Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63991.t1 | XP_013466170.1 | 97.7 | 426 | 9 | 1 | 1 | 425 | 1 | 426 | 2.80E-226 | 794.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63991.t1 | A0A072VF27 | 97.7 | 426 | 9 | 1 | 1 | 425 | 1 | 426 | 2.0e-226 | 794.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050657 | MS.gene63991 | 0.815909 | 7.26E-52 | -1.69E-46 |
| MS.gene051572 | MS.gene63991 | 0.80132 | 9.52E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene63991 | 0.844269 | 8.39E-59 | -1.69E-46 |
| MS.gene054584 | MS.gene63991 | 0.840657 | 7.62E-58 | -1.69E-46 |
| MS.gene056538 | MS.gene63991 | 0.815642 | 8.33E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42277 | MS.gene63991 | PPI |
| MS.gene27044 | MS.gene63991 | PPI |
| MS.gene064739 | MS.gene63991 | PPI |
| MS.gene63991 | MS.gene35128 | PPI |
| MS.gene63991 | MS.gene69420 | PPI |
| MS.gene63991 | MS.gene028330 | PPI |
| MS.gene023122 | MS.gene63991 | PPI |
| MS.gene36460 | MS.gene63991 | PPI |
| MS.gene63991 | MS.gene014442 | PPI |
| MS.gene63991 | MS.gene64194 | PPI |
| MS.gene63991 | MS.gene24186 | PPI |
| MS.gene63991 | MS.gene069406 | PPI |
| MS.gene69420 | MS.gene63991 | PPI |
| MS.gene24186 | MS.gene63991 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63991.t1 | MTR_1g024005 | 98.592 | 426 | 5 | 1 | 1 | 425 | 1 | 426 | 0.0 | 858 |
| MS.gene63991.t1 | MTR_3g113270 | 76.168 | 428 | 90 | 5 | 1 | 424 | 1 | 420 | 0.0 | 659 |
| MS.gene63991.t1 | MTR_3g071050 | 73.333 | 270 | 65 | 3 | 29 | 296 | 1 | 265 | 2.31e-140 | 402 |
| MS.gene63991.t1 | MTR_2g028610 | 37.383 | 428 | 231 | 8 | 30 | 423 | 34 | 458 | 2.44e-92 | 286 |
| MS.gene63991.t1 | MTR_2g028590 | 38.118 | 425 | 226 | 8 | 33 | 423 | 42 | 463 | 4.43e-92 | 286 |
| MS.gene63991.t1 | MTR_5g077710 | 44.127 | 315 | 162 | 7 | 119 | 424 | 76 | 385 | 1.08e-89 | 277 |
| MS.gene63991.t1 | MTR_8g028460 | 40.483 | 331 | 176 | 7 | 108 | 424 | 164 | 487 | 6.48e-80 | 255 |
| MS.gene63991.t1 | MTR_0010s0400 | 39.198 | 324 | 180 | 7 | 108 | 425 | 147 | 459 | 8.27e-78 | 249 |
| MS.gene63991.t1 | MTR_3g070620 | 76.471 | 136 | 29 | 2 | 227 | 360 | 54 | 188 | 2.63e-67 | 213 |
| MS.gene63991.t1 | MTR_4g094572 | 33.333 | 414 | 225 | 8 | 19 | 423 | 4 | 375 | 7.21e-65 | 213 |
