Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051794.t1 | XP_013458437.1 | 99.4 | 343 | 2 | 0 | 54 | 396 | 166 | 508 | 2.90E-193 | 684.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051794.t1 | Q9S7B5 | 85.5 | 338 | 48 | 1 | 54 | 390 | 182 | 519 | 1.8e-167 | 590.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051794.t1 | A0A072UTS3 | 99.4 | 343 | 2 | 0 | 54 | 396 | 166 | 508 | 2.1e-193 | 684.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051794 | MS.gene051825 | 0.826347 | 2.85E-54 | -1.69E-46 |
| MS.gene051794 | MS.gene051827 | 0.935669 | 5.89E-97 | -1.69E-46 |
| MS.gene051794 | MS.gene24844 | 0.972696 | 3.44E-135 | -1.69E-46 |
| MS.gene051794 | MS.gene55758 | -0.804675 | 1.93E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051794.t1 | MTR_4g125700 | 99.417 | 343 | 2 | 0 | 54 | 396 | 166 | 508 | 0.0 | 706 |
| MS.gene051794.t1 | MTR_2g099510 | 84.593 | 344 | 52 | 1 | 54 | 396 | 187 | 530 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051794.t1 | AT4G29840 | 85.503 | 338 | 48 | 1 | 54 | 390 | 182 | 519 | 0.0 | 610 |
| MS.gene051794.t1 | AT1G72810 | 83.871 | 341 | 53 | 2 | 54 | 392 | 173 | 513 | 0.0 | 598 |
Find 99 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAATGTGTAAAGATTT+AGG | 0.134689 | 8.2:-7111935 | MS.gene051794:CDS |
| TTCTGAATTACCGATATATT+TGG | 0.191664 | 8.2:-7112098 | MS.gene051794:CDS |
| AGTAAGATTGATTATCATTC+TGG | 0.199505 | 8.2:-7111533 | MS.gene051794:CDS |
| CTCAGGAATAATGGGGTTAT+TGG | 0.245982 | 8.2:-7111611 | MS.gene051794:CDS |
| ATTGTACCTGGTGGAAATTT+AGG | 0.246107 | 8.2:-7111983 | MS.gene051794:CDS |
| ATATCATCAGGGTGGATTTC+TGG | 0.247855 | 8.2:+7112508 | None:intergenic |
| TTGATTAAACTCAGGAATAA+TGG | 0.260884 | 8.2:-7111620 | MS.gene051794:CDS |
| GTGTCTGTTAAGGCTGATTT+TGG | 0.270510 | 8.2:-7111473 | MS.gene051794:CDS |
| TCAAAATGTGTAAAGATTTA+GGG | 0.279636 | 8.2:-7111934 | MS.gene051794:CDS |
| ATGGTTGTATGAAGCTGATT+AGG | 0.316364 | 8.2:-7112129 | MS.gene051794:CDS |
| ACCACTTGGCCTTACGGTTC+AGG | 0.317729 | 8.2:-7112559 | MS.gene051794:CDS |
| TTGTAGGCATGAACGATCTT+TGG | 0.318466 | 8.2:-7112426 | MS.gene051794:CDS |
| TGATTAAACTCAGGAATAAT+GGG | 0.322866 | 8.2:-7111619 | MS.gene051794:CDS |
| GGCCTTACGGTTCAGGTGTA+TGG | 0.326197 | 8.2:-7112552 | MS.gene051794:CDS |
| TTGTACCTGGTGGAAATTTA+GGG | 0.337501 | 8.2:-7111982 | MS.gene051794:CDS |
| TTCAATTCGTAAACTATTCA+AGG | 0.352361 | 8.2:+7112069 | None:intergenic |
