Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89248.t1 | XP_003623204.1 | 98.2 | 221 | 4 | 0 | 1 | 221 | 1 | 221 | 1.20E-119 | 439.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89248.t1 | P32110 | 67.3 | 223 | 68 | 2 | 1 | 218 | 1 | 223 | 4.4e-78 | 292.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89248.t1 | G7L6H8 | 98.2 | 221 | 4 | 0 | 1 | 221 | 1 | 221 | 8.7e-120 | 439.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene89248 | 0.809365 | 1.96E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene89248 | 0.826373 | 2.81E-54 | -1.69E-46 |
| MS.gene051572 | MS.gene89248 | 0.803293 | 3.74E-49 | -1.69E-46 |
| MS.gene058492 | MS.gene89248 | 0.81976 | 9.81E-53 | -1.69E-46 |
| MS.gene059774 | MS.gene89248 | 0.803114 | 4.07E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene89248 | 0.811723 | 6.07E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene89248 | 0.800677 | 1.29E-48 | -1.69E-46 |
| MS.gene060697 | MS.gene89248 | 0.801726 | 7.86E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene89248 | 0.800128 | 1.67E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89248.t1 | MTR_7g065680 | 98.190 | 221 | 4 | 0 | 1 | 221 | 1 | 221 | 3.11e-160 | 442 |
| MS.gene89248.t1 | MTR_7g065630 | 85.068 | 221 | 33 | 0 | 1 | 221 | 19 | 239 | 3.33e-137 | 384 |
| MS.gene89248.t1 | MTR_7g065710 | 82.857 | 210 | 33 | 1 | 1 | 210 | 1 | 207 | 1.27e-127 | 359 |
| MS.gene89248.t1 | MTR_7g065700 | 86.667 | 210 | 28 | 0 | 1 | 210 | 1 | 210 | 9.17e-125 | 352 |
| MS.gene89248.t1 | MTR_7g065590 | 65.766 | 222 | 72 | 1 | 1 | 218 | 1 | 222 | 4.12e-103 | 297 |
| MS.gene89248.t1 | MTR_7g065660 | 65.778 | 225 | 73 | 1 | 1 | 221 | 1 | 225 | 3.62e-100 | 290 |
| MS.gene89248.t1 | MTR_7g065600 | 65.315 | 222 | 73 | 1 | 1 | 218 | 1 | 222 | 1.94e-98 | 285 |
| MS.gene89248.t1 | MTR_7g065230 | 67.890 | 218 | 69 | 1 | 1 | 218 | 1 | 217 | 2.01e-98 | 285 |
| MS.gene89248.t1 | MTR_7g065720 | 65.158 | 221 | 72 | 2 | 1 | 216 | 1 | 221 | 1.86e-96 | 280 |
| MS.gene89248.t1 | MTR_7g065740 | 61.062 | 226 | 83 | 2 | 1 | 221 | 1 | 226 | 2.11e-93 | 273 |
| MS.gene89248.t1 | MTR_7g065290 | 62.557 | 219 | 78 | 1 | 1 | 215 | 1 | 219 | 4.20e-93 | 272 |
| MS.gene89248.t1 | MTR_7g065265 | 63.889 | 216 | 74 | 1 | 1 | 212 | 1 | 216 | 1.45e-92 | 271 |
| MS.gene89248.t1 | MTR_7g065750 | 61.504 | 226 | 82 | 2 | 1 | 221 | 1 | 226 | 1.16e-90 | 266 |
| MS.gene89248.t1 | MTR_7g065270 | 61.111 | 216 | 80 | 1 | 1 | 212 | 1 | 216 | 4.52e-89 | 262 |
| MS.gene89248.t1 | MTR_7g065640 | 60.633 | 221 | 73 | 1 | 1 | 221 | 1 | 207 | 9.39e-87 | 255 |
| MS.gene89248.t1 | MTR_4g019790 | 56.889 | 225 | 93 | 1 | 1 | 221 | 1 | 225 | 3.61e-85 | 252 |
| MS.gene89248.t1 | MTR_7g065260 | 61.883 | 223 | 80 | 2 | 1 | 218 | 8 | 230 | 3.12e-83 | 247 |
| MS.gene89248.t1 | MTR_4g019780 | 56.881 | 218 | 88 | 3 | 2 | 214 | 3 | 219 | 1.41e-81 | 243 |