| MS.gene63991.t1 | MTR_3g071100 | 68.293 | 41 | 12 | 1 | 207 | 247 | 24 | 63 | 1.03e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63991.t1 | AT3G27230 | 72.941 | 425 | 100 | 4 | 1 | 425 | 1 | 410 | 0.0 | 632 |
| MS.gene63991.t1 | AT5G40830 | 69.718 | 426 | 114 | 5 | 1 | 424 | 1 | 413 | 0.0 | 612 |
| MS.gene63991.t1 | AT5G40830 | 69.718 | 426 | 114 | 5 | 1 | 424 | 1 | 413 | 0.0 | 612 |
| MS.gene63991.t1 | AT5G40830 | 63.380 | 426 | 101 | 5 | 1 | 424 | 1 | 373 | 0.0 | 541 |
| MS.gene63991.t1 | AT3G05390 | 32.969 | 458 | 241 | 12 | 23 | 425 | 16 | 462 | 1.01e-79 | 254 |
| MS.gene63991.t1 | AT4G01240 | 39.697 | 330 | 179 | 7 | 108 | 424 | 334 | 656 | 9.02e-75 | 246 |
| MS.gene63991.t1 | AT1G29790 | 41.554 | 296 | 153 | 6 | 131 | 423 | 98 | 376 | 7.66e-70 | 226 |
| MS.gene63991.t1 | AT1G29790 | 41.554 | 296 | 153 | 6 | 131 | 423 | 98 | 376 | 7.66e-70 | 226 |
Find 64 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCAGAAACTGATCTTAAA+AGG | 0.211099 | 1.4:-1037581 | MS.gene63991:CDS |
| TCAAACACATTGTCATAAAA+TGG | 0.248817 | 1.4:+1037107 | None:intergenic |
| GGTTCAGTTTCACTGAAAAT+TGG | 0.255151 | 1.4:-1038079 | MS.gene63991:CDS |
| GGAGAGAAAGTTGATAGTTT+TGG | 0.265881 | 1.4:-1036885 | MS.gene63991:CDS |
| TTTGATATTGGTGGTGGTTC+AGG | 0.273729 | 1.4:-1037263 | MS.gene63991:CDS |
| CTAAAGGAAGTTGATGTCTT+TGG | 0.285958 | 1.4:+1037735 | None:intergenic |
| TGCGGGCCGGTGGTTTGTTT+TGG | 0.291218 | 1.4:-1037001 | MS.gene63991:CDS |
| CTGGTGCTTGTCCTGATGAT+TGG | 0.293180 | 1.4:-1037610 | MS.gene63991:CDS |
| CAAAGACATCAACTTCCTTT+AGG | 0.332526 | 1.4:-1037734 | MS.gene63991:CDS |
| TTTACTTGAGCTTAGATCAT+AGG | 0.343285 | 1.4:-1037133 | MS.gene63991:CDS |
| GCAGCAATGAATTCACTAAA+TGG | 0.344054 | 1.4:+1037173 | None:intergenic |
| GGAAATGGTGGAATTAGAAT+AGG | 0.346150 | 1.4:-1037287 | MS.gene63991:CDS |
| TTCAGCTCATTTGCAATGTT+GGG | 0.356522 | 1.4:+1037767 | None:intergenic |
| CCATTCTTCAGAAACCAGTT+AGG | 0.362161 | 1.4:-1036833 | MS.gene63991:CDS |
| TTCATGAGTTACAAGGCTTC+TGG | 0.364603 | 1.4:-1037629 | MS.gene63991:CDS |
| GTTACTGTTGTTGGTGGTTG+TGG | 0.369532 | 1.4:+1037925 | None:intergenic |
| ATTAGAATAGGGTTTGATAT+TGG | 0.369699 | 1.4:-1037275 | MS.gene63991:CDS |
| TCTAACCTTCAACCCCTAAC+TGG | 0.373706 | 1.4:+1036819 | None:intergenic |
| GAAATGGTGGAATTAGAATA+GGG | 0.380459 | 1.4:-1037286 | MS.gene63991:CDS |
