTTCCTTCTCCATTTTCTGT+CGG | - | chr1.1:48291936-48291955 | MS.gene051473:CDS | 35.0% |
| !! | TGATACAGAGTGGTCATTTT+TGG | - | chr1.1:48290185-48290204 | MS.gene051473:intron | 35.0% |
| !!! | AGTTTTGAGAAACCAAAAGG+AGG | - | chr1.1:48292141-48292160 | MS.gene051473:CDS | 35.0% |
| !!! | CCTAGTTTTGAGAAACCAAA+AGG | - | chr1.1:48292138-48292157 | MS.gene051473:CDS | 35.0% |
| !!! | CCTTTTGGTTTCTCAAAACT+AGG | + | chr1.1:48292141-48292160 | None:intergenic | 35.0% |
| AACAAATGCCACCTTGTCTT+CGG | + | chr1.1:48290396-48290415 | None:intergenic | 40.0% | |
| AATCCGACAGAAAATGGAGA+AGG | + | chr1.1:48291942-48291961 | None:intergenic | 40.0% | |
| ACAACTGATCAGATAACGCA+CGG | + | chr1.1:48291367-48291386 | None:intergenic | 40.0% | |
| AGCATTCAGATGTTGTTCAG+TGG | - | chr1.1:48289318-48289337 | MS.gene051473:CDS | 40.0% | |
| ATCAGATCATGAAAGGCTTC+TGG | - | chr1.1:48290924-48290943 | MS.gene051473:intron | 40.0% | |
| ATCATAAAGTGGGAACCCTT+GGG | - | chr1.1:48290698-48290717 | MS.gene051473:intron | 40.0% | |
| ATGAAACTAGGAGTGGTGAA+TGG | - | chr1.1:48291699-48291718 | MS.gene051473:CDS | 40.0% | |
| ATGATGAGCTATTGTTCAGG+AGG | - | chr1.1:48289614-48289633 | MS.gene051473:intron | 40.0% | |
| CATATGAAGGCTCAGAAGTA+TGG | + | chr1.1:48289577-48289596 | None:intergenic | 40.0% | |
| CATTCAGATGTTGTTCAGTG+GGG | - | chr1.1:48289320-48289339 | MS.gene051473:CDS | 40.0% | |
| CATTGGATGATGAAATTGGG+AGG | - | chr1.1:48289840-48289859 | MS.gene051473:intron | 40.0% | |
| CCTGAACAATAGCTCATCAT+CGG | + | chr1.1:48289614-48289633 | None:intergenic | 40.0% | |
| CTCCCAATTTCATCATCCAA+TGG | + | chr1.1:48289842-48289861 | None:intergenic | 40.0% | |
| CTTCTGAGCCTTCATATGAT+TGG | - | chr1.1:48289579-48289598 | MS.gene051473:intron | 40.0% | |
| GAGCATAAAGTACAAGGTGA+TGG | - | chr1.1:48291189-48291208 | MS.gene051473:intron | 40.0% | |
| GCATTCAGATGTTGTTCAGT+GGG | - | chr1.1:48289319-48289338 | MS.gene051473:CDS | 40.0% | |
| GGTCATGATTATGCACATGA+AGG | - | chr1.1:48289734-48289753 | MS.gene051473:intron | 40.0% | |
| TAGTATCCAGGACTAAAACG+AGG | + | chr1.1:48289368-48289387 | None:intergenic | 40.0% | |
| TATCATAAAGTGGGAACCCT+TGG | - | chr1.1:48290697-48290716 | MS.gene051473:intron | 40.0% | |
| TGAAACTAGGAGTGGTGAAT+GGG | - | chr1.1:48291700-48291719 | MS.gene051473:CDS | 40.0% | |
| TGAGAAACCAAAAGGAGGTA+AGG | - | chr1.1:48292146-48292165 | MS.gene051473:CDS | 40.0% | |
| TGATCTCGTCATTCTCTACT+TGG | + | chr1.1:48289472-48289491 | None:intergenic | 40.0% | |
| TGTAGTCCTAGTGAAGTAGA+GGG | - | chr1.1:48289788-48289807 | MS.gene051473:CDS | 40.0% | |
| TTGTAGTCCTAGTGAAGTAG+AGG | - | chr1.1:48289787-48289806 | MS.gene051473:CDS | 40.0% | |
| ! | ACAAGGTGATGGTAATTGTC+AGG | - | chr1.1:48291200-48291219 | MS.gene051473:intron | 40.0% |
