AlfalfaGEDB | MS.gene26380

M. sativa cultivar XinJiangDaYe / MS.gene26380

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26380.t1	XP_013456959.1	100	84	0	0	69	152	275	358	4.80E-27	131

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26380.t1	I3T3J6	100.0	84	0	0	69	152	275	358	3.5e-27	131.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene26380	0.842132	3.12E-58	-1.69E-46
MS.gene049190	MS.gene26380	0.828734	7.62E-55	-1.69E-46
MS.gene049227	MS.gene26380	0.845264	4.53E-59	-1.69E-46
MS.gene049254	MS.gene26380	0.80514	1.54E-49	-1.69E-46
MS.gene049350	MS.gene26380	0.841194	5.51E-58	-1.69E-46
MS.gene049404	MS.gene26380	0.801559	8.50E-49	-1.69E-46
MS.gene049418	MS.gene26380	0.855266	7.08E-62	-1.69E-46
MS.gene049441	MS.gene26380	0.80489	1.74E-49	-1.69E-46
MS.gene049672	MS.gene26380	0.804926	1.71E-49	-1.69E-46
MS.gene049711	MS.gene26380	0.892415	1.62E-74	-1.69E-46
MS.gene049807	MS.gene26380	0.855726	5.20E-62	-1.69E-46
MS.gene049824	MS.gene26380	0.81816	2.27E-52	-1.69E-46
MS.gene049850	MS.gene26380	0.827002	1.99E-54	-1.69E-46
MS.gene050221	MS.gene26380	0.801535	8.60E-49	-1.69E-46
MS.gene050241	MS.gene26380	0.812188	4.81E-51	-1.69E-46
MS.gene050273	MS.gene26380	0.802293	6.01E-49	-1.69E-46
MS.gene050310	MS.gene26380	0.801351	9.38E-49	-1.69E-46
MS.gene050559	MS.gene26380	0.822332	2.51E-53	-1.69E-46
MS.gene050561	MS.gene26380	0.820489	6.68E-53	-1.69E-46
MS.gene050562	MS.gene26380	0.818752	1.66E-52	-1.69E-46
MS.gene050657	MS.gene26380	0.83678	7.66E-57	-1.69E-46
MS.gene050807	MS.gene26380	0.800567	1.36E-48	-1.69E-46
MS.gene050901	MS.gene26380	0.808694	2.73E-50	-1.69E-46
MS.gene051018	MS.gene26380	0.850993	1.19E-60	-1.69E-46
MS.gene051021	MS.gene26380	0.883207	5.45E-71	-1.69E-46
MS.gene051247	MS.gene26380	0.831498	1.61E-55	-1.69E-46
MS.gene051279	MS.gene26380	0.877441	6.27E-69	-1.69E-46
MS.gene051388	MS.gene26380	0.835556	1.57E-56	-1.69E-46
MS.gene051478	MS.gene26380	0.805772	1.14E-49	-1.69E-46
MS.gene05150	MS.gene26380	0.815562	8.67E-52	-1.69E-46
MS.gene05155	MS.gene26380	0.805526	1.28E-49	-1.69E-46
MS.gene051572	MS.gene26380	0.800792	1.22E-48	-1.69E-46
MS.gene05157	MS.gene26380	0.818947	1.50E-52	-1.69E-46
MS.gene051648	MS.gene26380	0.806648	7.43E-50	-1.69E-46
MS.gene051664	MS.gene26380	0.822218	2.67E-53	-1.69E-46
MS.gene051700	MS.gene26380	0.818405	1.99E-52	-1.69E-46
MS.gene051719	MS.gene26380	0.868963	4.42E-66	-1.69E-46
MS.gene051720	MS.gene26380	0.889323	2.69E-73	-1.69E-46
MS.gene051744	MS.gene26380	0.860114	2.59E-63	-1.69E-46
MS.gene051957	MS.gene26380	0.802797	4.73E-49	-1.69E-46
MS.gene052000	MS.gene26380	0.804794	1.82E-49	-1.69E-46
MS.gene052016	MS.gene26380	0.806413	8.33E-50	-1.69E-46
MS.gene052037	MS.gene26380	0.818221	2.20E-52	-1.69E-46
MS.gene052133	MS.gene26380	0.804158	2.47E-49	-1.69E-46
MS.gene052155	MS.gene26380	-0.804632	1.97E-49	-1.69E-46