| TTGGATATAAGAAATTGAAA+TGG | 0.387064 | 1.4:-1036914 | MS.gene63991:CDS |
| ACAAGGTTGATTGAAAGGTT+TGG | 0.388153 | 1.4:-1036933 | MS.gene63991:CDS |
| TTAGGCAAGGATTCAAGAAC+TGG | 0.392044 | 1.4:-1037716 | MS.gene63991:CDS |
| TTTCAGCTCATTTGCAATGT+TGG | 0.396349 | 1.4:+1037766 | None:intergenic |
| TGGATATAAGAAATTGAAAT+GGG | 0.396901 | 1.4:-1036913 | MS.gene63991:CDS |
| AAGATTAAGGTTACTGTTGT+TGG | 0.413130 | 1.4:+1037916 | None:intergenic |
| AGAGGCTTCCAAAGAGAAAC+AGG | 0.426242 | 1.4:+1037491 | None:intergenic |
| GTTTCTCTTTGGAAGCCTCT+TGG | 0.431268 | 1.4:-1037488 | MS.gene63991:CDS |
| CTCTAACAAGGTTGATTGAA+AGG | 0.444624 | 1.4:-1036938 | MS.gene63991:CDS |
| TAAGAAATTGAAATGGGTTG+TGG | 0.451047 | 1.4:-1036907 | MS.gene63991:CDS |
| CATTCTTCAGAAACCAGTTA+GGG | 0.456557 | 1.4:-1036832 | MS.gene63991:CDS |
| AGAAACCAGTTAGGGGTTGA+AGG | 0.456670 | 1.4:-1036824 | None:intergenic |
| AAGAAATTGAAATGGGTTGT+GGG | 0.464176 | 1.4:-1036906 | MS.gene63991:CDS |
| AGCATAGAGAGCAAAGAGAT+TGG | 0.472679 | 1.4:+1037976 | None:intergenic |
| AAGGAAGTTGATGTCTTTGG+AGG | 0.474654 | 1.4:+1037738 | None:intergenic |
| AAACACCTTCTTCTTGGTAA+AGG | 0.474985 | 1.4:+1037551 | None:intergenic |
| GTTCTTGAATCCTTGCCTAA+AGG | 0.475247 | 1.4:+1037719 | None:intergenic |
| TGCATCAACATTAAGAGTAT+TGG | 0.482891 | 1.4:+1037196 | None:intergenic |
| CTCAGAAACTGATCTTAAAA+GGG | 0.485828 | 1.4:-1037580 | MS.gene63991:CDS |
| TGGAGGAAAAGCTGAAAAGT+TGG | 0.486068 | 1.4:-1037054 | MS.gene63991:CDS |
| AGAATAGGGTTTGATATTGG+TGG | 0.487533 | 1.4:-1037272 | MS.gene63991:CDS |
| AAGAACTGGGATCACTGAAA+TGG | 0.496871 | 1.4:-1037702 | MS.gene63991:CDS |
| TGATCTAAGCTCAAGTAAAG+TGG | 0.497485 | 1.4:+1037137 | None:intergenic |
| CCTAACTGGTTTCTGAAGAA+TGG | 0.500091 | 1.4:+1036833 | None:intergenic |
| ATAGGGTTTGATATTGGTGG+TGG | 0.514507 | 1.4:-1037269 | MS.gene63991:CDS |
| TGAGCTACACTCCAATCATC+AGG | 0.519786 | 1.4:+1037599 | None:intergenic |
| GATTCATGCATCAAGTGCAT+TGG | 0.520145 | 1.4:-1037081 | MS.gene63991:CDS |
| TCAAAAGAAACTAGCCCAGA+TGG | 0.525921 | 1.4:-1037831 | MS.gene63991:CDS |
| GTTTCACTGAAAATTGGAGA+TGG | 0.532703 | 1.4:-1038073 | MS.gene63991:CDS |
| GTCACAGTTCATGAGTTACA+AGG | 0.534645 | 1.4:-1037636 | MS.gene63991:CDS |
| TTCCAAAGAGAAACAGGAAA+AGG | 0.536142 | 1.4:+1037497 | None:intergenic |