| ! | CTTTTCGTCTCACAAACTTG+TGG | + | chr1.1:48291406-48291425 | None:intergenic | 40.0% |
| ! | TGAGCGTTCAAGTTATTCAC+AGG | - | chr1.1:48289535-48289554 | MS.gene051473:intron | 40.0% |
| !! | AACCAGGTTTGTTGTCTAGT+GGG | - | chr1.1:48291431-48291450 | MS.gene051473:intron | 40.0% |
| !! | AATGAAGATTGGTTTGCCAC+AGG | + | chr1.1:48290121-48290140 | None:intergenic | 40.0% |
| !! | CGTTTTAGTCCTGGATACTA+TGG | - | chr1.1:48289368-48289387 | MS.gene051473:CDS | 40.0% |
| !! | GATGGGTTAGTTTGTTAGAG+AGG | - | chr1.1:48290589-48290608 | MS.gene051473:CDS | 40.0% |
| !!! | ACAGAGTGGTCATTTTTGGA+GGG | - | chr1.1:48290189-48290208 | MS.gene051473:intron | 40.0% |
| !!! | TACAGAGTGGTCATTTTTGG+AGG | - | chr1.1:48290188-48290207 | MS.gene051473:intron | 40.0% |
| AACCCACTAGACAACAAACC+TGG | + | chr1.1:48291436-48291455 | None:intergenic | 45.0% | |
| ATGACCACTCTGTATCAGAG+TGG | + | chr1.1:48290182-48290201 | None:intergenic | 45.0% | |
| CCGATGATGAGCTATTGTTC+AGG | - | chr1.1:48289611-48289630 | MS.gene051473:intron | 45.0% | |
| CGAATATCCTCACACCATAC+TGG | + | chr1.1:48292077-48292096 | None:intergenic | 45.0% | |
| CTCACAAACTTGTGGTGATC+AGG | + | chr1.1:48291398-48291417 | None:intergenic | 45.0% | |
| GAAACTAGGAGTGGTGAATG+GGG | - | chr1.1:48291701-48291720 | MS.gene051473:CDS | 45.0% | |
| GAGACGAAAAGTTGTGAACC+AGG | - | chr1.1:48291415-48291434 | MS.gene051473:intron | 45.0% | |
| GAGAGTAGTAGAAAGGTCAG+AGG | + | chr1.1:48290731-48290750 | None:intergenic | 45.0% | |
| GTGTGCACACACATACATCA+TGG | + | chr1.1:48291005-48291024 | None:intergenic | 45.0% | |
| TCATAAAGTGGGAACCCTTG+GGG | - | chr1.1:48290699-48290718 | MS.gene051473:intron | 45.0% | |
| TCTTCCACTCTGATACAGAG+TGG | - | chr1.1:48290175-48290194 | MS.gene051473:intron | 45.0% | |
| TCTTTCTCCAGTATGGTGTG+AGG | - | chr1.1:48292067-48292086 | MS.gene051473:CDS | 45.0% | |
| TGAAGTAGAGGGAGTCTCAT+CGG | - | chr1.1:48289799-48289818 | MS.gene051473:CDS | 45.0% | |
| TGAGAAACATGCCGAAGACA+AGG | - | chr1.1:48290382-48290401 | MS.gene051473:intron | 45.0% | |
| ! | ATCATGAAAGGCTTCTGGAG+AGG | - | chr1.1:48290929-48290948 | MS.gene051473:intron | 45.0% |
| !! | GAACCAGGTTTGTTGTCTAG+TGG | - | chr1.1:48291430-48291449 | MS.gene051473:intron | 45.0% |
| !! | GCTATTGTTCAGGAGGTATC+TGG | - | chr1.1:48289621-48289640 | MS.gene051473:intron | 45.0% |
| !!! | AGAGTGGTCATTTTTGGAGG+GGG | - | chr1.1:48290191-48290210 | MS.gene051473:intron | 45.0% |
| !!! | CAGAGTGGTCATTTTTGGAG+GGG | - | chr1.1:48290190-48290209 | MS.gene051473:intron | 45.0% |
| GAAACATGCCGAAGACAAGG+TGG | - | chr1.1:48290385-48290404 | MS.gene051473:intron | 50.0% | |
| GAGACTCCCTCTACTTCACT+AGG | + | chr1.1:48289797-48289816 | None:intergenic | 50.0% | |
| GGTGGTTCATTTCTGCCAGT+TGG | - | chr1.1:48290551-48290570 | MS.gene051473:intron | 50.0% | |
