Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21471.t1 | XP_003611471.1 | 94 | 537 | 16 | 1 | 1 | 537 | 29 | 549 | 1.40E-283 | 984.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21471.t1 | O49696 | 60.8 | 548 | 150 | 11 | 14 | 522 | 28 | 549 | 4.1e-170 | 599.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21471.t1 | G7JZX5 | 94.0 | 537 | 16 | 1 | 1 | 537 | 29 | 549 | 1.0e-283 | 984.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene21471 | 0.879788 | 9.36E-70 | -1.69E-46 |
| MS.gene049369 | MS.gene21471 | 0.870626 | 1.27E-66 | -1.69E-46 |
| MS.gene049396 | MS.gene21471 | 0.846768 | 1.76E-59 | -1.69E-46 |
| MS.gene050122 | MS.gene21471 | 0.808469 | 3.05E-50 | -1.69E-46 |
| MS.gene050499 | MS.gene21471 | 0.80748 | 4.95E-50 | -1.69E-46 |
| MS.gene050502 | MS.gene21471 | 0.801684 | 8.02E-49 | -1.69E-46 |
| MS.gene050520 | MS.gene21471 | 0.803804 | 2.93E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene21471 | 0.826961 | 2.03E-54 | -1.69E-46 |
| MS.gene050971 | MS.gene21471 | 0.847375 | 1.20E-59 | -1.69E-46 |
| MS.gene05105 | MS.gene21471 | 0.827372 | 1.62E-54 | -1.69E-46 |
| MS.gene051360 | MS.gene21471 | 0.834771 | 2.47E-56 | -1.69E-46 |
| MS.gene051387 | MS.gene21471 | 0.80359 | 3.24E-49 | -1.69E-46 |
| MS.gene051509 | MS.gene21471 | 0.804086 | 2.56E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene21471 | 0.812176 | 4.84E-51 | -1.69E-46 |
| MS.gene051612 | MS.gene21471 | 0.80514 | 1.54E-49 | -1.69E-46 |
| MS.gene051692 | MS.gene21471 | 0.827133 | 1.85E-54 | -1.69E-46 |
| MS.gene051941 | MS.gene21471 | 0.850298 | 1.86E-60 | -1.69E-46 |
| MS.gene052188 | MS.gene21471 | 0.823518 | 1.33E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene21471 | 0.806452 | 8.17E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene21471 | 0.801394 | 9.19E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene21471 | 0.822084 | 2.86E-53 | -1.69E-46 |
| MS.gene052414 | MS.gene21471 | 0.852559 | 4.26E-61 | -1.69E-46 |
| MS.gene052421 | MS.gene21471 | 0.846297 | 2.37E-59 | -1.69E-46 |
| MS.gene052485 | MS.gene21471 | 0.816003 | 6.92E-52 | -1.69E-46 |
| MS.gene052999 | MS.gene21471 | 0.830537 | 2.78E-55 | -1.69E-46 |
| MS.gene053169 | MS.gene21471 | 0.832318 | 1.01E-55 | -1.69E-46 |
| MS.gene05316 | MS.gene21471 | 0.825537 | 4.44E-54 | -1.69E-46 |
| MS.gene053449 | MS.gene21471 | 0.861186 | 1.22E-63 | -1.69E-46 |
| MS.gene053505 | MS.gene21471 | 0.83395 | 3.97E-56 | -1.69E-46 |
| MS.gene053758 | MS.gene21471 | 0.851741 | 7.29E-61 | -1.69E-46 |
| MS.gene053813 | MS.gene21471 | 0.856934 | 2.30E-62 | -1.69E-46 |
| MS.gene053912 | MS.gene21471 | 0.859933 | 2.94E-63 | -1.69E-46 |
| MS.gene054349 | MS.gene21471 | 0.811973 | 5.35E-51 | -1.69E-46 |
| MS.gene054486 | MS.gene21471 | 0.850375 | 1.77E-60 | -1.69E-46 |
| MS.gene054556 | MS.gene21471 | 0.824624 | 7.30E-54 | -1.69E-46 |
| MS.gene05494 | MS.gene21471 | 0.809464 | 1.87E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene21471 | 0.842503 | 2.49E-58 | -1.69E-46 |
| MS.gene055116 | MS.gene21471 | 0.8132 | 2.89E-51 | -1.69E-46 |
| MS.gene055666 | MS.gene21471 | 0.802389 | 5.74E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene21471 | 0.859117 | 5.16E-63 | -1.69E-46 |
| MS.gene055744 | MS.gene21471 | 0.859819 | 3.18E-63 | -1.69E-46 |
| MS.gene055802 | MS.gene21471 | 0.803188 | 3.93E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene21471 | 0.919562 | 3.85E-87 | -1.69E-46 |
| MS.gene055911 | MS.gene21471 | 0.919336 | 5.11E-87 | -1.69E-46 |
| MS.gene05601 | MS.gene21471 | 0.828029 | 1.13E-54 | -1.69E-46 |
| MS.gene056166 | MS.gene21471 | 0.819166 | 1.34E-52 | -1.69E-46 |
| MS.gene056422 | MS.gene21471 | 0.840209 | 9.98E-58 | -1.69E-46 |
| MS.gene056511 | MS.gene21471 | 0.867726 | 1.11E-65 | -1.69E-46 |
| MS.gene056514 | MS.gene21471 | 0.832055 | 1.18E-55 | -1.69E-46 |
| MS.gene05664 | MS.gene21471 | 0.811381 | 7.20E-51 | -1.69E-46 |
| MS.gene05666 | MS.gene21471 | 0.818603 | 1.80E-52 | -1.69E-46 |
| MS.gene057019 | MS.gene21471 | 0.868237 | 7.58E-66 | -1.69E-46 |
| MS.gene057076 | MS.gene21471 | 0.819271 | 1.27E-52 | -1.69E-46 |
| MS.gene057086 | MS.gene21471 | 0.804288 | 2.32E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene21471 | 0.800061 | 1.72E-48 | -1.69E-46 |
| MS.gene057396 | MS.gene21471 | 0.802815 | 4.69E-49 | -1.69E-46 |
| MS.gene057609 | MS.gene21471 | 0.812984 | 3.22E-51 | -1.69E-46 |
| MS.gene057610 | MS.gene21471 | 0.834318 | 3.21E-56 | -1.69E-46 |
| MS.gene057734 | MS.gene21471 | 0.846035 | 2.80E-59 | -1.69E-46 |
| MS.gene057749 | MS.gene21471 | 0.852539 | 4.32E-61 | -1.69E-46 |
| MS.gene057823 | MS.gene21471 | 0.854872 | 9.22E-62 | -1.69E-46 |
| MS.gene057825 | MS.gene21471 | 0.83414 | 3.56E-56 | -1.69E-46 |
| MS.gene057856 | MS.gene21471 | 0.811305 | 7.48E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene21471 | 0.88535 | 8.77E-72 | -1.69E-46 |
| MS.gene058075 | MS.gene21471 | 0.861825 | 7.81E-64 | -1.69E-46 |
| MS.gene058120 | MS.gene21471 | 0.846093 | 2.70E-59 | -1.69E-46 |
| MS.gene058376 | MS.gene21471 | 0.813978 | 1.95E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene21471 | 0.812334 | 4.47E-51 | -1.69E-46 |
