Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051612.t1 | XP_003589000.1 | 99.6 | 1056 | 4 | 0 | 1 | 1056 | 1 | 1056 | 0.00E+00 | 2114 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051612.t1 | P26969 | 93.4 | 1061 | 61 | 3 | 1 | 1056 | 1 | 1057 | 0.0e+00 | 1964.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051612.t1 | G7I9Z0 | 99.6 | 1056 | 4 | 0 | 1 | 1056 | 1 | 1056 | 0.0e+00 | 2114.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051612 | MS.gene052414 | 0.802166 | 6.38E-49 | -1.69E-46 |
| MS.gene051612 | MS.gene059455 | 0.820986 | 5.13E-53 | -1.69E-46 |
| MS.gene051612 | MS.gene066450 | 0.803857 | 2.85E-49 | -1.69E-46 |
| MS.gene051612 | MS.gene21471 | 0.80514 | 1.54E-49 | -1.69E-46 |
| MS.gene051612 | MS.gene25715 | 0.806374 | 8.49E-50 | -1.69E-46 |
| MS.gene051612 | MS.gene31298 | 0.840228 | 9.87E-58 | -1.69E-46 |
| MS.gene051612 | MS.gene39277 | 0.807647 | 4.56E-50 | -1.69E-46 |
| MS.gene051612 | MS.gene67422 | 0.824595 | 7.41E-54 | -1.69E-46 |
| MS.gene051612 | MS.gene77474 | 0.80693 | 6.47E-50 | -1.69E-46 |
| MS.gene051612 | MS.gene77516 | 0.820093 | 8.23E-53 | -1.69E-46 |
| MS.gene051612 | MS.gene85983 | 0.817103 | 3.92E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051612.t1 | MTR_1g016230 | 99.621 | 1056 | 4 | 0 | 1 | 1056 | 1 | 1056 | 0.0 | 2198 |
| MS.gene051612.t1 | MTR_1g016280 | 78.261 | 69 | 15 | 0 | 886 | 954 | 13 | 81 | 6.17e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051612.t1 | AT2G26080 | 84.369 | 1062 | 141 | 7 | 1 | 1056 | 1 | 1043 | 0.0 | 1834 |
| MS.gene051612.t1 | AT4G33010 | 84.295 | 1057 | 143 | 4 | 1 | 1054 | 1 | 1037 | 0.0 | 1833 |
| MS.gene051612.t1 | AT4G33010 | 84.934 | 989 | 126 | 4 | 1 | 986 | 1 | 969 | 0.0 | 1717 |
Find 251 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGTGCAATAGCTTTA+AGG | 0.075284 | 1.3:+5912070 | None:intergenic |
| CCAGGAAATGTTCGACAATT+TGG | 0.125124 | 1.3:-5910641 | MS.gene051612:intron |
| TATTGACTTAAGAGGCTTTA+AGG | 0.138981 | 1.3:-5908793 | MS.gene051612:intron |
| GGACAACTTATCTGCATTTA+TGG | 0.170561 | 1.3:-5909889 | MS.gene051612:intron |
| TCCTTCAAACGGATTGATTT+TGG | 0.174050 | 1.3:+5913466 | None:intergenic |
| AGTGATCTTGAGGAATATTT+TGG | 0.174246 | 1.3:-5913311 | MS.gene051612:CDS |
| GTTGGTGGATTTCACGGTTC+TGG | 0.188035 | 1.3:-5913643 | MS.gene051612:CDS |
| CAAAGGGTTCATGGTCTTGC+TGG | 0.252873 | 1.3:-5912054 | MS.gene051612:CDS |
| GGAATTGCATTCTGAAATTC+TGG | 0.261041 | 1.3:+5911380 | None:intergenic |
| GGATTTAGCTTCAAAGAATA+AGG | 0.264235 | 1.3:-5913383 | MS.gene051612:CDS |
| TGGTCCTCATGCTGCTTTCT+TGG | 0.273039 | 1.3:-5912759 | MS.gene051612:CDS |
| CTTGCTGGGGTATTTGCTTT+GGG | 0.286242 | 1.3:-5912039 | MS.gene051612:CDS |
| CAATTCCTTCTGGATTAGTT+AGG | 0.290266 | 1.3:-5911364 | MS.gene051612:CDS |
| GGCCCTGGCATGGGTCCTAT+TGG | 0.290920 | 1.3:-5909324 | MS.gene051612:CDS |
| TCTTGCTGGGGTATTTGCTT+TGG | 0.302519 | 1.3:-5912040 | MS.gene051612:CDS |
| TTTCAGAATGCAATTCCTTC+TGG | 0.303780 | 1.3:-5911374 | MS.gene051612:CDS |