| ATTAAGGTTACTGTTGTTGG+TGG | 0.540761 | 1.4:+1037919 | None:intergenic |
| ACATCAACTTCCTTTAGGCA+AGG | 0.546386 | 1.4:-1037729 | MS.gene63991:CDS |
| TGTTGTTGGTGGTTGTGGTG+TGG | 0.552926 | 1.4:+1037930 | None:intergenic |
| AGTGAATTCATTGCTGCTAG+AGG | 0.555907 | 1.4:-1037167 | MS.gene63991:CDS |
| GCATCAAGTGCATTGGATGT+TGG | 0.560273 | 1.4:-1037074 | MS.gene63991:CDS |
| GTGAGCCTTTACCAAGAAGA+AGG | 0.569775 | 1.4:-1037556 | MS.gene63991:CDS |
| ACTGAAATGGTGTCATCAGT+TGG | 0.572185 | 1.4:-1037689 | MS.gene63991:CDS |
| TTAAAAGTGTTATTACCAAG+AGG | 0.586025 | 1.4:+1037473 | None:intergenic |
| TGAGAATCAGAGATTTGTGA+AGG | 0.606302 | 1.4:-1037354 | MS.gene63991:CDS |
| ATCAAGCCAAAACAAACCAC+CGG | 0.614460 | 1.4:+1036995 | None:intergenic |
| TCAAGTGCATTGGATGTTGG+AGG | 0.648963 | 1.4:-1037071 | MS.gene63991:CDS |
| TAGGCAAGGATTCAAGAACT+GGG | 0.665439 | 1.4:-1037715 | MS.gene63991:CDS |
| AGAAGAAACAAACTCTAACA+AGG | 0.679763 | 1.4:-1036950 | MS.gene63991:CDS |
| ATTCTTCAGAAACCAGTTAG+GGG | 0.694148 | 1.4:-1036831 | MS.gene63991:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTAAAAATGATTTTT+TGG | - | chr1.4:1037579-1037598 | MS.gene63991:CDS | 10.0% |
| !! | TGGATATAAGAAATTGAAAT+GGG | - | chr1.4:1037996-1038015 | MS.gene63991:CDS | 20.0% |
| !! | TTGGATATAAGAAATTGAAA+TGG | - | chr1.4:1037995-1038014 | MS.gene63991:CDS | 20.0% |
| !!! | TTGGTAATAACACTTTTAAT+TGG | - | chr1.4:1037440-1037459 | MS.gene63991:CDS | 20.0% |
| !!! | TTGTGTAAATTGTTTTGATT+TGG | - | chr1.4:1037519-1037538 | MS.gene63991:CDS | 20.0% |
| ! | ATTAGAATAGGGTTTGATAT+TGG | - | chr1.4:1037634-1037653 | MS.gene63991:CDS | 25.0% |
| ! | TCAAAAACTGTTTCAAAATC+AGG | - | chr1.4:1037382-1037401 | MS.gene63991:CDS | 25.0% |
| ! | TCAAACACATTGTCATAAAA+TGG | + | chr1.4:1037805-1037824 | None:intergenic | 25.0% |
| !!! | AAGAGTTTTGAATGTTTGAA+AGG | - | chr1.4:1037478-1037497 | MS.gene63991:CDS | 25.0% |
| !!! | AATAACACTTTTAATTGGAG+TGG | - | chr1.4:1037445-1037464 | MS.gene63991:CDS | 25.0% |
| !!! | AATTGTTTTGATTTGGTTAG+TGG | - | chr1.4:1037526-1037545 | MS.gene63991:CDS | 25.0% |
| !!! | AGATGTTTTTGTGAAGATTA+AGG | + | chr1.4:1037009-1037028 | None:intergenic | 25.0% |
| !!! | TTAAAAGTGTTATTACCAAG+AGG | + | chr1.4:1037439-1037458 | None:intergenic | 25.0% |