| MS.gene89248.t1 | MTR_6g080440 | 46.154 | 208 | 106 | 3 | 7 | 209 | 3 | 209 | 1.38e-59 | 187 |
| MS.gene89248.t1 | MTR_3g099757 | 46.606 | 221 | 112 | 3 | 5 | 220 | 3 | 222 | 1.45e-56 | 179 |
| MS.gene89248.t1 | MTR_8g087410 | 40.541 | 222 | 126 | 3 | 5 | 221 | 4 | 224 | 2.89e-56 | 178 |
| MS.gene89248.t1 | MTR_8g087425 | 43.662 | 213 | 114 | 3 | 5 | 212 | 3 | 214 | 1.03e-52 | 169 |
| MS.gene89248.t1 | MTR_1g090150 | 43.458 | 214 | 112 | 4 | 6 | 212 | 2 | 213 | 4.33e-52 | 168 |
| MS.gene89248.t1 | MTR_1g090070 | 41.892 | 222 | 120 | 4 | 7 | 220 | 9 | 229 | 4.73e-52 | 168 |
| MS.gene89248.t1 | MTR_5g040430 | 40.991 | 222 | 119 | 4 | 1 | 211 | 1 | 221 | 1.46e-51 | 166 |
| MS.gene89248.t1 | MTR_1g090060 | 41.981 | 212 | 111 | 4 | 7 | 209 | 3 | 211 | 2.06e-50 | 164 |
| MS.gene89248.t1 | MTR_1g115195 | 44.828 | 203 | 101 | 4 | 7 | 200 | 3 | 203 | 3.24e-49 | 160 |
| MS.gene89248.t1 | MTR_1g090100 | 42.180 | 211 | 112 | 4 | 8 | 210 | 3 | 211 | 3.68e-47 | 155 |
| MS.gene89248.t1 | MTR_4g059730 | 38.967 | 213 | 120 | 4 | 6 | 210 | 3 | 213 | 2.01e-46 | 153 |
| MS.gene89248.t1 | MTR_5g037380 | 40.090 | 222 | 121 | 3 | 7 | 216 | 5 | 226 | 1.27e-45 | 151 |
| MS.gene89248.t1 | MTR_2g070130 | 42.927 | 205 | 108 | 6 | 6 | 204 | 3 | 204 | 7.76e-45 | 149 |
| MS.gene89248.t1 | MTR_1g090090 | 40.000 | 210 | 116 | 4 | 7 | 208 | 3 | 210 | 1.18e-44 | 149 |
| MS.gene89248.t1 | MTR_2g070150 | 48.148 | 162 | 79 | 4 | 6 | 165 | 3 | 161 | 2.39e-44 | 147 |
| MS.gene89248.t1 | MTR_2g070140 | 39.796 | 196 | 109 | 5 | 20 | 209 | 1 | 193 | 2.96e-42 | 142 |
| MS.gene89248.t1 | MTR_2g070210 | 37.850 | 214 | 122 | 6 | 6 | 211 | 3 | 213 | 1.09e-41 | 141 |
| MS.gene89248.t1 | MTR_3g467420 | 41.117 | 197 | 111 | 5 | 16 | 208 | 18 | 213 | 2.36e-41 | 140 |
| MS.gene89248.t1 | MTR_2g070200 | 38.813 | 219 | 125 | 6 | 6 | 217 | 3 | 219 | 6.53e-41 | 139 |
| MS.gene89248.t1 | MTR_4g124130 | 44.737 | 190 | 95 | 6 | 4 | 186 | 1 | 187 | 1.57e-40 | 138 |
| MS.gene89248.t1 | MTR_8g056940 | 48.148 | 162 | 79 | 4 | 6 | 165 | 3 | 161 | 1.84e-40 | 138 |
| MS.gene89248.t1 | MTR_8g061950 | 39.048 | 210 | 116 | 4 | 7 | 204 | 5 | 214 | 6.42e-40 | 137 |
| MS.gene89248.t1 | MTR_2g070180 | 37.561 | 205 | 119 | 5 | 6 | 204 | 3 | 204 | 9.56e-39 | 133 |
| MS.gene89248.t1 | MTR_3g467430 | 37.799 | 209 | 121 | 5 | 6 | 208 | 8 | 213 | 2.25e-38 | 132 |
| MS.gene89248.t1 | MTR_2g070120 | 36.946 | 203 | 123 | 4 | 6 | 204 | 3 | 204 | 2.29e-38 | 132 |
| MS.gene89248.t1 | MTR_2g070070 | 36.406 | 217 | 129 | 5 | 7 | 217 | 4 | 217 | 7.47e-38 | 131 |
| MS.gene89248.t1 | MTR_2g070060 | 36.058 | 208 | 124 | 5 | 7 | 208 | 4 | 208 | 4.96e-37 | 129 |
| MS.gene89248.t1 | MTR_5g076900 | 38.164 | 207 | 123 | 4 | 6 | 208 | 5 | 210 | 6.66e-36 | 126 |
| MS.gene89248.t1 | MTR_0186s0030 | 47.143 | 140 | 72 | 2 | 6 | 144 | 3 | 141 | 1.70e-34 | 120 |