| CACTGTGGTAATAGCCATAC+TGG | 0.361097 | 8.2:-7112397 | MS.gene051794:CDS |
| TCTGGGAATATTGTTGGTAT+TGG | 0.386215 | 8.2:-7111515 | MS.gene051794:CDS |
| GATCTTTGAAGCTTCCAGTA+TGG | 0.386403 | 8.2:+7112383 | None:intergenic |
| CGAAGTTCGACGGCGCGTAC+TGG | 0.391694 | 8.2:-7112612 | MS.gene051794:CDS |
| ACTGGAAGCTTCAAAGATCT+TGG | 0.393842 | 8.2:-7112379 | MS.gene051794:CDS |
| TGTAGGCATGAACGATCTTT+GGG | 0.399165 | 8.2:-7112425 | MS.gene051794:CDS |
| TTGTATTTGTATTATAAGAA+TGG | 0.406563 | 8.2:-7111857 | MS.gene051794:CDS |
| TCTGCTTATTGCGCTTCAGC+TGG | 0.409965 | 8.2:-7112256 | MS.gene051794:CDS |
| ATGTTTATTTGTCCTCATAC+TGG | 0.412669 | 8.2:-7111659 | MS.gene051794:CDS |
| ATCCATCAATTCCTCTTCAC+TGG | 0.414822 | 8.2:+7111709 | None:intergenic |
| TATCATTCTGGGAATATTGT+TGG | 0.416039 | 8.2:-7111521 | MS.gene051794:CDS |
| TTGAATAGTTTACGAATTGA+AGG | 0.416111 | 8.2:-7112067 | MS.gene051794:CDS |
| ATGGCACTTGCTGATTCAAC+TGG | 0.418295 | 8.2:-7111683 | MS.gene051794:CDS |
| TTTGCTTCTGCTATTCAGAT+TGG | 0.423112 | 8.2:-7111797 | MS.gene051794:CDS |
| AGCCAGTGAAGAGGAATTGA+TGG | 0.425665 | 8.2:-7111711 | MS.gene051794:CDS |
| AAGGAATTCGCCAAATATAT+CGG | 0.426752 | 8.2:+7112088 | None:intergenic |
| AATGACTGTGCTTGTTAGTC+AGG | 0.431806 | 8.2:-7112356 | MS.gene051794:CDS |
| GGGAAAACCACTTGGCCTTA+CGG | 0.436987 | 8.2:-7112565 | MS.gene051794:CDS |
| TTCAGGTGTATGGAGCAAAA+AGG | 0.437179 | 8.2:-7112542 | MS.gene051794:CDS |
| AAAGCGCTAACGATATCATC+AGG | 0.438146 | 8.2:+7112496 | None:intergenic |
| TTTGCAGCAGTTTGATTGGC+AGG | 0.441607 | 8.2:-7112020 | MS.gene051794:CDS |
| TGGTTGTATGAAGCTGATTA+GGG | 0.444344 | 8.2:-7112128 | MS.gene051794:CDS |
| TAATCCACCTGTGTCTGTTA+AGG | 0.451369 | 8.2:-7111483 | MS.gene051794:CDS |
| ACAGCTCTATCAATTGAAAC+AGG | 0.468555 | 8.2:+7111770 | None:intergenic |
| GTAAGATTGATTATCATTCT+GGG | 0.468628 | 8.2:-7111532 | MS.gene051794:CDS |
| ATTTGTATTATAAGAATGGT+TGG | 0.468821 | 8.2:-7111853 | MS.gene051794:CDS |
| AACCTCTTCGACTCGCGTGT+GGG | 0.484266 | 8.2:-7112586 | MS.gene051794:CDS |
| CCAGGTACAATCACCCAATC+AGG | 0.486304 | 8.2:+7111995 | None:intergenic |
| GGAGTTGGTTGTGCTTCCAC+CGG | 0.488070 | 8.2:-7112298 | MS.gene051794:CDS |
| AACCGTCCGTTGGTCGGAGT+TGG | 0.488563 | 8.2:-7112313 | MS.gene051794:CDS |
| TTGATTGGCAGGTACCTGAT+TGG | 0.489621 | 8.2:-7112009 | MS.gene051794:CDS |
| CGCGTGTGGGGAAAACCACT+TGG | 0.493520 | 8.2:-7112573 | MS.gene051794:CDS |
