AlfalfaGEDB | MS.gene63991

M. sativa cultivar XinJiangDaYe / MS.gene63991

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008168 GO:0016740 GO:0016741
PFAM: PF03141.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63991.t1	XP_013466170.1	97.7	426	9	1	1	425	1	426	2.80E-226	794.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63991.t1	A0A072VF27	97.7	426	9	1	1	425	1	426	2.0e-226	794.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050657	MS.gene63991	0.815909	7.26E-52	-1.69E-46
MS.gene051572	MS.gene63991	0.80132	9.52E-49	-1.69E-46
MS.gene053144	MS.gene63991	0.844269	8.39E-59	-1.69E-46
MS.gene054584	MS.gene63991	0.840657	7.62E-58	-1.69E-46
MS.gene056538	MS.gene63991	0.815642	8.33E-52	-1.69E-46

Showing 1 to 5 of 5 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene023122	MS.gene63991	PPI
MS.gene064739	MS.gene63991	PPI
MS.gene24186	MS.gene63991	PPI
MS.gene27044	MS.gene63991	PPI
MS.gene36460	MS.gene63991	PPI
MS.gene42277	MS.gene63991	PPI
MS.gene63991	MS.gene35128	PPI
MS.gene63991	MS.gene69420	PPI
MS.gene63991	MS.gene028330	PPI
MS.gene63991	MS.gene014442	PPI

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63991.t1	MTR_1g024005	98.592	426	5	1	1	425	1	426	0.0	858
MS.gene63991.t1	MTR_3g113270	76.168	428	90	5	1	424	1	420	0.0	659
MS.gene63991.t1	MTR_3g071050	73.333	270	65	3	29	296	1	265	2.31e-140	402
MS.gene63991.t1	MTR_2g028610	37.383	428	231	8	30	423	34	458	2.44e-92	286
MS.gene63991.t1	MTR_2g028590	38.118	425	226	8	33	423	42	463	4.43e-92	286
MS.gene63991.t1	MTR_5g077710	44.127	315	162	7	119	424	76	385	1.08e-89	277
MS.gene63991.t1	MTR_8g028460	40.483	331	176	7	108	424	164	487	6.48e-80	255
MS.gene63991.t1	MTR_0010s0400	39.198	324	180	7	108	425	147	459	8.27e-78	249
MS.gene63991.t1	MTR_3g070620	76.471	136	29	2	227	360	54	188	2.63e-67	213
MS.gene63991.t1	MTR_4g094572	33.333	414	225	8	19	423	4	375	7.21e-65	213

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63991.t1	AT3G27230	72.941	425	100	4	1	425	1	410	0.0	632
MS.gene63991.t1	AT5G40830	69.718	426	114	5	1	424	1	413	0.0	612
MS.gene63991.t1	AT5G40830	69.718	426	114	5	1	424	1	413	0.0	612
MS.gene63991.t1	AT5G40830	63.380	426	101	5	1	424	1	373	0.0	541
MS.gene63991.t1	AT3G05390	32.969	458	241	12	23	425	16	462	1.01e-79	254
MS.gene63991.t1	AT4G01240	39.697	330	179	7	108	424	334	656	9.02e-75	246
MS.gene63991.t1	AT1G29790	41.554	296	153	6	131	423	98	376	7.66e-70	226
MS.gene63991.t1	AT1G29790	41.554	296	153	6	131	423	98	376	7.66e-70	226

Showing 1 to 8 of 8 entries

Previous1Next

Find 64 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCTTCTTCTTGGTAA+AGG	0.474985	1.4:+1037551	None:intergenic
AAGAAATTGAAATGGGTTGT+GGG	0.464176	1.4:-1036906	MS.gene63991:CDS
AAGAACTGGGATCACTGAAA+TGG	0.496871	1.4:-1037702	MS.gene63991:CDS
AAGATTAAGGTTACTGTTGT+TGG	0.413130	1.4:+1037916	None:intergenic
AAGGAAGTTGATGTCTTTGG+AGG	0.474654	1.4:+1037738	None:intergenic
ACAAGGTTGATTGAAAGGTT+TGG	0.388153	1.4:-1036933	MS.gene63991:CDS
ACATCAACTTCCTTTAGGCA+AGG	0.546386	1.4:-1037729	MS.gene63991:CDS
ACTGAAATGGTGTCATCAGT+TGG	0.572185	1.4:-1037689	MS.gene63991:CDS
AGAAACCAGTTAGGGGTTGA+AGG	0.456670	1.4:-1036824	None:intergenic
AGAAGAAACAAACTCTAACA+AGG	0.679763	1.4:-1036950	MS.gene63991:CDS

