Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051572.t1 | XP_003588960.2 | 98.7 | 384 | 5 | 0 | 1 | 384 | 9 | 392 | 7.70E-215 | 756.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051572.t1 | O04278 | 97.7 | 384 | 9 | 0 | 1 | 384 | 1 | 384 | 7.8e-216 | 750.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051572.t1 | G7I9V0 | 98.7 | 384 | 5 | 0 | 1 | 384 | 9 | 392 | 5.6e-215 | 756.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051572 | MS.gene20191 | 0.810944 | 8.96E-51 | -1.69E-46 |
| MS.gene051572 | MS.gene26380 | 0.800792 | 1.22E-48 | -1.69E-46 |
| MS.gene051572 | MS.gene27594 | 0.828131 | 1.07E-54 | -1.69E-46 |
| MS.gene051572 | MS.gene42411 | 0.806302 | 8.79E-50 | -1.69E-46 |
| MS.gene051572 | MS.gene49714 | 0.820444 | 6.84E-53 | -1.69E-46 |
| MS.gene051572 | MS.gene63991 | 0.80132 | 9.52E-49 | -1.69E-46 |
| MS.gene051572 | MS.gene68106 | 0.801273 | 9.73E-49 | -1.69E-46 |
| MS.gene051572 | MS.gene89248 | 0.803293 | 3.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051572.t1 | MTR_1g015750 | 98.698 | 384 | 5 | 0 | 1 | 384 | 1 | 384 | 0.0 | 783 |
| MS.gene051572.t1 | MTR_1g015750 | 98.698 | 384 | 5 | 0 | 1 | 384 | 9 | 392 | 0.0 | 782 |
| MS.gene051572.t1 | MTR_1g015750 | 98.566 | 279 | 4 | 0 | 1 | 279 | 1 | 279 | 0.0 | 570 |
| MS.gene051572.t1 | MTR_3g105240 | 64.368 | 174 | 50 | 3 | 108 | 276 | 58 | 224 | 1.55e-73 | 229 |
| MS.gene051572.t1 | MTR_5g027970 | 33.249 | 394 | 203 | 13 | 36 | 374 | 422 | 810 | 3.47e-52 | 186 |
| MS.gene051572.t1 | MTR_6g071360 | 30.026 | 383 | 216 | 11 | 39 | 374 | 471 | 848 | 7.51e-48 | 174 |
| MS.gene051572.t1 | MTR_8g079010 | 30.273 | 403 | 212 | 14 | 39 | 374 | 375 | 775 | 1.40e-43 | 161 |
| MS.gene051572.t1 | MTR_5g018510 | 32.602 | 319 | 172 | 9 | 39 | 314 | 497 | 815 | 1.63e-42 | 159 |
| MS.gene051572.t1 | MTR_5g018510 | 33.019 | 318 | 171 | 10 | 39 | 314 | 497 | 814 | 2.91e-42 | 158 |
| MS.gene051572.t1 | MTR_1g034300 | 28.272 | 382 | 209 | 11 | 37 | 353 | 459 | 840 | 1.36e-39 | 150 |
| MS.gene051572.t1 | MTR_1g034300 | 28.198 | 383 | 209 | 11 | 37 | 353 | 459 | 841 | 1.89e-39 | 150 |
| MS.gene051572.t1 | MTR_5g027970 | 31.928 | 166 | 84 | 4 | 36 | 172 | 422 | 587 | 4.08e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051572.t1 | AT2G26300 | 86.458 | 384 | 51 | 1 | 1 | 384 | 1 | 383 | 0.0 | 693 |
| MS.gene051572.t1 | AT2G26300 | 86.458 | 384 | 51 | 1 | 1 | 384 | 1 | 383 | 0.0 | 693 |
| MS.gene051572.t1 | AT1G31930 | 32.995 | 394 | 203 | 12 | 37 | 374 | 428 | 816 | 1.96e-54 | 192 |
| MS.gene051572.t1 | AT1G31930 | 32.995 | 394 | 203 | 12 | 37 | 374 | 428 | 816 | 1.96e-54 | 192 |
| MS.gene051572.t1 | AT1G31930 | 32.995 | 394 | 203 | 12 | 37 | 374 | 428 | 816 | 1.96e-54 | 192 |
| MS.gene051572.t1 | AT1G31930 | 32.995 | 394 | 203 | 12 | 37 | 374 | 428 | 816 | 1.96e-54 | 192 |
| MS.gene051572.t1 | AT1G31930 | 32.995 | 394 | 203 | 12 | 37 | 374 | 428 | 816 | 1.96e-54 | 192 |
| MS.gene051572.t1 | AT1G31930 | 32.995 | 394 | 203 | 12 | 37 | 374 | 428 | 816 | 1.96e-54 | 192 |
| MS.gene051572.t1 | AT2G23460 | 29.977 | 427 | 237 | 14 | 3 | 374 | 444 | 863 | 8.48e-43 | 160 |
| MS.gene051572.t1 | AT4G34390 | 28.024 | 339 | 205 | 9 | 36 | 336 | 459 | 796 | 2.03e-33 | 132 |
| MS.gene051572.t1 | AT4G34390 | 27.864 | 323 | 187 | 9 | 36 | 336 | 459 | 757 | 1.29e-30 | 124 |
Find 66 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGAAAAGTTATCAGAAAT+TGG | 0.258807 | 1.3:+6428222 | MS.gene051572:CDS |
| CGCTATCCGGAGCAGTGTTC+TGG | 0.283333 | 1.3:-6431986 | None:intergenic |
| TGTTATATCCAGTGAAAATA+AGG | 0.321185 | 1.3:+6428022 | MS.gene051572:CDS |
| GTGGAAGGATGCTGCAATTC+AGG | 0.324847 | 1.3:+6428302 | MS.gene051572:CDS |
| ATGTCTTCTTCACAACCTTC+TGG | 0.325401 | 1.3:-6432049 | None:intergenic |
| AGATTGTACCCATTATTTCA+TGG | 0.342997 | 1.3:+6428475 | MS.gene051572:CDS |
| ATGTTCAATCTCTTGTTTCC+CGG | 0.350590 | 1.3:-6431145 | None:intergenic |
| TCTTACCTGCTTAAATATAG+TGG | 0.358453 | 1.3:-6427617 | None:intergenic |
| ATTTCCTCCTCTCATTTCTC+TGG | 0.370893 | 1.3:-6430337 | None:intergenic |
| CCTCAAAACATTGTTGCTTC+AGG | 0.378528 | 1.3:-6430792 | None:intergenic |
| AGAGAAATGAGAGGAGGAAA+TGG | 0.403104 | 1.3:+6430339 | MS.gene051572:CDS |
| GACTACCAGCCACTTTCAAC+CGG | 0.403399 | 1.3:+6431126 | MS.gene051572:CDS |
| ATGAAATAATGGGTACAATC+TGG | 0.415906 | 1.3:-6428473 | None:intergenic |
| TGCAAGTTCCTTAGTGAGAC+GGG | 0.426903 | 1.3:-6428262 | None:intergenic |
| CATATTTGAGAAGAAGATCC+TGG | 0.428496 | 1.3:+6430991 | MS.gene051572:CDS |
| TTTCTACAGTTACTTCATGA+TGG | 0.431110 | 1.3:+6427957 | MS.gene051572:intron |
| TAAATCTTGGATACCTTTGT+TGG | 0.446321 | 1.3:-6428533 | None:intergenic |
| GAGACGGAGGAATCTCTTTG+AGG | 0.457860 | 1.3:+6432094 | MS.gene051572:CDS |
| CGGAGGAATCTCTTTGAGGC+TGG | 0.474033 | 1.3:+6432098 | MS.gene051572:CDS |
| CAGTGTTGGCATCATTATAA+CGG | 0.475539 | 1.3:-6426367 | None:intergenic |
| AATGGGTACAATCTGGAACT+TGG | 0.478299 | 1.3:-6428466 | None:intergenic |
| AACACGCGGTCTACGCTATC+CGG | 0.486792 | 1.3:-6431999 | None:intergenic |
| GTTTCCCGGTTGAAAGTGGC+TGG | 0.493695 | 1.3:-6431131 | None:intergenic |
| GTGTTGTAGAGATTCAGTTC+AGG | 0.503046 | 1.3:+6429092 | MS.gene051572:CDS |
| ACCGCGTGTTTAAGATATAT+AGG | 0.512353 | 1.3:+6432012 | MS.gene051572:CDS |