| CAGGAAATGTTCGACAATTT+GGG | 0.304504 | 1.3:-5910640 | MS.gene051612:CDS |
| TATCTTGATGAAGATGAAAA+TGG | 0.308710 | 1.3:+5913745 | None:intergenic |
| GGTGTTAGTGTTGATTCTTC+TGG | 0.315029 | 1.3:-5912692 | MS.gene051612:CDS |
| AGACGCTTCGCAACGTCTTC+AGG | 0.318578 | 1.3:+5908663 | None:intergenic |
| TAGTATCTCAGCTGCGCCTT+GGG | 0.321650 | 1.3:-5909087 | MS.gene051612:CDS |
| TGGTACTGAAGGTGAGGTTT+TGG | 0.332419 | 1.3:-5912939 | MS.gene051612:CDS |
| GCTGCATATTCCCTGGAATA+TGG | 0.338323 | 1.3:+5907757 | None:intergenic |
| TGGAGGAGGTGGCCCTGGCA+TGG | 0.339348 | 1.3:-5909334 | MS.gene051612:CDS |
| GGCTCCGTGTTGCTAAGTTT+TGG | 0.341701 | 1.3:-5907720 | MS.gene051612:CDS |
| GCAATAGCTTTAAGGCCTTC+AGG | 0.343971 | 1.3:+5912078 | None:intergenic |
| TTTCAAATCTTTCATTGGTA+TGG | 0.346816 | 1.3:-5913359 | MS.gene051612:CDS |
| CGTGGTGTTGGTGGATTTCA+CGG | 0.347506 | 1.3:-5913649 | MS.gene051612:CDS |
| AATACATACGTGTTGAAGAT+AGG | 0.350152 | 1.3:+5911320 | None:intergenic |
| ACAGTGGAAGTTCAGGATAT+TGG | 0.352385 | 1.3:-5912000 | MS.gene051612:CDS |
| CGCATTCAGTTTCATTGTAC+AGG | 0.355677 | 1.3:+5911125 | None:intergenic |
| GGAGGAGGTGGCCCTGGCAT+GGG | 0.356958 | 1.3:-5909333 | MS.gene051612:CDS |
| TTGGTGGATTTCACGGTTCT+GGG | 0.357664 | 1.3:-5913642 | MS.gene051612:CDS |
| TTGAAGCCTCCTGGTGAGTT+TGG | 0.363911 | 1.3:-5912836 | MS.gene051612:CDS |
| GGTTGTGGTGAAAGATCTTA+AGG | 0.369312 | 1.3:-5913011 | MS.gene051612:CDS |
| ATCAATTTGAGAGTTGTAGA+TGG | 0.372080 | 1.3:-5911907 | MS.gene051612:CDS |
| TGAACAGGCTCAAGGTTATC+AGG | 0.375001 | 1.3:-5911040 | MS.gene051612:intron |
| AAGATAGGGTGTGTCAAATA+AGG | 0.377382 | 1.3:+5911335 | None:intergenic |
| TGTTCACAACAATGTTCTTA+AGG | 0.378676 | 1.3:-5908363 | MS.gene051612:intron |
| ACTTGGAACAGTGGAAGTTC+AGG | 0.378841 | 1.3:-5912007 | MS.gene051612:CDS |
| CATGTAGTTTGCATTCAAAA+TGG | 0.382287 | 1.3:+5908983 | None:intergenic |
| AGCTGATGGATTTGAGCTTA+AGG | 0.383209 | 1.3:-5913032 | MS.gene051612:CDS |
| TTCGGTGTTCCAATGGGTTA+TGG | 0.388634 | 1.3:-5912782 | MS.gene051612:CDS |
| AAGTGTTTCTTTACACCAAT+AGG | 0.394998 | 1.3:+5909309 | None:intergenic |
| TGTTATGGCAAGTGATCTAT+TGG | 0.395148 | 1.3:-5912870 | MS.gene051612:CDS |
| TGCAAGATCATCCATGATAA+TGG | 0.396584 | 1.3:-5909703 | MS.gene051612:CDS |
| AGCAGCATCTGCAATTGCTT+TGG | 0.397575 | 1.3:+5911942 | None:intergenic |
| TGATGAAACAACTACATTAG+AGG | 0.399239 | 1.3:-5911773 | MS.gene051612:CDS |
| CTCATGGACTATGGATTTCA+TGG | 0.402965 | 1.3:-5908642 | MS.gene051612:CDS |
| GCCAAAATCAATCCGTTTGA+AGG | 0.403834 | 1.3:-5913467 | MS.gene051612:CDS |
| AAGGATATTGATTACAAATC+CGG | 0.405505 | 1.3:-5912992 | MS.gene051612:CDS |
| GCCTGTTCAGTTGGTGCAAA+AGG | 0.405607 | 1.3:+5911054 | None:intergenic |
| TCACCAGCAGCACCAGCATT+TGG | 0.405646 | 1.3:+5910571 | None:intergenic |
| GCTATTGCACAAAGGGTTCA+TGG | 0.406768 | 1.3:-5912063 | MS.gene051612:CDS |
| TAATGAGGTTAAGGTTGTTA+TGG | 0.406873 | 1.3:-5912885 | MS.gene051612:CDS |