MS.gene052234	MS.gene26380	0.819533	1.10E-52	-1.69E-46
MS.gene052307	MS.gene26380	0.803755	3.00E-49	-1.69E-46
MS.gene052311	MS.gene26380	0.801307	9.58E-49	-1.69E-46
MS.gene052463	MS.gene26380	0.832036	1.19E-55	-1.69E-46
MS.gene052514	MS.gene26380	0.805925	1.06E-49	-1.69E-46
MS.gene052516	MS.gene26380	0.844981	5.40E-59	-1.69E-46
MS.gene052582	MS.gene26380	0.803124	4.05E-49	-1.69E-46
MS.gene052584	MS.gene26380	0.8184	2.00E-52	-1.69E-46
MS.gene052609	MS.gene26380	0.806871	6.67E-50	-1.69E-46
MS.gene052665	MS.gene26380	0.800703	1.27E-48	-1.69E-46
MS.gene052731	MS.gene26380	0.809937	1.48E-50	-1.69E-46
MS.gene052732	MS.gene26380	0.867411	1.40E-65	-1.69E-46
MS.gene053079	MS.gene26380	0.820537	6.51E-53	-1.69E-46
MS.gene053122	MS.gene26380	0.831571	1.55E-55	-1.69E-46
MS.gene053143	MS.gene26380	0.81498	1.17E-51	-1.69E-46
MS.gene053144	MS.gene26380	0.926098	7.48E-91	-1.69E-46
MS.gene053164	MS.gene26380	0.81954	1.10E-52	-1.69E-46
MS.gene053171	MS.gene26380	0.864261	1.38E-64	-1.69E-46
MS.gene053174	MS.gene26380	0.830842	2.34E-55	-1.69E-46
MS.gene053226	MS.gene26380	0.840926	6.48E-58	-1.69E-46
MS.gene053536	MS.gene26380	0.868445	6.49E-66	-1.69E-46
MS.gene053538	MS.gene26380	0.866613	2.51E-65	-1.69E-46
MS.gene053540	MS.gene26380	0.808848	2.53E-50	-1.69E-46
MS.gene053581	MS.gene26380	0.850991	1.19E-60	-1.69E-46
MS.gene053599	MS.gene26380	0.828988	6.62E-55	-1.69E-46
MS.gene053945	MS.gene26380	0.806931	6.47E-50	-1.69E-46
MS.gene054142	MS.gene26380	0.80094	1.14E-48	-1.69E-46
MS.gene054178	MS.gene26380	0.800825	1.20E-48	-1.69E-46
MS.gene05422	MS.gene26380	0.801904	7.22E-49	-1.69E-46
MS.gene05423	MS.gene26380	0.812829	3.48E-51	-1.69E-46
MS.gene054480	MS.gene26380	0.802969	4.36E-49	-1.69E-46
MS.gene054550	MS.gene26380	0.817051	4.03E-52	-1.69E-46
MS.gene054554	MS.gene26380	0.827674	1.37E-54	-1.69E-46
MS.gene054584	MS.gene26380	0.931602	2.96E-94	-1.69E-46
MS.gene05458	MS.gene26380	0.809368	1.96E-50	-1.69E-46
MS.gene054651	MS.gene26380	0.839706	1.35E-57	-1.69E-46
MS.gene054824	MS.gene26380	0.81239	4.34E-51	-1.69E-46
MS.gene054991	MS.gene26380	0.804529	2.07E-49	-1.69E-46
MS.gene055083	MS.gene26380	0.842632	2.30E-58	-1.69E-46
MS.gene055103	MS.gene26380	0.807009	6.23E-50	-1.69E-46
MS.gene055144	MS.gene26380	0.845171	4.80E-59	-1.69E-46
MS.gene055465	MS.gene26380	0.871031	9.31E-67	-1.69E-46
MS.gene055466	MS.gene26380	0.863066	3.24E-64	-1.69E-46
MS.gene055467	MS.gene26380	0.811631	6.36E-51	-1.69E-46
MS.gene055468	MS.gene26380	0.86192	7.31E-64	-1.69E-46
MS.gene055469	MS.gene26380	0.846251	2.44E-59	-1.69E-46
MS.gene055513	MS.gene26380	0.819785	9.68E-53	-1.69E-46
MS.gene055537	MS.gene26380	0.905238	5.30E-80	-1.69E-46
MS.gene055580	MS.gene26380	-0.886522	3.18E-72	-1.69E-46
MS.gene055764	MS.gene26380	0.814548	1.46E-51	-1.69E-46
MS.gene055890	MS.gene26380	0.831019	2.12E-55	-1.69E-46
MS.gene055891	MS.gene26380	0.828937	6.81E-55	-1.69E-46