| AAATGGATCCATCTGTTTGA+AGG | 0.514605 | 1.3:+6430356 | MS.gene051572:CDS |
| TGAAAACAAGAACAGAATGA+TGG | 0.514701 | 1.3:+6430744 | MS.gene051572:CDS |
| GTGCAAGTTCCTTAGTGAGA+CGG | 0.523593 | 1.3:-6428263 | None:intergenic |
| TCTTGTTTCCCGGTTGAAAG+TGG | 0.524400 | 1.3:-6431135 | None:intergenic |
| AAGAATAGAGTTAGAAACAA+AGG | 0.526659 | 1.3:+6426509 | MS.gene051572:CDS |
| GAAGTCCACTATATTTAAGC+AGG | 0.528141 | 1.3:+6427612 | MS.gene051572:CDS |
| CTTGCAAGAGTTCGTACCAC+TGG | 0.536698 | 1.3:+6429070 | MS.gene051572:CDS |
| CTGAAACTCCTTCAAACAGA+TGG | 0.537712 | 1.3:-6430364 | None:intergenic |
| AGTTATCAGAAATTGGAGGC+AGG | 0.542169 | 1.3:+6428229 | MS.gene051572:CDS |
| AACCACTCACATACATTAAG+CGG | 0.544573 | 1.3:-6431099 | None:intergenic |
| ATTCAGAAACTTCTACTACT+AGG | 0.546573 | 1.3:+6426543 | MS.gene051572:CDS |
| GGAAAATTTGCAGAGGCTGT+CGG | 0.549618 | 1.3:+6428496 | MS.gene051572:CDS |
| ATATTTCCAGAACACTGCTC+CGG | 0.563292 | 1.3:+6431980 | MS.gene051572:CDS |
| GACCACTGCACTTGACCAGA+AGG | 0.565096 | 1.3:+6432034 | MS.gene051572:CDS |
| CACAAGAAATAGAGAGTCTG+TGG | 0.566462 | 1.3:+6428283 | MS.gene051572:CDS |
| AACCTTCTGGTCAAGTGCAG+TGG | 0.574510 | 1.3:-6432036 | None:intergenic |
| GTTGGAGAAAACAAGAAAAG+TGG | 0.574561 | 1.3:+6430284 | MS.gene051572:CDS |
| TAGACATTAGCATGAATGAC+TGG | 0.587415 | 1.3:-6427769 | None:intergenic |
| TGCTAATTATGTTCCAACAA+AGG | 0.590312 | 1.3:+6428520 | MS.gene051572:CDS |
| ACCACTCACATACATTAAGC+GGG | 0.592242 | 1.3:-6431098 | None:intergenic |
| CATTAGCATGAATGACTGGT+AGG | 0.598977 | 1.3:-6427765 | None:intergenic |
| AGAAATAGAGAGTCTGTGGA+AGG | 0.613073 | 1.3:+6428287 | MS.gene051572:CDS |
| ATTTCAAACTGGCTTTGATG+AGG | 0.616068 | 1.3:+6427726 | MS.gene051572:CDS |
| GTCTATAGACTGTTTGATGT+CGG | 0.618439 | 1.3:+6430311 | MS.gene051572:CDS |
| AACTTGGAGCTCATTACCAC+GGG | 0.623746 | 1.3:-6428450 | None:intergenic |
| TTGATGAGACTTTGAGACGG+AGG | 0.624845 | 1.3:+6432081 | MS.gene051572:CDS |
| TTGTTGATGAGACTTTGAGA+CGG | 0.630412 | 1.3:+6432078 | MS.gene051572:CDS |
| ACTACCAGCCACTTTCAACC+GGG | 0.630833 | 1.3:+6431127 | MS.gene051572:CDS |
| CAACACTGAAGAAAATGCAC+AGG | 0.631363 | 1.3:+6426382 | MS.gene051572:CDS |
| TATAGACTGTTTGATGTCGG+TGG | 0.634857 | 1.3:+6430314 | MS.gene051572:CDS |
| GCAAGTTCCTTAGTGAGACG+GGG | 0.646360 | 1.3:-6428261 | None:intergenic |
| ATTTCATGGAAAATTTGCAG+AGG | 0.651354 | 1.3:+6428489 | MS.gene051572:CDS |
| TCCCGCTTAATGTATGTGAG+TGG | 0.652970 | 1.3:+6431097 | MS.gene051572:CDS |
| GAACTTGGAGCTCATTACCA+CGG | 0.660679 | 1.3:-6428451 | None:intergenic |
| GAAAAGTTATCAGAAATTGG+AGG | 0.672048 | 1.3:+6428225 | MS.gene051572:CDS |
| CTGTAGGAAACATATGCCCG+TGG | 0.675146 | 1.3:+6428434 | MS.gene051572:intron |
| CTGAATCTCTACAACACCAG+TGG | 0.677147 | 1.3:-6429086 | None:intergenic |
| GTGGCCAGAGAAATGAGAGG+AGG | 0.687189 | 1.3:+6430333 | MS.gene051572:CDS |
| CAAGTTCCTTAGTGAGACGG+GGG | 0.693310 | 1.3:-6428260 | None:intergenic |
| TCCTATATATCTTAAACACG+CGG | 0.695502 | 1.3:-6432013 | None:intergenic |
| TCGGTGGCCAGAGAAATGAG+AGG | 0.733004 | 1.3:+6430330 | MS.gene051572:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATCAAAAATACATA+TGG | - | chr1.3:6427187-6427206 | None:intergenic | 10.0% |
| !! | ATAGACTATTATAAATCTAA+CGG | - | chr1.3:6430080-6430099 | None:intergenic | 15.0% |
| !! | TATATTTCAAAGTTGTAAAT+AGG | - | chr1.3:6430125-6430144 | None:intergenic | 15.0% |
| !!! | ATAAAACTTTTATTTCAAAC+TGG | + | chr1.3:6427715-6427734 | MS.gene051572:CDS | 15.0% |
| !!! | CAAAATTTTATTTGGAAAAA+TGG | - | chr1.3:6427314-6427333 | None:intergenic | 15.0% |
| !! | AATACTAACAATTACAACAT+CGG | - | chr1.3:6429895-6429914 | None:intergenic | 20.0% |
| !! | ATCATACTAAATCAACTATT+AGG | + | chr1.3:6428696-6428715 | MS.gene051572:intron | 20.0% |
| !! | ATTGTATGAATATATGACTA+CGG | - | chr1.3:6428984-6429003 | None:intergenic | 20.0% |
| !! | CACATATTTAAACTTATCAA+TGG | + | chr1.3:6427560-6427579 | MS.gene051572:intron | 20.0% |
| !! | CATATTAAAATAGAGTCAAA+TGG | - | chr1.3:6430428-6430447 | None:intergenic | 20.0% |
| !! | TAAAGAAAGTGAATAAATGA+CGG | - | chr1.3:6429264-6429283 | None:intergenic | 20.0% |
| !! | TAGACTATTATAAATCTAAC+GGG | - | chr1.3:6430079-6430098 | None:intergenic | 20.0% |
| !! | TCATAAGATATGATAGAAAT+AGG | + | chr1.3:6428913-6428932 | MS.gene051572:intron | 20.0% |
| !! | TCTCAGTTAAAATAAGTTAT+TGG | - | chr1.3:6431736-6431755 | None:intergenic | 20.0% |
| !! | TGTAATTGTTAGTATTATGA+TGG | + | chr1.3:6429899-6429918 | MS.gene051572:intron | 20.0% |
| !! | TTTGGATAAACAACTTAATT+TGG | + | chr1.3:6431242-6431261 | MS.gene051572:intron | 20.0% |
| !!! | AATTTCAAGTTTGACAATAA+GGG | + | chr1.3:6429423-6429442 | MS.gene051572:intron | 20.0% |
| !!! | AATTTTATTTGGAAAAATGG+AGG | - | chr1.3:6427311-6427330 | None:intergenic | 20.0% |
| !!! | ATGTATTTAGAATTCTACAT+GGG | - | chr1.3:6429374-6429393 | None:intergenic | 20.0% |
| !!! | ATTTGTATACTCATGTTTTT+GGG | + | chr1.3:6427372-6427391 | MS.gene051572:intron | 20.0% |
| !!! | CAAATTTTCCATGAAATAAT+GGG | - | chr1.3:6428486-6428505 | None:intergenic | 20.0% |
| !!! | TAACATCTAAGACAATTATA+TGG | + | chr1.3:6430835-6430854 | MS.gene051572:intron | 20.0% |
| !!! | TAATAGTTGATTTAGTATGA+TGG | - | chr1.3:6428697-6428716 | None:intergenic | 20.0% |