| MS.gene89248.t1 | MTR_2g070110 | 37.981 | 208 | 119 | 6 | 7 | 208 | 4 | 207 | 4.50e-34 | 121 |
| MS.gene89248.t1 | MTR_2g072120 | 40.580 | 69 | 39 | 2 | 51 | 118 | 2 | 69 | 1.77e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89248.t1 | AT3G09270 | 51.131 | 221 | 100 | 5 | 5 | 218 | 4 | 223 | 1.61e-68 | 209 |
| MS.gene89248.t1 | AT2G29420 | 45.000 | 220 | 115 | 3 | 6 | 220 | 8 | 226 | 4.55e-64 | 198 |
| MS.gene89248.t1 | AT2G29450 | 44.749 | 219 | 112 | 4 | 6 | 215 | 5 | 223 | 2.58e-54 | 173 |
| MS.gene89248.t1 | AT2G29480 | 45.815 | 227 | 107 | 6 | 1 | 215 | 1 | 223 | 1.31e-53 | 172 |
| MS.gene89248.t1 | AT2G29460 | 45.370 | 216 | 111 | 4 | 1 | 210 | 1 | 215 | 1.63e-53 | 171 |
| MS.gene89248.t1 | AT2G29490 | 43.750 | 224 | 119 | 4 | 1 | 218 | 1 | 223 | 1.67e-53 | 171 |
| MS.gene89248.t1 | AT2G29470 | 41.333 | 225 | 124 | 5 | 1 | 218 | 1 | 224 | 8.26e-52 | 167 |
| MS.gene89248.t1 | AT2G29440 | 40.909 | 220 | 123 | 4 | 5 | 218 | 4 | 222 | 8.02e-49 | 159 |
| MS.gene89248.t1 | AT1G10370 | 41.706 | 211 | 110 | 4 | 1 | 200 | 1 | 209 | 1.91e-46 | 153 |
| MS.gene89248.t1 | AT1G59700 | 44.348 | 230 | 113 | 7 | 6 | 220 | 5 | 234 | 2.30e-46 | 154 |
| MS.gene89248.t1 | AT1G59670 | 41.704 | 223 | 115 | 6 | 6 | 213 | 5 | 227 | 2.47e-46 | 153 |
| MS.gene89248.t1 | AT1G27140 | 39.111 | 225 | 120 | 5 | 3 | 212 | 2 | 224 | 8.05e-45 | 150 |
| MS.gene89248.t1 | AT1G69930 | 38.991 | 218 | 121 | 5 | 5 | 210 | 10 | 227 | 1.87e-44 | 149 |
| MS.gene89248.t1 | AT1G78340 | 48.810 | 168 | 83 | 3 | 6 | 171 | 3 | 169 | 1.10e-43 | 146 |
| MS.gene89248.t1 | AT1G10360 | 38.835 | 206 | 115 | 4 | 6 | 200 | 4 | 209 | 3.83e-43 | 145 |
| MS.gene89248.t1 | AT1G27130 | 38.288 | 222 | 125 | 5 | 3 | 212 | 2 | 223 | 8.07e-43 | 144 |
| MS.gene89248.t1 | AT1G78320 | 38.605 | 215 | 123 | 5 | 4 | 212 | 1 | 212 | 1.63e-42 | 143 |
| MS.gene89248.t1 | AT1G78370 | 40.887 | 203 | 115 | 5 | 10 | 208 | 7 | 208 | 1.82e-42 | 143 |
| MS.gene89248.t1 | AT1G17170 | 39.352 | 216 | 125 | 5 | 6 | 217 | 3 | 216 | 8.38e-42 | 141 |
| MS.gene89248.t1 | AT1G78380 | 40.686 | 204 | 112 | 5 | 7 | 204 | 4 | 204 | 5.75e-41 | 139 |
| MS.gene89248.t1 | AT1G17180 | 40.394 | 203 | 116 | 5 | 6 | 204 | 3 | 204 | 2.03e-40 | 138 |
| MS.gene89248.t1 | AT1G53680 | 36.967 | 211 | 128 | 5 | 1 | 206 | 1 | 211 | 8.86e-39 | 134 |
| MS.gene89248.t1 | AT1G78360 | 39.535 | 215 | 117 | 7 | 1 | 208 | 1 | 209 | 1.03e-37 | 131 |
| MS.gene89248.t1 | AT1G69920 | 37.799 | 209 | 118 | 5 | 5 | 201 | 32 | 240 | 1.74e-37 | 131 |
| MS.gene89248.t1 | AT5G62480 | 39.269 | 219 | 114 | 7 | 4 | 204 | 1 | 218 | 4.66e-37 | 130 |
| MS.gene89248.t1 | AT1G17190 | 38.710 | 186 | 109 | 5 | 5 | 186 | 3 | 187 | 4.67e-36 | 127 |
| MS.gene89248.t1 | AT3G43800 | 38.537 | 205 | 117 | 7 | 5 | 201 | 3 | 206 | 1.88e-35 | 125 |
| MS.gene89248.t1 | AT1G74590 | 35.961 | 203 | 117 | 5 | 7 | 198 | 7 | 207 | 4.25e-31 | 114 |