| CTGGTTGAAGGGTGCAGATC+AGG | 0.408092 | 1.3:+5906734 | None:intergenic |
| GCGAAGCGTCTCATGGACTA+TGG | 0.408334 | 1.3:-5908651 | MS.gene051612:CDS |
| GAGTTCATTATTGACTTAAG+AGG | 0.413841 | 1.3:-5908801 | MS.gene051612:CDS |
| TCCCTTGGCATCAGTTCCTA+TGG | 0.414977 | 1.3:+5909956 | None:intergenic |
| CTTCTGGTGTAGCTGAGTTA+TGG | 0.417012 | 1.3:+5913554 | None:intergenic |
| CAACCAAATGCTGGTGCTGC+TGG | 0.417943 | 1.3:-5910574 | MS.gene051612:CDS |
| GGCTCATGCTAATGAGGTTA+AGG | 0.417957 | 1.3:-5912894 | MS.gene051612:CDS |
| AGTTGCTGAGATACATTCAT+AGG | 0.421232 | 1.3:-5911197 | MS.gene051612:CDS |
| AGCTGATATTGTTGTTGGTT+CGG | 0.421591 | 1.3:-5912813 | MS.gene051612:CDS |
| GGTGTTCTTGTTCAGTATCC+TGG | 0.423926 | 1.3:-5912959 | MS.gene051612:CDS |
| GTTGGTTCGGCTCAGAGATT+CGG | 0.424014 | 1.3:-5912800 | MS.gene051612:CDS |
| TTCAATGTTAATGTTTCCCT+TGG | 0.425226 | 1.3:+5909941 | None:intergenic |
| CTAACACCAATGATTCTTCC+AGG | 0.426159 | 1.3:+5912707 | None:intergenic |
| CCTCATGGAGGAGGTGGCCC+TGG | 0.427915 | 1.3:-5909339 | MS.gene051612:CDS |
| TGCATTCCTCATGGAGGAGG+TGG | 0.428528 | 1.3:-5909345 | MS.gene051612:CDS |
| TTCTCTTTGCAACCAAATGC+TGG | 0.431435 | 1.3:-5910583 | MS.gene051612:CDS |
| TCTTCAACAGCCTGTGATGC+TGG | 0.434067 | 1.3:+5906715 | None:intergenic |
| TTTCCATTGTAGAATACTGC+TGG | 0.436453 | 1.3:-5908693 | MS.gene051612:intron |
| TCAGCAACTCATGCTCAGTT+TGG | 0.438744 | 1.3:+5911211 | None:intergenic |
| CTTACAAGCCCAGGTTGGAT+TGG | 0.439044 | 1.3:-5909405 | MS.gene051612:CDS |
| TATGTGTAATAATATTCAAA+AGG | 0.439913 | 1.3:-5913122 | MS.gene051612:CDS |
| GCTATGTATGTGTAAGAGAT+AGG | 0.441736 | 1.3:+5909047 | None:intergenic |
| CCTTAAAGCTATTGCACAAA+GGG | 0.443002 | 1.3:-5912070 | MS.gene051612:CDS |
| TTCAAATCTTTCATTGGTAT+GGG | 0.444511 | 1.3:-5913358 | MS.gene051612:CDS |
| TTTGGAGCTGATATTGTTGT+TGG | 0.444709 | 1.3:-5912818 | MS.gene051612:CDS |
| GTAGTATCTCAGCTGCGCCT+TGG | 0.451595 | 1.3:-5909088 | MS.gene051612:CDS |
| AAGTTTAACAAGTTTGATGA+AGG | 0.454491 | 1.3:-5913439 | MS.gene051612:CDS |
| TCGTAAACACCGTGAGTTGA+AGG | 0.456170 | 1.3:+5909745 | None:intergenic |
| TAAACTTCATTTCCTTCAAA+CGG | 0.456298 | 1.3:+5913455 | None:intergenic |
| GCTTTGGGACTAAAGAAACT+TGG | 0.456980 | 1.3:-5912024 | MS.gene051612:CDS |
| CATGGACAAAGCCATATTCC+AGG | 0.458564 | 1.3:-5907768 | MS.gene051612:CDS |
| CTTCTGGAAAGCCAGCTTTG+AGG | 0.459054 | 1.3:-5912676 | MS.gene051612:CDS |
| CTACTTCACAAGAGTATAAG+AGG | 0.460885 | 1.3:-5912736 | MS.gene051612:CDS |
| AATTCCTTCTGGATTAGTTA+GGG | 0.462600 | 1.3:-5911363 | MS.gene051612:CDS |
| TTGACTGTGTTGAAGCCTCC+TGG | 0.467785 | 1.3:-5912845 | MS.gene051612:CDS |
| GGTTATTCGTGCATATCATA+TGG | 0.467862 | 1.3:-5910533 | MS.gene051612:intron |
| TCAGAGATTCGGTGTTCCAA+TGG | 0.468626 | 1.3:-5912789 | MS.gene051612:CDS |
| CGTTGCAGGCTGAGTTGGAT+AGG | 0.470899 | 1.3:-5908448 | MS.gene051612:intron |
| CACCCTTCAACCAGCATCAC+AGG | 0.471732 | 1.3:-5906725 | MS.gene051612:CDS |