| CCTGATTGGGTGATTGTACC+TGG | 0.494816 | 8.2:-7111995 | MS.gene051794:CDS |
| TGATTGGCAGGTACCTGATT+GGG | 0.499461 | 8.2:-7112008 | MS.gene051794:CDS |
| TGGAGCCAGTGAGAGGGTTG+TGG | 0.505753 | 8.2:-7111591 | MS.gene051794:CDS |
| CAACCTCTTCGACTCGCGTG+TGG | 0.509904 | 8.2:-7112587 | MS.gene051794:CDS |
| TTGATTCAACCGGTATCAAA+TGG | 0.513680 | 8.2:-7112184 | MS.gene051794:CDS |
| GTGGTTGTTAGTACTGCTCA+TGG | 0.517105 | 8.2:-7111572 | MS.gene051794:CDS |
| ACCAATGCACCATTTGATAC+CGG | 0.522774 | 8.2:+7112175 | None:intergenic |
| TCGCGAGTGCTTCGATGTCA+TGG | 0.529208 | 8.2:+7112632 | None:intergenic |
| AACCGCGCAGTTGATTCAAC+CGG | 0.530203 | 8.2:-7112194 | MS.gene051794:CDS |
| GTTAAAGCCACACCAGTATG+AGG | 0.530207 | 8.2:+7111647 | None:intergenic |
| ACCGGTATCAAATGGTGCAT+TGG | 0.530776 | 8.2:-7112176 | MS.gene051794:CDS |
| TGTTGATAAGATACCAAGGC+TGG | 0.532452 | 8.2:-7111909 | MS.gene051794:CDS |
| TAACTGCTTTGATTAAACTC+AGG | 0.539179 | 8.2:-7111628 | MS.gene051794:CDS |
| AACAACCACAACCCTCTCAC+TGG | 0.543564 | 8.2:+7111586 | None:intergenic |
| ACCTCTTCGACTCGCGTGTG+GGG | 0.547841 | 8.2:-7112585 | MS.gene051794:CDS |
| GCTTGTGCACAAACCAGCCT+TGG | 0.551031 | 8.2:+7111896 | None:intergenic |
| TGCTTCCACCGGTGATACAT+CGG | 0.553305 | 8.2:-7112287 | MS.gene051794:CDS |
| TTAGTCAGGTAAATCGCCTC+CGG | 0.556393 | 8.2:-7112342 | MS.gene051794:CDS |
| TATGCATTGAAGAATTCTGA+TGG | 0.567257 | 8.2:-7111746 | MS.gene051794:CDS |
| CAGCGCAGCCGATGTATCAC+CGG | 0.572600 | 8.2:+7112279 | None:intergenic |
| TCCCCACACGCGAGTCGAAG+AGG | 0.573166 | 8.2:+7112584 | None:intergenic |
| ATGCATTGAAGAATTCTGAT+GGG | 0.574216 | 8.2:-7111745 | MS.gene051794:CDS |
| TATTTGTCCTCATACTGGTG+TGG | 0.574702 | 8.2:-7111654 | MS.gene051794:CDS |
| GAAGCACTCGCGAAGTTCGA+CGG | 0.577029 | 8.2:-7112622 | MS.gene051794:CDS |
| GGGTTATTGGAGCCAGTGAG+AGG | 0.577743 | 8.2:-7111598 | MS.gene051794:CDS |
| GATTAAACTCAGGAATAATG+GGG | 0.580133 | 8.2:-7111618 | MS.gene051794:CDS |
| CCTTGGACTACAAACTACTT+CGG | 0.589244 | 8.2:+7111407 | None:intergenic |
| AAAATGAACCGTCCGTTGGT+CGG | 0.591612 | 8.2:-7112319 | MS.gene051794:CDS |
| TTCTTATAATACAAATACAA+AGG | 0.596623 | 8.2:+7111860 | None:intergenic |
| CTCCATACACCTGAACCGTA+AGG | 0.596883 | 8.2:+7112550 | None:intergenic |
| GCACAACCAACTCCGACCAA+CGG | 0.599617 | 8.2:+7112307 | None:intergenic |
| CGCAGCCGATGTATCACCGG+TGG | 0.601314 | 8.2:+7112282 | None:intergenic |