| MS.gene89248.t1 | AT1G78320 | 32.039 | 206 | 106 | 5 | 4 | 204 | 1 | 177 | 8.29e-26 | 99.8 |
| MS.gene89248.t1 | AT5G62480 | 31.651 | 218 | 105 | 7 | 4 | 204 | 1 | 191 | 3.45e-20 | 85.5 |
| MS.gene89248.t1 | AT5G62480 | 31.651 | 218 | 106 | 7 | 4 | 204 | 1 | 192 | 3.67e-20 | 85.1 |
Find 37 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATATAATCCAGTTTAT+AGG | 0.238084 | 7.1:-36926581 | MS.gene89248:CDS |
| ACTGTTTCTCTGCTACTTCT+TGG | 0.238294 | 7.1:+36924825 | None:intergenic |
| CCTTCAAAGGAACAACAATT+TGG | 0.250973 | 7.1:-36924722 | MS.gene89248:CDS |
| GTTCCTGTTCTTGTTCATAA+TGG | 0.264740 | 7.1:-36926555 | MS.gene89248:CDS |
| GAGCTGAAGGACAAGTTCTT+TGG | 0.294063 | 7.1:-36924899 | MS.gene89248:CDS |
| AAAGAGCCTTGGATCGGTTT+TGG | 0.296896 | 7.1:-36926446 | MS.gene89248:CDS |
| TGATGAAGAAGTTCAGCTTT+TGG | 0.304952 | 7.1:-36926712 | MS.gene89248:CDS |
| CCAAATTGTTGTTCCTTTGA+AGG | 0.337895 | 7.1:+36924722 | None:intergenic |
| TTCCTGTTCTTGTTCATAAT+GGG | 0.343118 | 7.1:-36926554 | MS.gene89248:CDS |
| ATCACACGTGACTCTGAAAT+AGG | 0.363430 | 7.1:+36926528 | None:intergenic |
| TAAGGATCAGAAGGTAAGAT+TGG | 0.370607 | 7.1:+36926471 | None:intergenic |
| ACAGGAACCATCCTATAAAC+TGG | 0.382808 | 7.1:+36926570 | None:intergenic |
| TTCTCGCGCTCTTTCTCATC+AGG | 0.391480 | 7.1:+36924965 | None:intergenic |
| ATTTGAACTCTTATCACAAA+TGG | 0.402550 | 7.1:+36926675 | None:intergenic |
| GTCAAAGTTCATAGATGAAA+AGG | 0.412601 | 7.1:-36926424 | MS.gene89248:intron |
| TTCTTTGGAGGACAAGAGAT+TGG | 0.418946 | 7.1:-36924884 | MS.gene89248:CDS |
| TTGAGTATATTGATGAAGCT+TGG | 0.430723 | 7.1:-36926503 | MS.gene89248:CDS |
| TTCCCATTATGAACAAGAAC+AGG | 0.453502 | 7.1:+36926552 | None:intergenic |
| AGGACAAGAGATTGGCTTTG+TGG | 0.456715 | 7.1:-36924876 | MS.gene89248:CDS |
| CTGCTACTTCTTGGAACAAA+GGG | 0.461591 | 7.1:+36924834 | None:intergenic |
| AGTTTGGGAAATTTGTCAGC+AGG | 0.485349 | 7.1:+36924797 | None:intergenic |
| CAAATTGCTCTGAAATTGAA+AGG | 0.502815 | 7.1:-36926657 | MS.gene89248:CDS |
| GGCTCGTGAAGAACTATTCG+AGG | 0.504369 | 7.1:-36924942 | MS.gene89248:CDS |
| GGCATAACTTCTTTGACGAC+TGG | 0.505487 | 7.1:+36924743 | None:intergenic |
| TGATCCTTACAAAAGAGCCT+TGG | 0.505541 | 7.1:-36926457 | MS.gene89248:CDS |
| CTGAAGGACAAGTTCTTTGG+AGG | 0.513642 | 7.1:-36924896 | MS.gene89248:CDS |
| CAAAGAAGTTATGCCTTCAA+AGG | 0.523092 | 7.1:-36924735 | MS.gene89248:CDS |
| TAACTTCTTTGACGACTGGA+TGG | 0.546537 | 7.1:+36924747 | None:intergenic |
| TCTGCTACTTCTTGGAACAA+AGG | 0.549415 | 7.1:+36924833 | None:intergenic |
| AGGAATTGAACACAAATATG+TGG | 0.552045 | 7.1:-36926637 | MS.gene89248:CDS |
| GTTTGGGAAATTTGTCAGCA+GGG | 0.565750 | 7.1:+36924798 | None:intergenic |
| GTTTCTTGAGAATGAGCTGA+AGG | 0.580852 | 7.1:-36924912 | MS.gene89248:CDS |
| CTTACAAAAGAGCCTTGGAT+CGG | 0.586658 | 7.1:-36926452 | MS.gene89248:CDS |