| TATTATGCTGTGGCAGCAGC+TGG | 0.472784 | 1.3:+5906691 | None:intergenic |
| AGACGTTGCGAAGCGTCTCA+TGG | 0.473966 | 1.3:-5908658 | MS.gene051612:CDS |
| TGCGAAATCTCAGCTTGATA+AGG | 0.476443 | 1.3:+5913259 | None:intergenic |
| AATGCTTCATTGCTTGATGA+AGG | 0.479733 | 1.3:-5913169 | MS.gene051612:CDS |
| TTATGGTGAGTTTATTAAGA+AGG | 0.480802 | 1.3:-5912915 | MS.gene051612:CDS |
| GCAGCATATCCGTAGGGATA+AGG | 0.480846 | 1.3:-5912633 | MS.gene051612:CDS |
| AAAGGGTTCATGGTCTTGCT+GGG | 0.486903 | 1.3:-5912053 | MS.gene051612:CDS |
| ATCCAGTGATGGTACACAAC+AGG | 0.487296 | 1.3:+5910614 | None:intergenic |
| GGTGCTGCTGGTGAATATGC+TGG | 0.487416 | 1.3:-5910562 | MS.gene051612:CDS |
| GAAATTGCTGAGATTGAGAA+AGG | 0.487851 | 1.3:-5908395 | MS.gene051612:CDS |
| AACATCGTTGCAGGCTGAGT+TGG | 0.489211 | 1.3:-5908453 | MS.gene051612:intron |
| TAACATTGAAGAATTGAAGA+AGG | 0.489595 | 1.3:-5909928 | MS.gene051612:CDS |
| GACCTGTTGTGTACCATCAC+TGG | 0.491033 | 1.3:-5910616 | MS.gene051612:CDS |
| TTAGGCACTGCTTGCAAACA+TGG | 0.491272 | 1.3:-5912127 | MS.gene051612:intron |
| TGGCACCATCCATGTATACT+TGG | 0.491358 | 1.3:+5909677 | None:intergenic |
| TAATGCAAACATTGCGGTGG+TGG | 0.494171 | 1.3:+5910042 | None:intergenic |
| ACATCTGCTCCAATCCAACC+TGG | 0.496233 | 1.3:+5909396 | None:intergenic |
| TAAGAAGGCTCATGCTAATG+AGG | 0.496688 | 1.3:-5912900 | MS.gene051612:CDS |
| GGCTCAATCATGAGTGTACC+AGG | 0.497358 | 1.3:+5908597 | None:intergenic |
| CAGCCTGTGATGCTGGTTGA+AGG | 0.497494 | 1.3:+5906722 | None:intergenic |
| TAGCAACATTTGCACTGCTC+AGG | 0.497798 | 1.3:-5912606 | MS.gene051612:intron |
| GCTTCTGTAGAGTTATTATC+CGG | 0.499116 | 1.3:-5908859 | MS.gene051612:intron |
| TGCATAGCCATCCTCAAAGC+TGG | 0.501347 | 1.3:+5912665 | None:intergenic |
| CAGAGATTCGGTGTTCCAAT+GGG | 0.501601 | 1.3:-5912788 | MS.gene051612:CDS |
| TGAGGATGGCTATGCAAACT+CGG | 0.505759 | 1.3:-5912658 | MS.gene051612:CDS |
| ACTCACGGTGTTTACGAAGA+AGG | 0.506403 | 1.3:-5909739 | MS.gene051612:CDS |
| ACCAGTGAGATCAGTAATCA+AGG | 0.506686 | 1.3:+5913204 | None:intergenic |
| CGTCTTGCGAATGTATCACT+TGG | 0.506897 | 1.3:+5913577 | None:intergenic |
| ACCTTGCTTTCACTTTCAGT+TGG | 0.507300 | 1.3:+5908576 | None:intergenic |
| GCAACACGGAGCCATGGAGC+AGG | 0.508318 | 1.3:+5907730 | None:intergenic |
| TTTCAGAGCTTCAACAGTGA+TGG | 0.513648 | 1.3:+5913600 | None:intergenic |
| TGGATTTGAGCTTAAGGTTG+TGG | 0.514464 | 1.3:-5913026 | MS.gene051612:CDS |
| ATACTTGGCCTCCATTATCA+TGG | 0.514735 | 1.3:+5909692 | None:intergenic |
| TTACATATATCAATAGTTTG+TGG | 0.516540 | 1.3:+5913061 | None:intergenic |
| ACACCAATAGGACCCATGCC+AGG | 0.516635 | 1.3:+5909321 | None:intergenic |
| TTGACTCCACGGAAAAGAAC+CGG | 0.517084 | 1.3:+5908840 | None:intergenic |
| AAAATATTCCTCAAGATCAC+TGG | 0.518936 | 1.3:+5913313 | None:intergenic |
| ATAGCCATGATGGGTTCTAA+AGG | 0.520327 | 1.3:-5909029 | MS.gene051612:CDS |
| TAATGGAGGCCAAGTATACA+TGG | 0.524175 | 1.3:-5909686 | MS.gene051612:CDS |
| CCTGAAAATGCTCAACCACT+TGG | 0.525234 | 1.3:-5909110 | MS.gene051612:CDS |
