Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051654.t1 | XP_013465941.1 | 99.6 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 2.40E-140 | 508.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051654.t1 | Q9M2Y6 | 65.3 | 262 | 79 | 2 | 2 | 252 | 1 | 261 | 5.0e-94 | 345.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051654.t1 | B7FIL1 | 99.6 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 1.7e-140 | 508.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051654 | MS.gene052148 | 0.926269 | 5.91E-91 | -1.69E-46 |
| MS.gene051654 | MS.gene35962 | 0.813893 | 2.03E-51 | -1.69E-46 |
| MS.gene051654 | MS.gene38190 | 0.80486 | 1.76E-49 | -1.69E-46 |
| MS.gene051654 | MS.gene68189 | 0.808711 | 2.71E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051654.t1 | MTR_1g017220 | 99.603 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 0.0 | 519 |
| MS.gene051654.t1 | MTR_2g010540 | 61.154 | 260 | 90 | 1 | 2 | 250 | 1 | 260 | 2.04e-120 | 344 |
| MS.gene051654.t1 | MTR_4g097530 | 60.000 | 260 | 94 | 2 | 2 | 252 | 1 | 259 | 3.73e-112 | 323 |
| MS.gene051654.t1 | MTR_2g010540 | 60.280 | 214 | 74 | 1 | 2 | 204 | 1 | 214 | 4.49e-91 | 268 |
| MS.gene051654.t1 | MTR_3g109730 | 77.953 | 127 | 16 | 4 | 126 | 252 | 11 | 125 | 2.04e-59 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051654.t1 | AT3G49720 | 65.267 | 262 | 79 | 2 | 2 | 252 | 1 | 261 | 1.78e-124 | 354 |
| MS.gene051654.t1 | AT3G49720 | 65.267 | 262 | 79 | 2 | 2 | 252 | 1 | 261 | 1.78e-124 | 354 |
| MS.gene051654.t1 | AT3G49720 | 65.267 | 262 | 79 | 2 | 2 | 252 | 1 | 261 | 1.78e-124 | 354 |
| MS.gene051654.t1 | AT5G65810 | 62.977 | 262 | 82 | 3 | 2 | 252 | 1 | 258 | 3.92e-120 | 343 |
Find 59 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGCAGATGTTTCTAAATT+TGG | 0.163117 | 1.3:+5276974 | MS.gene051654:CDS |
| ATTACAAGAGAGAAAGATTT+TGG | 0.176751 | 1.3:-5276181 | None:intergenic |
| AAGTGGAATATCTGGCATTT+TGG | 0.205441 | 1.3:-5277276 | None:intergenic |
| TGACAAAACTGGAGAAGATT+TGG | 0.264806 | 1.3:-5273938 | None:intergenic |
| CAATAAAACTCTTCCTGATT+TGG | 0.285100 | 1.3:+5276243 | MS.gene051654:CDS |
| GATGGTTTAGTGATATTTAC+TGG | 0.296086 | 1.3:+5276280 | MS.gene051654:CDS |
| TTTCCTTCAAAGTAACTTAG+AGG | 0.301335 | 1.3:+5277197 | MS.gene051654:CDS |
| TTCTCATTGGTTACTTGTAC+AGG | 0.330384 | 1.3:+5274097 | MS.gene051654:CDS |
| AACTGGAGAAGATTTGGATT+TGG | 0.358243 | 1.3:-5273932 | None:intergenic |
| AAATTCTGACCACAATTATA+AGG | 0.359359 | 1.3:-5273966 | None:intergenic |
| CCATATGCTTTCTGTAAAAC+AGG | 0.362663 | 1.3:-5275965 | None:intergenic |
| ACCTTGGCCTTCTGATTAGT+TGG | 0.376653 | 1.3:-5276953 | None:intergenic |
| TCAAGTTTCCTCTTCCATAT+AGG | 0.389012 | 1.3:+5276158 | MS.gene051654:CDS |
| GTGACTTCAAGTGGAATATC+TGG | 0.393548 | 1.3:-5277284 | None:intergenic |
| GCTGATACCCTCACCAAATC+AGG | 0.395423 | 1.3:-5276256 | None:intergenic |
| TCTCCTCTAAGTTACTTTGA+AGG | 0.396518 | 1.3:-5277200 | None:intergenic |
| ATAAGGCCAATTGACAAAAC+TGG | 0.397117 | 1.3:-5273949 | None:intergenic |
| TTTAGAAACATCTGCTACCT+TGG | 0.407306 | 1.3:-5276969 | None:intergenic |
| TGGTTCTATACCCCAGGCTT+CGG | 0.413733 | 1.3:-5276065 | None:intergenic |
| GCCGTTTAGATTCTGTTAGC+AGG | 0.417799 | 1.3:+5274362 | MS.gene051654:CDS |
| GGTTACTTGTACAGGGGCTC+AGG | 0.420689 | 1.3:+5274105 | MS.gene051654:CDS |
| TGTAATTGTTTCAGATACTC+TGG | 0.424438 | 1.3:+5276198 | MS.gene051654:CDS |