| ATATAATCCAGTTTATAGGA+TGG | 0.598989 | 7.1:-36926577 | MS.gene89248:CDS |
| TGATGAGAAAGAGCGCGAGA+AGG | 0.601244 | 7.1:-36924963 | MS.gene89248:CDS |
| ATCAGTGTACGATTGCTGCA+TGG | 0.617894 | 7.1:-36925003 | MS.gene89248:intron |
| CTTTGACCAAAACCGATCCA+AGG | 0.633516 | 7.1:+36926440 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTCTATTTATTTATGTTA+TGG | + | chr7.1:36925434-36925453 | None:intergenic | 15.0% |
| !! | ATTTCATTCATGAATTATAT+CGG | - | chr7.1:36925198-36925217 | MS.gene89248:intron | 15.0% |
| !! | GTTCTATTTATTTATGTTAT+GGG | + | chr7.1:36925433-36925452 | None:intergenic | 15.0% |
| !!! | AATTTCACCAAATTTTTTAA+TGG | + | chr7.1:36925181-36925200 | None:intergenic | 15.0% |
| !! | AAAAATGAAATACAAAACAC+AGG | + | chr7.1:36925899-36925918 | None:intergenic | 20.0% |
| !! | CATAACTAAATTTGATCAAT+TGG | + | chr7.1:36925595-36925614 | None:intergenic | 20.0% |
| !! | TCAAATATAATCCAGTTTAT+AGG | - | chr7.1:36924818-36924837 | MS.gene89248:CDS | 20.0% |
| !! | TTATTTATGTTATGGGTTTA+GGG | + | chr7.1:36925426-36925445 | None:intergenic | 20.0% |
| !! | TTTATTTATGTTATGGGTTT+AGG | + | chr7.1:36925427-36925446 | None:intergenic | 20.0% |
| !!! | CAATTTTCTTTTAACTATAC+TGG | - | chr7.1:36925529-36925548 | MS.gene89248:intron | 20.0% |
| ! | AAATATGTGGAAGAAAAACT+GGG | - | chr7.1:36924775-36924794 | MS.gene89248:CDS | 25.0% |
| ! | ATATAATCCAGTTTATAGGA+TGG | - | chr7.1:36924822-36924841 | MS.gene89248:CDS | 25.0% |
| ! | ATCAGTAAGAAACAAATATG+TGG | + | chr7.1:36926057-36926076 | None:intergenic | 25.0% |
| ! | ATCTTAACAAACGTTTAAAG+TGG | + | chr7.1:36925620-36925639 | None:intergenic | 25.0% |
| ! | ATTTGAACTCTTATCACAAA+TGG | + | chr7.1:36924727-36924746 | None:intergenic | 25.0% |
| ! | CAAATTCATAGATAATCACA+TGG | + | chr7.1:36926238-36926257 | None:intergenic | 25.0% |
| ! | CTGTCAACCATTAAAAAATT+TGG | - | chr7.1:36925171-36925190 | MS.gene89248:intron | 25.0% |
| ! | GATAGTATACATCTCATAAA+AGG | + | chr7.1:36925031-36925050 | None:intergenic | 25.0% |
| !! | GTTAAGATGTTCAGATTTTA+AGG | - | chr7.1:36925632-36925651 | MS.gene89248:intron | 25.0% |
| !! | TTTGTTTCTTACTGATGTAA+TGG | - | chr7.1:36926061-36926080 | MS.gene89248:intron | 25.0% |
| !!! | AATTTTTTAATGGTTGACAG+TGG | + | chr7.1:36925171-36925190 | None:intergenic | 25.0% |
| !!! | GTATTTCGAGTTATAGAAAT+GGG | + | chr7.1:36925978-36925997 | None:intergenic | 25.0% |
| !!! | TCTACTTTAGAATGAATGTT+TGG | - | chr7.1:36925824-36925843 | MS.gene89248:intron | 25.0% |
| !!! | TGTATTTCGAGTTATAGAAA+TGG | + | chr7.1:36925979-36925998 | None:intergenic | 25.0% |
| AAAGTTCACATTTAGTGACA+TGG | + | chr7.1:36926334-36926353 | None:intergenic | 30.0% | |
| AACCAAACATACAGTAGTAT+AGG | - | chr7.1:36925862-36925881 | MS.gene89248:intron | 30.0% | |
| AATTTCCCAAACTGCAAAAA+TGG | - | chr7.1:36926612-36926631 | MS.gene89248:CDS | 30.0% | |
| AGGAATTGAACACAAATATG+TGG | - | chr7.1:36924762-36924781 | MS.gene89248:CDS | 30.0% | |