| !!! | TAATATAACATAGTCAGTTT+TGG | + | chr1.3:6431535-6431554 | MS.gene051572:intron | 20.0% |
| !!! | TATTTGTATACTCATGTTTT+TGG | + | chr1.3:6427371-6427390 | MS.gene051572:intron | 20.0% |
| !!! | TTTTTTAGTATTGTTGATTG+AGG | + | chr1.3:6427344-6427363 | MS.gene051572:intron | 20.0% |
| ! | AAAGAAAGTGAATAAATGAC+GGG | - | chr1.3:6429263-6429282 | None:intergenic | 25.0% |
| ! | AACAAGTCAAGTACATAATA+AGG | - | chr1.3:6427939-6427958 | None:intergenic | 25.0% |
| ! | AACAATAGTATGCTAAATCT+TGG | - | chr1.3:6428549-6428568 | None:intergenic | 25.0% |
| ! | AAGAAATTGAGAAATACTTC+TGG | + | chr1.3:6428733-6428752 | MS.gene051572:intron | 25.0% |
| ! | AAGAATAGAGTTAGAAACAA+AGG | + | chr1.3:6426509-6426528 | MS.gene051572:CDS | 25.0% |
| ! | AAGCTATTCTGAATAGTTTA+TGG | + | chr1.3:6431370-6431389 | MS.gene051572:intron | 25.0% |
| ! | AATCATGACGTAATTTATCA+TGG | - | chr1.3:6431828-6431847 | None:intergenic | 25.0% |
| ! | ACAGAAAACCTATATACAAT+TGG | - | chr1.3:6428104-6428123 | None:intergenic | 25.0% |
| ! | AGACTATTATAAATCTAACG+GGG | - | chr1.3:6430078-6430097 | None:intergenic | 25.0% |
| ! | AGTAACTTATTTATAGCCTT+AGG | + | chr1.3:6431179-6431198 | MS.gene051572:intron | 25.0% |
| ! | ATATCAAGAAGAGATCAAAA+TGG | - | chr1.3:6429190-6429209 | None:intergenic | 25.0% |
| ! | ATTATATGGAAAGTTTCCTA+TGG | + | chr1.3:6430849-6430868 | MS.gene051572:intron | 25.0% |
| ! | CATTGGACTTAATTTCTTAT+TGG | - | chr1.3:6428860-6428879 | None:intergenic | 25.0% |
| ! | CTAATTCAATCCTACTAAAT+CGG | - | chr1.3:6426794-6426813 | None:intergenic | 25.0% |
| ! | CTGCAATGTATTATATAAGT+GGG | + | chr1.3:6426950-6426969 | MS.gene051572:intron | 25.0% |
| ! | GTTTGTGAAGAAAAAATTTG+AGG | + | chr1.3:6431953-6431972 | MS.gene051572:CDS | 25.0% |
| ! | TAAGAAATTAAGTCCAATGT+TGG | + | chr1.3:6428861-6428880 | MS.gene051572:intron | 25.0% |
| ! | TGTTATATCCAGTGAAAATA+AGG | + | chr1.3:6428022-6428041 | MS.gene051572:CDS | 25.0% |
| ! | TTCACTAACAGTTAAGATTT+CGG | + | chr1.3:6430902-6430921 | MS.gene051572:intron | 25.0% |
| ! | TTCTTGATATGCTTATTACT+CGG | + | chr1.3:6429200-6429219 | MS.gene051572:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr1.3:6431241-6431260 | None:intergenic | 25.0% |
| !! | CATGTATTTAGAATTCTACA+TGG | - | chr1.3:6429375-6429394 | None:intergenic | 25.0% |
| !! | CCAAAAGAAAAACTTTTAAC+TGG | - | chr1.3:6430540-6430559 | None:intergenic | 25.0% |
| !! | CCAGTTAAAAGTTTTTCTTT+TGG | + | chr1.3:6430537-6430556 | MS.gene051572:intron | 25.0% |
| !! | CTCATCTGCAAAATTTTATT+TGG | - | chr1.3:6427322-6427341 | None:intergenic | 25.0% |
| !! | GAATTTGAAGTTTATGATTC+AGG | + | chr1.3:6429622-6429641 | MS.gene051572:intron | 25.0% |
| !! | GCAAATTTTCCATGAAATAA+TGG | - | chr1.3:6428487-6428506 | None:intergenic | 25.0% |
| !! | TACTACTAGGTACATTTTAT+TGG | + | chr1.3:6426556-6426575 | MS.gene051572:intron | 25.0% |
| !! | TGTTTAAGATTAAGGTTGAT+GGG | + | chr1.3:6429591-6429610 | MS.gene051572:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr1.3:6431240-6431259 | None:intergenic | 25.0% |
| !!! | AATAGGAATAAGAGTATTAG+AGG | + | chr1.3:6428930-6428949 | MS.gene051572:intron | 25.0% |
| !!! | ATAGGAATAAGAGTATTAGA+GGG | + | chr1.3:6428931-6428950 | MS.gene051572:intron | 25.0% |
| !!! | GAAAGTGCTATATTTGATTA+AGG | + | chr1.3:6426453-6426472 | MS.gene051572:intron | 25.0% |
| !!! | GAATTTCAAGTTTGACAATA+AGG | + | chr1.3:6429422-6429441 | MS.gene051572:intron | 25.0% |
| !!! | TAAGGTGTTTTACTATACTA+TGG | + | chr1.3:6427122-6427141 | MS.gene051572:intron | 25.0% |
| !!! | TTTAACCTTTTGATTTGTTG+CGG | - | chr1.3:6430513-6430532 | None:intergenic | 25.0% |
| AAAAGCAGACAAATGAAAAC+AGG | - | chr1.3:6428602-6428621 | None:intergenic | 30.0% | |
| AAATTGCATAACAGATTGAC+AGG | - | chr1.3:6429035-6429054 | None:intergenic | 30.0% | |
| AACAATTATGTTGTTGTGCA+AGG | - | chr1.3:6430239-6430258 | None:intergenic | 30.0% | |
| AATCTTAAACACACGACAAA+AGG | - | chr1.3:6429582-6429601 | None:intergenic | 30.0% | |
| AATTCTCATCTTTCCAACAT+TGG | - | chr1.3:6428877-6428896 | None:intergenic | 30.0% | |
| ACAATTATGTTGTTGTGCAA+GGG | - | chr1.3:6430238-6430257 | None:intergenic | 30.0% | |
| ACTATTAGGTTCAAGCATAA+TGG | + | chr1.3:6428710-6428729 | MS.gene051572:intron | 30.0% | |
| AGATTGTACCCATTATTTCA+TGG | + | chr1.3:6428475-6428494 | MS.gene051572:CDS | 30.0% | |
| ATACATTGTAGATTCCAACA+TGG | - | chr1.3:6426650-6426669 | None:intergenic | 30.0% | |
| ATGAGTATGCAATTATTTGC+AGG | - | chr1.3:6427477-6427496 | None:intergenic | 30.0% | |
| ATTCAGAAACTTCTACTACT+AGG | + | chr1.3:6426543-6426562 | MS.gene051572:CDS | 30.0% | |
| ATTTATAACAAGAGTGACAC+CGG | - | chr1.3:6430004-6430023 | None:intergenic | 30.0% | |
| ATTTCATATCGAAAGTTCCA+TGG | + | chr1.3:6428655-6428674 | MS.gene051572:intron | 30.0% | |
| ATTTCATGCCAGTACTTTAA+GGG | + | chr1.3:6430593-6430612 | MS.gene051572:intron | 30.0% | |
| ATTTCATGGAAAATTTGCAG+AGG | + | chr1.3:6428489-6428508 | MS.gene051572:CDS | 30.0% | |
| CAAACTTGAAATTCGTAAGT+CGG | - | chr1.3:6429416-6429435 | None:intergenic | 30.0% | |
| CCACTTATATAATACATTGC+AGG | - | chr1.3:6426952-6426971 | None:intergenic | 30.0% | |
| CCTGCAATGTATTATATAAG+TGG | + | chr1.3:6426949-6426968 | MS.gene051572:intron | 30.0% | |
| CGAAAAATCAACATCATTCT+GGG | - | chr1.3:6427997-6428016 | None:intergenic | 30.0% | |