| ATGTGTAATAATATTCAAAA+GGG | 0.527153 | 1.3:-5913121 | MS.gene051612:CDS |
| ATGATGCCTGGAAGAATCAT+TGG | 0.527525 | 1.3:-5912713 | MS.gene051612:CDS |
| ACGGAGCCATGGAGCAGGGA+AGG | 0.529571 | 1.3:+5907735 | None:intergenic |
| AGCATTTGGTTGCAAAGAGA+AGG | 0.532317 | 1.3:+5910585 | None:intergenic |
| TGCTAGTAGCCTTATCCCTA+CGG | 0.536845 | 1.3:+5912624 | None:intergenic |
| GGCACAGGCCATGACATTGT+TGG | 0.541827 | 1.3:+5908618 | None:intergenic |
| GCTATAATGAAGGTGCCAAC+TGG | 0.541859 | 1.3:-5909146 | MS.gene051612:intron |
| TCAAATGATTGAACACATGA+AGG | 0.542748 | 1.3:-5913404 | MS.gene051612:CDS |
| GAAGGCTGCTGAAACACATA+AGG | 0.543557 | 1.3:-5909910 | MS.gene051612:CDS |
| TACAAATCCGGTGATGTTTG+TGG | 0.544316 | 1.3:-5912980 | MS.gene051612:CDS |
| ATGCAGCCTTCCCTGCTCCA+TGG | 0.544987 | 1.3:-5907741 | MS.gene051612:CDS |
| CACTACTCATGGCTGATGCA+TGG | 0.545421 | 1.3:-5907786 | MS.gene051612:CDS |
| CACATGTTCCGTTGACTCCA+CGG | 0.545787 | 1.3:+5908829 | None:intergenic |
| TAACCTTGAGCCTGTTCAGT+TGG | 0.546947 | 1.3:+5911045 | None:intergenic |
| TGGCTTCTTTGATACTGTGA+AGG | 0.548348 | 1.3:-5911980 | MS.gene051612:CDS |
| TGCCACAGTATGATCCCACT+TGG | 0.551785 | 1.3:-5911150 | MS.gene051612:CDS |
| GCTGTATATCATGGACCTGA+AGG | 0.553442 | 1.3:-5912093 | MS.gene051612:CDS |
| GTTCAGTATCCTGGTACTGA+AGG | 0.555244 | 1.3:-5912950 | MS.gene051612:CDS |
| TTCCATTGTAGAATACTGCT+GGG | 0.556802 | 1.3:-5908692 | MS.gene051612:intron |
| ATACATACGTGTTGAAGATA+GGG | 0.557352 | 1.3:+5911321 | None:intergenic |
| GCCATGTATGCTGTATATCA+TGG | 0.558355 | 1.3:-5912102 | MS.gene051612:CDS |
| AAAACCTCACCTTCAGTACC+AGG | 0.558852 | 1.3:+5912941 | None:intergenic |
| CCACACATAGCTGCACTAGC+AGG | 0.560347 | 1.3:+5909993 | None:intergenic |
| AATGTTTCACGTGGTGTTGG+TGG | 0.560420 | 1.3:-5913658 | MS.gene051612:CDS |
| GAGTATAAGAGGATGATGCC+TGG | 0.561735 | 1.3:-5912725 | MS.gene051612:CDS |
| AACTTAGCAACACGGAGCCA+TGG | 0.562709 | 1.3:+5907724 | None:intergenic |
| GATGAAGATGAAAATGGAAG+AGG | 0.565467 | 1.3:+5913751 | None:intergenic |
| CACCATAGGAACTGATGCCA+AGG | 0.565979 | 1.3:-5909958 | MS.gene051612:CDS |
| AGTATCTCAGCTGCGCCTTG+GGG | 0.567369 | 1.3:-5909086 | MS.gene051612:CDS |
| GGACGTGTTGATAATGTGTA+TGG | 0.567764 | 1.3:-5906766 | MS.gene051612:CDS |
| TTTGTACCATGTGCTGAGAC+TGG | 0.568887 | 1.3:+5910017 | None:intergenic |
| GGGTGAATATCAGTAAAGCT+AGG | 0.569209 | 1.3:+5911075 | None:intergenic |
| ATGAGTAGTGATGGTGGATG+AGG | 0.569226 | 1.3:+5907799 | None:intergenic |
| CAGGTGGGACTTACAAGCCC+AGG | 0.570584 | 1.3:-5909414 | MS.gene051612:CDS |
| AGGGAAGGCTGCATATTCCC+TGG | 0.574104 | 1.3:+5907750 | None:intergenic |
| ATATGTAAGACAAGAGCTGA+TGG | 0.575721 | 1.3:-5913046 | MS.gene051612:CDS |
| GCACCAACTGAACAGGCTCA+AGG | 0.576923 | 1.3:-5911048 | MS.gene051612:CDS |
| TGGAAAGCCAGCTTTGAGGA+TGG | 0.577107 | 1.3:-5912672 | MS.gene051612:CDS |
| AAACTACATGGCGAAACGAT+TGG | 0.577356 | 1.3:-5908970 | MS.gene051612:CDS |
| TCATCCACCATCACTACTCA+TGG | 0.577476 | 1.3:-5907797 | MS.gene051612:CDS |