| CAAATATGTGGAAGAAAAAC+TGG | - | chr7.1:36924774-36924793 | MS.gene89248:CDS | 30.0% | |
| GATGTAATGGTAAGGTTATA+AGG | - | chr7.1:36926074-36926093 | MS.gene89248:intron | 30.0% | |
| GTCAAAGTTCATAGATGAAA+AGG | - | chr7.1:36924975-36924994 | MS.gene89248:CDS | 30.0% | |
| TAACTGCTCTATAATCGTAA+AGG | - | chr7.1:36925455-36925474 | MS.gene89248:intron | 30.0% | |
| TTCCTGTTCTTGTTCATAAT+GGG | - | chr7.1:36924845-36924864 | MS.gene89248:CDS | 30.0% | |
| TTCTTACTGATGTAATGGTA+AGG | - | chr7.1:36926066-36926085 | MS.gene89248:intron | 30.0% | |
| TTGAGTATATTGATGAAGCT+TGG | - | chr7.1:36924896-36924915 | MS.gene89248:CDS | 30.0% | |
| !! | CAAATTGCTCTGAAATTGAA+AGG | - | chr7.1:36924742-36924761 | MS.gene89248:CDS | 30.0% |
| !! | CAGTGGACTATATGTTAAAT+TGG | + | chr7.1:36925154-36925173 | None:intergenic | 30.0% |
| !! | TAATTCGTGTCGTTTGTTAT+GGG | + | chr7.1:36926121-36926140 | None:intergenic | 30.0% |
| !! | TTGGTTTTTAAAAGATGCAG+TGG | - | chr7.1:36925939-36925958 | MS.gene89248:intron | 30.0% |
| AGAAAACAAGAGAAGATCCT+TGG | - | chr7.1:36926006-36926025 | MS.gene89248:intron | 35.0% | |
| ATGGTAGATGAATTCTAGCA+TGG | + | chr7.1:36926315-36926334 | None:intergenic | 35.0% | |
| CAAAGAAGTTATGCCTTCAA+AGG | - | chr7.1:36926664-36926683 | MS.gene89248:CDS | 35.0% | |
| CCTTCAAAGGAACAACAATT+TGG | - | chr7.1:36926677-36926696 | MS.gene89248:CDS | 35.0% | |
| CTCATATATAGACACAGAAG+AGG | - | chr7.1:36925243-36925262 | MS.gene89248:intron | 35.0% | |
| CTCCTATACTACTGTATGTT+TGG | + | chr7.1:36925867-36925886 | None:intergenic | 35.0% | |
| GTTCCTGTTCTTGTTCATAA+TGG | - | chr7.1:36924844-36924863 | MS.gene89248:CDS | 35.0% | |
| TAAGGATCAGAAGGTAAGAT+TGG | + | chr7.1:36924931-36924950 | None:intergenic | 35.0% | |
| TTCCCATTATGAACAAGAAC+AGG | + | chr7.1:36924850-36924869 | None:intergenic | 35.0% | |
| ! | CCAAATTGTTGTTCCTTTGA+AGG | + | chr7.1:36926680-36926699 | None:intergenic | 35.0% |
| ! | GATGAAGAAGTTCAGCTTTT+GGG | - | chr7.1:36924688-36924707 | MS.gene89248:CDS | 35.0% |
| ! | TGATGAAGAAGTTCAGCTTT+TGG | - | chr7.1:36924687-36924706 | MS.gene89248:CDS | 35.0% |
| !! | AGACTCCATTTTTGCAGTTT+GGG | + | chr7.1:36926620-36926639 | None:intergenic | 35.0% |
| !! | CTAATTCGTGTCGTTTGTTA+TGG | + | chr7.1:36926122-36926141 | None:intergenic | 35.0% |
| !! | TAGACTCCATTTTTGCAGTT+TGG | + | chr7.1:36926621-36926640 | None:intergenic | 35.0% |
| !! | TCAAGGGTATTGCTGTAATT+TGG | - | chr7.1:36925399-36925418 | MS.gene89248:intron | 35.0% |
| AATTGAGCCTAACACACGTT+CGG | + | chr7.1:36925340-36925359 | None:intergenic | 40.0% | |
| ACAGGAACCATCCTATAAAC+TGG | + | chr7.1:36924832-36924851 | None:intergenic | 40.0% | |
| AGCATGGATCACACATTATG+TGG | + | chr7.1:36926299-36926318 | None:intergenic | 40.0% | |
| AGTTTGGGAAATTTGTCAGC+AGG | + | chr7.1:36926605-36926624 | None:intergenic | 40.0% | |