| MS.gene058700 | MS.gene21471 | 0.830161 | 3.43E-55 | -1.69E-46 |
| MS.gene058928 | MS.gene21471 | 0.861853 | 7.66E-64 | -1.69E-46 |
| MS.gene058948 | MS.gene21471 | 0.857259 | 1.84E-62 | -1.69E-46 |
| MS.gene058949 | MS.gene21471 | 0.831875 | 1.30E-55 | -1.69E-46 |
| MS.gene058995 | MS.gene21471 | 0.833724 | 4.52E-56 | -1.69E-46 |
| MS.gene059080 | MS.gene21471 | 0.817628 | 2.99E-52 | -1.69E-46 |
| MS.gene059082 | MS.gene21471 | 0.821545 | 3.81E-53 | -1.69E-46 |
| MS.gene059366 | MS.gene21471 | 0.830244 | 3.28E-55 | -1.69E-46 |
| MS.gene059368 | MS.gene21471 | 0.831305 | 1.80E-55 | -1.69E-46 |
| MS.gene059402 | MS.gene21471 | -0.81486 | 1.24E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene21471 | 0.83203 | 1.19E-55 | -1.69E-46 |
| MS.gene059455 | MS.gene21471 | 0.833429 | 5.36E-56 | -1.69E-46 |
| MS.gene059462 | MS.gene21471 | 0.83121 | 1.90E-55 | -1.69E-46 |
| MS.gene059674 | MS.gene21471 | 0.968684 | 4.99E-129 | -1.69E-46 |
| MS.gene059680 | MS.gene21471 | 0.807217 | 5.63E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene21471 | 0.820873 | 5.45E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene21471 | 0.800421 | 1.45E-48 | -1.69E-46 |
| MS.gene059695 | MS.gene21471 | 0.800982 | 1.12E-48 | -1.69E-46 |
| MS.gene059711 | MS.gene21471 | 0.85707 | 2.10E-62 | -1.69E-46 |
| MS.gene059807 | MS.gene21471 | 0.885069 | 1.12E-71 | -1.69E-46 |
| MS.gene059876 | MS.gene21471 | 0.826927 | 2.07E-54 | -1.69E-46 |
| MS.gene060372 | MS.gene21471 | 0.877476 | 6.09E-69 | -1.69E-46 |
| MS.gene060403 | MS.gene21471 | 0.804903 | 1.73E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene21471 | 0.818826 | 1.60E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene21471 | 0.858624 | 7.25E-63 | -1.69E-46 |
| MS.gene06097 | MS.gene21471 | 0.825376 | 4.85E-54 | -1.69E-46 |
| MS.gene061154 | MS.gene21471 | 0.812274 | 4.60E-51 | -1.69E-46 |
| MS.gene061214 | MS.gene21471 | 0.800604 | 1.33E-48 | -1.69E-46 |
| MS.gene061215 | MS.gene21471 | 0.802106 | 6.57E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058007 | MS.gene21471 | PPI |
| MS.gene015314 | MS.gene21471 | PPI |
| MS.gene011647 | MS.gene21471 | PPI |
| MS.gene21471 | MS.gene09658 | PPI |
| MS.gene60397 | MS.gene21471 | PPI |
| MS.gene011648 | MS.gene21471 | PPI |
| MS.gene011649 | MS.gene21471 | PPI |
| MS.gene09658 | MS.gene21471 | PPI |
| MS.gene058006 | MS.gene21471 | PPI |
| MS.gene60398 | MS.gene21471 | PPI |
| MS.gene059674 | MS.gene21471 | PPI |
| MS.gene60396 | MS.gene21471 | PPI |
| MS.gene46347 | MS.gene21471 | PPI |
| MS.gene21471 | MS.gene46346 | PPI |
| MS.gene019141 | MS.gene21471 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21471.t1 | MTR_5g014310 | 96.089 | 537 | 5 | 1 | 1 | 537 | 29 | 549 | 0.0 | 1054 |
| MS.gene21471.t1 | MTR_4g098570 | 75.651 | 538 | 100 | 6 | 4 | 537 | 24 | 534 | 0.0 | 780 |
| MS.gene21471.t1 | MTR_4g098610 | 72.575 | 536 | 116 | 5 | 4 | 535 | 24 | 532 | 0.0 | 720 |
| MS.gene21471.t1 | MTR_1g115140 | 58.022 | 536 | 202 | 5 | 7 | 537 | 19 | 536 | 0.0 | 615 |
| MS.gene21471.t1 | MTR_1g115175 | 59.032 | 537 | 195 | 7 | 7 | 537 | 15 | 532 | 0.0 | 602 |
| MS.gene21471.t1 | MTR_1g115190 | 57.169 | 537 | 204 | 6 | 7 | 535 | 16 | 534 | 0.0 | 585 |
| MS.gene21471.t1 | MTR_4g051575 | 41.713 | 362 | 183 | 5 | 14 | 367 | 19 | 360 | 2.53e-88 | 280 |
| MS.gene21471.t1 | MTR_1g077660 | 39.178 | 365 | 198 | 4 | 25 | 388 | 42 | 383 | 6.08e-88 | 279 |
| MS.gene21471.t1 | MTR_1g077670 | 39.394 | 363 | 197 | 4 | 25 | 386 | 48 | 388 | 2.59e-87 | 278 |
| MS.gene21471.t1 | MTR_2g087288 | 41.088 | 331 | 172 | 5 | 30 | 358 | 38 | 347 | 5.77e-84 | 268 |
| MS.gene21471.t1 | MTR_7g106260 | 39.722 | 360 | 190 | 5 | 30 | 386 | 43 | 378 | 1.78e-81 | 262 |
| MS.gene21471.t1 | MTR_8g104110 | 32.830 | 530 | 296 | 13 | 15 | 508 | 50 | 555 | 2.45e-78 | 257 |
| MS.gene21471.t1 | MTR_6g084680 | 32.000 | 550 | 297 | 16 | 12 | 518 | 71 | 586 | 4.14e-77 | 254 |
| MS.gene21471.t1 | MTR_8g104130 | 32.171 | 516 | 281 | 10 | 30 | 508 | 60 | 543 | 4.34e-74 | 246 |
| MS.gene21471.t1 | MTR_1g111250 | 33.267 | 505 | 279 | 14 | 28 | 508 | 73 | 543 | 5.84e-73 | 242 |
| MS.gene21471.t1 | MTR_7g094770 | 35.693 | 339 | 183 | 6 | 34 | 364 | 61 | 372 | 2.29e-71 | 235 |
| MS.gene21471.t1 | MTR_2g087285 | 36.389 | 360 | 208 | 5 | 30 | 388 | 38 | 377 | 2.99e-70 | 232 |
| MS.gene21471.t1 | MTR_8g104120 | 30.669 | 538 | 299 | 13 | 15 | 508 | 46 | 553 | 3.76e-67 | 227 |
| MS.gene21471.t1 | MTR_0710s0020 | 58.919 | 185 | 59 | 2 | 7 | 191 | 16 | 183 | 1.60e-60 | 198 |
| MS.gene21471.t1 | MTR_4g051575 | 42.534 | 221 | 123 | 2 | 148 | 367 | 9 | 226 | 3.74e-55 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21471.t1 | AT4G17970 | 60.766 | 548 | 150 | 11 | 14 | 522 | 28 | 549 | 0.0 | 639 |
| MS.gene21471.t1 | AT5G46610 | 59.619 | 525 | 159 | 7 | 25 | 522 | 37 | 535 | 0.0 | 594 |
| MS.gene21471.t1 | AT5G46600 | 57.367 | 509 | 173 | 8 | 25 | 509 | 38 | 526 | 0.0 | 557 |
| MS.gene21471.t1 | AT5G46610 | 55.810 | 525 | 155 | 7 | 25 | 522 | 37 | 511 | 0.0 | 544 |
| MS.gene21471.t1 | AT5G46610 | 58.765 | 405 | 131 | 5 | 145 | 522 | 93 | 488 | 1.71e-156 | 456 |