| TGTTGAGGAAGCCAGTGAAG+AGG | 0.612541 | 8.2:-7111720 | MS.gene051794:CDS |
| CCGGAAAATGAACCGTCCGT+TGG | 0.613505 | 8.2:-7112323 | MS.gene051794:CDS |
| AACCAACTCCGACCAACGGA+CGG | 0.618009 | 8.2:+7112311 | None:intergenic |
| GAATTCTGATGGGATTGTTG+AGG | 0.621403 | 8.2:-7111735 | MS.gene051794:CDS |
| AAATCAGCCTTAACAGACAC+AGG | 0.623027 | 8.2:+7111476 | None:intergenic |
| CATCAGGGTGGATTTCTGGT+AGG | 0.634205 | 8.2:+7112512 | None:intergenic |
| GGTTATTGGAGCCAGTGAGA+GGG | 0.634474 | 8.2:-7111597 | MS.gene051794:CDS |
| ACCTGAACCGTAAGGCCAAG+TGG | 0.644246 | 8.2:+7112558 | None:intergenic |
| AGAGTTTAAAGCGATTAAAG+CGG | 0.650024 | 8.2:-7111828 | MS.gene051794:CDS |
| CGCTAACGATATCATCAGGG+TGG | 0.654724 | 8.2:+7112500 | None:intergenic |
| ATATTCCCTAAATTTCCACC+AGG | 0.655231 | 8.2:+7111977 | None:intergenic |
| AGAGGAATTGATGGATGCAA+TGG | 0.657723 | 8.2:-7111702 | MS.gene051794:CDS |
| GGCTTGTTGATAAGATACCA+AGG | 0.657922 | 8.2:-7111913 | MS.gene051794:CDS |
| GCTGGTAGGAAAACAATCGA+AGG | 0.673402 | 8.2:+7112229 | None:intergenic |
| AAGCGCTAACGATATCATCA+GGG | 0.689325 | 8.2:+7112497 | None:intergenic |
| TCAGCCTTAACAGACACAGG+TGG | 0.717631 | 8.2:+7111479 | None:intergenic |
| GATCTTTGGGTTAAACACTG+TGG | 0.724956 | 8.2:-7112412 | MS.gene051794:CDS |
| TACCGGTTGAATCAACTGCG+CGG | 0.770329 | 8.2:+7112192 | None:intergenic |
| GATTGGGTGATTGTACCTGG+TGG | 0.786775 | 8.2:-7111992 | MS.gene051794:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTATAATACAAATACAA+AGG | + | chr8.2:7112194-7112213 | None:intergenic | 15.0% |
| !! | TTGTATTTGTATTATAAGAA+TGG | - | chr8.2:7112194-7112213 | MS.gene051794:CDS | 15.0% |
| !!! | AATATTTATGCATTTTACAA+AGG | - | chr8.2:7112092-7112111 | MS.gene051794:CDS | 15.0% |
| !! | ATTTGTATTATAAGAATGGT+TGG | - | chr8.2:7112198-7112217 | MS.gene051794:CDS | 20.0% |
| !! | TCAAAATGTGTAAAGATTTA+GGG | - | chr8.2:7112117-7112136 | MS.gene051794:CDS | 20.0% |
| !! | TTCAAAATGTGTAAAGATTT+AGG | - | chr8.2:7112116-7112135 | MS.gene051794:CDS | 20.0% |
| ! | AGTAAGATTGATTATCATTC+TGG | - | chr8.2:7112518-7112537 | MS.gene051794:CDS | 25.0% |
| ! | GTAAGATTGATTATCATTCT+GGG | - | chr8.2:7112519-7112538 | MS.gene051794:CDS | 25.0% |
| ! | TGATTAAACTCAGGAATAAT+GGG | - | chr8.2:7112432-7112451 | MS.gene051794:intron | 25.0% |
| ! | TTCAATTCGTAAACTATTCA+AGG | + | chr8.2:7111985-7112004 | None:intergenic | 25.0% |
| ! | TTCTGAATTACCGATATATT+TGG | - | chr8.2:7111953-7111972 | MS.gene051794:CDS | 25.0% |