| AAGATTAAGGTTACTGTTGT+TGG | + | chr1.4:1036996-1037015 | None:intergenic | 30.0% | |
| AGAAGAAACAAACTCTAACA+AGG | - | chr1.4:1037959-1037978 | MS.gene63991:CDS | 30.0% | |
| CTCAGAAACTGATCTTAAAA+GGG | - | chr1.4:1037329-1037348 | MS.gene63991:CDS | 30.0% | |
| TTTACTTGAGCTTAGATCAT+AGG | - | chr1.4:1037776-1037795 | MS.gene63991:CDS | 30.0% | |
| TTTGAAAAACACCTTCTTCT+TGG | + | chr1.4:1037367-1037386 | None:intergenic | 30.0% | |
| ! | GAAATGGTGGAATTAGAATA+GGG | - | chr1.4:1037623-1037642 | MS.gene63991:CDS | 30.0% |
| ! | TGCATCAACATTAAGAGTAT+TGG | + | chr1.4:1037716-1037735 | None:intergenic | 30.0% |
| !! | AAGAAATTGAAATGGGTTGT+GGG | - | chr1.4:1038003-1038022 | MS.gene63991:CDS | 30.0% |
| !! | TAAGAAATTGAAATGGGTTG+TGG | - | chr1.4:1038002-1038021 | MS.gene63991:CDS | 30.0% |
| !!! | AAAGTTGATAGTTTTGGATC+AGG | - | chr1.4:1038030-1038049 | MS.gene63991:CDS | 30.0% |
| !!! | GATGTTTTAGCATTAGGAAA+TGG | - | chr1.4:1037607-1037626 | MS.gene63991:CDS | 30.0% |
| !!! | GTTGATGATGTTTTAGCATT+AGG | - | chr1.4:1037601-1037620 | MS.gene63991:CDS | 30.0% |
| AAACACCTTCTTCTTGGTAA+AGG | + | chr1.4:1037361-1037380 | None:intergenic | 35.0% | |
| AGAATAGGGTTTGATATTGG+TGG | - | chr1.4:1037637-1037656 | MS.gene63991:CDS | 35.0% | |
| ATTAAGGTTACTGTTGTTGG+TGG | + | chr1.4:1036993-1037012 | None:intergenic | 35.0% | |
| ATTCTTCAGAAACCAGTTAG+GGG | - | chr1.4:1038078-1038097 | MS.gene63991:CDS | 35.0% | |
| CAAAGACATCAACTTCCTTT+AGG | - | chr1.4:1037175-1037194 | MS.gene63991:CDS | 35.0% | |
| CATTCTTCAGAAACCAGTTA+GGG | - | chr1.4:1038077-1038096 | MS.gene63991:CDS | 35.0% | |
| GCAGCAATGAATTCACTAAA+TGG | + | chr1.4:1037739-1037758 | None:intergenic | 35.0% | |
| GCTCAGAAACTGATCTTAAA+AGG | - | chr1.4:1037328-1037347 | MS.gene63991:CDS | 35.0% | |
| GGTTCAGTTTCACTGAAAAT+TGG | - | chr1.4:1036830-1036849 | MS.gene63991:CDS | 35.0% | |
| GTTTCACTGAAAATTGGAGA+TGG | - | chr1.4:1036836-1036855 | MS.gene63991:CDS | 35.0% | |
| TCTTCACAAAAACATCTCTC+TGG | - | chr1.4:1037012-1037031 | MS.gene63991:CDS | 35.0% | |
| TGAGAATCAGAGATTTGTGA+AGG | - | chr1.4:1037555-1037574 | MS.gene63991:CDS | 35.0% | |
| TGATCTAAGCTCAAGTAAAG+TGG | + | chr1.4:1037775-1037794 | None:intergenic | 35.0% | |
| TTCAGCTCATTTGCAATGTT+GGG | + | chr1.4:1037145-1037164 | None:intergenic | 35.0% | |