| CGATTTAGTAGGATTGAATT+AGG | + | chr1.3:6426792-6426811 | MS.gene051572:intron | 30.0% | |
| CTTGTTCAAAAATAGCATGA+AGG | - | chr1.3:6430966-6430985 | None:intergenic | 30.0% | |
| GAAAAGTTATCAGAAATTGG+AGG | + | chr1.3:6428225-6428244 | MS.gene051572:CDS | 30.0% | |
| GATCTAACATACTTAAACCA+TGG | - | chr1.3:6428675-6428694 | None:intergenic | 30.0% | |
| GGGAAATAAAGTAATACCAA+AGG | - | chr1.3:6429243-6429262 | None:intergenic | 30.0% | |
| GGTGTAAATTGTGATAGAAA+AGG | + | chr1.3:6428754-6428773 | MS.gene051572:intron | 30.0% | |
| TAAATCTTGGATACCTTTGT+TGG | - | chr1.3:6428536-6428555 | None:intergenic | 30.0% | |
| TAAGAAGTGAAGCGATAAAA+AGG | - | chr1.3:6429946-6429965 | None:intergenic | 30.0% | |
| TAATTCCGCAACAAATCAAA+AGG | + | chr1.3:6430505-6430524 | MS.gene051572:intron | 30.0% | |
| TAATTCCTATGAACTTGTAG+TGG | - | chr1.3:6431874-6431893 | None:intergenic | 30.0% | |
| TAGAGCAACCAATTGTATAT+AGG | + | chr1.3:6428093-6428112 | MS.gene051572:intron | 30.0% | |
| TATTTCATGCCAGTACTTTA+AGG | + | chr1.3:6430592-6430611 | MS.gene051572:intron | 30.0% | |
| TCAATCTGTTATGCAATTTC+AGG | + | chr1.3:6429036-6429055 | MS.gene051572:intron | 30.0% | |
| TCCTATATATCTTAAACACG+CGG | - | chr1.3:6432016-6432035 | None:intergenic | 30.0% | |
| TCGAAAAATCAACATCATTC+TGG | - | chr1.3:6427998-6428017 | None:intergenic | 30.0% | |
| TCTTAACTGTTAGTGAAGAA+TGG | - | chr1.3:6430899-6430918 | None:intergenic | 30.0% | |
| TCTTACCTGCTTAAATATAG+TGG | - | chr1.3:6427620-6427639 | None:intergenic | 30.0% | |
| TGAAAACAAGAACAGAATGA+TGG | + | chr1.3:6430744-6430763 | MS.gene051572:CDS | 30.0% | |
| TGAATTCTTTGGCAAGATTT+GGG | + | chr1.3:6429660-6429679 | MS.gene051572:intron | 30.0% | |
| TGCTAATTATGTTCCAACAA+AGG | + | chr1.3:6428520-6428539 | MS.gene051572:CDS | 30.0% | |
| TGTTGGAAAGATGAGAATTA+TGG | + | chr1.3:6428878-6428897 | MS.gene051572:intron | 30.0% | |
| TTACTGCACTTTATTACTTG+TGG | + | chr1.3:6428800-6428819 | MS.gene051572:intron | 30.0% | |
| TTTCTACAGTTACTTCATGA+TGG | + | chr1.3:6427957-6427976 | MS.gene051572:intron | 30.0% | |
| TTTCTGTTTGTTTGTTTGTG+TGG | + | chr1.3:6428117-6428136 | MS.gene051572:intron | 30.0% | |
| ! | AAAATCTAGATGTCCAGTTT+TGG | + | chr1.3:6426881-6426900 | MS.gene051572:intron | 30.0% |
| ! | AATTTGTTCCCTTAAAGTAC+TGG | - | chr1.3:6430604-6430623 | None:intergenic | 30.0% |
| ! | ATGGACAAACTCTTTATTTC+AGG | + | chr1.3:6431931-6431950 | MS.gene051572:intron | 30.0% |
| ! | CAATAAAAGTACGCAATACT+TGG | + | chr1.3:6427797-6427816 | MS.gene051572:intron | 30.0% |
| ! | CCTACAGAAAGTATAACATA+CGG | - | chr1.3:6428421-6428440 | None:intergenic | 30.0% |
| ! | GCATTAGTTTACAAATGCTT+AGG | - | chr1.3:6431691-6431710 | None:intergenic | 30.0% |
| ! | GTGTTTAAGATTAAGGTTGA+TGG | + | chr1.3:6429590-6429609 | MS.gene051572:intron | 30.0% |
| ! | GTTTTCTGTGAATTGTGTTT+TGG | + | chr1.3:6427888-6427907 | MS.gene051572:intron | 30.0% |
| ! | TCTAATGTTTTGTATTGTGC+AGG | + | chr1.3:6431074-6431093 | MS.gene051572:intron | 30.0% |
| ! | TGTTTTATCTCGTTAAGACT+AGG | - | chr1.3:6429694-6429713 | None:intergenic | 30.0% |
| ! | TTCTTCTTTTGTCTTTTGTC+TGG | + | chr1.3:6429556-6429575 | MS.gene051572:intron | 30.0% |
| ! | TTGTCGTGTGTTTAAGATTA+AGG | + | chr1.3:6429583-6429602 | MS.gene051572:intron | 30.0% |
| ! | TTTGGAATAACTGATCAAAC+AGG | + | chr1.3:6427396-6427415 | MS.gene051572:intron | 30.0% |
| !! | AAAAAGTGTTTGATCATACC+TGG | - | chr1.3:6430719-6430738 | None:intergenic | 30.0% |
| !! | AGACAAAAGAACTTTTTGAG+TGG | + | chr1.3:6430767-6430786 | MS.gene051572:CDS | 30.0% |
| !! | ATGAAATAATGGGTACAATC+TGG | - | chr1.3:6428476-6428495 | None:intergenic | 30.0% |
| !! | GTATGATCAAACACTTTTTG+AGG | + | chr1.3:6430720-6430739 | MS.gene051572:CDS | 30.0% |
| !! | TACTAAATCGGTTTGTAAGA+CGG | - | chr1.3:6426782-6426801 | None:intergenic | 30.0% |
| !! | TCTTAGTCTTATATGCTAAG+TGG | + | chr1.3:6426594-6426613 | MS.gene051572:intron | 30.0% |
| !!! | ATACTCATGTTTTTGGGATT+TGG | + | chr1.3:6427378-6427397 | MS.gene051572:intron | 30.0% |
| !!! | GACAAAAGAACTTTTTGAGT+GGG | + | chr1.3:6430768-6430787 | MS.gene051572:CDS | 30.0% |
| !!! | TATCAATGGTCCCTTTTTTT+AGG | + | chr1.3:6427574-6427593 | MS.gene051572:intron | 30.0% |
| !!! | TTTTCTTGTTTTCTCCAACA+GGG | - | chr1.3:6430283-6430302 | None:intergenic | 30.0% |
| !!! | TTTTTTTTCCGTCTCCATTA+TGG | + | chr1.3:6427076-6427095 | MS.gene051572:intron | 30.0% |
| AAAACTGTAACTCCAAACAG+TGG | - | chr1.3:6427873-6427892 | None:intergenic | 35.0% | |
| AAAAGAGAGAGACATGAGAT+AGG | - | chr1.3:6430928-6430947 | None:intergenic | 35.0% | |
| AAAGTAATACCAAAGGCCAA+AGG | - | chr1.3:6429236-6429255 | None:intergenic | 35.0% | |
| AAAGTACGCAATACTTGGAA+AGG | + | chr1.3:6427802-6427821 | MS.gene051572:intron | 35.0% | |
| AAAGTTGAACTTTGCCATGT+TGG | + | chr1.3:6426633-6426652 | MS.gene051572:intron | 35.0% | |
| AAATGGATCCATCTGTTTGA+AGG | + | chr1.3:6430356-6430375 | MS.gene051572:CDS | 35.0% | |
| AACCACTCACATACATTAAG+CGG | - | chr1.3:6431102-6431121 | None:intergenic | 35.0% | |
| AACCTCATACACTTTGTCAA+TGG | + | chr1.3:6431030-6431049 | MS.gene051572:intron | 35.0% | |
| AAGTACGCAATACTTGGAAA+GGG | + | chr1.3:6427803-6427822 | MS.gene051572:intron | 35.0% | |
| ACAAGCTTCAACATGAGTAT+GGG | - | chr1.3:6431504-6431523 | None:intergenic | 35.0% | |