| ! | TTGAATAGTTTACGAATTGA+AGG | - | chr8.2:7111984-7112003 | MS.gene051794:CDS | 25.0% |
| ! | TTGATTAAACTCAGGAATAA+TGG | - | chr8.2:7112431-7112450 | MS.gene051794:intron | 25.0% |
| !!! | AGTATTGATACTGATTTTGA+TGG | - | chr8.2:7111903-7111922 | MS.gene051794:CDS | 25.0% |
| AAGGAATTCGCCAAATATAT+CGG | + | chr8.2:7111966-7111985 | None:intergenic | 30.0% | |
| ATGCATTGAAGAATTCTGAT+GGG | - | chr8.2:7112306-7112325 | MS.gene051794:CDS | 30.0% | |
| ATGTTTATTTGTCCTCATAC+TGG | - | chr8.2:7112392-7112411 | MS.gene051794:CDS | 30.0% | |
| GATTAAACTCAGGAATAATG+GGG | - | chr8.2:7112433-7112452 | MS.gene051794:intron | 30.0% | |
| TAACTGCTTTGATTAAACTC+AGG | - | chr8.2:7112423-7112442 | MS.gene051794:CDS | 30.0% | |
| TATGCATTGAAGAATTCTGA+TGG | - | chr8.2:7112305-7112324 | MS.gene051794:CDS | 30.0% | |
| ! | AAGGTAACTCTAATCTTTTC+TGG | - | chr8.2:7111580-7111599 | MS.gene051794:CDS | 30.0% |
| ! | AGAGTTTAAAGCGATTAAAG+CGG | - | chr8.2:7112223-7112242 | MS.gene051794:CDS | 30.0% |
| ! | AGGTAACTCTAATCTTTTCT+GGG | - | chr8.2:7111581-7111600 | MS.gene051794:CDS | 30.0% |
| ! | TATCATTCTGGGAATATTGT+TGG | - | chr8.2:7112530-7112549 | MS.gene051794:CDS | 30.0% |
| ACAGCTCTATCAATTGAAAC+AGG | + | chr8.2:7112284-7112303 | None:intergenic | 35.0% | |
| ATATTCCCTAAATTTCCACC+AGG | + | chr8.2:7112077-7112096 | None:intergenic | 35.0% | |
| ATGGTTGTATGAAGCTGATT+AGG | - | chr8.2:7111922-7111941 | MS.gene051794:CDS | 35.0% | |
| ATTGTACCTGGTGGAAATTT+AGG | - | chr8.2:7112068-7112087 | MS.gene051794:CDS | 35.0% | |
| TCTGGGAATATTGTTGGTAT+TGG | - | chr8.2:7112536-7112555 | MS.gene051794:CDS | 35.0% | |
| TGGTTGTATGAAGCTGATTA+GGG | - | chr8.2:7111923-7111942 | MS.gene051794:CDS | 35.0% | |
| TGTATGGAGCAAAAAGGAAT+GGG | - | chr8.2:7111515-7111534 | MS.gene051794:CDS | 35.0% | |
| TTGATTCAACCGGTATCAAA+TGG | - | chr8.2:7111867-7111886 | MS.gene051794:CDS | 35.0% | |
| TTGTACCTGGTGGAAATTTA+GGG | - | chr8.2:7112069-7112088 | MS.gene051794:CDS | 35.0% | |
| TTTGCTTCTGCTATTCAGAT+TGG | - | chr8.2:7112254-7112273 | MS.gene051794:CDS | 35.0% | |
| ! | AGATTTTGCAGCAGTTTGAT+TGG | - | chr8.2:7112027-7112046 | MS.gene051794:CDS | 35.0% |
| ! | TTGAGATTTTATTCGCTGGT+AGG | + | chr8.2:7111839-7111858 | None:intergenic | 35.0% |
| AAATCAGCCTTAACAGACAC+AGG | + | chr8.2:7112578-7112597 | None:intergenic | 40.0% | |
| AAGCGCTAACGATATCATCA+GGG | + | chr8.2:7111557-7111576 | None:intergenic | 40.0% | |