| TTCCAAAGAGAAACAGGAAA+AGG | + | chr1.4:1037415-1037434 | None:intergenic | 35.0% | |
| TTTCAGCTCATTTGCAATGT+TGG | + | chr1.4:1037146-1037165 | None:intergenic | 35.0% | |
| ! | ACAAGGTTGATTGAAAGGTT+TGG | - | chr1.4:1037976-1037995 | MS.gene63991:CDS | 35.0% |
| ! | CTCTAACAAGGTTGATTGAA+AGG | - | chr1.4:1037971-1037990 | MS.gene63991:CDS | 35.0% |
| ! | GGAAATGGTGGAATTAGAAT+AGG | - | chr1.4:1037622-1037641 | MS.gene63991:CDS | 35.0% |
| ! | TTGATATCGATCGAGTTTTG+CGG | - | chr1.4:1037890-1037909 | MS.gene63991:CDS | 35.0% |
| !! | CTAAAGGAAGTTGATGTCTT+TGG | + | chr1.4:1037177-1037196 | None:intergenic | 35.0% |
| !! | GTTTTAGCATTAGGAAATGG+TGG | - | chr1.4:1037610-1037629 | MS.gene63991:CDS | 35.0% |
| !! | TTCCTTTTCCTGTTTCTCTT+TGG | - | chr1.4:1037410-1037429 | MS.gene63991:CDS | 35.0% |
| !!! | AAGAAGCTGTTTTTCCATCT+GGG | + | chr1.4:1037095-1037114 | None:intergenic | 35.0% |
| !!! | GGAGAGAAAGTTGATAGTTT+TGG | - | chr1.4:1038024-1038043 | MS.gene63991:CDS | 35.0% |
| !!! | TGTTTTGATTTGGTTAGTGG+TGG | - | chr1.4:1037529-1037548 | MS.gene63991:CDS | 35.0% |
| AAGAACTGGGATCACTGAAA+TGG | - | chr1.4:1037207-1037226 | MS.gene63991:CDS | 40.0% | |
| ACATCAACTTCCTTTAGGCA+AGG | - | chr1.4:1037180-1037199 | MS.gene63991:CDS | 40.0% | |
| AGCATAGAGAGCAAAGAGAT+TGG | + | chr1.4:1036936-1036955 | None:intergenic | 40.0% | |
| AGTGAATTCATTGCTGCTAG+AGG | - | chr1.4:1037742-1037761 | MS.gene63991:CDS | 40.0% | |
| ATAGGGTTTGATATTGGTGG+TGG | - | chr1.4:1037640-1037659 | MS.gene63991:CDS | 40.0% | |
| ATCAAGCCAAAACAAACCAC+CGG | + | chr1.4:1037917-1037936 | None:intergenic | 40.0% | |
| CAGATGGAAAAACAGCTTCT+TGG | - | chr1.4:1037094-1037113 | MS.gene63991:CDS | 40.0% | |
| CCATTCTTCAGAAACCAGTT+AGG | - | chr1.4:1038076-1038095 | MS.gene63991:CDS | 40.0% | |
| GATTCATGCATCAAGTGCAT+TGG | - | chr1.4:1037828-1037847 | MS.gene63991:CDS | 40.0% | |
| GTCACAGTTCATGAGTTACA+AGG | - | chr1.4:1037273-1037292 | MS.gene63991:CDS | 40.0% | |
| GTTCTTGAATCCTTGCCTAA+AGG | + | chr1.4:1037193-1037212 | None:intergenic | 40.0% | |
| TAGGCAAGGATTCAAGAACT+GGG | - | chr1.4:1037194-1037213 | MS.gene63991:CDS | 40.0% | |
| TCAAAAGAAACTAGCCCAGA+TGG | - | chr1.4:1037078-1037097 | MS.gene63991:CDS | 40.0% | |
| TGGAGGAAAAGCTGAAAAGT+TGG | - | chr1.4:1037855-1037874 | MS.gene63991:CDS | 40.0% | |