| ACAGACTACTTATGAACTCT+CGG | - | chr1.3:6427015-6427034 | None:intergenic | 35.0% | |
| ACTAGATGAAAGCTCGTAAA+TGG | - | chr1.3:6427210-6427229 | None:intergenic | 35.0% | |
| ACTTATGAACTCTCGGTATT+CGG | - | chr1.3:6427008-6427027 | None:intergenic | 35.0% | |
| AGACAACACCAGTGTTTAAA+GGG | - | chr1.3:6429310-6429329 | None:intergenic | 35.0% | |
| AGGTCATTTCTCATCTAATG+TGG | - | chr1.3:6426932-6426951 | None:intergenic | 35.0% | |
| ATCTGTTATGCAATTTCAGG+AGG | + | chr1.3:6429039-6429058 | MS.gene051572:intron | 35.0% | |
| ATGACCGTTTCCATAAATTC+TGG | + | chr1.3:6429805-6429824 | MS.gene051572:intron | 35.0% | |
| CAAATCTTGCCAAAGAATTC+AGG | - | chr1.3:6429661-6429680 | None:intergenic | 35.0% | |
| CAAGTTTGACAATAAGGGAA+TGG | + | chr1.3:6429428-6429447 | MS.gene051572:intron | 35.0% | |
| CAATTATGTTGTTGTGCAAG+GGG | - | chr1.3:6430237-6430256 | None:intergenic | 35.0% | |
| CACCAAGCTTCAAATAATGA+AGG | - | chr1.3:6430186-6430205 | None:intergenic | 35.0% | |
| CATATTTGAGAAGAAGATCC+TGG | + | chr1.3:6430991-6431010 | MS.gene051572:CDS | 35.0% | |
| CCGTATGTTATACTTTCTGT+AGG | + | chr1.3:6428418-6428437 | MS.gene051572:intron | 35.0% | |
| CCTACCAGAATTTATGGAAA+CGG | - | chr1.3:6429812-6429831 | None:intergenic | 35.0% | |
| CTGAATTCTTTGGCAAGATT+TGG | + | chr1.3:6429659-6429678 | MS.gene051572:intron | 35.0% | |
| CTGTATTTATCCCATTAGTC+AGG | + | chr1.3:6430052-6430071 | MS.gene051572:intron | 35.0% | |
| GAAATCAAGTAACCCTCAAT+CGG | - | chr1.3:6427165-6427184 | None:intergenic | 35.0% | |
| GAAGAAACAATGACACATAG+AGG | - | chr1.3:6429542-6429561 | None:intergenic | 35.0% | |
| GAAGTCCACTATATTTAAGC+AGG | + | chr1.3:6427612-6427631 | MS.gene051572:CDS | 35.0% | |
| GGCGAAAAGTTATCAGAAAT+TGG | + | chr1.3:6428222-6428241 | MS.gene051572:CDS | 35.0% | |
| GGGAACAGAAAAAATTCCAT+AGG | - | chr1.3:6430868-6430887 | None:intergenic | 35.0% | |
| GTAGTAAACCCTTTAAACAC+TGG | + | chr1.3:6429299-6429318 | MS.gene051572:intron | 35.0% | |
| GTCTATAGACTGTTTGATGT+CGG | + | chr1.3:6430311-6430330 | MS.gene051572:CDS | 35.0% | |
| GTTGGAGAAAACAAGAAAAG+TGG | + | chr1.3:6430284-6430303 | MS.gene051572:CDS | 35.0% | |
| TACAAGCTTCAACATGAGTA+TGG | - | chr1.3:6431505-6431524 | None:intergenic | 35.0% | |
| TAGACATTAGCATGAATGAC+TGG | - | chr1.3:6427772-6427791 | None:intergenic | 35.0% | |
| TATTACTTGTGGAGATGCAT+GGG | + | chr1.3:6428811-6428830 | MS.gene051572:intron | 35.0% | |
| TGAAGCGATAAAAAGGTCAA+AGG | - | chr1.3:6429939-6429958 | None:intergenic | 35.0% | |
| TGCTTATTACTCGGAGAAAA+TGG | + | chr1.3:6429209-6429228 | MS.gene051572:intron | 35.0% | |
| TGTATTCAACTTCCGATTGA+GGG | + | chr1.3:6427150-6427169 | MS.gene051572:intron | 35.0% | |
| TTATTACTTGTGGAGATGCA+TGG | + | chr1.3:6428810-6428829 | MS.gene051572:intron | 35.0% | |
| TTCCATAAATTCTGGTAGGA+AGG | + | chr1.3:6429813-6429832 | MS.gene051572:intron | 35.0% | |
| TTGACAAAGTGTATGAGGTT+AGG | - | chr1.3:6431030-6431049 | None:intergenic | 35.0% | |
| TTTCTTACCTACGTTGAAAG+TGG | + | chr1.3:6431846-6431865 | MS.gene051572:intron | 35.0% | |
| ! | AATTTTTCCTGACAGGACAT+TGG | + | chr1.3:6428201-6428220 | MS.gene051572:intron | 35.0% |
| ! | ACCGCGTGTTTAAGATATAT+AGG | + | chr1.3:6432012-6432031 | MS.gene051572:CDS | 35.0% |
| ! | ATGTTCAATCTCTTGTTTCC+CGG | - | chr1.3:6431148-6431167 | None:intergenic | 35.0% |
| ! | CACCTTCATTATTTGAAGCT+TGG | + | chr1.3:6430181-6430200 | MS.gene051572:intron | 35.0% |
| ! | CTCGTTGTAAAACTCCTTTT+TGG | - | chr1.3:6429335-6429354 | None:intergenic | 35.0% |
| ! | CTCTCTTAATTTTTCCTGAC+AGG | + | chr1.3:6428194-6428213 | MS.gene051572:intron | 35.0% |
| ! | CTTAGTCCTTCGATGTTTTT+CGG | + | chr1.3:6428372-6428391 | MS.gene051572:intron | 35.0% |
| ! | GATGAAAATAGCTTGTGACA+TGG | - | chr1.3:6431420-6431439 | None:intergenic | 35.0% |
| ! | GATGACAGTTTTCTCCATAA+TGG | - | chr1.3:6427093-6427112 | None:intergenic | 35.0% |
| ! | GTCTTACAAACCGATTTAGT+AGG | + | chr1.3:6426781-6426800 | MS.gene051572:intron | 35.0% |
| ! | TTCACTATGCTGTGTTTCTA+AGG | + | chr1.3:6429465-6429484 | MS.gene051572:intron | 35.0% |
| ! | TTGTTGATGAGACTTTGAGA+CGG | + | chr1.3:6432078-6432097 | MS.gene051572:CDS | 35.0% |
| !! | ACTAAATCGGTTTGTAAGAC+GGG | - | chr1.3:6426781-6426800 | None:intergenic | 35.0% |
| !! | AGTTTTCTCCATAATGGAGA+CGG | - | chr1.3:6427087-6427106 | None:intergenic | 35.0% |
| !! | ATTTCAAACTGGCTTTGATG+AGG | + | chr1.3:6427726-6427745 | MS.gene051572:CDS | 35.0% |
| !! | CAGTGTTGGCATCATTATAA+CGG | - | chr1.3:6426370-6426389 | None:intergenic | 35.0% |
| !! | GAATAAGAGTATTAGAGGGA+AGG | + | chr1.3:6428935-6428954 | MS.gene051572:intron | 35.0% |
| !! | TAACGAGAGCATTGAATGTT+TGG | - | chr1.3:6427056-6427075 | None:intergenic | 35.0% |
| !!! | CTTTTCTTGTTTTCTCCAAC+AGG | - | chr1.3:6430284-6430303 | None:intergenic | 35.0% |
| !!! | TTGACGTACCTTATTTTCAC+TGG | - | chr1.3:6428033-6428052 | None:intergenic | 35.0% |
| AAAAGGATCACACAGACTTG+AGG | + | chr1.3:6428771-6428790 | MS.gene051572:intron | 40.0% | |
| AAAGGATCACACAGACTTGA+GGG | + | chr1.3:6428772-6428791 | MS.gene051572:intron | 40.0% | |
| AAATTCTGGTAGGAAGGACA+AGG | + | chr1.3:6429819-6429838 | MS.gene051572:intron | 40.0% | |
| AATTTGGCGCTTATAGCACA+AGG | + | chr1.3:6431258-6431277 | MS.gene051572:intron | 40.0% | |
| ACCACTCACATACATTAAGC+GGG | - | chr1.3:6431101-6431120 | None:intergenic | 40.0% | |