| TAGGGAGGCTTGTTTCTCAT+TGG | 0.425163 | 1.3:+5274084 | MS.gene051654:intron |
| CTCATTGGTTACTTGTACAG+GGG | 0.431130 | 1.3:+5274099 | MS.gene051654:CDS |
| AATCTTCTAGAAGAAGTTCC+AGG | 0.440271 | 1.3:-5273901 | None:intergenic |
| AGGAAGATGAAACCGAAGCC+TGG | 0.442655 | 1.3:+5276053 | MS.gene051654:CDS |
| CCCTGCTAACAGAATCTAAA+CGG | 0.453868 | 1.3:-5274363 | None:intergenic |
| GTCAATTGGCCTTATAATTG+TGG | 0.457375 | 1.3:+5273957 | MS.gene051654:CDS |
| TCAGCATCCTCTATATCATA+TGG | 0.464095 | 1.3:-5276085 | None:intergenic |
| GATTCTGTTAGCAGGGTTGA+AGG | 0.466384 | 1.3:+5274370 | MS.gene051654:CDS |
| GGAACTTCTTCTAGAAGATT+CGG | 0.470934 | 1.3:+5273904 | MS.gene051654:CDS |
| TCTCATTGGTTACTTGTACA+GGG | 0.473655 | 1.3:+5274098 | MS.gene051654:CDS |
| GAGACCACATAACAAGTGTC+TGG | 0.486625 | 1.3:-5276019 | None:intergenic |
| TTGTTACATATAGGTGGACT+TGG | 0.494468 | 1.3:+5274337 | MS.gene051654:intron |
| GGAAGATGAAACCGAAGCCT+GGG | 0.497641 | 1.3:+5276054 | MS.gene051654:CDS |
| CTAAGATGAGGAGTGGATCC+TGG | 0.502597 | 1.3:+5277163 | MS.gene051654:CDS |
| TGTGGTCTCTAAATTGCAAA+AGG | 0.503512 | 1.3:+5276033 | MS.gene051654:CDS |
| CGACACGCACATTGCCTCTA+CGG | 0.505900 | 1.3:-5276129 | None:intergenic |
| TATAGAACCATATGATATAG+AGG | 0.516192 | 1.3:+5276078 | MS.gene051654:CDS |
| GTTATGATGTCGAGGAGACC+TGG | 0.526448 | 1.3:+5273883 | None:intergenic |
| ATCATATGGTTCTATACCCC+AGG | 0.528710 | 1.3:-5276071 | None:intergenic |
| ATCAATGGAGTGACTTCAAG+TGG | 0.530196 | 1.3:-5277293 | None:intergenic |
| AACTCTTCCTGATTTGGTGA+GGG | 0.539875 | 1.3:+5276249 | MS.gene051654:CDS |
| CCGTTTAGATTCTGTTAGCA+GGG | 0.545887 | 1.3:+5274363 | MS.gene051654:CDS |
| TTGGTGAGGGTATCAGCTGA+TGG | 0.552785 | 1.3:+5276262 | MS.gene051654:CDS |
| AAACTCTTCCTGATTTGGTG+AGG | 0.567840 | 1.3:+5276248 | MS.gene051654:CDS |
| TTACATATAGGTGGACTTGG+AGG | 0.567958 | 1.3:+5274340 | MS.gene051654:intron |
| TGATTATTTGTGCAGTGGAG+AGG | 0.568020 | 1.3:+5275928 | MS.gene051654:CDS |
| TCCAACTAATCAGAAGGCCA+AGG | 0.581897 | 1.3:+5276952 | MS.gene051654:CDS |
| CTTCAGGCTAAGATGAGGAG+TGG | 0.587352 | 1.3:+5277156 | MS.gene051654:intron |
| TGGTCCAGACACTTGTTATG+TGG | 0.588659 | 1.3:+5276015 | MS.gene051654:CDS |
| TGTTTCTAAATTTGGAAGAG+CGG | 0.593157 | 1.3:+5276982 | MS.gene051654:CDS |
| GTAAAACAGGAATTGCTCGT+TGG | 0.599584 | 1.3:-5275952 | None:intergenic |
| AAAATCAAGTTATGATGTCG+AGG | 0.620491 | 1.3:+5273875 | None:intergenic |
| GCAGGTGATTATTTGTGCAG+TGG | 0.630343 | 1.3:+5275923 | MS.gene051654:intron |
| GATGAGGAGTGGATCCTGGT+GGG | 0.642314 | 1.3:+5277167 | MS.gene051654:CDS |
| AGATGAGGAGTGGATCCTGG+TGG | 0.665807 | 1.3:+5277166 | MS.gene051654:CDS |
| TGCAAAGCACAAATCCGTAG+AGG | 0.674784 | 1.3:+5276115 | MS.gene051654:CDS |
| GAAGATGAAACCGAAGCCTG+GGG | 0.688039 | 1.3:+5276055 | MS.gene051654:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCAATTATTTCTATTT+TGG | + | chr1.3:5274449-5274468 | MS.gene051654:intron | 10.0% |
| !! | ATGTTAATAAAAATGGATAA+GGG | + | chr1.3:5275638-5275657 | MS.gene051654:intron | 15.0% |
| !! | CTGTATTATTACAAAATATA+TGG | - | chr1.3:5275890-5275909 | None:intergenic | 15.0% |
| !! | TAGAAATAATTGAAAATTGA+AGG | - | chr1.3:5274446-5274465 | None:intergenic | 15.0% |
| !! | TGAATTATGAATGAATAATA+AGG | - | chr1.3:5273996-5274015 | None:intergenic | 15.0% |
| !!! | AAACATAGTTTTAACATAAA+TGG | - | chr1.3:5276452-5276471 | None:intergenic | 15.0% |
| !!! | AAGTATGATTAGATATTTTT+TGG | + | chr1.3:5276635-5276654 | MS.gene051654:intron | 15.0% |