| ACAATGTCATGGCCTGTGCC+TGG | 0.578944 | 1.3:-5908615 | MS.gene051612:CDS |
| TTTGATGAAGGGTTAACAGA+AGG | 0.579522 | 1.3:-5913427 | MS.gene051612:CDS |
| TCCATGATATACAGCATACA+TGG | 0.580171 | 1.3:+5912101 | None:intergenic |
| GGAATGAAAATTGTCACCAT+AGG | 0.580449 | 1.3:-5909972 | MS.gene051612:CDS |
| GCCTTAAAGCTATTGCACAA+AGG | 0.580972 | 1.3:-5912071 | MS.gene051612:CDS |
| AGCAATGTTTCACGTGGTGT+TGG | 0.583378 | 1.3:-5913661 | MS.gene051612:CDS |
| TGGTGAATATGCTGGACTCA+TGG | 0.584882 | 1.3:-5910554 | MS.gene051612:CDS |
| GGGGCAGGAATTCCACCAGT+TGG | 0.584936 | 1.3:+5909131 | None:intergenic |
| GCCAACTGAAAGTGAAAGCA+AGG | 0.585715 | 1.3:-5908577 | MS.gene051612:intron |
| CTGAAATGATGCCTGTGACA+TGG | 0.586910 | 1.3:-5911098 | MS.gene051612:CDS |
| CCTGTTCAGTTGGTGCAAAA+GGG | 0.588402 | 1.3:+5911055 | None:intergenic |
| ATGTTCCACCAGTGATCTTG+AGG | 0.588665 | 1.3:-5913321 | MS.gene051612:CDS |
| AGTACTTACCACAGGGTGTG+AGG | 0.591127 | 1.3:+5909272 | None:intergenic |
| GAGGATGGCTATGCAAACTC+GGG | 0.591966 | 1.3:-5912657 | MS.gene051612:CDS |
| ATCATGAGTGTACCAGGCAC+AGG | 0.594276 | 1.3:+5908603 | None:intergenic |
| TCTGAAACGTCTTCTTTCAG+AGG | 0.595919 | 1.3:-5913815 | MS.gene051612:CDS |
| AGTTTAACAAGTTTGATGAA+GGG | 0.597750 | 1.3:-5913438 | MS.gene051612:CDS |
| GAAGGGTGCAGATCAGGTTG+CGG | 0.598205 | 1.3:+5906740 | None:intergenic |
| TTACACATACATAGCCATGA+TGG | 0.598851 | 1.3:-5909039 | MS.gene051612:CDS |
| GTAAAGCTAGGCCATGTCAC+AGG | 0.599465 | 1.3:+5911087 | None:intergenic |
| GTATCCTGGTACTGAAGGTG+AGG | 0.599692 | 1.3:-5912945 | MS.gene051612:CDS |
| CTACATGGCGAAACGATTGG+AGG | 0.600659 | 1.3:-5908967 | MS.gene051612:intron |
| TACACATACATAGCCATGAT+GGG | 0.601681 | 1.3:-5909038 | MS.gene051612:CDS |
| GAAGGAATCAAATCCAGTGA+TGG | 0.605184 | 1.3:+5910603 | None:intergenic |
| ACAAACCTGTGCATTCATGT+TGG | 0.606384 | 1.3:+5909657 | None:intergenic |
| GAAAACAGAGTTTGAAACAG+AGG | 0.608096 | 1.3:+5913717 | None:intergenic |
| ATATTCCTCAAGATCACTGG+TGG | 0.611568 | 1.3:+5913316 | None:intergenic |
| AGCCTGTGATGCTGGTTGAA+GGG | 0.611993 | 1.3:+5906723 | None:intergenic |
| TGGGACTTACAAGCCCAGGT+TGG | 0.613288 | 1.3:-5909410 | MS.gene051612:CDS |
| TATCAAGCTGAGATTTCGCA+AGG | 0.613962 | 1.3:-5913256 | MS.gene051612:CDS |
| ACCTTGATTACTGATCTCAC+TGG | 0.613967 | 1.3:-5913205 | MS.gene051612:CDS |
| AAGAACACCACAAACATCAC+CGG | 0.614174 | 1.3:+5912973 | None:intergenic |
| GAGTCCTTTAGAACCCATCA+TGG | 0.615317 | 1.3:+5909025 | None:intergenic |
| TTCATGGACCAACAATGTCA+TGG | 0.616001 | 1.3:-5908626 | MS.gene051612:CDS |
| CTCTCCCTAACTAATCCAGA+AGG | 0.616376 | 1.3:+5911359 | None:intergenic |
| GTTACATATCCTTCAACTCA+CGG | 0.616918 | 1.3:-5909754 | MS.gene051612:CDS |
| CACCAATAGGACCCATGCCA+GGG | 0.618161 | 1.3:+5909322 | None:intergenic |
| TGAGGACCACCATAACCCAT+TGG | 0.618896 | 1.3:+5912773 | None:intergenic |
| AGCAATGAAGCATTTGACAT+AGG | 0.619218 | 1.3:+5913178 | None:intergenic |