| ACTCTCCAGCTCCTAAAAAA+AGG | - | chr1.3:6427588-6427607 | None:intergenic | 40.0% | |
| ACTGTCATCTTTGCAGCATA+AGG | + | chr1.3:6427104-6427123 | MS.gene051572:intron | 40.0% | |
| AGAAATAGAGAGTCTGTGGA+AGG | + | chr1.3:6428287-6428306 | MS.gene051572:CDS | 40.0% | |
| AGAGAAATGAGAGGAGGAAA+TGG | + | chr1.3:6430339-6430358 | MS.gene051572:CDS | 40.0% | |
| AGGCTATAATTCAACGCCTA+AGG | - | chr1.3:6431198-6431217 | None:intergenic | 40.0% | |
| AGTGTTTGATCATACCTGGA+AGG | - | chr1.3:6430715-6430734 | None:intergenic | 40.0% | |
| AGTTATCAGAAATTGGAGGC+AGG | + | chr1.3:6428229-6428248 | MS.gene051572:CDS | 40.0% | |
| AGTTCATAAGTAGTCTGTGC+AGG | + | chr1.3:6427017-6427036 | MS.gene051572:intron | 40.0% | |
| ATACACTTTGTCAATGGTGG+AGG | + | chr1.3:6431036-6431055 | MS.gene051572:intron | 40.0% | |
| ATATTTCCAGAACACTGCTC+CGG | + | chr1.3:6431980-6431999 | MS.gene051572:CDS | 40.0% | |
| ATGTCTTCTTCACAACCTTC+TGG | - | chr1.3:6432052-6432071 | None:intergenic | 40.0% | |
| ATTTCCTCCTCTCATTTCTC+TGG | - | chr1.3:6430340-6430359 | None:intergenic | 40.0% | |
| ATTTGGCGCTTATAGCACAA+GGG | + | chr1.3:6431259-6431278 | MS.gene051572:intron | 40.0% | |
| CAACACTGAAGAAAATGCAC+AGG | + | chr1.3:6426382-6426401 | MS.gene051572:CDS | 40.0% | |
| CAAGCTTCAACATGAGTATG+GGG | - | chr1.3:6431503-6431522 | None:intergenic | 40.0% | |
| CACAAGAAATAGAGAGTCTG+TGG | + | chr1.3:6428283-6428302 | MS.gene051572:CDS | 40.0% | |
| CACCATTGACAAAGTGTATG+AGG | - | chr1.3:6431035-6431054 | None:intergenic | 40.0% | |
| CAGACAACACCAGTGTTTAA+AGG | - | chr1.3:6429311-6429330 | None:intergenic | 40.0% | |
| CATTAGCATGAATGACTGGT+AGG | - | chr1.3:6427768-6427787 | None:intergenic | 40.0% | |
| CCGTTTCCATAAATTCTGGT+AGG | + | chr1.3:6429809-6429828 | MS.gene051572:intron | 40.0% | |
| CTCATACACTTTGTCAATGG+TGG | + | chr1.3:6431033-6431052 | MS.gene051572:intron | 40.0% | |
| CTCTCCAGCTCCTAAAAAAA+GGG | - | chr1.3:6427587-6427606 | None:intergenic | 40.0% | |
| CTGAAACTCCTTCAAACAGA+TGG | - | chr1.3:6430367-6430386 | None:intergenic | 40.0% | |
| CTGATACCGAAAAACATCGA+AGG | - | chr1.3:6428381-6428400 | None:intergenic | 40.0% | |
| CTTATGAACTCTCGGTATTC+GGG | - | chr1.3:6427007-6427026 | None:intergenic | 40.0% | |
| GAAACACAGCATAGTGAAGA+AGG | - | chr1.3:6429463-6429482 | None:intergenic | 40.0% | |
| GGGATAGTTGGCTATTGATA+TGG | + | chr1.3:6427243-6427262 | MS.gene051572:intron | 40.0% | |
| GTCCTTCCTACCAGAATTTA+TGG | - | chr1.3:6429818-6429837 | None:intergenic | 40.0% | |
| GTGTATTCAACTTCCGATTG+AGG | + | chr1.3:6427149-6427168 | MS.gene051572:intron | 40.0% | |
| GTGTTGTAGAGATTCAGTTC+AGG | + | chr1.3:6429092-6429111 | MS.gene051572:CDS | 40.0% | |
| TACTCAGAGAAACGCGTATT+CGG | + | chr1.3:6429152-6429171 | MS.gene051572:intron | 40.0% | |
| TAGTGAAGAATGGAGCTCTA+AGG | - | chr1.3:6430889-6430908 | None:intergenic | 40.0% | |
| TATAGACTGTTTGATGTCGG+TGG | + | chr1.3:6430314-6430333 | MS.gene051572:CDS | 40.0% | |
| TCTGATACCACTTGGAATTC+AGG | - | chr1.3:6426823-6426842 | None:intergenic | 40.0% | |
| TGCTAGTTGCCTGAATTCTT+TGG | + | chr1.3:6429649-6429668 | MS.gene051572:intron | 40.0% | |
| TGGTACCACTACAAGTTCAT+AGG | + | chr1.3:6431866-6431885 | MS.gene051572:intron | 40.0% | |
| TGTTAGTATTATGATGGCCG+TGG | + | chr1.3:6429905-6429924 | MS.gene051572:intron | 40.0% | |
| TTTGTCACATTGTGGGTCTT+GGG | + | chr1.3:6428619-6428638 | MS.gene051572:intron | 40.0% | |
| ! | AATGGGTACAATCTGGAACT+TGG | - | chr1.3:6428469-6428488 | None:intergenic | 40.0% |
| ! | AGTGAAGAATGGAGCTCTAA+GGG | - | chr1.3:6430888-6430907 | None:intergenic | 40.0% |
| ! | ATCTAGTAGCCTGAGCTTTT+GGG | + | chr1.3:6427223-6427242 | MS.gene051572:intron | 40.0% |
| ! | ATGCTGTGTTTCTAAGGATC+AGG | + | chr1.3:6429471-6429490 | MS.gene051572:intron | 40.0% |
| ! | CCTCAAAACATTGTTGCTTC+AGG | - | chr1.3:6430795-6430814 | None:intergenic | 40.0% |
| ! | CCTGAAGCAACAATGTTTTG+AGG | + | chr1.3:6430792-6430811 | MS.gene051572:CDS | 40.0% |
| ! | CTAGATTTTTACCCGAAAGC+AGG | - | chr1.3:6426870-6426889 | None:intergenic | 40.0% |
| ! | CTGTGCATTTTCTTCAGTGT+TGG | - | chr1.3:6426384-6426403 | None:intergenic | 40.0% |
| ! | TTTTGTCACATTGTGGGTCT+TGG | + | chr1.3:6428618-6428637 | MS.gene051572:intron | 40.0% |
| !! | AAGCACTTCTGAGACTGTTT+CGG | - | chr1.3:6431442-6431461 | None:intergenic | 40.0% |
| !! | CTAAATCGGTTTGTAAGACG+GGG | - | chr1.3:6426780-6426799 | None:intergenic | 40.0% |
| !! | GTCTGCTTTTGTCACATTGT+GGG | + | chr1.3:6428612-6428631 | MS.gene051572:intron | 40.0% |
| !! | TAAATCGGTTTGTAAGACGG+GGG | - | chr1.3:6426779-6426798 | None:intergenic | 40.0% |
| !! | TGTCTGCTTTTGTCACATTG+TGG | + | chr1.3:6428611-6428630 | MS.gene051572:intron | 40.0% |
| !!! | ATGTCCAGTTTTGGACATGA+CGG | + | chr1.3:6426890-6426909 | MS.gene051572:intron | 40.0% |
| !!! | GAATTGTGTTTTGGTTGAGC+TGG | + | chr1.3:6427897-6427916 | MS.gene051572:intron | 40.0% |
| !!! | TGTTATTTTGACAGCCCTGT+TGG | + | chr1.3:6430266-6430285 | MS.gene051572:intron | 40.0% |
| !!! | TTTTTTAGGAGCTGGAGAGT+CGG | + | chr1.3:6427588-6427607 | MS.gene051572:intron | 40.0% |
| AACATGAGTATGGGGAAGCT+TGG | - | chr1.3:6431495-6431514 | None:intergenic | 45.0% | |
| AACTTGGAGCTCATTACCAC+GGG | - | chr1.3:6428453-6428472 | None:intergenic | 45.0% | |