| ACCAATGCACCATTTGATAC+CGG | + | chr8.2:7111879-7111898 | None:intergenic | 40.0% | |
| ACTGGAAGCTTCAAAGATCT+TGG | - | chr8.2:7111672-7111691 | MS.gene051794:CDS | 40.0% | |
| ATCCATCAATTCCTCTTCAC+TGG | + | chr8.2:7112345-7112364 | None:intergenic | 40.0% | |
| GAATTCTGATGGGATTGTTG+AGG | - | chr8.2:7112316-7112335 | MS.gene051794:CDS | 40.0% | |
| GTGTATGGAGCAAAAAGGAA+TGG | - | chr8.2:7111514-7111533 | MS.gene051794:CDS | 40.0% | |
| TAATCCACCTGTGTCTGTTA+AGG | - | chr8.2:7112568-7112587 | MS.gene051794:CDS | 40.0% | |
| TATTTGTCCTCATACTGGTG+TGG | - | chr8.2:7112397-7112416 | MS.gene051794:CDS | 40.0% | |
| TGTAGGCATGAACGATCTTT+GGG | - | chr8.2:7111626-7111645 | MS.gene051794:CDS | 40.0% | |
| TTCAGGTGTATGGAGCAAAA+AGG | - | chr8.2:7111509-7111528 | MS.gene051794:CDS | 40.0% | |
| TTGTAGGCATGAACGATCTT+TGG | - | chr8.2:7111625-7111644 | MS.gene051794:CDS | 40.0% | |
| ! | AAAGCGCTAACGATATCATC+AGG | + | chr8.2:7111558-7111577 | None:intergenic | 40.0% |
| ! | AATGACTGTGCTTGTTAGTC+AGG | - | chr8.2:7111695-7111714 | MS.gene051794:CDS | 40.0% |
| ! | AGAGGAATTGATGGATGCAA+TGG | - | chr8.2:7112349-7112368 | MS.gene051794:CDS | 40.0% |
| ! | ATATCATCAGGGTGGATTTC+TGG | + | chr8.2:7111546-7111565 | None:intergenic | 40.0% |
| ! | CTCAGGAATAATGGGGTTAT+TGG | - | chr8.2:7112440-7112459 | MS.gene051794:intron | 40.0% |
| ! | GATATCGTTAGCGCTTTTGA+AGG | - | chr8.2:7111561-7111580 | MS.gene051794:CDS | 40.0% |
| ! | GATCTTTGGGTTAAACACTG+TGG | - | chr8.2:7111639-7111658 | MS.gene051794:CDS | 40.0% |
| ! | TGTTGATAAGATACCAAGGC+TGG | - | chr8.2:7112142-7112161 | MS.gene051794:CDS | 40.0% |
| !! | CGTTTTGGCAAACAGTTTGT+AGG | - | chr8.2:7111609-7111628 | MS.gene051794:CDS | 40.0% |
| !! | GATCTTTGAAGCTTCCAGTA+TGG | + | chr8.2:7111671-7111690 | None:intergenic | 40.0% |
| !! | GGCTTGTTGATAAGATACCA+AGG | - | chr8.2:7112138-7112157 | MS.gene051794:CDS | 40.0% |
| !! | GTGTCTGTTAAGGCTGATTT+TGG | - | chr8.2:7112578-7112597 | MS.gene051794:CDS | 40.0% |
| !!! | GGCTGATTTTGGTTCTGTTA+TGG | - | chr8.2:7112589-7112608 | MS.gene051794:CDS | 40.0% |
| AAAATGAACCGTCCGTTGGT+CGG | - | chr8.2:7111732-7111751 | MS.gene051794:CDS | 45.0% | |
| ACCGGTATCAAATGGTGCAT+TGG | - | chr8.2:7111875-7111894 | MS.gene051794:CDS | 45.0% | |
| AGCCAGTGAAGAGGAATTGA+TGG | - | chr8.2:7112340-7112359 | MS.gene051794:CDS | 45.0% | |