MS.gene056043	MS.gene26380	-0.861975	7.03E-64	-1.69E-46
MS.gene056050	MS.gene26380	0.840018	1.12E-57	-1.69E-46
MS.gene056169	MS.gene26380	0.832844	7.50E-56	-1.69E-46
MS.gene056174	MS.gene26380	0.816679	4.88E-52	-1.69E-46
MS.gene056228	MS.gene26380	0.822807	1.94E-53	-1.69E-46
MS.gene056308	MS.gene26380	0.843642	1.24E-58	-1.69E-46
MS.gene056396	MS.gene26380	0.80047	1.42E-48	-1.69E-46
MS.gene056507	MS.gene26380	0.843399	1.44E-58	-1.69E-46
MS.gene05686	MS.gene26380	0.83959	1.45E-57	-1.69E-46
MS.gene057082	MS.gene26380	0.84865	5.36E-60	-1.69E-46
MS.gene057102	MS.gene26380	0.803554	3.30E-49	-1.69E-46
MS.gene057132	MS.gene26380	0.813268	2.79E-51	-1.69E-46
MS.gene057294	MS.gene26380	0.844661	6.59E-59	-1.69E-46
MS.gene057915	MS.gene26380	0.803356	3.63E-49	-1.69E-46
MS.gene058010	MS.gene26380	0.813171	2.93E-51	-1.69E-46
MS.gene058087	MS.gene26380	0.815135	1.08E-51	-1.69E-46
MS.gene058330	MS.gene26380	0.815035	1.14E-51	-1.69E-46
MS.gene058339	MS.gene26380	0.838434	2.88E-57	-1.69E-46
MS.gene058492	MS.gene26380	0.826858	2.15E-54	-1.69E-46
MS.gene058625	MS.gene26380	0.823086	1.67E-53	-1.69E-46
MS.gene058649	MS.gene26380	0.842949	1.89E-58	-1.69E-46
MS.gene058668	MS.gene26380	0.870304	1.61E-66	-1.69E-46
MS.gene058852	MS.gene26380	0.809022	2.32E-50	-1.69E-46
MS.gene058945	MS.gene26380	0.807453	5.02E-50	-1.69E-46
MS.gene05894	MS.gene26380	0.863732	2.02E-64	-1.69E-46
MS.gene059015	MS.gene26380	0.863641	2.15E-64	-1.69E-46
MS.gene059084	MS.gene26380	0.813592	2.37E-51	-1.69E-46
MS.gene059154	MS.gene26380	0.819029	1.44E-52	-1.69E-46
MS.gene059170	MS.gene26380	0.816109	6.55E-52	-1.69E-46
MS.gene059272	MS.gene26380	0.803808	2.92E-49	-1.69E-46
MS.gene059424	MS.gene26380	0.859115	5.17E-63	-1.69E-46
MS.gene059425	MS.gene26380	0.811361	7.28E-51	-1.69E-46
MS.gene059426	MS.gene26380	0.821222	4.53E-53	-1.69E-46
MS.gene059570	MS.gene26380	0.821819	3.30E-53	-1.69E-46
MS.gene059602	MS.gene26380	0.800437	1.44E-48	-1.69E-46
MS.gene059625	MS.gene26380	0.832266	1.04E-55	-1.69E-46
MS.gene059634	MS.gene26380	0.801348	9.40E-49	-1.69E-46
MS.gene060429	MS.gene26380	0.800379	1.48E-48	-1.69E-46
MS.gene060519	MS.gene26380	0.863655	2.13E-64	-1.69E-46
MS.gene060587	MS.gene26380	0.82875	7.56E-55	-1.69E-46
MS.gene060603	MS.gene26380	0.843119	1.70E-58	-1.69E-46
MS.gene060884	MS.gene26380	0.800634	1.31E-48	-1.69E-46
MS.gene060962	MS.gene26380	0.806641	7.45E-50	-1.69E-46
MS.gene061100	MS.gene26380	0.824062	9.89E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26380.t1	MTR_4g088385	96.104	154	2	3	1	152	207	358	5.53e-91	268
MS.gene26380.t1	MTR_2g014400	52.381	147	56	5	13	151	120	260	1.76e-18	79.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 16 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCAAACTGCTCTTGATTC+TGG	0.250818	4.1:+21896937	None:intergenic
TGTTGTTGTTGTTATTGTTC+TGG	0.280406	4.1:+21897339	None:intergenic