| ACACGCACAGTGCTAAGATA+CGG | - | chr1.3:6427656-6427675 | None:intergenic | 45.0% | |
| ACTCGGAGAAAATGGTCCTT+TGG | + | chr1.3:6429217-6429236 | MS.gene051572:intron | 45.0% | |
| AGAGCCTATCCAAGATCCAT+TGG | + | chr1.3:6426840-6426859 | MS.gene051572:intron | 45.0% | |
| AGTGGTACCACTTTCAACGT+AGG | - | chr1.3:6431856-6431875 | None:intergenic | 45.0% | |
| ATGATCAACTCGTGACCACT+TGG | - | chr1.3:6427283-6427302 | None:intergenic | 45.0% | |
| CAAAGTGTATGAGGTTAGGC+TGG | - | chr1.3:6431026-6431045 | None:intergenic | 45.0% | |
| CTCCAAACCAACCTTACATC+CGG | + | chr1.3:6429982-6430001 | MS.gene051572:intron | 45.0% | |
| CTCGTTAAGACTAGGAACAC+CGG | - | chr1.3:6429686-6429705 | None:intergenic | 45.0% | |
| CTGAATCTCTACAACACCAG+TGG | - | chr1.3:6429089-6429108 | None:intergenic | 45.0% | |
| CTTGAAATTCGTAAGTCGGC+AGG | - | chr1.3:6429412-6429431 | None:intergenic | 45.0% | |
| GAACTTGGAGCTCATTACCA+CGG | - | chr1.3:6428454-6428473 | None:intergenic | 45.0% | |
| GCATAGTGAAGAAGGAACAC+TGG | - | chr1.3:6429455-6429474 | None:intergenic | 45.0% | |
| GGAAAATTTGCAGAGGCTGT+CGG | + | chr1.3:6428496-6428515 | MS.gene051572:CDS | 45.0% | |
| GGCATAACCTGAATTCCAAG+TGG | + | chr1.3:6426813-6426832 | MS.gene051572:intron | 45.0% | |
| GTATCAAGCTTCTGACCAAG+TGG | + | chr1.3:6427265-6427284 | MS.gene051572:intron | 45.0% | |
| GTGCAAGTTCCTTAGTGAGA+CGG | - | chr1.3:6428266-6428285 | None:intergenic | 45.0% | |
| TCCAGCGCAACGAATTAACA+TGG | + | chr1.3:6431912-6431931 | MS.gene051572:intron | 45.0% | |
| TCCATGTTAATTCGTTGCGC+TGG | - | chr1.3:6431916-6431935 | None:intergenic | 45.0% | |
| TCCCGCTTAATGTATGTGAG+TGG | + | chr1.3:6431097-6431116 | MS.gene051572:CDS | 45.0% | |
| TGCAAGTTCCTTAGTGAGAC+GGG | - | chr1.3:6428265-6428284 | None:intergenic | 45.0% | |
| TGGTCCAATGGATCTTGGAT+AGG | - | chr1.3:6426847-6426866 | None:intergenic | 45.0% | |
| TGTGTTGCGATTAGCGAGTA+TGG | + | chr1.3:6430398-6430417 | MS.gene051572:intron | 45.0% | |
| TGTTTGCAGTGTCCACTGTT+TGG | + | chr1.3:6427858-6427877 | MS.gene051572:intron | 45.0% | |
| TTCTTTGGCAAGATTTGGGC+CGG | + | chr1.3:6429664-6429683 | MS.gene051572:intron | 45.0% | |
| ! | CATCTAGTAGCCTGAGCTTT+TGG | + | chr1.3:6427222-6427241 | MS.gene051572:intron | 45.0% |
| ! | GAAAATGGTCCTTTGGCCTT+TGG | + | chr1.3:6429224-6429243 | MS.gene051572:intron | 45.0% |
| ! | GATTTTTACCCGAAAGCAGG+TGG | - | chr1.3:6426867-6426886 | None:intergenic | 45.0% |
| ! | TCTTGTTTCCCGGTTGAAAG+TGG | - | chr1.3:6431138-6431157 | None:intergenic | 45.0% |
| ! | TTAGGCTGGTTCTTACATCC+AGG | - | chr1.3:6431012-6431031 | None:intergenic | 45.0% |
| !! | AGCCTTGAGCATTGAAGACT+TGG | + | chr1.3:6431213-6431232 | MS.gene051572:intron | 45.0% |
| !! | CTGGTGTTGTCTGACCAAAA+AGG | + | chr1.3:6429318-6429337 | MS.gene051572:intron | 45.0% |
| !! | GCCTTGAGCATTGAAGACTT+GGG | + | chr1.3:6431214-6431233 | MS.gene051572:intron | 45.0% |
| !! | TTGATGAGACTTTGAGACGG+AGG | + | chr1.3:6432081-6432100 | MS.gene051572:CDS | 45.0% |
| !! | TTTTTAGGAGCTGGAGAGTC+GGG | + | chr1.3:6427589-6427608 | MS.gene051572:intron | 45.0% |
| !!! | TGGTCCCTTTTTTTAGGAGC+TGG | + | chr1.3:6427580-6427599 | MS.gene051572:intron | 45.0% |
| !!! | TGTCCAGTTTTGGACATGAC+GGG | + | chr1.3:6426891-6426910 | MS.gene051572:intron | 45.0% |
| AACCTTCTGGTCAAGTGCAG+TGG | - | chr1.3:6432039-6432058 | None:intergenic | 50.0% | |
| ACACCCGTCATGTCCAAAAC+TGG | - | chr1.3:6426897-6426916 | None:intergenic | 50.0% | |
| AGTGACACCGGATGTAAGGT+TGG | - | chr1.3:6429992-6430011 | None:intergenic | 50.0% | |
| ATCTAACGGGGCCTGACTAA+TGG | - | chr1.3:6430066-6430085 | None:intergenic | 50.0% | |
| CAAGAGTGACACCGGATGTA+AGG | - | chr1.3:6429996-6430015 | None:intergenic | 50.0% | |
| CAAGTTCCTTAGTGAGACGG+GGG | - | chr1.3:6428263-6428282 | None:intergenic | 50.0% | |
| CTGTAGGAAACATATGCCCG+TGG | + | chr1.3:6428434-6428453 | MS.gene051572:intron | 50.0% | |
| CTTGCAAGAGTTCGTACCAC+TGG | + | chr1.3:6429070-6429089 | MS.gene051572:CDS | 50.0% | |
| GAGACGGAGGAATCTCTTTG+AGG | + | chr1.3:6432094-6432113 | MS.gene051572:CDS | 50.0% | |
| GATGCATGGGACTGAATGCT+AGG | + | chr1.3:6428824-6428843 | MS.gene051572:intron | 50.0% | |
| GCAAGTTCCTTAGTGAGACG+GGG | - | chr1.3:6428264-6428283 | None:intergenic | 50.0% | |
| GCCAACTATCCCAAAAGCTC+AGG | - | chr1.3:6427235-6427254 | None:intergenic | 50.0% | |
| GCCCAAGTCTTCAATGCTCA+AGG | - | chr1.3:6431218-6431237 | None:intergenic | 50.0% | |
| GGTCAAAGGTTCGATCACCA+CGG | - | chr1.3:6429925-6429944 | None:intergenic | 50.0% | |
| GTAGGAAGGACAAGGCATGT+CGG | + | chr1.3:6429827-6429846 | MS.gene051572:intron | 50.0% | |
| GTGGAAGGATGCTGCAATTC+AGG | + | chr1.3:6428302-6428321 | MS.gene051572:CDS | 50.0% | |
| TCCATTGGACCACCTGCTTT+CGG | + | chr1.3:6426855-6426874 | MS.gene051572:intron | 50.0% | |
| TCTAACGGGGCCTGACTAAT+GGG | - | chr1.3:6430065-6430084 | None:intergenic | 50.0% | |
| TGAACTCTCGGTATTCGGGT+TGG | - | chr1.3:6427003-6427022 | None:intergenic | 50.0% | |
| TGACATCTCACTTGCCTTCC+AGG | + | chr1.3:6430698-6430717 | MS.gene051572:intron | 50.0% | |
| TGAGTATGGGGAAGCTTGGA+TGG | - | chr1.3:6431491-6431510 | None:intergenic | 50.0% | |
| TGATTACCCCCGTCTCACTA+AGG | + | chr1.3:6428254-6428273 | MS.gene051572:CDS | 50.0% | |
| TTGAAGACTTGGGCCCTGTT+TGG | + | chr1.3:6431224-6431243 | MS.gene051572:intron | 50.0% | |