| CACTGTGGTAATAGCCATAC+TGG | - | chr8.2:7111654-7111673 | MS.gene051794:CDS | 45.0% | |
| GCTGGTAGGAAAACAATCGA+AGG | + | chr8.2:7111825-7111844 | None:intergenic | 45.0% | |
| GTGGTTGTTAGTACTGCTCA+TGG | - | chr8.2:7112479-7112498 | MS.gene051794:intron | 45.0% | |
| GTTAAAGCCACACCAGTATG+AGG | + | chr8.2:7112407-7112426 | None:intergenic | 45.0% | |
| TGATTGGCAGGTACCTGATT+GGG | - | chr8.2:7112043-7112062 | MS.gene051794:CDS | 45.0% | |
| TTAGTCAGGTAAATCGCCTC+CGG | - | chr8.2:7111709-7111728 | MS.gene051794:CDS | 45.0% | |
| TTGATTGGCAGGTACCTGAT+TGG | - | chr8.2:7112042-7112061 | MS.gene051794:CDS | 45.0% | |
| TTTGCAGCAGTTTGATTGGC+AGG | - | chr8.2:7112031-7112050 | MS.gene051794:CDS | 45.0% | |
| ! | CTTTTCTGGGCTGAACGTTT+TGG | - | chr8.2:7111594-7111613 | MS.gene051794:CDS | 45.0% |
| ! | GCGGTTGAGATTTTATTCGC+TGG | + | chr8.2:7111843-7111862 | None:intergenic | 45.0% |
| !! | ATGGCACTTGCTGATTCAAC+TGG | - | chr8.2:7112368-7112387 | MS.gene051794:CDS | 45.0% |
| AACAACCACAACCCTCTCAC+TGG | + | chr8.2:7112468-7112487 | None:intergenic | 50.0% | |
| CCAGGTACAATCACCCAATC+AGG | + | chr8.2:7112059-7112078 | None:intergenic | 50.0% | |
| CCTGATTGGGTGATTGTACC+TGG | - | chr8.2:7112056-7112075 | MS.gene051794:CDS | 50.0% | |
| CGCTAACGATATCATCAGGG+TGG | + | chr8.2:7111554-7111573 | None:intergenic | 50.0% | |
| CTCCATACACCTGAACCGTA+AGG | + | chr8.2:7111504-7111523 | None:intergenic | 50.0% | |
| GATTGGGTGATTGTACCTGG+TGG | - | chr8.2:7112059-7112078 | MS.gene051794:CDS | 50.0% | |
| GGTTATTGGAGCCAGTGAGA+GGG | - | chr8.2:7112454-7112473 | MS.gene051794:intron | 50.0% | |
| TCAGCCTTAACAGACACAGG+TGG | + | chr8.2:7112575-7112594 | None:intergenic | 50.0% | |
| TCTGCTTATTGCGCTTCAGC+TGG | - | chr8.2:7111795-7111814 | MS.gene051794:CDS | 50.0% | |
| TGCTTCCACCGGTGATACAT+CGG | - | chr8.2:7111764-7111783 | MS.gene051794:CDS | 50.0% | |
| TGTTGAGGAAGCCAGTGAAG+AGG | - | chr8.2:7112331-7112350 | MS.gene051794:CDS | 50.0% | |
| ! | AACCGCGCAGTTGATTCAAC+CGG | - | chr8.2:7111857-7111876 | MS.gene051794:CDS | 50.0% |
| ! | CCAACGGACGGTTCATTTTC+CGG | + | chr8.2:7111731-7111750 | None:intergenic | 50.0% |
| ! | TACCGGTTGAATCAACTGCG+CGG | + | chr8.2:7111862-7111881 | None:intergenic | 50.0% |
| !! | CATCAGGGTGGATTTCTGGT+AGG | + | chr8.2:7111542-7111561 | None:intergenic | 50.0% |
| !! | GGGAAAACCACTTGGCCTTA+CGG | - | chr8.2:7111486-7111505 | MS.gene051794:CDS | 50.0% |
| AACCAACTCCGACCAACGGA+CGG | + | chr8.2:7111743-7111762 | None:intergenic | 55.0% | |