ATTGAGTTGTAACCTTCTTC+TGG	0.340437	4.1:+21897272	None:intergenic
TTGAGTTGTAACCTTCTTCT+GGG	0.440468	4.1:+21897273	None:intergenic
TTCAATGGAGATTCATCTAA+AGG	0.457617	4.1:-21897056	MS.gene26380:CDS
AATGAGTGACACAAGAGTTA+TGG	0.465302	4.1:-21897132	MS.gene26380:CDS
AAATACAATCCAACATTCAA+TGG	0.477159	4.1:-21897071	MS.gene26380:CDS
GAGTTGTGAACTCTGAGAAT+TGG	0.491359	4.1:-21897034	MS.gene26380:CDS
GATGAATCTCCATTGAATGT+TGG	0.492045	4.1:+21897062	None:intergenic
AACACAAAGTTCCCAGAAGA+AGG	0.504928	4.1:-21897284	MS.gene26380:CDS
AATAACAAGAACTCTATGAA+TGG	0.533344	4.1:-21896963	MS.gene26380:CDS
TACAACAATGGTGAGAGGCA+AGG	0.586180	4.1:-21897155	MS.gene26380:CDS
AGTAACAACAATTACAACAA+TGG	0.621284	4.1:-21897167	MS.gene26380:CDS
GACACAAGAGTTATGGAAGG+TGG	0.628338	4.1:-21897125	MS.gene26380:CDS
ACAATTACAACAATGGTGAG+AGG	0.652438	4.1:-21897160	MS.gene26380:CDS
AGTGACACAAGAGTTATGGA+AGG	0.692016	4.1:-21897128	MS.gene26380:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAATACAATCCAACATTCAA+TGG	-	chr4.1:21897187-21897206	MS.gene26380:CDS	25.0%
!	AATAACAAGAACTCTATGAA+TGG	-	chr4.1:21897295-21897314	MS.gene26380:CDS	25.0%
!	AGTAACAACAATTACAACAA+TGG	-	chr4.1:21897091-21897110	MS.gene26380:CDS	25.0%
!	TACAACAAAAAAGGTTACTT+TGG	-	chr4.1:21897247-21897266	MS.gene26380:CDS	25.0%
!!	TTTTTATGATGTTAACTCTG+AGG	-	chr4.1:21897162-21897181	MS.gene26380:CDS	25.0%
	GAGAATTGGTACAACAAAAA+AGG	-	chr4.1:21897238-21897257	MS.gene26380:CDS	30.0%
	TTCAATGGAGATTCATCTAA+AGG	-	chr4.1:21897202-21897221	MS.gene26380:CDS	30.0%
!	TGTTGTTGTTGTTATTGTTC+TGG	+	chr4.1:21896922-21896941	None:intergenic	30.0%
	AATGAGTGACACAAGAGTTA+TGG	-	chr4.1:21897126-21897145	MS.gene26380:CDS	35.0%
	ACAATTACAACAATGGTGAG+AGG	-	chr4.1:21897098-21897117	MS.gene26380:CDS	35.0%
	GATGAATCTCCATTGAATGT+TGG	+	chr4.1:21897199-21897218	None:intergenic	35.0%
!	ATTGAGTTGTAACCTTCTTC+TGG	+	chr4.1:21896989-21897008	None:intergenic	35.0%
!	TTGAGTTGTAACCTTCTTCT+GGG	+	chr4.1:21896988-21897007	None:intergenic	35.0%
	AACACAAAGTTCCCAGAAGA+AGG	-	chr4.1:21896974-21896993	MS.gene26380:CDS	40.0%
	AGTGACACAAGAGTTATGGA+AGG	-	chr4.1:21897130-21897149	MS.gene26380:CDS	40.0%
	CTTCAAACTGCTCTTGATTC+TGG	+	chr4.1:21897324-21897343	None:intergenic	40.0%
!	CGTAGTTGTTGTTGTTGTTC+TGG	+	chr4.1:21897018-21897037	None:intergenic	40.0%
!	GAGTTGTGAACTCTGAGAAT+TGG	-	chr4.1:21897224-21897243	MS.gene26380:CDS	40.0%
	GACACAAGAGTTATGGAAGG+TGG	-	chr4.1:21897133-21897152	MS.gene26380:CDS	45.0%
	TACAACAATGGTGAGAGGCA+AGG	-	chr4.1:21897103-21897122	MS.gene26380:CDS	45.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	21896911	21897369	21896911	ID=MS.gene26380
chr4.1	mRNA	21896911	21897369	21896911	ID=MS.gene26380.t1;Parent=MS.gene26380
chr4.1	exon	21896911	21897369	21896911	ID=MS.gene26380.t1.exon1;Parent=MS.gene26380.t1
chr4.1	CDS	21896911	21897369	21896911	ID=cds.MS.gene26380.t1;Parent=MS.gene26380.t1