| MS.gene21471.t1 | AT4G00910 | 37.158 | 366 | 210 | 4 | 25 | 388 | 54 | 401 | 3.34e-87 | 278 |
| MS.gene21471.t1 | AT1G08440 | 41.742 | 333 | 173 | 4 | 30 | 360 | 14 | 327 | 1.69e-84 | 271 |
| MS.gene21471.t1 | AT3G18440 | 32.752 | 516 | 294 | 11 | 25 | 508 | 75 | 569 | 1.70e-78 | 258 |
| MS.gene21471.t1 | AT1G08430 | 38.567 | 363 | 198 | 6 | 30 | 386 | 14 | 357 | 1.80e-76 | 250 |
| MS.gene21471.t1 | AT3G11680 | 37.173 | 382 | 216 | 4 | 7 | 386 | 14 | 373 | 8.42e-76 | 248 |
| MS.gene21471.t1 | AT3G11680 | 37.173 | 382 | 216 | 4 | 7 | 386 | 16 | 375 | 8.59e-76 | 248 |
| MS.gene21471.t1 | AT1G18420 | 31.569 | 529 | 285 | 12 | 26 | 508 | 80 | 577 | 5.12e-73 | 243 |
| MS.gene21471.t1 | AT2G27240 | 38.462 | 364 | 197 | 7 | 30 | 391 | 14 | 352 | 9.19e-72 | 237 |
| MS.gene21471.t1 | AT1G18420 | 31.429 | 525 | 283 | 12 | 30 | 508 | 1 | 494 | 1.70e-71 | 237 |
| MS.gene21471.t1 | AT2G27240 | 36.082 | 388 | 199 | 6 | 30 | 391 | 14 | 378 | 1.25e-68 | 229 |
| MS.gene21471.t1 | AT2G17470 | 31.028 | 506 | 294 | 15 | 30 | 508 | 32 | 509 | 4.24e-66 | 224 |
| MS.gene21471.t1 | AT2G17470 | 31.028 | 506 | 294 | 15 | 30 | 508 | 54 | 531 | 8.25e-66 | 223 |
| MS.gene21471.t1 | AT1G68600 | 30.874 | 515 | 290 | 15 | 28 | 508 | 47 | 529 | 2.56e-62 | 214 |
| MS.gene21471.t1 | AT1G25480 | 30.682 | 528 | 292 | 16 | 23 | 508 | 46 | 541 | 6.60e-61 | 210 |
| MS.gene21471.t1 | AT4G17585 | 63.380 | 71 | 21 | 2 | 14 | 83 | 28 | 94 | 7.07e-20 | 87.0 |
Find 110 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGCTTCTTTGTTGTATT+TGG | 0.117643 | 5.3:-7476432 | MS.gene21471:CDS |
| ATTCTTATAACCTTTGTATA+TGG | 0.174550 | 5.3:+7474605 | None:intergenic |
| AAGACGAGGTTGAGACTTTA+TGG | 0.242182 | 5.3:+7473900 | None:intergenic |
| GACACTGTTAGCTGGATTAT+TGG | 0.245806 | 5.3:-7475716 | MS.gene21471:CDS |
| TCATAGTTCTTCTTTATATA+AGG | 0.253399 | 5.3:+7475220 | None:intergenic |
| TCATCTTCATGAAGCTTTAC+AGG | 0.259778 | 5.3:-7473935 | MS.gene21471:CDS |
| TGTGGAAACAGTTGCAAAAT+TGG | 0.260709 | 5.3:-7473599 | MS.gene21471:CDS |
| ACTCTTCTGCATTGCTTGAT+TGG | 0.276649 | 5.3:-7473756 | MS.gene21471:CDS |
| CAAAGGTTATAAGAATGTTT+TGG | 0.284044 | 5.3:-7474598 | MS.gene21471:CDS |
| AGGTCTTCTCCTGACCAATT+TGG | 0.289100 | 5.3:+7475049 | None:intergenic |
| AGATGATCGGAGAGTATTTC+GGG | 0.298853 | 5.3:+7473952 | None:intergenic |
| GCATATTGATGTTTCCAAAT+TGG | 0.300248 | 5.3:-7475063 | MS.gene21471:CDS |
| AGATTGGACAGAGTGCAATT+TGG | 0.311610 | 5.3:-7476391 | MS.gene21471:CDS |
| TTGCATACCCTCTATAGATT+TGG | 0.312634 | 5.3:+7474991 | None:intergenic |
| ACATCAATATGCTCATTATA+AGG | 0.334201 | 5.3:+7475074 | None:intergenic |
| AGCTTCTTTGTTGTATTTGG+TGG | 0.345036 | 5.3:-7476429 | MS.gene21471:CDS |
| TGCATGGTTGTGTTTGTGTT+TGG | 0.345549 | 5.3:+7473867 | None:intergenic |
| GTTGGGAGCCAAGGCATTCT+AGG | 0.347134 | 5.3:-7474445 | MS.gene21471:CDS |
| AAGATGATCGGAGAGTATTT+CGG | 0.350796 | 5.3:+7473951 | None:intergenic |
| CTGTTTGAGATCAGAAATTC+AGG | 0.351569 | 5.3:-7474336 | MS.gene21471:intron |
| CCAGGCGTTGCATGCAAGTT+GGG | 0.364061 | 5.3:-7474462 | MS.gene21471:intron |
| TTCTTATAACCTTTGTATAT+GGG | 0.365139 | 5.3:+7474606 | None:intergenic |
| CAACCACGGTGTAGCCGAAT+TGG | 0.384589 | 5.3:+7474369 | None:intergenic |
| GGATTATTGGCATTCATTGT+TGG | 0.386550 | 5.3:-7475703 | MS.gene21471:CDS |
| TCTACTGCTTTCAAGCTTGA+AGG | 0.394471 | 5.3:-7475019 | MS.gene21471:CDS |
| ATTGAGGAAGTTGAAGAACT+TGG | 0.400564 | 5.3:-7473568 | MS.gene21471:CDS |
| AAAGGGCTTAACAGAGGATT+GGG | 0.400724 | 5.3:-7475739 | MS.gene21471:CDS |
| ATAAAGAAGAACTATGACTA+TGG | 0.401454 | 5.3:-7475214 | MS.gene21471:CDS |
| GATTGGACAGAGTGCAATTT+GGG | 0.401481 | 5.3:-7476390 | MS.gene21471:CDS |
| GAGCCACTTTACCATGAGAT+TGG | 0.434876 | 5.3:-7476407 | MS.gene21471:CDS |
| GAGCTTTAGCTACTTATATG+AGG | 0.435607 | 5.3:-7475249 | MS.gene21471:CDS |
| AATGCATGGATCACCCTTCT+CGG | 0.437349 | 5.3:+7476476 | None:intergenic |
| GCGACAGTTTCTTATGCTGT+TGG | 0.449688 | 5.3:+7473984 | None:intergenic |
| ACTAACCAGTGTTTCATCAA+TGG | 0.450544 | 5.3:+7474566 | None:intergenic |
| TTGATGTTTCCAAATTGGTC+AGG | 0.452448 | 5.3:-7475058 | MS.gene21471:CDS |
| CGGAACAATTTGCCTTCTCA+TGG | 0.454690 | 5.3:-7473466 | MS.gene21471:CDS |
| AAAATTGGATCTTGTTATTG+AGG | 0.463462 | 5.3:-7473584 | MS.gene21471:CDS |
| CAAAGGGCTTAACAGAGGAT+TGG | 0.468379 | 5.3:-7475740 | MS.gene21471:CDS |
| GGAGCTGTTCTTCGCCAATT+CGG | 0.468447 | 5.3:-7474383 | MS.gene21471:CDS |
| AACATGGCTCTAACTGATCT+TGG | 0.468885 | 5.3:+7474063 | None:intergenic |
| TTGGAAGTATACTTTCCAAC+AGG | 0.469451 | 5.3:-7476071 | MS.gene21471:intron |
| AAGGCAAATGGCACATCCTA+TGG | 0.471313 | 5.3:+7475093 | None:intergenic |
| TATGCTCATTATAAGGCAAA+TGG | 0.472401 | 5.3:+7475081 | None:intergenic |
| TTGAGGAAGTTGAAGAACTT+GGG | 0.474676 | 5.3:-7473567 | MS.gene21471:CDS |
| ATCTCTCAAGCTGTTATCAT+TGG | 0.475130 | 5.3:-7475652 | MS.gene21471:CDS |
| TCAGATGATTTGATATCTCC+AGG | 0.475473 | 5.3:+7474633 | None:intergenic |
| GTGATCCATGCATTCAAAGT+TGG | 0.477949 | 5.3:-7476467 | MS.gene21471:CDS |
| AAAGATGCAAAAGCAGCAAA+AGG | 0.479326 | 5.3:+7473625 | None:intergenic |