| TTAGGCAAGGATTCAAGAAC+TGG | - | chr1.4:1037193-1037212 | MS.gene63991:CDS | 40.0% | |
| TTCATGAGTTACAAGGCTTC+TGG | - | chr1.4:1037280-1037299 | MS.gene63991:CDS | 40.0% | |
| ! | CCTAACTGGTTTCTGAAGAA+TGG | + | chr1.4:1038079-1038098 | None:intergenic | 40.0% |
| ! | TGATATCGATCGAGTTTTGC+GGG | - | chr1.4:1037891-1037910 | MS.gene63991:CDS | 40.0% |
| !! | AAGGAAGTTGATGTCTTTGG+AGG | + | chr1.4:1037174-1037193 | None:intergenic | 40.0% |
| !! | ACTGAAATGGTGTCATCAGT+TGG | - | chr1.4:1037220-1037239 | MS.gene63991:CDS | 40.0% |
| !! | TTTGATATTGGTGGTGGTTC+AGG | - | chr1.4:1037646-1037665 | MS.gene63991:CDS | 40.0% |
| !!! | CAAGAAGCTGTTTTTCCATC+TGG | + | chr1.4:1037096-1037115 | None:intergenic | 40.0% |
| AGAGGCTTCCAAAGAGAAAC+AGG | + | chr1.4:1037421-1037440 | None:intergenic | 45.0% | |
| GCATCAAGTGCATTGGATGT+TGG | - | chr1.4:1037835-1037854 | MS.gene63991:CDS | 45.0% | |
| GTGAGCCTTTACCAAGAAGA+AGG | - | chr1.4:1037353-1037372 | MS.gene63991:CDS | 45.0% | |
| TCAAGTGCATTGGATGTTGG+AGG | - | chr1.4:1037838-1037857 | MS.gene63991:CDS | 45.0% | |
| TGAGCTACACTCCAATCATC+AGG | + | chr1.4:1037313-1037332 | None:intergenic | 45.0% | |
| ! | GTTTCTCTTTGGAAGCCTCT+TGG | - | chr1.4:1037421-1037440 | MS.gene63991:CDS | 45.0% |
| !! | GTTACTGTTGTTGGTGGTTG+TGG | + | chr1.4:1036987-1037006 | None:intergenic | 45.0% |
| !!! | GGTTGTGGTGTGGTTTTTTG+AGG | + | chr1.4:1036972-1036991 | None:intergenic | 45.0% |
| CTGGTGCTTGTCCTGATGAT+TGG | - | chr1.4:1037299-1037318 | MS.gene63991:CDS | 50.0% | |
| !! | TGTTGTTGGTGGTTGTGGTG+TGG | + | chr1.4:1036982-1037001 | None:intergenic | 50.0% |
| ! | ATCGATCGAGTTTTGCGGGC+CGG | - | chr1.4:1037895-1037914 | MS.gene63991:CDS | 55.0% |
| !!! | TGCGGGCCGGTGGTTTGTTT+TGG | - | chr1.4:1037908-1037927 | MS.gene63991:CDS | 60.0% |
| ! | GATCGAGTTTTGCGGGCCGG+TGG | - | chr1.4:1037898-1037917 | MS.gene63991:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1036827 | 1038104 | 1036827 | ID=MS.gene63991 |
| chr1.4 | mRNA | 1036827 | 1038104 | 1036827 | ID=MS.gene63991.t1;Parent=MS.gene63991 |
| chr1.4 | exon | 1036827 | 1038104 | 1036827 | ID=MS.gene63991.t1.exon1;Parent=MS.gene63991.t1 |
| chr1.4 | CDS | 1036827 | 1038104 | 1036827 | ID=cds.MS.gene63991.t1;Parent=MS.gene63991.t1 |
| Gene Sequence |
| Protein sequence |