| !!! | AATTTTGTTTTTGTAATGTA+GGG | + | chr1.3:5274066-5274085 | MS.gene051654:intron | 15.0% |
| !!! | AGTATGATTAGATATTTTTT+GGG | + | chr1.3:5276636-5276655 | MS.gene051654:intron | 15.0% |
| !!! | ATAATTATGCCATTTTTTAT+TGG | + | chr1.3:5274493-5274512 | MS.gene051654:intron | 15.0% |
| !!! | TAATTTTGTTTTTGTAATGT+AGG | + | chr1.3:5274065-5274084 | MS.gene051654:intron | 15.0% |
| !!! | TATTTTGGTTGTTTTTTATT+TGG | + | chr1.3:5274464-5274483 | MS.gene051654:intron | 15.0% |
| !!! | TCTAATATATTGTTTTTGAT+TGG | + | chr1.3:5274558-5274577 | MS.gene051654:intron | 15.0% |
| !!! | TTTATTTTGGATCAATAATT+GGG | - | chr1.3:5275391-5275410 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTCAAATAACTAT+CGG | + | chr1.3:5274237-5274256 | MS.gene051654:intron | 15.0% |
| !! | AAAAATAAAGTTTACTCAGA+TGG | - | chr1.3:5276333-5276352 | None:intergenic | 20.0% |
| !! | AAAATAAAGTTTACTCAGAT+GGG | - | chr1.3:5276332-5276351 | None:intergenic | 20.0% |
| !! | AACTTGCATTAAGTTTATTA+CGG | + | chr1.3:5276380-5276399 | MS.gene051654:intron | 20.0% |
| !! | GATGTTAATAAAAATGGATA+AGG | + | chr1.3:5275637-5275656 | MS.gene051654:intron | 20.0% |
| !! | TCAAATTGGAAATTCATAAT+GGG | - | chr1.3:5274613-5274632 | None:intergenic | 20.0% |
| !! | TTCAAATTGGAAATTCATAA+TGG | - | chr1.3:5274614-5274633 | None:intergenic | 20.0% |
| !!! | ATTGTACTTGGTAAATTTTA+TGG | + | chr1.3:5275353-5275372 | MS.gene051654:intron | 20.0% |
| !!! | ATTTTGTATATTATGTGAAG+TGG | + | chr1.3:5274299-5274318 | MS.gene051654:intron | 20.0% |
| !!! | CAAACTATGTTTTCAAATAA+CGG | + | chr1.3:5275253-5275272 | MS.gene051654:intron | 20.0% |
| !!! | CTTTATTTTGGATCAATAAT+TGG | - | chr1.3:5275392-5275411 | None:intergenic | 20.0% |
| !!! | CTTTGAGATGTTAATAAAAA+TGG | + | chr1.3:5275631-5275650 | MS.gene051654:intron | 20.0% |
| ! | AAAGACTAAGATCTAGAAAA+TGG | + | chr1.3:5275408-5275427 | MS.gene051654:intron | 25.0% |
| ! | AAATCGTTAAATATTGCGTA+TGG | + | chr1.3:5275474-5275493 | MS.gene051654:intron | 25.0% |
| ! | AAATTCTGACCACAATTATA+AGG | - | chr1.3:5273969-5273988 | None:intergenic | 25.0% |
| ! | AAGACTAAGATCTAGAAAAT+GGG | + | chr1.3:5275409-5275428 | MS.gene051654:intron | 25.0% |
| ! | AAGTTACAGCCAATAAAAAA+TGG | - | chr1.3:5274505-5274524 | None:intergenic | 25.0% |
| ! | AATAAAAATGGATAAGGGTA+GGG | + | chr1.3:5275643-5275662 | MS.gene051654:intron | 25.0% |
| ! | AATTGGAACAGATTTCAAAT+TGG | - | chr1.3:5274627-5274646 | None:intergenic | 25.0% |
| ! | ATAATCATCTCTTCAAATGA+AGG | + | chr1.3:5276926-5276945 | MS.gene051654:intron | 25.0% |
| ! | ATTCTTCACTAAAGAAAACT+TGG | + | chr1.3:5275217-5275236 | MS.gene051654:intron | 25.0% |
| ! | CAAATTGGAAATTCATAATG+GGG | - | chr1.3:5274612-5274631 | None:intergenic | 25.0% |
| ! | TAATAAAAATGGATAAGGGT+AGG | + | chr1.3:5275642-5275661 | MS.gene051654:intron | 25.0% |
| ! | TATAGAACCATATGATATAG+AGG | + | chr1.3:5276078-5276097 | MS.gene051654:CDS | 25.0% |
| ! | TCTGTGATGTCTATATATTT+AGG | + | chr1.3:5275324-5275343 | MS.gene051654:intron | 25.0% |
| ! | TTAATGCAAGTTTCATGTTA+AGG | - | chr1.3:5276372-5276391 | None:intergenic | 25.0% |
| ! | TTAATTATGCTATGGATTCT+AGG | - | chr1.3:5275051-5275070 | None:intergenic | 25.0% |
| ! | TTGAAGCAAGAAAGAATAAA+AGG | - | chr1.3:5274144-5274163 | None:intergenic | 25.0% |
| !! | ATTACAAGAGAGAAAGATTT+TGG | - | chr1.3:5276184-5276203 | None:intergenic | 25.0% |