| TGCTTTAAAGAGTTTAGAGC+TGG | 0.480144 | 5.3:-7473535 | MS.gene21471:CDS |
| TACACCGTGGTTGCTCTACA+TGG | 0.480998 | 5.3:-7474359 | MS.gene21471:CDS |
| TGTTCAAGGATCCATGCATA+AGG | 0.481436 | 5.3:-7474044 | MS.gene21471:CDS |
| GGAGAGTTCCTAGCTTGGCT+TGG | 0.484559 | 5.3:-7476529 | MS.gene21471:CDS |
| ATCAGTTAGAGCCATGTTCA+AGG | 0.486726 | 5.3:-7474058 | MS.gene21471:CDS |
| GGTAGACATGGAAAAGGCTC+TGG | 0.488167 | 5.3:-7473805 | MS.gene21471:CDS |
| GTTGTGCTTGAGTTCACTGC+TGG | 0.488607 | 5.3:-7476350 | MS.gene21471:CDS |
| GCCAGGCGTTGCATGCAAGT+TGG | 0.489802 | 5.3:-7474463 | MS.gene21471:intron |
| CAGGGGCAACTTTATGCAAA+GGG | 0.490713 | 5.3:-7475756 | MS.gene21471:CDS |
| TGCATGCAAGTTGGGAGCCA+AGG | 0.493195 | 5.3:-7474454 | MS.gene21471:CDS |
| AGGTCTTGCCAAATCTATAG+AGG | 0.499136 | 5.3:-7474999 | MS.gene21471:CDS |
| GGATTGGGGACACTGTTAGC+TGG | 0.502209 | 5.3:-7475724 | MS.gene21471:CDS |
| GTTTGAGCATGTTGTTTGCA+TGG | 0.505188 | 5.3:+7473851 | None:intergenic |
| GCTTGGCTTGGAAGACTACA+TGG | 0.510395 | 5.3:-7476517 | MS.gene21471:CDS |
| TGGCAGCAATATGTAAAAGT+TGG | 0.518460 | 5.3:-7474404 | MS.gene21471:CDS |
| GTCTATTCAATTCCATGAGA+AGG | 0.518933 | 5.3:+7473454 | None:intergenic |
| ATGCATAAGGGTTGCAGCAG+AGG | 0.527389 | 5.3:-7474031 | MS.gene21471:CDS |
| TGGAAGACTACATGGAATGT+TGG | 0.532227 | 5.3:-7476509 | MS.gene21471:CDS |
| TATGGAGAAATTGATAGCCC+TGG | 0.532775 | 5.3:-7474651 | MS.gene21471:CDS |
| ACAAACCAACTTTGAATGCA+TGG | 0.533262 | 5.3:+7476462 | None:intergenic |
| TGAAAGCAGTAGAATTATGT+AGG | 0.536646 | 5.3:+7475029 | None:intergenic |
| GCTAAGGAGAGTTCCTAGCT+TGG | 0.543789 | 5.3:-7476534 | MS.gene21471:CDS |
| GTTCAAGGATCCATGCATAA+GGG | 0.544118 | 5.3:-7474043 | MS.gene21471:CDS |
| AAACTAGCTGCTGCACAAGT+TGG | 0.544612 | 5.3:-7473832 | MS.gene21471:CDS |
| AAAATCCATTGATGAAACAC+TGG | 0.544964 | 5.3:-7474571 | MS.gene21471:intron |
| TGTCCAATCTCATGGTAAAG+TGG | 0.545106 | 5.3:+7476404 | None:intergenic |
| TGACAGTACCTAGAATGCCT+TGG | 0.545491 | 5.3:+7474437 | None:intergenic |
| GTAGTCTTCCAAGCCAAGCT+AGG | 0.551573 | 5.3:+7476521 | None:intergenic |
| GGCACATCCTATGGCAATGG+AGG | 0.551636 | 5.3:+7475102 | None:intergenic |
| CAAGTTGGTCAAGGTAGACA+TGG | 0.553561 | 5.3:-7473817 | MS.gene21471:CDS |
| GCAGGGGCAACTTTATGCAA+AGG | 0.555764 | 5.3:-7475757 | MS.gene21471:intron |
| GGTCAAGGTAGACATGGAAA+AGG | 0.558508 | 5.3:-7473811 | MS.gene21471:CDS |
| TTGGGCTGTCATGACTGTTG+TGG | 0.564819 | 5.3:-7476372 | MS.gene21471:CDS |
| TTGCACTCTGTCCAATCTCA+TGG | 0.565734 | 5.3:+7476396 | None:intergenic |
| CGCATATCCTCCATTGCCAT+AGG | 0.573769 | 5.3:-7475109 | MS.gene21471:CDS |
| TTGCAAATGCATCATCTCAT+CGG | 0.574979 | 5.3:-7475675 | MS.gene21471:CDS |
| AATGGCACATCCTATGGCAA+TGG | 0.578492 | 5.3:+7475099 | None:intergenic |
| TAAAGCTTCATGAAGATGAT+CGG | 0.580738 | 5.3:+7473939 | None:intergenic |
| TCTGCTGCAACCCTTATGCA+TGG | 0.600193 | 5.3:+7474033 | None:intergenic |
| TTGGATATGAAGATCCGAGA+AGG | 0.603501 | 5.3:-7476490 | MS.gene21471:CDS |
| TGCAGTCGAAGGAAAACGAA+AGG | 0.603800 | 5.3:-7473711 | MS.gene21471:CDS |
| AGATTCATTAATGCAGTCGA+AGG | 0.607766 | 5.3:-7473722 | MS.gene21471:CDS |
| TTATGCAAAGGGCTTAACAG+AGG | 0.619114 | 5.3:-7475745 | MS.gene21471:CDS |
| AGAGTATTTCGGGAGAGCAA+TGG | 0.619871 | 5.3:+7473962 | None:intergenic |
| GCTGCTGCACAAGTTGGTCA+AGG | 0.626016 | 5.3:-7473826 | MS.gene21471:CDS |
| GGTACTGTCACAAATTTCCA+TGG | 0.628747 | 5.3:-7474424 | MS.gene21471:CDS |
| TCTTCAACACACTGTCCACA+CGG | 0.631610 | 5.3:+7475143 | None:intergenic |
| GGTCTTGCCAAATCTATAGA+GGG | 0.633364 | 5.3:-7474998 | MS.gene21471:intron |
| TGGATATGAAGATCCGAGAA+GGG | 0.636881 | 5.3:-7476489 | MS.gene21471:CDS |
| CAGATGATTTGATATCTCCA+GGG | 0.645408 | 5.3:+7474634 | None:intergenic |
| TGGAGATATCAAATCATCTG+AGG | 0.646682 | 5.3:-7474631 | MS.gene21471:CDS |
| TCTGAGGATCCCATATACAA+AGG | 0.659738 | 5.3:-7474615 | MS.gene21471:CDS |
| TATGCATGGATCCTTGAACA+TGG | 0.660343 | 5.3:+7474047 | None:intergenic |
| CACTAGTCTTGAATTCTCTG+AGG | 0.665482 | 5.3:-7473653 | MS.gene21471:CDS |
| TGCTTTGTCAAGTTACCGTG+TGG | 0.668331 | 5.3:-7475158 | MS.gene21471:CDS |
| TTCCGCGACACATCAACTCG+AGG | 0.668844 | 5.3:+7473484 | None:intergenic |
| AACCTCGAGTTGATGTGTCG+CGG | 0.672079 | 5.3:-7473486 | MS.gene21471:CDS |
| TTGGAACCTAAGAAAAGACG+AGG | 0.683495 | 5.3:+7473886 | None:intergenic |
| ACAGCCATGTAGAGCAACCA+CGG | 0.689758 | 5.3:+7474355 | None:intergenic |
| TCGCCAATTCGGCTACACCG+TGG | 0.698242 | 5.3:-7474372 | MS.gene21471:CDS |
| AAGGGCTTAACAGAGGATTG+GGG | 0.729918 | 5.3:-7475738 | MS.gene21471:CDS |
| TGATATTGTTGTGACTTGTG+AGG | 0.758451 | 5.3:-7473509 | MS.gene21471:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAAATTTAGTAAGA+GGG | - | chr5.3:7473873-7473892 | MS.gene21471:CDS | 10.0% |
| !! | TAATATAAAAATTTAGTAAG+AGG | - | chr5.3:7473872-7473891 | MS.gene21471:CDS | 10.0% |
| !! | ACATAAAGAAAATTTAATTG+AGG | + | chr5.3:7473727-7473746 | None:intergenic | 15.0% |
| !! | CTGTTAAATATATTTAGTAA+CGG | - | chr5.3:7475071-7475090 | MS.gene21471:CDS | 15.0% |
| !! | TAATGAATATATGTTATAAC+AGG | + | chr5.3:7475925-7475944 | None:intergenic | 15.0% |