| ACCTGAACCGTAAGGCCAAG+TGG | + | chr8.2:7111496-7111515 | None:intergenic | 55.0% | |
| CCGGAAAATGAACCGTCCGT+TGG | - | chr8.2:7111728-7111747 | MS.gene051794:CDS | 55.0% | |
| GCACAACCAACTCCGACCAA+CGG | + | chr8.2:7111747-7111766 | None:intergenic | 55.0% | |
| GCTTGTGCACAAACCAGCCT+TGG | + | chr8.2:7112158-7112177 | None:intergenic | 55.0% | |
| GGCCTTACGGTTCAGGTGTA+TGG | - | chr8.2:7111499-7111518 | MS.gene051794:CDS | 55.0% | |
| GGGTTATTGGAGCCAGTGAG+AGG | - | chr8.2:7112453-7112472 | MS.gene051794:intron | 55.0% | |
| ! | AACCTCTTCGACTCGCGTGT+GGG | - | chr8.2:7111465-7111484 | MS.gene051794:CDS | 55.0% |
| ! | ACGGACGGTTCATTTTCCGG+AGG | + | chr8.2:7111728-7111747 | None:intergenic | 55.0% |
| ! | GAAGCACTCGCGAAGTTCGA+CGG | - | chr8.2:7111429-7111448 | MS.gene051794:CDS | 55.0% |
| ! | GGAGTTGGTTGTGCTTCCAC+CGG | - | chr8.2:7111753-7111772 | MS.gene051794:CDS | 55.0% |
| !! | ACCACTTGGCCTTACGGTTC+AGG | - | chr8.2:7111492-7111511 | MS.gene051794:CDS | 55.0% |
| AACCGTCCGTTGGTCGGAGT+TGG | - | chr8.2:7111738-7111757 | MS.gene051794:CDS | 60.0% | |
| CAGCGCAGCCGATGTATCAC+CGG | + | chr8.2:7111775-7111794 | None:intergenic | 60.0% | |
| CGCGTGTGGGGAAAACCACT+TGG | - | chr8.2:7111478-7111497 | MS.gene051794:CDS | 60.0% | |
| TGGAGCCAGTGAGAGGGTTG+TGG | - | chr8.2:7112460-7112479 | MS.gene051794:intron | 60.0% | |
| ! | ACCTCTTCGACTCGCGTGTG+GGG | - | chr8.2:7111466-7111485 | MS.gene051794:CDS | 60.0% |
| ! | CAACCTCTTCGACTCGCGTG+TGG | - | chr8.2:7111464-7111483 | MS.gene051794:CDS | 60.0% |
| CGAAGTTCGACGGCGCGTAC+TGG | - | chr8.2:7111439-7111458 | MS.gene051794:CDS | 65.0% | |
| CGCAGCCGATGTATCACCGG+TGG | + | chr8.2:7111772-7111791 | None:intergenic | 65.0% | |
| TCCCCACACGCGAGTCGAAG+AGG | + | chr8.2:7111470-7111489 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 7111421 | 7112652 | 7111421 | ID=MS.gene051794 |
| chr8.2 | mRNA | 7111421 | 7112652 | 7111421 | ID=MS.gene051794.t1;Parent=MS.gene051794 |
| chr8.2 | exon | 7112491 | 7112652 | 7112491 | ID=MS.gene051794.t1.exon1;Parent=MS.gene051794.t1 |
| chr8.2 | CDS | 7112491 | 7112652 | 7112491 | ID=cds.MS.gene051794.t1;Parent=MS.gene051794.t1 |
| chr8.2 | exon | 7111421 | 7112449 | 7111421 | ID=MS.gene051794.t1.exon2;Parent=MS.gene051794.t1 |
| chr8.2 | CDS | 7111421 | 7112449 | 7111421 | ID=cds.MS.gene051794.t1;Parent=MS.gene051794.t1 |
| Gene Sequence |
| Protein sequence |