| !! | TTAGTGAAGAATTCTTTTAC+TGG | - | chr1.3:5275209-5275228 | None:intergenic | 25.0% |
| !! | TTTAGGTTCATTATTGTACT+TGG | + | chr1.3:5275341-5275360 | MS.gene051654:intron | 25.0% |
| !! | TTTTTATATACTGCTGATGT+TGG | + | chr1.3:5276840-5276859 | MS.gene051654:intron | 25.0% |
| !!! | CTAGATCTTAGTCTTTATTT+TGG | - | chr1.3:5275404-5275423 | None:intergenic | 25.0% |
| !!! | TAATTTTTTTCAGCTGAGTT+CGG | + | chr1.3:5276512-5276531 | MS.gene051654:intron | 25.0% |
| !!! | TTTGGTAGTTTTATCAAATG+AGG | - | chr1.3:5275695-5275714 | None:intergenic | 25.0% |
| AAATAAGCATCACTGTAGTT+TGG | - | chr1.3:5274998-5275017 | None:intergenic | 30.0% | |
| AAATATCCTCTGCTTCAAAA+AGG | - | chr1.3:5277075-5277094 | None:intergenic | 30.0% | |
| AAGAGAAAAAATGGAGTGAT+AGG | + | chr1.3:5275156-5275175 | MS.gene051654:intron | 30.0% | |
| AAGTATTATACAACAACCCT+AGG | + | chr1.3:5274824-5274843 | MS.gene051654:intron | 30.0% | |
| AATGAACATAATGAGAGGTT+TGG | + | chr1.3:5275548-5275567 | MS.gene051654:intron | 30.0% | |
| ATATGTCCGTTTCTGATTTA+TGG | - | chr1.3:5275503-5275522 | None:intergenic | 30.0% | |
| ATGTTAATGACAGAGAACAA+AGG | - | chr1.3:5275797-5275816 | None:intergenic | 30.0% | |
| CAATAAAACTCTTCCTGATT+TGG | + | chr1.3:5276243-5276262 | MS.gene051654:CDS | 30.0% | |
| CGATTTCAAAGAATGTATGT+TGG | - | chr1.3:5275460-5275479 | None:intergenic | 30.0% | |
| GAAGTAAATGACATCTCATT+GGG | - | chr1.3:5274721-5274740 | None:intergenic | 30.0% | |
| GAGAAGTCTTAATTATGCTA+TGG | - | chr1.3:5275059-5275078 | None:intergenic | 30.0% | |
| GATGGTTTAGTGATATTTAC+TGG | + | chr1.3:5276280-5276299 | MS.gene051654:CDS | 30.0% | |
| GTTTGCTTCAAGAGAAAAAA+TGG | + | chr1.3:5275147-5275166 | MS.gene051654:intron | 30.0% | |
| TAAAGAAAACTTGGCTAAGA+GGG | + | chr1.3:5275226-5275245 | MS.gene051654:intron | 30.0% | |
| TCACAAATTGTAAGTGACAA+AGG | - | chr1.3:5274878-5274897 | None:intergenic | 30.0% | |
| TGAAGTAAATGACATCTCAT+TGG | - | chr1.3:5274722-5274741 | None:intergenic | 30.0% | |
| TGAGAAATGAACATAATGAG+AGG | + | chr1.3:5275543-5275562 | MS.gene051654:intron | 30.0% | |
| TGGTTACCATAAATCAGAAA+CGG | + | chr1.3:5275494-5275513 | MS.gene051654:intron | 30.0% | |
| TGTAATTGTTTCAGATACTC+TGG | + | chr1.3:5276198-5276217 | MS.gene051654:CDS | 30.0% | |
| TGTTAATGACAGAGAACAAA+GGG | - | chr1.3:5275796-5275815 | None:intergenic | 30.0% | |
| TTGGTTTCTTTCTCTTTGTT+TGG | + | chr1.3:5275567-5275586 | MS.gene051654:intron | 30.0% | |
| TTTCCTTCAAAGTAACTTAG+AGG | + | chr1.3:5277197-5277216 | MS.gene051654:CDS | 30.0% | |
| ! | AGTGATGCTTATTTCTTTCT+GGG | + | chr1.3:5275004-5275023 | MS.gene051654:intron | 30.0% |
| ! | AGTGATTCATAGTTCTTTTG+TGG | + | chr1.3:5274275-5274294 | MS.gene051654:intron | 30.0% |
| ! | ATGCATAAAGTTTTGCATGT+TGG | + | chr1.3:5275995-5276014 | MS.gene051654:CDS | 30.0% |
| ! | GTAGCAGATGTTTCTAAATT+TGG | + | chr1.3:5276974-5276993 | MS.gene051654:CDS | 30.0% |
| ! | TATTTGAAGTAGTGTGTTTG+AGG | + | chr1.3:5276810-5276829 | MS.gene051654:intron | 30.0% |
| ! | TGTTTCTAAATTTGGAAGAG+CGG | + | chr1.3:5276982-5277001 | MS.gene051654:CDS | 30.0% |
| ! | TTTGGATGTTTAAAATCCAC+TGG | + | chr1.3:5275585-5275604 | MS.gene051654:intron | 30.0% |
| !! | AGCTGTGTTTTGTTACATAT+AGG | + | chr1.3:5274328-5274347 | MS.gene051654:intron | 30.0% |
| !! | TGTGTTTTGTTACATATAGG+TGG | + | chr1.3:5274331-5274350 | MS.gene051654:intron | 30.0% |
| !!! | AAGAGTTTTATTGAGGTATC+TGG | - | chr1.3:5276236-5276255 | None:intergenic | 30.0% |