| !! | AATTAAAATTAACCTAGAGA+TGG | + | chr5.3:7475503-7475522 | None:intergenic | 20.0% |
| !! | ATTCTTATAACCTTTGTATA+TGG | + | chr5.3:7475432-7475451 | None:intergenic | 20.0% |
| !! | TAGACTATGATATCATATTA+AGG | + | chr5.3:7474051-7474070 | None:intergenic | 20.0% |
| !! | TCATAGTTCTTCTTTATATA+AGG | + | chr5.3:7474817-7474836 | None:intergenic | 20.0% |
| !! | TTCTTATAACCTTTGTATAT+GGG | + | chr5.3:7475431-7475450 | None:intergenic | 20.0% |
| !! | TTTCTTTATGTAAAAGCTAT+TGG | - | chr5.3:7473736-7473755 | MS.gene21471:CDS | 20.0% |
| !!! | AATCCAAGTTTTACATTTAA+AGG | - | chr5.3:7473767-7473786 | MS.gene21471:CDS | 20.0% |
| !!! | ACTAGGACATTTTTTTTTTA+AGG | + | chr5.3:7474202-7474221 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTAAGGAAGGA+AGG | + | chr5.3:7474194-7474213 | None:intergenic | 20.0% |
| !!! | TGTGTCAATGAATATTTTTA+TGG | - | chr5.3:7475365-7475384 | MS.gene21471:intron | 20.0% |
| !!! | TTTCAAACTTTGTGTTTTTT+TGG | - | chr5.3:7474252-7474271 | MS.gene21471:intron | 20.0% |
| ! | AATGTTAACAAATAGTCACA+AGG | - | chr5.3:7474673-7474692 | MS.gene21471:CDS | 25.0% |
| ! | AATTCTGTTACATTAATCAC+TGG | + | chr5.3:7474591-7474610 | None:intergenic | 25.0% |
| ! | ACATCAATATGCTCATTATA+AGG | + | chr5.3:7474963-7474982 | None:intergenic | 25.0% |
| ! | ATAAAGAAGAACTATGACTA+TGG | - | chr5.3:7474820-7474839 | MS.gene21471:intron | 25.0% |
| ! | ATATCATAGTCTATTCATTC+GGG | - | chr5.3:7474058-7474077 | MS.gene21471:CDS | 25.0% |
| ! | CATGTGGAAAAAAGAAAATA+TGG | + | chr5.3:7475258-7475277 | None:intergenic | 25.0% |
| ! | GATATCATAGTCTATTCATT+CGG | - | chr5.3:7474057-7474076 | MS.gene21471:CDS | 25.0% |
| ! | TATACTTCTTAAACGACTTT+GGG | + | chr5.3:7473914-7473933 | None:intergenic | 25.0% |
| ! | TCTCCTTTAAATGTAAAACT+TGG | + | chr5.3:7473773-7473792 | None:intergenic | 25.0% |
| ! | TGTCTTGATTTAGATTTACA+AGG | + | chr5.3:7475321-7475340 | None:intergenic | 25.0% |
| ! | TTTACAAGGTAAAATTCACA+AGG | + | chr5.3:7475307-7475326 | None:intergenic | 25.0% |
| !! | CAAAGGTTATAAGAATGTTT+TGG | - | chr5.3:7475436-7475455 | MS.gene21471:intron | 25.0% |
| !! | TTTAGCTTCTTTGTTGTATT+TGG | - | chr5.3:7473602-7473621 | MS.gene21471:CDS | 25.0% |
| !!! | AAAATTGGATCTTGTTATTG+AGG | - | chr5.3:7476450-7476469 | MS.gene21471:CDS | 25.0% |
| !!! | GGACATTTTTTTTTTAAGGA+AGG | + | chr5.3:7474198-7474217 | None:intergenic | 25.0% |
| !!! | GTATTTGTTTTCTTTTGAAC+CGG | - | chr5.3:7475895-7475914 | MS.gene21471:intron | 25.0% |
| !!! | TATTTGTTTTCTTTTGAACC+GGG | - | chr5.3:7475896-7475915 | MS.gene21471:intron | 25.0% |
| AAAATCCATTGATGAAACAC+TGG | - | chr5.3:7475463-7475482 | MS.gene21471:intron | 30.0% | |
| AACTTATAACGTTACGTAAG+AGG | + | chr5.3:7473828-7473847 | None:intergenic | 30.0% | |
| AAGTATACTTGTATACCTGT+TGG | + | chr5.3:7473981-7474000 | None:intergenic | 30.0% | |
| ACAGGTATACAAGTATACTT+TGG | - | chr5.3:7473981-7474000 | MS.gene21471:CDS | 30.0% | |
| ATACTTCTTAAACGACTTTG+GGG | + | chr5.3:7473913-7473932 | None:intergenic | 30.0% | |
| GCATATTGATGTTTCCAAAT+TGG | - | chr5.3:7474971-7474990 | MS.gene21471:intron | 30.0% | |
| GTATACTTCTTAAACGACTT+TGG | + | chr5.3:7473915-7473934 | None:intergenic | 30.0% | |
| TAAAGCTTCATGAAGATGAT+CGG | + | chr5.3:7476098-7476117 | None:intergenic | 30.0% | |
| TATATGAGATCTCGATCATA+TGG | - | chr5.3:7474459-7474478 | MS.gene21471:CDS | 30.0% | |
| TATGCTCATTATAAGGCAAA+TGG | + | chr5.3:7474956-7474975 | None:intergenic | 30.0% | |
| TCTAAATCAAGACATAGTCA+AGG | - | chr5.3:7475327-7475346 | MS.gene21471:intron | 30.0% | |
| TCTTACGTAACGTTATAAGT+TGG | - | chr5.3:7473827-7473846 | MS.gene21471:CDS | 30.0% | |
| TGAAAAGAGTTTATACAGAG+AGG | - | chr5.3:7473800-7473819 | MS.gene21471:CDS | 30.0% | |
| TGAAAGCAGTAGAATTATGT+AGG | + | chr5.3:7475008-7475027 | None:intergenic | 30.0% | |
| TTAATACATTCCTTCGAATG+AGG | - | chr5.3:7475521-7475540 | MS.gene21471:intron | 30.0% | |
| TTAATCCCTTAAATTGTGAC+CGG | - | chr5.3:7475752-7475771 | MS.gene21471:CDS | 30.0% | |
| TTAATGTGTGGATAAATTGG+CGG | + | chr5.3:7474088-7474107 | None:intergenic | 30.0% | |
| TTGAACACAAGATTTGATCT+CGG | + | chr5.3:7475839-7475858 | None:intergenic | 30.0% | |
| ! | ATAGCAATTTTACTCAACTG+AGG | + | chr5.3:7476361-7476380 | None:intergenic | 30.0% |
| ! | TCTTAATATGCGATTTTCTG+CGG | - | chr5.3:7474748-7474767 | MS.gene21471:intron | 30.0% |
| !! | AAACACAGTTTTATGCTGTT+TGG | - | chr5.3:7473944-7473963 | MS.gene21471:CDS | 30.0% |
| !! | ATGATAATTTGCTTTGCATG+TGG | + | chr5.3:7475274-7475293 | None:intergenic | 30.0% |
| !! | ATTTGTTTTCTTTTGAACCG+GGG | - | chr5.3:7475897-7475916 | MS.gene21471:intron | 30.0% |
| !!! | CGTTATAAGTTGGTTTTGTA+AGG | - | chr5.3:7473837-7473856 | MS.gene21471:CDS | 30.0% |
| !!! | TTTTTTTTAAGGAAGGAAGG+AGG | + | chr5.3:7474191-7474210 | None:intergenic | 30.0% |
| AAAGATGCAAAAGCAGCAAA+AGG | + | chr5.3:7476412-7476431 | None:intergenic | 35.0% | |
| AAGTTCAAACACATGCAACT+AGG | + | chr5.3:7474219-7474238 | None:intergenic | 35.0% | |
| ACAAACCAACTTTGAATGCA+TGG | + | chr5.3:7473575-7473594 | None:intergenic | 35.0% | |
| ACAGTCTTAAACTTACAAGC+CGG | + | chr5.3:7475774-7475793 | None:intergenic | 35.0% | |