| TCATGTGACCCTTCAAGCTG+CGG | - | chr1.1:48291727-48291746 | MS.gene051473:CDS | 50.0% | |
| ! | TGGTAGTGAGACCTGAAGTG+AGG | - | chr1.1:48292175-48292194 | MS.gene051473:CDS | 50.0% |
| !! | GTCGATCCTCGTTTTAGTCC+TGG | - | chr1.1:48289359-48289378 | MS.gene051473:CDS | 50.0% |
| CCTTCAAGCTGCGGCAGATT+CGG | - | chr1.1:48291736-48291755 | MS.gene051473:CDS | 55.0% | |
| CGAATCTGCCGCAGCTTGAA+GGG | + | chr1.1:48291738-48291757 | None:intergenic | 55.0% | |
| !! | CATTTTTGGAGGGGGTGGAG+TGG | - | chr1.1:48290199-48290218 | MS.gene051473:intron | 55.0% |
| !!! | GTGGTCATTTTTGGAGGGGG+TGG | - | chr1.1:48290194-48290213 | MS.gene051473:intron | 55.0% |
| CCGAATCTGCCGCAGCTTGA+AGG | + | chr1.1:48291739-48291758 | None:intergenic | 60.0% | |
| GTCAGAGGTCTCTGCCCCAA+GGG | + | chr1.1:48290716-48290735 | None:intergenic | 60.0% | |
| GGTCAGAGGTCTCTGCCCCA+AGG | + | chr1.1:48290717-48290736 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 48289305 | 48292233 | 48289305 | ID=MS.gene051473 |
| chr1.1 | mRNA | 48289305 | 48292233 | 48289305 | ID=MS.gene051473.t1;Parent=MS.gene051473 |
| chr1.1 | exon | 48291903 | 48292233 | 48291903 | ID=MS.gene051473.t1.exon1;Parent=MS.gene051473.t1 |
| chr1.1 | CDS | 48291903 | 48292233 | 48291903 | ID=cds.MS.gene051473.t1;Parent=MS.gene051473.t1 |
| chr1.1 | exon | 48291649 | 48291803 | 48291649 | ID=MS.gene051473.t1.exon2;Parent=MS.gene051473.t1 |
| chr1.1 | CDS | 48291649 | 48291803 | 48291649 | ID=cds.MS.gene051473.t1;Parent=MS.gene051473.t1 |
| chr1.1 | exon | 48290588 | 48290661 | 48290588 | ID=MS.gene051473.t1.exon3;Parent=MS.gene051473.t1 |
| chr1.1 | CDS | 48290588 | 48290661 | 48290588 | ID=cds.MS.gene051473.t1;Parent=MS.gene051473.t1 |
| chr1.1 | exon | 48290317 | 48290371 | 48290317 | ID=MS.gene051473.t1.exon4;Parent=MS.gene051473.t1 |
| chr1.1 | CDS | 48290317 | 48290371 | 48290317 | ID=cds.MS.gene051473.t1;Parent=MS.gene051473.t1 |
| chr1.1 | exon | 48290102 | 48290176 | 48290102 | ID=MS.gene051473.t1.exon5;Parent=MS.gene051473.t1 |
| chr1.1 | CDS | 48290102 | 48290176 | 48290102 | ID=cds.MS.gene051473.t1;Parent=MS.gene051473.t1 |
| chr1.1 | exon | 48289928 | 48290001 | 48289928 | ID=MS.gene051473.t1.exon6;Parent=MS.gene051473.t1 |
| chr1.1 | CDS | 48289928 | 48290001 | 48289928 | ID=cds.MS.gene051473.t1;Parent=MS.gene051473.t1 |
| chr1.1 | exon | 48289781 | 48289829 | 48289781 | ID=MS.gene051473.t1.exon7;Parent=MS.gene051473.t1 |
| chr1.1 | CDS | 48289781 | 48289829 | 48289781 | ID=cds.MS.gene051473.t1;Parent=MS.gene051473.t1 |
| chr1.1 | exon | 48289305 | 48289460 | 48289305 | ID=MS.gene051473.t1.exon8;Parent=MS.gene051473.t1 |
| chr1.1 | CDS | 48289305 | 48289460 | 48289305 | ID=cds.MS.gene051473.t1;Parent=MS.gene051473.t1 |
| Gene Sequence |
| Protein sequence |