| !!! | AATCAGGAAGAGTTTTATTG+AGG | - | chr1.3:5276243-5276262 | None:intergenic | 30.0% |
| !!! | AGAGTTTTATTGAGGTATCT+GGG | - | chr1.3:5276235-5276254 | None:intergenic | 30.0% |
| !!! | TTTGTTTTTGTAATGTAGGG+AGG | + | chr1.3:5274069-5274088 | MS.gene051654:intron | 30.0% |
| !!! | TTTTTTCTCTTGAAGCAAAC+AGG | - | chr1.3:5275147-5275166 | None:intergenic | 30.0% |
| AACTGGAGAAGATTTGGATT+TGG | - | chr1.3:5273935-5273954 | None:intergenic | 35.0% | |
| AAGTCATTGTGTTGGATGAA+TGG | - | chr1.3:5275758-5275777 | None:intergenic | 35.0% | |
| ACATAAAGACGCAACTAGTT+TGG | - | chr1.3:5275713-5275732 | None:intergenic | 35.0% | |
| AGTTTGAACTAACTGCTAGT+TGG | - | chr1.3:5276581-5276600 | None:intergenic | 35.0% | |
| ATAAGGCCAATTGACAAAAC+TGG | - | chr1.3:5273952-5273971 | None:intergenic | 35.0% | |
| CATCCAACACAATGACTTAT+TGG | + | chr1.3:5275760-5275779 | MS.gene051654:intron | 35.0% | |
| CCAAAAAGTCTTGCATTGTT+TGG | + | chr1.3:5274649-5274668 | MS.gene051654:intron | 35.0% | |
| CCATATGCTTTCTGTAAAAC+AGG | - | chr1.3:5275968-5275987 | None:intergenic | 35.0% | |
| CTAAAGAAAACTTGGCTAAG+AGG | + | chr1.3:5275225-5275244 | MS.gene051654:intron | 35.0% | |
| CTACCAATAAGTCATTGTGT+TGG | - | chr1.3:5275766-5275785 | None:intergenic | 35.0% | |
| CTTCTGCATCAAAGTAATTC+TGG | - | chr1.3:5276477-5276496 | None:intergenic | 35.0% | |
| GCAGTTAGTTCAAACTTCAA+AGG | + | chr1.3:5276585-5276604 | MS.gene051654:intron | 35.0% | |
| TAGACATCACAGACACAAAT+TGG | - | chr1.3:5275317-5275336 | None:intergenic | 35.0% | |
| TAGTTCAAACTTCAAAGGCA+TGG | + | chr1.3:5276590-5276609 | MS.gene051654:intron | 35.0% | |
| TCAAGTTTCCTCTTCCATAT+AGG | + | chr1.3:5276158-5276177 | MS.gene051654:CDS | 35.0% | |
| TCAGCATCCTCTATATCATA+TGG | - | chr1.3:5276088-5276107 | None:intergenic | 35.0% | |
| TGACAAAACTGGAGAAGATT+TGG | - | chr1.3:5273941-5273960 | None:intergenic | 35.0% | |
| TGTGGTCTCTAAATTGCAAA+AGG | + | chr1.3:5276033-5276052 | MS.gene051654:CDS | 35.0% | |
| TGTTTGATACGAGAGAAACT+GGG | + | chr1.3:5275103-5275122 | MS.gene051654:intron | 35.0% | |
| TTACTGGTAAGTGCATTTCA+TGG | + | chr1.3:5276296-5276315 | MS.gene051654:intron | 35.0% | |
| TTGGATGAATGGAGAACAAA+GGG | - | chr1.3:5275747-5275766 | None:intergenic | 35.0% | |
| TTGTTTGATACGAGAGAAAC+TGG | + | chr1.3:5275102-5275121 | MS.gene051654:intron | 35.0% | |
| TTTAGAAACATCTGCTACCT+TGG | - | chr1.3:5276972-5276991 | None:intergenic | 35.0% | |
| ! | AAGTGGAATATCTGGCATTT+TGG | - | chr1.3:5277279-5277298 | None:intergenic | 35.0% |
| ! | AATCTTCTAGAAGAAGTTCC+AGG | - | chr1.3:5273904-5273923 | None:intergenic | 35.0% |
| ! | AGGTTTTCCAACTAATCAGA+AGG | + | chr1.3:5276946-5276965 | MS.gene051654:intron | 35.0% |
| ! | CAGTGATGCTTATTTCTTTC+TGG | + | chr1.3:5275003-5275022 | MS.gene051654:intron | 35.0% |
| ! | CCAAACAATGCAAGACTTTT+TGG | - | chr1.3:5274652-5274671 | None:intergenic | 35.0% |
| ! | GCTGTAACTTGTGTCTTATT+TGG | + | chr1.3:5274515-5274534 | MS.gene051654:intron | 35.0% |
| ! | GGAACTTCTTCTAGAAGATT+CGG | + | chr1.3:5273904-5273923 | MS.gene051654:CDS | 35.0% |
| ! | GTTTAAAATCCACTGGAGTT+GGG | + | chr1.3:5275592-5275611 | MS.gene051654:intron | 35.0% |
| ! | TCACAGACACAAATTGGTTT+AGG | - | chr1.3:5275311-5275330 | None:intergenic | 35.0% |
| ! | TCTCATTGGTTACTTGTACA+GGG | + | chr1.3:5274098-5274117 | MS.gene051654:CDS | 35.0% |
| ! | TCTCCTCTAAGTTACTTTGA+AGG | - | chr1.3:5277203-5277222 | None:intergenic | 35.0% |