| ACTAACCAGTGTTTCATCAA+TGG | + | chr5.3:7475471-7475490 | None:intergenic | 35.0% | |
| AGATTCATTAATGCAGTCGA+AGG | - | chr5.3:7476312-7476331 | MS.gene21471:intron | 35.0% | |
| ATATGTTATAACAGGAACCC+CGG | + | chr5.3:7475917-7475936 | None:intergenic | 35.0% | |
| ATCTCTCAAGCTGTTATCAT+TGG | - | chr5.3:7474382-7474401 | MS.gene21471:CDS | 35.0% | |
| ATGAGGATCTTATATCGCTT+CGG | - | chr5.3:7475538-7475557 | MS.gene21471:intron | 35.0% | |
| ATGATCGAGATCTCATATAG+CGG | + | chr5.3:7474458-7474477 | None:intergenic | 35.0% | |
| ATGGTTTGAACAAGTCGAAT+TGG | - | chr5.3:7474512-7474531 | MS.gene21471:intron | 35.0% | |
| ATTGAGGAAGTTGAAGAACT+TGG | - | chr5.3:7476466-7476485 | MS.gene21471:CDS | 35.0% | |
| CAGATGATTTGATATCTCCA+GGG | + | chr5.3:7475403-7475422 | None:intergenic | 35.0% | |
| GACATGAACACACACTTATT+CGG | + | chr5.3:7474156-7474175 | None:intergenic | 35.0% | |
| GATATAAGATCCTCATTCGA+AGG | + | chr5.3:7475534-7475553 | None:intergenic | 35.0% | |
| GGATTATTGGCATTCATTGT+TGG | - | chr5.3:7474331-7474350 | MS.gene21471:intron | 35.0% | |
| GGCTTAATGTGTGGATAAAT+TGG | + | chr5.3:7474091-7474110 | None:intergenic | 35.0% | |
| GGTTTGAATACCTCGTATTT+CGG | - | chr5.3:7474480-7474499 | MS.gene21471:intron | 35.0% | |
| TAATAGTGCTTAGCGTAAGT+GGG | - | chr5.3:7474111-7474130 | MS.gene21471:intron | 35.0% | |
| TAATGTGTGGATAAATTGGC+GGG | + | chr5.3:7474087-7474106 | None:intergenic | 35.0% | |
| TACTTCTTAAACGACTTTGG+GGG | + | chr5.3:7473912-7473931 | None:intergenic | 35.0% | |
| TCAGATGATTTGATATCTCC+AGG | + | chr5.3:7475404-7475423 | None:intergenic | 35.0% | |
| TCATCTTCATGAAGCTTTAC+AGG | - | chr5.3:7476099-7476118 | MS.gene21471:intron | 35.0% | |
| TGGAGATATCAAATCATCTG+AGG | - | chr5.3:7475403-7475422 | MS.gene21471:intron | 35.0% | |
| TGGCAGCAATATGTAAAAGT+TGG | - | chr5.3:7475630-7475649 | MS.gene21471:intron | 35.0% | |
| TGTGGAAACAGTTGCAAAAT+TGG | - | chr5.3:7476435-7476454 | MS.gene21471:CDS | 35.0% | |
| TTGAGGAAGTTGAAGAACTT+GGG | - | chr5.3:7476467-7476486 | MS.gene21471:CDS | 35.0% | |
| TTGATGTTTCCAAATTGGTC+AGG | - | chr5.3:7474976-7474995 | MS.gene21471:intron | 35.0% | |
| TTGCAAATGCATCATCTCAT+CGG | - | chr5.3:7474359-7474378 | MS.gene21471:CDS | 35.0% | |
| TTGCATACCCTCTATAGATT+TGG | + | chr5.3:7475046-7475065 | None:intergenic | 35.0% | |
| ! | AACAAACGTGTGCATGTTTT+TGG | - | chr5.3:7473471-7473490 | MS.gene21471:CDS | 35.0% |
| ! | ACTTTTACATATTGCTGCCA+TGG | + | chr5.3:7475630-7475649 | None:intergenic | 35.0% |
| ! | AGCTTCTTTGTTGTATTTGG+TGG | - | chr5.3:7473605-7473624 | MS.gene21471:CDS | 35.0% |
| ! | ATATCGCTTCGGTATTGAAT+TGG | - | chr5.3:7475549-7475568 | MS.gene21471:intron | 35.0% |
| ! | CTGTTTGAGATCAGAAATTC+AGG | - | chr5.3:7475698-7475717 | MS.gene21471:CDS | 35.0% |
| ! | GAGCTTTAGCTACTTATATG+AGG | - | chr5.3:7474785-7474804 | MS.gene21471:intron | 35.0% |
| ! | TGATATTGTTGTGACTTGTG+AGG | - | chr5.3:7476525-7476544 | MS.gene21471:CDS | 35.0% |
| ! | TTGGAAGTATACTTTCCAAC+AGG | - | chr5.3:7473963-7473982 | MS.gene21471:CDS | 35.0% |
| !! | AAGATGATCGGAGAGTATTT+CGG | + | chr5.3:7476086-7476105 | None:intergenic | 35.0% |
| !! | GTCAGTTTTAACACTCGATA+AGG | + | chr5.3:7476260-7476279 | None:intergenic | 35.0% |
| !! | TGCTTTAAAGAGTTTAGAGC+TGG | - | chr5.3:7476499-7476518 | MS.gene21471:CDS | 35.0% |
| !!! | TTTGTGTTTTTTTGGCTGCA+GGG | - | chr5.3:7474260-7474279 | MS.gene21471:intron | 35.0% |
| AAAGGGCTTAACAGAGGATT+GGG | - | chr5.3:7474295-7474314 | MS.gene21471:intron | 40.0% | |
| AAGACGAGGTTGAGACTTTA+TGG | + | chr5.3:7476137-7476156 | None:intergenic | 40.0% | |
| ACAAGCCGGTCACAATTTAA+GGG | + | chr5.3:7475760-7475779 | None:intergenic | 40.0% | |
| ACTCTTCTGCATTGCTTGAT+TGG | - | chr5.3:7476278-7476297 | MS.gene21471:intron | 40.0% | |
| AGATTGGACAGAGTGCAATT+TGG | - | chr5.3:7473643-7473662 | MS.gene21471:CDS | 40.0% | |
| AGGTCTTGCCAAATCTATAG+AGG | - | chr5.3:7475035-7475054 | MS.gene21471:CDS | 40.0% | |
| ATCAGTTAGAGCCATGTTCA+AGG | - | chr5.3:7475976-7475995 | MS.gene21471:intron | 40.0% | |
| ATCTTGTGTTCAAACACAGC+CGG | - | chr5.3:7475846-7475865 | MS.gene21471:intron | 40.0% | |
| CAAGATTTGATCTCGGAGTT+CGG | + | chr5.3:7475832-7475851 | None:intergenic | 40.0% | |
| CACTTACGCTAAGCACTATT+AGG | + | chr5.3:7474112-7474131 | None:intergenic | 40.0% | |
| CGTATTTCGGCTTCATCAAA+TGG | - | chr5.3:7474493-7474512 | MS.gene21471:intron | 40.0% | |
| CTAATAGTGCTTAGCGTAAG+TGG | - | chr5.3:7474110-7474129 | MS.gene21471:intron | 40.0% | |
| GACACTGTTAGCTGGATTAT+TGG | - | chr5.3:7474318-7474337 | MS.gene21471:intron | 40.0% | |
| GATTGGACAGAGTGCAATTT+GGG | - | chr5.3:7473644-7473663 | MS.gene21471:CDS | 40.0% | |
| GCACTATTAGGCTTAATGTG+TGG | + | chr5.3:7474100-7474119 | None:intergenic | 40.0% | |
| GGTACTGTCACAAATTTCCA+TGG | - | chr5.3:7475610-7475629 | MS.gene21471:intron | 40.0% | |
| GGTCTTGCCAAATCTATAGA+GGG | - | chr5.3:7475036-7475055 | MS.gene21471:CDS | 40.0% | |
| GTGATCCATGCATTCAAAGT+TGG | - | chr5.3:7473567-7473586 | MS.gene21471:CDS | 40.0% | |
| GTTCAAGGATCCATGCATAA+GGG | - | chr5.3:7475991-7476010 | MS.gene21471:intron | 40.0% | |
| TACAAGCCGGTCACAATTTA+AGG | + | chr5.3:7475761-7475780 | None:intergenic | 40.0% | |