| ATAATGAAGGTGCCAACTGG+TGG | 0.619660 | 1.3:-5909143 | MS.gene051612:intron |
| GGTGTTCCAATGGGTTATGG+TGG | 0.622676 | 1.3:-5912779 | MS.gene051612:CDS |
| GTATACTGAGTATACCAAGC+TGG | 0.623740 | 1.3:+5913283 | None:intergenic |
| CCTGCTAGTGCAGCTATGTG+TGG | 0.626546 | 1.3:-5909993 | MS.gene051612:CDS |
| CATCTGCTCCAATCCAACCT+GGG | 0.626798 | 1.3:+5909397 | None:intergenic |
| ATATCAGCTCCAAACTCACC+AGG | 0.628005 | 1.3:+5912827 | None:intergenic |
| GGAGGCCAAGTATACATGGA+TGG | 0.634003 | 1.3:-5909682 | MS.gene051612:CDS |
| CAACACGGAGCCATGGAGCA+GGG | 0.634723 | 1.3:+5907731 | None:intergenic |
| GTACTTACCACAGGGTGTGA+GGG | 0.635766 | 1.3:+5909273 | None:intergenic |
| ACAGCATGTTTACCATTGGT+AGG | 0.638537 | 1.3:+5907697 | None:intergenic |
| GCATCAGCCATGAGTAGTGA+TGG | 0.640955 | 1.3:+5907790 | None:intergenic |
| AATATGAGCGCTGATCCCCA+AGG | 0.641054 | 1.3:+5909071 | None:intergenic |
| GAAGACGTTTCAGAGTTGCA+CGG | 0.641264 | 1.3:+5913824 | None:intergenic |
| CTCGGGAGCAGCATATCCGT+AGG | 0.643270 | 1.3:-5912640 | MS.gene051612:CDS |
| TCGGGAGCAGCATATCCGTA+GGG | 0.647051 | 1.3:-5912639 | MS.gene051612:CDS |
| ATGGACAAAGCCATATTCCA+GGG | 0.649072 | 1.3:-5907767 | MS.gene051612:CDS |
| GGAATAACACTATTATGCTG+TGG | 0.649282 | 1.3:+5906681 | None:intergenic |
| TGGTGCCAACATGAATGCAC+AGG | 0.649644 | 1.3:-5909662 | MS.gene051612:intron |
| ACTAAAGAAACTTGGAACAG+TGG | 0.650456 | 1.3:-5912016 | MS.gene051612:CDS |
| TTCATTGTACAGGATCCAAG+TGG | 0.652042 | 1.3:+5911135 | None:intergenic |
| TATTGGTGTAAAGAAACACT+TGG | 0.652793 | 1.3:-5909307 | MS.gene051612:CDS |
| ACCATAGGAACTGATGCCAA+GGG | 0.662243 | 1.3:-5909957 | MS.gene051612:CDS |
| AAGATCATCCATGATAATGG+AGG | 0.664150 | 1.3:-5909700 | MS.gene051612:CDS |
| GTAGCCAAGAAAGCAGCATG+AGG | 0.665305 | 1.3:+5912755 | None:intergenic |
| AAGGGTTCATGGTCTTGCTG+GGG | 0.665689 | 1.3:-5912052 | MS.gene051612:CDS |
| ATTATACCAGTCTCAGCACA+TGG | 0.671846 | 1.3:-5910023 | MS.gene051612:CDS |
| ATGTCTTGTGCAGATTGAGA+TGG | 0.674426 | 1.3:+5909370 | None:intergenic |
| TCATTGTACAGGATCCAAGT+GGG | 0.676364 | 1.3:+5911136 | None:intergenic |
| CCAGGGCCACCTCCTCCATG+AGG | 0.682437 | 1.3:+5909339 | None:intergenic |
| TCAGCCATGAGTAGTGATGG+TGG | 0.698155 | 1.3:+5907793 | None:intergenic |
| ATCCAAGTGGGATCATACTG+TGG | 0.704371 | 1.3:+5911148 | None:intergenic |
| AGAAACAGCAATGTTTCACG+TGG | 0.715615 | 1.3:-5913667 | MS.gene051612:CDS |
| TATGTGCAACTGTAGTCAAG+AGG | 0.724753 | 1.3:-5910068 | MS.gene051612:intron |
| TCAGCTCCAAACTCACCAGG+AGG | 0.733104 | 1.3:+5912830 | None:intergenic |
| TAGGCCAAAACTTAGCAACA+CGG | 0.737537 | 1.3:+5907716 | None:intergenic |
| CTGGTATAATGCAAACATTG+CGG | 0.743451 | 1.3:+5910036 | None:intergenic |
| GTATAATGCAAACATTGCGG+TGG | 0.743817 | 1.3:+5910039 | None:intergenic |
| GCAGCTGAGATACTACCAAG+TGG | 0.756552 | 1.3:+5909095 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 5906693 | 5913872 | 5906693 | ID=MS.gene051612 |
| chr1.3 | mRNA | 5906693 | 5913872 | 5906693 | ID=MS.gene051612.t1;Parent=MS.gene051612 |