| ATCGTAAAGGTAAGCACCAT+TGG | - | chr7.1:36925468-36925487 | MS.gene89248:intron | 40.0% | |
| CTTACAAAAGAGCCTTGGAT+CGG | - | chr7.1:36924947-36924966 | MS.gene89248:CDS | 40.0% | |
| CTTGACACACTTACACAACT+TGG | - | chr7.1:36925920-36925939 | MS.gene89248:intron | 40.0% | |
| GTGTTAGGCTCAATTCATGT+TGG | - | chr7.1:36925345-36925364 | MS.gene89248:intron | 40.0% | |
| GTTTCTTGAGAATGAGCTGA+AGG | - | chr7.1:36926487-36926506 | MS.gene89248:CDS | 40.0% | |
| GTTTGGGAAATTTGTCAGCA+GGG | + | chr7.1:36926604-36926623 | None:intergenic | 40.0% | |
| TAACTTCTTTGACGACTGGA+TGG | + | chr7.1:36926655-36926674 | None:intergenic | 40.0% | |
| TAGGCTCAATTCATGTTGGA+GGG | - | chr7.1:36925349-36925368 | MS.gene89248:intron | 40.0% | |
| TGATCCTTACAAAAGAGCCT+TGG | - | chr7.1:36924942-36924961 | MS.gene89248:CDS | 40.0% | |
| TTAGGCTCAATTCATGTTGG+AGG | - | chr7.1:36925348-36925367 | MS.gene89248:intron | 40.0% | |
| ! | ACTGTTTCTCTGCTACTTCT+TGG | + | chr7.1:36926577-36926596 | None:intergenic | 40.0% |
| ! | CTGCTACTTCTTGGAACAAA+GGG | + | chr7.1:36926568-36926587 | None:intergenic | 40.0% |
| ! | GCTCTTTTGTAAGGATCAGA+AGG | + | chr7.1:36924940-36924959 | None:intergenic | 40.0% |
| ! | TCTGCTACTTCTTGGAACAA+AGG | + | chr7.1:36926569-36926588 | None:intergenic | 40.0% |
| ! | TTCTTTGGAGGACAAGAGAT+TGG | - | chr7.1:36926515-36926534 | MS.gene89248:CDS | 40.0% |
| !! | ATCACACGTGACTCTGAAAT+AGG | + | chr7.1:36924874-36924893 | None:intergenic | 40.0% |
| ATCAGTGTACGATTGCTGCA+TGG | - | chr7.1:36926396-36926415 | MS.gene89248:intron | 45.0% | |
| CTGAAGGACAAGTTCTTTGG+AGG | - | chr7.1:36926503-36926522 | MS.gene89248:CDS | 45.0% | |
| CTTTGACCAAAACCGATCCA+AGG | + | chr7.1:36924962-36924981 | None:intergenic | 45.0% | |
| GAGCTGAAGGACAAGTTCTT+TGG | - | chr7.1:36926500-36926519 | MS.gene89248:CDS | 45.0% | |
| GGCATAACTTCTTTGACGAC+TGG | + | chr7.1:36926659-36926678 | None:intergenic | 45.0% | |
| ! | CGATCCAAGGCTCTTTTGTA+AGG | + | chr7.1:36924949-36924968 | None:intergenic | 45.0% |
| !! | AAAGAGCCTTGGATCGGTTT+TGG | - | chr7.1:36924953-36924972 | MS.gene89248:CDS | 45.0% |
| !! | AGGACAAGAGATTGGCTTTG+TGG | - | chr7.1:36926523-36926542 | MS.gene89248:CDS | 45.0% |
| !!! | AGTTCAGCTTTTGGGTTCAG+TGG | - | chr7.1:36924696-36924715 | MS.gene89248:CDS | 45.0% |
| !!! | GTTCAGCTTTTGGGTTCAGT+GGG | - | chr7.1:36924697-36924716 | MS.gene89248:CDS | 45.0% |
| AAACACTGTCTCCACTGCCA+AGG | + | chr7.1:36926026-36926045 | None:intergenic | 50.0% | |
| CAAGAGAAGATCCTTGGCAG+TGG | - | chr7.1:36926012-36926031 | MS.gene89248:intron | 50.0% | |
| CATGTTGGAGGGAGACTAGT+GGG | - | chr7.1:36925360-36925379 | MS.gene89248:intron | 50.0% | |
| GCACAATCACAGCAGTCACA+TGG | + | chr7.1:36925053-36925072 | None:intergenic | 50.0% | |
| GGCTCGTGAAGAACTATTCG+AGG | - | chr7.1:36926457-36926476 | MS.gene89248:CDS | 50.0% | |
| TCATGTTGGAGGGAGACTAG+TGG | - | chr7.1:36925359-36925378 | MS.gene89248:intron | 50.0% | |