| TATGCATGGATCCTTGAACA+TGG | + | chr5.3:7475990-7476009 | None:intergenic | 40.0% | |
| TCTACTGCTTTCAAGCTTGA+AGG | - | chr5.3:7475015-7475034 | MS.gene21471:CDS | 40.0% | |
| TCTGAGGATCCCATATACAA+AGG | - | chr5.3:7475419-7475438 | MS.gene21471:intron | 40.0% | |
| TGATCGAGATCTCATATAGC+GGG | + | chr5.3:7474457-7474476 | None:intergenic | 40.0% | |
| TGCATGGTTGTGTTTGTGTT+TGG | + | chr5.3:7476170-7476189 | None:intergenic | 40.0% | |
| TGGAAGACTACATGGAATGT+TGG | - | chr5.3:7473525-7473544 | MS.gene21471:CDS | 40.0% | |
| TGGATATGAAGATCCGAGAA+GGG | - | chr5.3:7473545-7473564 | MS.gene21471:CDS | 40.0% | |
| TGTCCAATCTCATGGTAAAG+TGG | + | chr5.3:7473633-7473652 | None:intergenic | 40.0% | |
| TGTTCAAGGATCCATGCATA+AGG | - | chr5.3:7475990-7476009 | MS.gene21471:intron | 40.0% | |
| TTAGCGTAAGTGGGTGTATT+GGG | - | chr5.3:7474120-7474139 | MS.gene21471:intron | 40.0% | |
| TTATGCAAAGGGCTTAACAG+AGG | - | chr5.3:7474289-7474308 | MS.gene21471:intron | 40.0% | |
| TTGGAACCTAAGAAAAGACG+AGG | + | chr5.3:7476151-7476170 | None:intergenic | 40.0% | |
| TTGGATATGAAGATCCGAGA+AGG | - | chr5.3:7473544-7473563 | MS.gene21471:CDS | 40.0% | |
| TTTGATGAAGCCGAAATACG+AGG | + | chr5.3:7474493-7474512 | None:intergenic | 40.0% | |
| ! | GTTTGAGCATGTTGTTTGCA+TGG | + | chr5.3:7476186-7476205 | None:intergenic | 40.0% |
| ! | TATGGAGAAATTGATAGCCC+TGG | - | chr5.3:7475383-7475402 | MS.gene21471:intron | 40.0% |
| ! | TCTCAACCTCGTCTTTTCTT+AGG | - | chr5.3:7476142-7476161 | MS.gene21471:intron | 40.0% |
| ! | TGCTTTTGCATCTTTGCTTG+TGG | - | chr5.3:7476417-7476436 | MS.gene21471:CDS | 40.0% |
| !! | AACATGGCTCTAACTGATCT+TGG | + | chr5.3:7475974-7475993 | None:intergenic | 40.0% |
| !! | AGATGATCGGAGAGTATTTC+GGG | + | chr5.3:7476085-7476104 | None:intergenic | 40.0% |
| !! | CACTAGTCTTGAATTCTCTG+AGG | - | chr5.3:7476381-7476400 | MS.gene21471:CDS | 40.0% |
| !! | GTATACTTTGGAATCATGCG+TGG | - | chr5.3:7473993-7474012 | MS.gene21471:CDS | 40.0% |
| !! | TTCTGCGGATTTGTTATTGC+AGG | - | chr5.3:7474763-7474782 | MS.gene21471:intron | 40.0% |
| !!! | ATGTTTTTGGTGAGAGGCTA+AGG | - | chr5.3:7473484-7473503 | MS.gene21471:CDS | 40.0% |
| !!! | CTTTGTGTTTTTTTGGCTGC+AGG | - | chr5.3:7474259-7474278 | MS.gene21471:intron | 40.0% |
| !!! | TTGTGTTTTTTTGGCTGCAG+GGG | - | chr5.3:7474261-7474280 | MS.gene21471:intron | 40.0% |
| AAACTAGCTGCTGCACAAGT+TGG | - | chr5.3:7476202-7476221 | MS.gene21471:intron | 45.0% | |
| AAGGCAAATGGCACATCCTA+TGG | + | chr5.3:7474944-7474963 | None:intergenic | 45.0% | |
| AAGGGCTTAACAGAGGATTG+GGG | - | chr5.3:7474296-7474315 | MS.gene21471:intron | 45.0% | |
| AATGCATGGATCACCCTTCT+CGG | + | chr5.3:7473561-7473580 | None:intergenic | 45.0% | |
| AATGGCACATCCTATGGCAA+TGG | + | chr5.3:7474938-7474957 | None:intergenic | 45.0% | |
| AGGTCTTCTCCTGACCAATT+TGG | + | chr5.3:7474988-7475007 | None:intergenic | 45.0% | |
| AGTCTCTATGTGCCATCTCT+AGG | - | chr5.3:7475488-7475507 | MS.gene21471:intron | 45.0% | |
| CAAAGGGCTTAACAGAGGAT+TGG | - | chr5.3:7474294-7474313 | MS.gene21471:intron | 45.0% | |
| CAGGGGCAACTTTATGCAAA+GGG | - | chr5.3:7474278-7474297 | MS.gene21471:intron | 45.0% | |
| CGGAACAATTTGCCTTCTCA+TGG | - | chr5.3:7476568-7476587 | MS.gene21471:CDS | 45.0% | |
| CGTGGTTTATTAGAAACGCG+AGG | - | chr5.3:7474011-7474030 | MS.gene21471:CDS | 45.0% | |
| CTTAGCGTAAGTGGGTGTAT+TGG | - | chr5.3:7474119-7474138 | MS.gene21471:intron | 45.0% | |
| GATCGAGATCTCATATAGCG+GGG | + | chr5.3:7474456-7474475 | None:intergenic | 45.0% | |
| GCAAATAGTGCCTACGTATC+CGG | + | chr5.3:7475868-7475887 | None:intergenic | 45.0% | |
| GCGACAGTTTCTTATGCTGT+TGG | + | chr5.3:7476053-7476072 | None:intergenic | 45.0% | |
| GGTCAAGGTAGACATGGAAA+AGG | - | chr5.3:7476223-7476242 | MS.gene21471:intron | 45.0% | |
| GTCAGACAACGATACAACAC+TGG | - | chr5.3:7475183-7475202 | MS.gene21471:CDS | 45.0% | |
| TCTTCAACACACTGTCCACA+CGG | + | chr5.3:7474894-7474913 | None:intergenic | 45.0% | |
| TGACAGTACCTAGAATGCCT+TGG | + | chr5.3:7475600-7475619 | None:intergenic | 45.0% | |
| TGCAGTCGAAGGAAAACGAA+AGG | - | chr5.3:7476323-7476342 | MS.gene21471:intron | 45.0% | |
| TGCTTTGTCAAGTTACCGTG+TGG | - | chr5.3:7474876-7474895 | MS.gene21471:intron | 45.0% | |
| TTGCACTCTGTCCAATCTCA+TGG | + | chr5.3:7473641-7473660 | None:intergenic | 45.0% | |
| ! | AGAGTATTTCGGGAGAGCAA+TGG | + | chr5.3:7476075-7476094 | None:intergenic | 45.0% |
| ! | GAGCCACTTTACCATGAGAT+TGG | - | chr5.3:7473627-7473646 | MS.gene21471:CDS | 45.0% |
| ! | GGCGCTGCAGTTTTTCTTAT+AGG | - | chr5.3:7474403-7474422 | MS.gene21471:CDS | 45.0% |
| !! | CAAGTTGGTCAAGGTAGACA+TGG | - | chr5.3:7476217-7476236 | MS.gene21471:intron | 45.0% |
| !!! | GTGTGCATGTTTTTGGTGAG+AGG | - | chr5.3:7473478-7473497 | MS.gene21471:CDS | 45.0% |
| ACAGCCATGTAGAGCAACCA+CGG | + | chr5.3:7475682-7475701 | None:intergenic | 50.0% | |
| ACGCCTTCAACCTGAAGTGT+CGG | + | chr5.3:7475134-7475153 | None:intergenic | 50.0% | |
| AGGAAGGAGGACATGCAACT+AGG | + | chr5.3:7474178-7474197 | None:intergenic | 50.0% | |
| ATGCATAAGGGTTGCAGCAG+AGG | - | chr5.3:7476003-7476022 | MS.gene21471:intron | 50.0% | |