| ! | ACTACCAGCCACTTTCAACC+GGG | + | chr1.3:6431127-6431146 | MS.gene051572:CDS | 50.0% |
| ! | CACCGGATGTAAGGTTGGTT+TGG | - | chr1.3:6429987-6430006 | None:intergenic | 50.0% |
| ! | CTTTTCGCCAATGTCCTGTC+AGG | - | chr1.3:6428211-6428230 | None:intergenic | 50.0% |
| ! | GAACTCTCGGTATTCGGGTT+GGG | - | chr1.3:6427002-6427021 | None:intergenic | 50.0% |
| ! | GACTACCAGCCACTTTCAAC+CGG | + | chr1.3:6431126-6431145 | MS.gene051572:CDS | 50.0% |
| ! | GGATAGGCTCTGATACCACT+TGG | - | chr1.3:6426831-6426850 | None:intergenic | 50.0% |
| !! | CGGATGTAAGGTTGGTTTGG+AGG | - | chr1.3:6429984-6430003 | None:intergenic | 50.0% |
| !! | GTAAGGTTGGTTTGGAGGCT+GGG | - | chr1.3:6429979-6429998 | None:intergenic | 50.0% |
| !! | TAAGGTTGGTTTGGAGGCTG+GGG | - | chr1.3:6429978-6429997 | None:intergenic | 50.0% |
| !! | TGTAAGGTTGGTTTGGAGGC+TGG | - | chr1.3:6429980-6429999 | None:intergenic | 50.0% |
| !! | TTTTAGGAGCTGGAGAGTCG+GGG | + | chr1.3:6427590-6427609 | MS.gene051572:intron | 50.0% |
| !!! | GCCTGAGCTTTTGGGATAGT+TGG | + | chr1.3:6427231-6427250 | MS.gene051572:intron | 50.0% |
| AACACGCGGTCTACGCTATC+CGG | - | chr1.3:6432002-6432021 | None:intergenic | 55.0% | |
| AATTCGTTGCGCTGGACTGC+TGG | - | chr1.3:6431908-6431927 | None:intergenic | 55.0% | |
| CCATTGGACCACCTGCTTTC+GGG | + | chr1.3:6426856-6426875 | MS.gene051572:intron | 55.0% | |
| GACCACTGCACTTGACCAGA+AGG | + | chr1.3:6432034-6432053 | MS.gene051572:CDS | 55.0% | |
| GCAGGTGGTCCAATGGATCT+TGG | - | chr1.3:6426852-6426871 | None:intergenic | 55.0% | |
| GCATGGGACTGAATGCTAGG+TGG | + | chr1.3:6428827-6428846 | MS.gene051572:intron | 55.0% | |
| GTGGCCAGAGAAATGAGAGG+AGG | + | chr1.3:6430333-6430352 | MS.gene051572:CDS | 55.0% | |
| GTTTCCCGGTTGAAAGTGGC+TGG | - | chr1.3:6431134-6431153 | None:intergenic | 55.0% | |
| TCGGTGGCCAGAGAAATGAG+AGG | + | chr1.3:6430330-6430349 | MS.gene051572:CDS | 55.0% | |
| !! | CGGAGGAATCTCTTTGAGGC+TGG | + | chr1.3:6432098-6432117 | MS.gene051572:CDS | 55.0% |
| !! | GGGACTAGCTTGCAAGGTGA+GGG | - | chr1.3:6426982-6427001 | None:intergenic | 55.0% |
| !! | TGGGACTAGCTTGCAAGGTG+AGG | - | chr1.3:6426983-6427002 | None:intergenic | 55.0% |
| CCCGAAAGCAGGTGGTCCAA+TGG | - | chr1.3:6426859-6426878 | None:intergenic | 60.0% | |
| CGCTATCCGGAGCAGTGTTC+TGG | - | chr1.3:6431989-6432008 | None:intergenic | 60.0% | |
| !! | CGGGTTGGGACTAGCTTGCA+AGG | - | chr1.3:6426988-6427007 | None:intergenic | 60.0% |
| !! | GGTTGGTTTGGAGGCTGGGG+TGG | - | chr1.3:6429975-6429994 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 6426341 | 6432130 | 6426341 | ID=MS.gene051572 |
| chr1.3 | mRNA | 6426341 | 6432130 | 6426341 | ID=MS.gene051572.t1;Parent=MS.gene051572 |
| chr1.3 | exon | 6426341 | 6426403 | 6426341 | ID=MS.gene051572.t1.exon1;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6426341 | 6426403 | 6426341 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6426492 | 6426564 | 6426492 | ID=MS.gene051572.t1.exon2;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6426492 | 6426564 | 6426492 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6427596 | 6427633 | 6427596 | ID=MS.gene051572.t1.exon3;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6427596 | 6427633 | 6427596 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6427715 | 6427804 | 6427715 | ID=MS.gene051572.t1.exon4;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6427715 | 6427804 | 6427715 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6427966 | 6428043 | 6427966 | ID=MS.gene051572.t1.exon5;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6427966 | 6428043 | 6427966 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6428216 | 6428323 | 6428216 | ID=MS.gene051572.t1.exon6;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6428216 | 6428323 | 6428216 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6428440 | 6428541 | 6428440 | ID=MS.gene051572.t1.exon7;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6428440 | 6428541 | 6428440 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6429058 | 6429113 | 6429058 | ID=MS.gene051572.t1.exon8;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6429058 | 6429113 | 6429058 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6430280 | 6430414 | 6430280 | ID=MS.gene051572.t1.exon9;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6430280 | 6430414 | 6430280 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6430720 | 6430813 | 6430720 | ID=MS.gene051572.t1.exon10;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6430720 | 6430813 | 6430720 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6430956 | 6431015 | 6430956 | ID=MS.gene051572.t1.exon11;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6430956 | 6431015 | 6430956 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6431096 | 6431175 | 6431096 | ID=MS.gene051572.t1.exon12;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6431096 | 6431175 | 6431096 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| chr1.3 | exon | 6431953 | 6432130 | 6431953 | ID=MS.gene051572.t1.exon13;Parent=MS.gene051572.t1 |
| chr1.3 | CDS | 6431953 | 6432130 | 6431953 | ID=cds.MS.gene051572.t1;Parent=MS.gene051572.t1 |
| Gene Sequence |
| Protein sequence |