Showing 1 to 10 of 64 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGATTAAGGTTACTGTTGT+TGG	+	chr1.4:1036996-1037015	None:intergenic	30.0%
AGAAGAAACAAACTCTAACA+AGG	-	chr1.4:1037959-1037978	MS.gene63991:CDS	30.0%
CTCAGAAACTGATCTTAAAA+GGG	-	chr1.4:1037329-1037348	MS.gene63991:CDS	30.0%
TTTACTTGAGCTTAGATCAT+AGG	-	chr1.4:1037776-1037795	MS.gene63991:CDS	30.0%
TTTGAAAAACACCTTCTTCT+TGG	+	chr1.4:1037367-1037386	None:intergenic	30.0%
AAACACCTTCTTCTTGGTAA+AGG	+	chr1.4:1037361-1037380	None:intergenic	35.0%
AGAATAGGGTTTGATATTGG+TGG	-	chr1.4:1037637-1037656	MS.gene63991:CDS	35.0%
ATTAAGGTTACTGTTGTTGG+TGG	+	chr1.4:1036993-1037012	None:intergenic	35.0%
ATTCTTCAGAAACCAGTTAG+GGG	-	chr1.4:1038078-1038097	MS.gene63991:CDS	35.0%
CAAAGACATCAACTTCCTTT+AGG	-	chr1.4:1037175-1037194	MS.gene63991:CDS	35.0%

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	1036827	1038104	1036827	ID=MS.gene63991
chr1.4	mRNA	1036827	1038104	1036827	ID=MS.gene63991.t1;Parent=MS.gene63991
chr1.4	exon	1036827	1038104	1036827	ID=MS.gene63991.t1.exon1;Parent=MS.gene63991.t1
chr1.4	CDS	1036827	1038104	1036827	ID=cds.MS.gene63991.t1;Parent=MS.gene63991.t1

Gene Sequence

>MS.gene63991

ATGGGTTCAGTTTCACTGAAAATTGGAGATGGAACAGCAAGATTCAAAAGAGCAACACTTTGTTCTTCAGCTGTTAACATTCTCATGATTTTCTGTGTCATCACAACCAATCTCTTTGCTCTCTATGCTTTCACTTCTTCTTCCTCAAAAAACCACACCACAACCACCAACAACAGTAACCTTAATCTTCACAAAAACATCTCTCTGGTCTCAGAACAAGTCTCACTCATACTCAGAGAGATAGATTTGTCTCAAAAGAAACTAGCCCAGATGGAAAAACAGCTTCTTGGTTATGAAAGCATTGATCTTTCACGACCCAACATTGCAAATGAGCTGAAAATCTTCCTCCAAAGACATCAACTTCCTTTAGGCAAGGATTCAAGAACTGGGATCACTGAAATGGTGTCATCAGTTGGTCATTCTTGTGAGAAAAATTCAGACTTGTTGTCACAGTTCATGAGTTACAAGGCTTCTGGTGCTTGTCCTGATGATTGGAGTGTAGCTCAGAAACTGATCTTAAAAGGGTGTGAGCCTTTACCAAGAAGAAGGTGTTTTTCAAAAACTGTTTCAAAATCAGGTTTTTTTCCTTTTCCTGTTTCTCTTTGGAAGCCTCTTGGTAATAACACTTTTAATTGGAGTGGTTTGAATTGTAAGAGTTTTGAATGTTTGAAAGGTAAGAAATTGAGTAGAGATTGTGTAAATTGTTTTGATTTGGTTAGTGGTGGAAATGAGAATCAGAGATTTGTGAAGGCAAAAAGTAAAAATGATTTTTTGGTTGATGATGTTTTAGCATTAGGAAATGGTGGAATTAGAATAGGGTTTGATATTGGTGGTGGTTCAGGTTCTTTTGCTGCTAGAATGTTTGATAGAAATGTTACTGTGATTACCAATACTCTTAATGTTGATGCACCATTTAGTGAATTCATTGCTGCTAGAGGACTTTTTCCACTTTACTTGAGCTTAGATCATAGGTTTCCATTTTATGACAATGTGTTTGATTTGATTCATGCATCAAGTGCATTGGATGTTGGAGGAAAAGCTGAAAAGTTGGAGTTTTTAATGTTTGATATCGATCGAGTTTTGCGGGCCGGTGGTTTGTTTTGGCTTGATAACTTCTTTTGTTTTAGTGAAGAGAAGAAACAAACTCTAACAAGGTTGATTGAAAGGTTTGGATATAAGAAATTGAAATGGGTTGTGGGAGAGAAAGTTGATAGTTTTGGATCAGGAAAATCTGAAGTTGTGTTGTCTGCCATTCTTCAGAAACCAGTTAGGGGTTGA

Protein sequence

>MS.gene63991.t1

MGSVSLKIGDGTARFKRATLCSSAVNILMIFCVITTNLFALYAFTSSSSKNHTTTTNNSNLNLHKNISLVSEQVSLILREIDLSQKKLAQMEKQLLGYESIDLSRPNIANELKIFLQRHQLPLGKDSRTGITEMVSSVGHSCEKNSDLLSQFMSYKASGACPDDWSVAQKLILKGCEPLPRRRCFSKTVSKSGFFPFPVSLWKPLGNNTFNWSGLNCKSFECLKGKKLSRDCVNCFDLVSGGNENQRFVKAKSKNDFLVDDVLALGNGGIRIGFDIGGGSGSFAARMFDRNVTVITNTLNVDAPFSEFIAARGLFPLYLSLDHRFPFYDNVFDLIHASSALDVGGKAEKLEFLMFDIDRVLRAGGLFWLDNFFCFSEEKKQTLTRLIERFGYKKLKWVVGEKVDSFGSGKSEVVLSAILQKPVRG