| ! | TGTTTAAAATCCACTGGAGT+TGG | + | chr1.3:5275591-5275610 | MS.gene051654:intron | 35.0% |
| ! | TTCTCATTGGTTACTTGTAC+AGG | + | chr1.3:5274097-5274116 | MS.gene051654:CDS | 35.0% |
| ! | TTGTTACATATAGGTGGACT+TGG | + | chr1.3:5274337-5274356 | MS.gene051654:intron | 35.0% |
| ! | TTTAAAATCCACTGGAGTTG+GGG | + | chr1.3:5275593-5275612 | MS.gene051654:intron | 35.0% |
| !! | AACTGATTCCTTTTTGCTTC+AGG | + | chr1.3:5277140-5277159 | MS.gene051654:intron | 35.0% |
| !! | CCTGTTTTACAGAAAGCATA+TGG | + | chr1.3:5275965-5275984 | MS.gene051654:CDS | 35.0% |
| !! | GAGAAAGATTTTGGCCTATA+TGG | - | chr1.3:5276175-5276194 | None:intergenic | 35.0% |
| !! | GTCAATTGGCCTTATAATTG+TGG | + | chr1.3:5273957-5273976 | MS.gene051654:CDS | 35.0% |
| !! | TACAGATAACTTGTTGATGC+AGG | + | chr1.3:5275905-5275924 | MS.gene051654:intron | 35.0% |
| !! | TCTTCTCCAGTTTTGTCAAT+TGG | + | chr1.3:5273943-5273962 | MS.gene051654:CDS | 35.0% |
| !!! | AGTTTTATTGAGGTATCTGG+GGG | - | chr1.3:5276233-5276252 | None:intergenic | 35.0% |
| !!! | GAGTTTTATTGAGGTATCTG+GGG | - | chr1.3:5276234-5276253 | None:intergenic | 35.0% |
| AAATGGATAAGGGTAGGGAT+AGG | + | chr1.3:5275648-5275667 | MS.gene051654:intron | 40.0% | |
| AACCACCTTTGATCCTTAAC+AGG | - | chr1.3:5276671-5276690 | None:intergenic | 40.0% | |
| AAGGTTGAAGGTCTAAATCG+AGG | - | chr1.3:5277056-5277075 | None:intergenic | 40.0% | |
| ACATACAGATACACGACCTA+GGG | - | chr1.3:5274843-5274862 | None:intergenic | 40.0% | |
| AGGTTGAAGGTCTAAATCGA+GGG | - | chr1.3:5277055-5277074 | None:intergenic | 40.0% | |
| AGTGATAGGAAACTTAGCAG+CGG | + | chr1.3:5275170-5275189 | MS.gene051654:intron | 40.0% | |
| CATCTTAGCCTGAAGCAAAA+AGG | - | chr1.3:5277151-5277170 | None:intergenic | 40.0% | |
| CCCTGCTAACAGAATCTAAA+CGG | - | chr1.3:5274366-5274385 | None:intergenic | 40.0% | |
| CCGTTTAGATTCTGTTAGCA+GGG | + | chr1.3:5274363-5274382 | MS.gene051654:CDS | 40.0% | |
| CTCTGCTTCAAAAAGGTTGA+AGG | - | chr1.3:5277068-5277087 | None:intergenic | 40.0% | |
| GATTATCAGATGTCAGTGAC+AGG | - | chr1.3:5276912-5276931 | None:intergenic | 40.0% | |
| GTAAAACAGGAATTGCTCGT+TGG | - | chr1.3:5275955-5275974 | None:intergenic | 40.0% | |
| GTGACTTCAAGTGGAATATC+TGG | - | chr1.3:5277287-5277306 | None:intergenic | 40.0% | |
| GTTGGATGAATGGAGAACAA+AGG | - | chr1.3:5275748-5275767 | None:intergenic | 40.0% | |
| TACAACTTACAACCCCAAGT+GGG | + | chr1.3:5276404-5276423 | MS.gene051654:intron | 40.0% | |
| TACTTCAGACAAAAACGCGA+GGG | + | chr1.3:5274735-5274754 | MS.gene051654:intron | 40.0% | |
| TGAGATTGCTGCATCAAATG+CGG | + | chr1.3:5274928-5274947 | MS.gene051654:intron | 40.0% | |
| TGATTATTTGTGCAGTGGAG+AGG | + | chr1.3:5275928-5275947 | MS.gene051654:CDS | 40.0% | |
| TGGGAAAATTGCACCTGTTA+AGG | + | chr1.3:5276655-5276674 | MS.gene051654:intron | 40.0% | |
| TTAAAATCCACTGGAGTTGG+GGG | + | chr1.3:5275594-5275613 | MS.gene051654:intron | 40.0% | |
| TTACAACTTACAACCCCAAG+TGG | + | chr1.3:5276403-5276422 | MS.gene051654:intron | 40.0% | |
| TTACTTCAGACAAAAACGCG+AGG | + | chr1.3:5274734-5274753 | MS.gene051654:intron | 40.0% | |
| TTGCACCTGTTAAGGATCAA+AGG | + | chr1.3:5276663-5276682 | MS.gene051654:intron | 40.0% | |
| ! | AATTCTTTTACTGGCGAGTG+AGG | - | chr1.3:5275200-5275219 | None:intergenic | 40.0% |
| ! | ATCATATGGTTCTATACCCC+AGG | - | chr1.3:5276074-5276093 | None:intergenic | 40.0% |
| ! | ATCTAGTAGCAGTTAGCTTG+CGG | + | chr1.3:5275852-5275871 | MS.gene051654:intron | 40.0% |