| chr1.3 | exon | 5912607 | 5913872 | 5912607 | ID=MS.gene051612.t1.exon1;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5912607 | 5913872 | 5912607 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5911900 | 5912145 | 5911900 | ID=MS.gene051612.t1.exon2;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5911900 | 5912145 | 5911900 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5911732 | 5911809 | 5911732 | ID=MS.gene051612.t1.exon3;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5911732 | 5911809 | 5911732 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5911329 | 5911429 | 5911329 | ID=MS.gene051612.t1.exon4;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5911329 | 5911429 | 5911329 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5911041 | 5911236 | 5911041 | ID=MS.gene051612.t1.exon5;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5911041 | 5911236 | 5911041 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5910534 | 5910659 | 5910534 | ID=MS.gene051612.t1.exon6;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5910534 | 5910659 | 5910534 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5909890 | 5910075 | 5909890 | ID=MS.gene051612.t1.exon7;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5909890 | 5910075 | 5909890 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5909663 | 5909776 | 5909663 | ID=MS.gene051612.t1.exon8;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5909663 | 5909776 | 5909663 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5909281 | 5909433 | 5909281 | ID=MS.gene051612.t1.exon9;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5909281 | 5909433 | 5909281 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5908968 | 5909156 | 5908968 | ID=MS.gene051612.t1.exon10;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5908968 | 5909156 | 5908968 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5908794 | 5908871 | 5908794 | ID=MS.gene051612.t1.exon11;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5908794 | 5908871 | 5908794 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5908578 | 5908703 | 5908578 | ID=MS.gene051612.t1.exon12;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5908578 | 5908703 | 5908578 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5908364 | 5908462 | 5908364 | ID=MS.gene051612.t1.exon13;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5908364 | 5908462 | 5908364 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5907710 | 5907827 | 5907710 | ID=MS.gene051612.t1.exon14;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5907710 | 5907827 | 5907710 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| chr1.3 | exon | 5906693 | 5906787 | 5906693 | ID=MS.gene051612.t1.exon15;Parent=MS.gene051612.t1 |
| chr1.3 | CDS | 5906693 | 5906787 | 5906693 | ID=cds.MS.gene051612.t1;Parent=MS.gene051612.t1 |
| Gene Sequence |
| Protein sequence |