| CACTGGTGTCTGTGCTTCAT+AGG | - | chr5.3:7475200-7475219 | MS.gene21471:CDS | 50.0% | |
| CGCATATCCTCCATTGCCAT+AGG | - | chr5.3:7474925-7474944 | MS.gene21471:intron | 50.0% | |
| GCAGGGGCAACTTTATGCAA+AGG | - | chr5.3:7474277-7474296 | MS.gene21471:intron | 50.0% | |
| GCTAAGGAGAGTTCCTAGCT+TGG | - | chr5.3:7473500-7473519 | MS.gene21471:CDS | 50.0% | |
| GGAGCTGTTCTTCGCCAATT+CGG | - | chr5.3:7475651-7475670 | MS.gene21471:CDS | 50.0% | |
| GGTAGACATGGAAAAGGCTC+TGG | - | chr5.3:7476229-7476248 | MS.gene21471:intron | 50.0% | |
| GTAGTCTTCCAAGCCAAGCT+AGG | + | chr5.3:7473516-7473535 | None:intergenic | 50.0% | |
| GTCTGATGCGTAGGCACAAT+TGG | - | chr5.3:7475806-7475825 | MS.gene21471:intron | 50.0% | |
| GTTGTGCTTGAGTTCACTGC+TGG | - | chr5.3:7473684-7473703 | MS.gene21471:CDS | 50.0% | |
| TACACCGTGGTTGCTCTACA+TGG | - | chr5.3:7475675-7475694 | MS.gene21471:CDS | 50.0% | |
| TACGCATCAGACTGCAGAGT+GGG | + | chr5.3:7475798-7475817 | None:intergenic | 50.0% | |
| TCAAACACAGCCGGATACGT+AGG | - | chr5.3:7475855-7475874 | MS.gene21471:intron | 50.0% | |
| TCTGCTGCAACCCTTATGCA+TGG | + | chr5.3:7476004-7476023 | None:intergenic | 50.0% | |
| TGTGTGGATAAATTGGCGGG+TGG | + | chr5.3:7474084-7474103 | None:intergenic | 50.0% | |
| TTGGGCTGTCATGACTGTTG+TGG | - | chr5.3:7473662-7473681 | MS.gene21471:CDS | 50.0% | |
| ! | GCTTCGGTATTGAATTGGCC+AGG | - | chr5.3:7475554-7475573 | MS.gene21471:intron | 50.0% |
| ! | TCTCATATAGCGGGGAATCG+AGG | + | chr5.3:7474448-7474467 | None:intergenic | 50.0% |
| ! | TTGAAGGCGTGTATGGCATC+TGG | - | chr5.3:7475144-7475163 | MS.gene21471:CDS | 50.0% |
| !! | AACCTCGAGTTGATGTGTCG+CGG | - | chr5.3:7476548-7476567 | MS.gene21471:CDS | 50.0% |
| !! | CTTCAGGTTGAAGGCGTGTA+TGG | - | chr5.3:7475137-7475156 | MS.gene21471:CDS | 50.0% |
| !! | GCTTGGCTTGGAAGACTACA+TGG | - | chr5.3:7473517-7473536 | MS.gene21471:CDS | 50.0% |
| CAACCACGGTGTAGCCGAAT+TGG | + | chr5.3:7475668-7475687 | None:intergenic | 55.0% | |
| CACTCTGCAGTCTGATGCGT+AGG | - | chr5.3:7475797-7475816 | MS.gene21471:intron | 55.0% | |
| CTACGCATCAGACTGCAGAG+TGG | + | chr5.3:7475799-7475818 | None:intergenic | 55.0% | |
| CTATGTAGCCCCGACACTTC+AGG | - | chr5.3:7475121-7475140 | MS.gene21471:CDS | 55.0% | |
| GGAGAGTTCCTAGCTTGGCT+TGG | - | chr5.3:7473505-7473524 | MS.gene21471:CDS | 55.0% | |
| GGATTGGGGACACTGTTAGC+TGG | - | chr5.3:7474310-7474329 | MS.gene21471:intron | 55.0% | |
| GGCACATCCTATGGCAATGG+AGG | + | chr5.3:7474935-7474954 | None:intergenic | 55.0% | |
| TTCCGCGACACATCAACTCG+AGG | + | chr5.3:7476553-7476572 | None:intergenic | 55.0% | |
| ! | CCAGGCGTTGCATGCAAGTT+GGG | - | chr5.3:7475572-7475591 | MS.gene21471:intron | 55.0% |
| ! | CGCCTTCAACCTGAAGTGTC+GGG | + | chr5.3:7475133-7475152 | None:intergenic | 55.0% |
| ! | GTTGGGAGCCAAGGCATTCT+AGG | - | chr5.3:7475589-7475608 | MS.gene21471:intron | 55.0% |
| ! | TGCATGCAAGTTGGGAGCCA+AGG | - | chr5.3:7475580-7475599 | MS.gene21471:intron | 55.0% |
| !! | GCCTTCAACCTGAAGTGTCG+GGG | + | chr5.3:7475132-7475151 | None:intergenic | 55.0% |
| !! | GCTGCTGCACAAGTTGGTCA+AGG | - | chr5.3:7476208-7476227 | MS.gene21471:intron | 55.0% |
| CCCAACTTGCATGCAACGCC+TGG | + | chr5.3:7475575-7475594 | None:intergenic | 60.0% | |
| GGCGTGTATGGCATCTGGCA+TGG | - | chr5.3:7475149-7475168 | MS.gene21471:CDS | 60.0% | |
| TCGCCAATTCGGCTACACCG+TGG | - | chr5.3:7475662-7475681 | MS.gene21471:CDS | 60.0% | |
| ! | GCCAGGCGTTGCATGCAAGT+TGG | - | chr5.3:7475571-7475590 | MS.gene21471:intron | 60.0% |
| !! | GCCCCGACACTTCAGGTTGA+AGG | - | chr5.3:7475128-7475147 | MS.gene21471:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 7473456 | 7476600 | 7473456 | ID=MS.gene21471 |
| chr5.3 | mRNA | 7473456 | 7476600 | 7473456 | ID=MS.gene21471.t1;Parent=MS.gene21471 |
| chr5.3 | exon | 7476347 | 7476600 | 7476347 | ID=MS.gene21471.t1.exon1;Parent=MS.gene21471.t1 |
| chr5.3 | CDS | 7476347 | 7476600 | 7476347 | ID=cds.MS.gene21471.t1;Parent=MS.gene21471.t1 |
| chr5.3 | exon | 7476072 | 7476115 | 7476072 | ID=MS.gene21471.t1.exon2;Parent=MS.gene21471.t1 |
| chr5.3 | CDS | 7476072 | 7476115 | 7476072 | ID=cds.MS.gene21471.t1;Parent=MS.gene21471.t1 |
| chr5.3 | exon | 7475632 | 7475775 | 7475632 | ID=MS.gene21471.t1.exon3;Parent=MS.gene21471.t1 |
| chr5.3 | CDS | 7475632 | 7475775 | 7475632 | ID=cds.MS.gene21471.t1;Parent=MS.gene21471.t1 |
| chr5.3 | exon | 7474999 | 7475271 | 7474999 | ID=MS.gene21471.t1.exon4;Parent=MS.gene21471.t1 |
| chr5.3 | CDS | 7474999 | 7475271 | 7474999 | ID=cds.MS.gene21471.t1;Parent=MS.gene21471.t1 |
| chr5.3 | exon | 7474572 | 7474693 | 7474572 | ID=MS.gene21471.t1.exon5;Parent=MS.gene21471.t1 |
| chr5.3 | CDS | 7474572 | 7474693 | 7474572 | ID=cds.MS.gene21471.t1;Parent=MS.gene21471.t1 |
| chr5.3 | exon | 7474337 | 7474480 | 7474337 | ID=MS.gene21471.t1.exon6;Parent=MS.gene21471.t1 |
| chr5.3 | CDS | 7474337 | 7474480 | 7474337 | ID=cds.MS.gene21471.t1;Parent=MS.gene21471.t1 |
| chr5.3 | exon | 7473456 | 7474088 | 7473456 | ID=MS.gene21471.t1.exon7;Parent=MS.gene21471.t1 |
| chr5.3 | CDS | 7473456 | 7474088 | 7473456 | ID=cds.MS.gene21471.t1;Parent=MS.gene21471.t1 |
| Gene Sequence |
| Protein sequence |