Gene Sequence

>MS.gene26380

ATGGAAAACCAGAACAATAACAACAACAACAAGTATTTCTACAACAACAAAGATGCTTCTAGCAACACAAAGTTCCCAGAAGAAGGTTACAACTCAATGCAAAACCAGAACAACAACAACAACTACGAGAAGTATAACTACAACAACAAAGTTGCTGTTAATGACAAATACAGCTTCAAAAGTAACAACAATTACAACAATGGTGAGAGGCAAGGAATGAGTGACACAAGAGTTATGGAAGGTGGAAAATATTTTTATGATGTTAACTCTGAGGAGAAATACAATCCAACATTCAATGGAGATTCATCTAAAGGAGTTGTGAACTCTGAGAATTGGTACAACAAAAAAGGTTACTTTGGTAACAACAATGTGAACAATTATGAGAATAACAAGAACTCTATGAATGGTTACCAGAATCAAGAGCAGTTTGAAGATGATCAAGAAGAATTTGAGCCTTGA

Protein sequence

>MS.gene26380.t1

MENQNNNNNNKYFYNNKDASSNTKFPEEGYNSMQNQNNNNNYEKYNYNNKVAVNDKYSFKSNNNYNNGERQGMSDTRVMEGGKYFYDVNSEEKYNPTFNGDSSKGVVNSENWYNKKGYFGNNNVNNYENNKNSMNGYQNQEQFEDDQEEFEP