| TGTTCACGCAGTTCAGCCAA+TGG | + | chr7.1:36925487-36925506 | None:intergenic | 50.0% | |
| TTCTCGCGCTCTTTCTCATC+AGG | + | chr7.1:36926437-36926456 | None:intergenic | 50.0% | |
| ! | ATAGACACAGAAGAGGCGCA+AGG | - | chr7.1:36925250-36925269 | MS.gene89248:intron | 50.0% |
| ! | TAGACACAGAAGAGGCGCAA+GGG | - | chr7.1:36925251-36925270 | MS.gene89248:intron | 50.0% |
| ! | TGATGAGAAAGAGCGCGAGA+AGG | - | chr7.1:36926436-36926455 | MS.gene89248:CDS | 50.0% |
| GTTTGGGCCGAACGTGTGTT+AGG | - | chr7.1:36925330-36925349 | MS.gene89248:intron | 55.0% | |
| ! | AGACACAGAAGAGGCGCAAG+GGG | - | chr7.1:36925252-36925271 | MS.gene89248:intron | 55.0% |
| !! | TTCAGGTGGCGTCGGTTCAA+GGG | - | chr7.1:36925383-36925402 | MS.gene89248:intron | 55.0% |
| ACACGTTCGGCCCAAACGCA+AGG | + | chr7.1:36925327-36925346 | None:intergenic | 60.0% | |
| CAAACGCAAGGACAGGGGGA+GGG | + | chr7.1:36925315-36925334 | None:intergenic | 60.0% | |
| CTCCCCCTGTCCTTGCGTTT+GGG | - | chr7.1:36925314-36925333 | MS.gene89248:intron | 60.0% | |
| TCGGCCCAAACGCAAGGACA+GGG | + | chr7.1:36925321-36925340 | None:intergenic | 60.0% | |
| TTCGGCCCAAACGCAAGGAC+AGG | + | chr7.1:36925322-36925341 | None:intergenic | 60.0% | |
| !! | CTAGTGGGTTCAGGTGGCGT+CGG | - | chr7.1:36925375-36925394 | MS.gene89248:intron | 60.0% |
| !! | GGAGGGAGACTAGTGGGTTC+AGG | - | chr7.1:36925366-36925385 | MS.gene89248:intron | 60.0% |
| !! | GGGAGACTAGTGGGTTCAGG+TGG | - | chr7.1:36925369-36925388 | MS.gene89248:intron | 60.0% |
| !! | GTTCAGGTGGCGTCGGTTCA+AGG | - | chr7.1:36925382-36925401 | MS.gene89248:intron | 60.0% |
| ACAGGGGGAGGGAGCTTTGC+AGG | + | chr7.1:36925304-36925323 | None:intergenic | 65.0% | |
| CAGGGGGAGGGAGCTTTGCA+GGG | + | chr7.1:36925303-36925322 | None:intergenic | 65.0% | |
| CCAAACGCAAGGACAGGGGG+AGG | + | chr7.1:36925316-36925335 | None:intergenic | 65.0% | |
| CCTCCCCCTGTCCTTGCGTT+TGG | - | chr7.1:36925313-36925332 | MS.gene89248:intron | 65.0% | |
| CGGCCCAAACGCAAGGACAG+GGG | + | chr7.1:36925320-36925339 | None:intergenic | 65.0% | |
| GGCCCAAACGCAAGGACAGG+GGG | + | chr7.1:36925319-36925338 | None:intergenic | 65.0% | |
| ! | CACAGAAGAGGCGCAAGGGG+TGG | - | chr7.1:36925255-36925274 | MS.gene89248:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 36924676 | 36926745 | 36924676 | ID=MS.gene89248 |
| chr7.1 | mRNA | 36924676 | 36926745 | 36924676 | ID=MS.gene89248.t1;Parent=MS.gene89248 |
| chr7.1 | exon | 36926425 | 36926745 | 36926425 | ID=MS.gene89248.t1.exon1;Parent=MS.gene89248.t1 |
| chr7.1 | CDS | 36926425 | 36926745 | 36926425 | ID=cds.MS.gene89248.t1;Parent=MS.gene89248.t1 |
| chr7.1 | exon | 36924676 | 36925020 | 36924676 | ID=MS.gene89248.t1.exon2;Parent=MS.gene89248.t1 |
| chr7.1 | CDS | 36924676 | 36925020 | 36924676 | ID=cds.MS.gene89248.t1;Parent=MS.gene89248.t1 |
| Gene Sequence |
| Protein sequence |