| ! | CCTATAACCTTTTCCCACTT+GGG | - | chr1.3:5276420-5276439 | None:intergenic | 40.0% |
| ! | CTATAACCTTTTCCCACTTG+GGG | - | chr1.3:5276419-5276438 | None:intergenic | 40.0% |
| ! | CTCATTGGGTTTAAGAGTGT+AGG | - | chr1.3:5274707-5274726 | None:intergenic | 40.0% |
| ! | CTCATTGGTTACTTGTACAG+GGG | + | chr1.3:5274099-5274118 | MS.gene051654:CDS | 40.0% |
| ! | TCCTATAACCTTTTCCCACT+TGG | - | chr1.3:5276421-5276440 | None:intergenic | 40.0% |
| ! | TTACATATAGGTGGACTTGG+AGG | + | chr1.3:5274340-5274359 | MS.gene051654:intron | 40.0% |
| ! | TTTTGCTTCAGGCTAAGATG+AGG | + | chr1.3:5277151-5277170 | MS.gene051654:intron | 40.0% |
| !! | AAACTCTTCCTGATTTGGTG+AGG | + | chr1.3:5276248-5276267 | MS.gene051654:CDS | 40.0% |
| !! | AACTCTTCCTGATTTGGTGA+GGG | + | chr1.3:5276249-5276268 | MS.gene051654:CDS | 40.0% |
| !! | GATTTTGGCCTATATGGAAG+AGG | - | chr1.3:5276169-5276188 | None:intergenic | 40.0% |
| !! | TGCAAGACTTTTTGGCGAAT+TGG | - | chr1.3:5274644-5274663 | None:intergenic | 40.0% |
| !!! | CTTCAACCTTTTTGAAGCAG+AGG | + | chr1.3:5277066-5277085 | MS.gene051654:intron | 40.0% |
| AAATTTGGAAGAGCGGTGAG+TGG | + | chr1.3:5276989-5277008 | MS.gene051654:intron | 45.0% | |
| AAGGAAAAACTTGACCCACC+AGG | - | chr1.3:5277184-5277203 | None:intergenic | 45.0% | |
| AGGCAGCACTAAGCATCAAA+TGG | - | chr1.3:5275031-5275050 | None:intergenic | 45.0% | |
| ATCTCGACAATGCGGTGTAA+TGG | + | chr1.3:5274785-5274804 | MS.gene051654:intron | 45.0% | |
| CACATACAGATACACGACCT+AGG | - | chr1.3:5274844-5274863 | None:intergenic | 45.0% | |
| CACCTGTTAAGGATCAAAGG+TGG | + | chr1.3:5276666-5276685 | MS.gene051654:intron | 45.0% | |
| CCCAAGTGGGAAAAGGTTAT+AGG | + | chr1.3:5276417-5276436 | MS.gene051654:intron | 45.0% | |
| CGGACAATATCTCGACAATG+CGG | + | chr1.3:5274777-5274796 | MS.gene051654:intron | 45.0% | |
| CTTGCATTGTTTGGCAATCG+AGG | + | chr1.3:5274658-5274677 | MS.gene051654:intron | 45.0% | |
| GAGACCACATAACAAGTGTC+TGG | - | chr1.3:5276022-5276041 | None:intergenic | 45.0% | |
| GAGAGAAACTGGGAGGAATT+TGG | + | chr1.3:5275113-5275132 | MS.gene051654:intron | 45.0% | |
| GATTCTGTTAGCAGGGTTGA+AGG | + | chr1.3:5274370-5274389 | MS.gene051654:CDS | 45.0% | |
| GCAGGTGATTATTTGTGCAG+TGG | + | chr1.3:5275923-5275942 | MS.gene051654:intron | 45.0% | |
| GCCGTTTAGATTCTGTTAGC+AGG | + | chr1.3:5274362-5274381 | MS.gene051654:CDS | 45.0% | |
| GTCGAGATATTGTCCGCTTT+GGG | - | chr1.3:5274773-5274792 | None:intergenic | 45.0% | |
| TAAGGGTAGGGATAGGATGT+AGG | + | chr1.3:5275655-5275674 | MS.gene051654:intron | 45.0% | |
| TCCAACTAATCAGAAGGCCA+AGG | + | chr1.3:5276952-5276971 | MS.gene051654:CDS | 45.0% | |
| TGCAAAGCACAAATCCGTAG+AGG | + | chr1.3:5276115-5276134 | MS.gene051654:CDS | 45.0% | |
| TGTCGAGATATTGTCCGCTT+TGG | - | chr1.3:5274774-5274793 | None:intergenic | 45.0% | |
| TTACAACCCCAAGTGGGAAA+AGG | + | chr1.3:5276410-5276429 | MS.gene051654:intron | 45.0% | |
| TTGATACGAGAGAAACTGGG+AGG | + | chr1.3:5275106-5275125 | MS.gene051654:intron | 45.0% | |
| ! | ACCTTGGCCTTCTGATTAGT+TGG | - | chr1.3:5276956-5276975 | None:intergenic | 45.0% |
| ! | TAGGGAGGCTTGTTTCTCAT+TGG | + | chr1.3:5274084-5274103 | MS.gene051654:intron | 45.0% |
| ! | TATTGAGGTATCTGGGGGAA+AGG | - | chr1.3:5276228-5276247 | None:intergenic | 45.0% |
| !! | AGTTAGCTTGCGGTTCAAGT+AGG | + | chr1.3:5275862-5275881 | MS.gene051654:intron | 45.0% |
| !! | CGGTGTAATGGACTTGAGAT+CGG | + | chr1.3:5274797-5274816 | MS.gene051654:intron | 45.0% |
| !! | CTTTGATGCAGAAGCACTAG+AGG | + | chr1.3:5276483-5276502 | MS.gene051654:intron | 45.0% |
| !! | TGGTCCAGACACTTGTTATG+TGG | + | chr1.3:5276015-5276034 | MS.gene051654:CDS | 45.0% |
| AGGAAGATGAAACCGAAGCC+TGG | + | chr1.3:5276053-5276072 | MS.gene051654:CDS | 50.0% | |
| CTAAGATGAGGAGTGGATCC+TGG | + | chr1.3:5277163-5277182 | MS.gene051654:CDS | 50.0% | |
| CTTCAGGCTAAGATGAGGAG+TGG | + | chr1.3:5277156-5277175 | MS.gene051654:intron | 50.0% | |
| GAAGATGAAACCGAAGCCTG+GGG | + | chr1.3:5276055-5276074 | MS.gene051654:CDS | 50.0% | |
| GCATCAAATGCGGTGCTTTG+TGG | + | chr1.3:5274938-5274957 | MS.gene051654:intron | 50.0% | |
| GCTGATACCCTCACCAAATC+AGG | - | chr1.3:5276259-5276278 | None:intergenic | 50.0% | |
| GGAAGATGAAACCGAAGCCT+GGG | + | chr1.3:5276054-5276073 | MS.gene051654:CDS | 50.0% | |
| ! | TGGTTCTATACCCCAGGCTT+CGG | - | chr1.3:5276068-5276087 | None:intergenic | 50.0% |
| !! | TTGGTGAGGGTATCAGCTGA+TGG | + | chr1.3:5276262-5276281 | MS.gene051654:CDS | 50.0% |
| AAACGCGAGGGCTCACACAA+AGG | + | chr1.3:5274747-5274766 | MS.gene051654:intron | 55.0% | |
| AAATCCACTGGAGTTGGGGG+TGG | + | chr1.3:5275597-5275616 | MS.gene051654:intron | 55.0% | |
| AGATGAGGAGTGGATCCTGG+TGG | + | chr1.3:5277166-5277185 | MS.gene051654:CDS | 55.0% | |
| CGACACGCACATTGCCTCTA+CGG | - | chr1.3:5276132-5276151 | None:intergenic | 55.0% | |
| GATGAGGAGTGGATCCTGGT+GGG | + | chr1.3:5277167-5277186 | MS.gene051654:CDS | 55.0% | |
| GCTCACACAAAGGCCCAAAG+CGG | + | chr1.3:5274757-5274776 | MS.gene051654:intron | 55.0% | |
| GGTTACTTGTACAGGGGCTC+AGG | + | chr1.3:5274105-5274124 | MS.gene051654:CDS | 55.0% | |
| CACTGGAGTTGGGGGTGGAA+GGG | + | chr1.3:5275602-5275621 | MS.gene051654:intron | 60.0% | |
| CCACTGGAGTTGGGGGTGGA+AGG | + | chr1.3:5275601-5275620 | MS.gene051654:intron | 65.0% | |
| CCTTCCACCCCCAACTCCAG+TGG | - | chr1.3:5275604-5275623 | None:intergenic | 65.0% | |
| TGGAGTTGGGGGTGGAAGGG+AGG | + | chr1.3:5275605-5275624 | MS.gene051654:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 5273886 | 5277314 | 5273886 | ID=MS.gene051654 |
| chr1.3 | mRNA | 5273886 | 5277314 | 5273886 | ID=MS.gene051654.t1;Parent=MS.gene051654 |
| chr1.3 | exon | 5273886 | 5273978 | 5273886 | ID=MS.gene051654.t1.exon1;Parent=MS.gene051654.t1 |
| chr1.3 | CDS | 5273886 | 5273978 | 5273886 | ID=cds.MS.gene051654.t1;Parent=MS.gene051654.t1 |
| chr1.3 | exon | 5274087 | 5274126 | 5274087 | ID=MS.gene051654.t1.exon2;Parent=MS.gene051654.t1 |
| chr1.3 | CDS | 5274087 | 5274126 | 5274087 | ID=cds.MS.gene051654.t1;Parent=MS.gene051654.t1 |
| chr1.3 | exon | 5274350 | 5274391 | 5274350 | ID=MS.gene051654.t1.exon3;Parent=MS.gene051654.t1 |
| chr1.3 | CDS | 5274350 | 5274391 | 5274350 | ID=cds.MS.gene051654.t1;Parent=MS.gene051654.t1 |
| chr1.3 | exon | 5275927 | 5276301 | 5275927 | ID=MS.gene051654.t1.exon4;Parent=MS.gene051654.t1 |
| chr1.3 | CDS | 5275927 | 5276301 | 5275927 | ID=cds.MS.gene051654.t1;Parent=MS.gene051654.t1 |
| chr1.3 | exon | 5276948 | 5277003 | 5276948 | ID=MS.gene051654.t1.exon5;Parent=MS.gene051654.t1 |
| chr1.3 | CDS | 5276948 | 5277003 | 5276948 | ID=cds.MS.gene051654.t1;Parent=MS.gene051654.t1 |
| chr1.3 | exon | 5277162 | 5277314 | 5277162 | ID=MS.gene051654.t1.exon6;Parent=MS.gene051654.t1 |
| chr1.3 | CDS | 5277162 | 5277314 | 5277162 | ID=cds.MS.gene051654.t1;Parent=MS.gene051654.t1 |
| Gene Sequence |
| Protein sequence |
