Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24844.t1 | XP_013458437.1 | 99.4 | 343 | 2 | 0 | 54 | 396 | 166 | 508 | 2.90E-193 | 684.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24844.t1 | Q9S7B5 | 85.5 | 338 | 48 | 1 | 54 | 390 | 182 | 519 | 1.8e-167 | 590.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24844.t1 | A0A072UTS3 | 99.4 | 343 | 2 | 0 | 54 | 396 | 166 | 508 | 2.1e-193 | 684.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051794 | MS.gene24844 | 0.972696 | 3.44E-135 | -1.69E-46 |
| MS.gene051825 | MS.gene24844 | 0.807391 | 5.17E-50 | -1.69E-46 |
| MS.gene051827 | MS.gene24844 | 0.888471 | 5.73E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24844.t1 | MTR_4g125700 | 99.417 | 343 | 2 | 0 | 54 | 396 | 166 | 508 | 0.0 | 706 |
| MS.gene24844.t1 | MTR_2g099510 | 84.593 | 344 | 52 | 1 | 54 | 396 | 187 | 530 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24844.t1 | AT4G29840 | 85.503 | 338 | 48 | 1 | 54 | 390 | 182 | 519 | 0.0 | 610 |
| MS.gene24844.t1 | AT1G72810 | 83.871 | 341 | 53 | 2 | 54 | 392 | 173 | 513 | 0.0 | 598 |
Find 99 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAATGTGTAAAGATTT+AGG | 0.134689 | 8.4:-9228772 | MS.gene24844:CDS |
| TTCTGAATTACCGATATATT+TGG | 0.191664 | 8.4:-9228935 | MS.gene24844:CDS |
| AGTAAGATTGATTATCATTC+TGG | 0.199505 | 8.4:-9228370 | MS.gene24844:CDS |
| CTCAGGAATAATGGGGTTAT+TGG | 0.245982 | 8.4:-9228448 | MS.gene24844:CDS |
| ATTGTACCTGGTGGAAATTT+AGG | 0.246107 | 8.4:-9228820 | MS.gene24844:CDS |
| ATATCATCAGGGTGGATTTC+TGG | 0.247855 | 8.4:+9229345 | None:intergenic |
| TTGATTAAACTCAGGAATAA+TGG | 0.260884 | 8.4:-9228457 | MS.gene24844:CDS |
| GTGTCTGTTAAGGCTGATTT+TGG | 0.270510 | 8.4:-9228310 | MS.gene24844:CDS |
| TCAAAATGTGTAAAGATTTA+GGG | 0.279636 | 8.4:-9228771 | MS.gene24844:CDS |
| ATGGTTGTATGAAGCTGATT+AGG | 0.316364 | 8.4:-9228966 | MS.gene24844:CDS |
| ACCACTTGGCCTTACGGTTC+AGG | 0.317729 | 8.4:-9229396 | MS.gene24844:CDS |
| TTGTAGGCATGAACGATCTT+TGG | 0.318466 | 8.4:-9229263 | MS.gene24844:CDS |
| TGATTAAACTCAGGAATAAT+GGG | 0.322866 | 8.4:-9228456 | MS.gene24844:CDS |
| GGCCTTACGGTTCAGGTGTA+TGG | 0.326197 | 8.4:-9229389 | MS.gene24844:CDS |
| TTGTACCTGGTGGAAATTTA+GGG | 0.337501 | 8.4:-9228819 | MS.gene24844:CDS |
| TTCAATTCGTAAACTATTCA+AGG | 0.352361 | 8.4:+9228906 | None:intergenic |
| CACTGTGGTAATAGCCATAC+TGG | 0.361097 | 8.4:-9229234 | MS.gene24844:CDS |
| TCTGGGAATATTGTTGGTAT+TGG | 0.386215 | 8.4:-9228352 | MS.gene24844:CDS |
| GATCTTTGAAGCTTCCAGTA+TGG | 0.386403 | 8.4:+9229220 | None:intergenic |
| CGAAGTTCGACGGCGCGTAC+TGG | 0.391694 | 8.4:-9229449 | MS.gene24844:CDS |
| ACTGGAAGCTTCAAAGATCT+TGG | 0.393842 | 8.4:-9229216 | MS.gene24844:CDS |
| TGTAGGCATGAACGATCTTT+GGG | 0.399165 | 8.4:-9229262 | MS.gene24844:CDS |
| TTGTATTTGTATTATAAGAA+TGG | 0.406563 | 8.4:-9228694 | MS.gene24844:CDS |
| TCTGCTTATTGCGCTTCAGC+TGG | 0.409965 | 8.4:-9229093 | MS.gene24844:CDS |
| ATGTTTATTTGTCCTCATAC+TGG | 0.412669 | 8.4:-9228496 | MS.gene24844:CDS |
| ATCCATCAATTCCTCTTCAC+TGG | 0.414822 | 8.4:+9228546 | None:intergenic |
| TATCATTCTGGGAATATTGT+TGG | 0.416039 | 8.4:-9228358 | MS.gene24844:CDS |
| TTGAATAGTTTACGAATTGA+AGG | 0.416111 | 8.4:-9228904 | MS.gene24844:CDS |
| ATGGCACTTGCTGATTCAAC+TGG | 0.418295 | 8.4:-9228520 | MS.gene24844:CDS |
| TTTGCTTCTGCTATTCAGAT+TGG | 0.423112 | 8.4:-9228634 | MS.gene24844:CDS |
| AGCCAGTGAAGAGGAATTGA+TGG | 0.425665 | 8.4:-9228548 | MS.gene24844:CDS |
| AAGGAATTCGCCAAATATAT+CGG | 0.426752 | 8.4:+9228925 | None:intergenic |
| AATGACTGTGCTTGTTAGTC+AGG | 0.431806 | 8.4:-9229193 | MS.gene24844:CDS |
| GGGAAAACCACTTGGCCTTA+CGG | 0.436987 | 8.4:-9229402 | MS.gene24844:CDS |
| TTCAGGTGTATGGAGCAAAA+AGG | 0.437179 | 8.4:-9229379 | MS.gene24844:CDS |
| AAAGCGCTAACGATATCATC+AGG | 0.438146 | 8.4:+9229333 | None:intergenic |
| TTTGCAGCAGTTTGATTGGC+AGG | 0.441607 | 8.4:-9228857 | MS.gene24844:CDS |
| TGGTTGTATGAAGCTGATTA+GGG | 0.444344 | 8.4:-9228965 | MS.gene24844:CDS |
| TAATCCACCTGTGTCTGTTA+AGG | 0.451369 | 8.4:-9228320 | MS.gene24844:CDS |
| ACAGCTCTATCAATTGAAAC+AGG | 0.468555 | 8.4:+9228607 | None:intergenic |
| GTAAGATTGATTATCATTCT+GGG | 0.468628 | 8.4:-9228369 | MS.gene24844:CDS |
| ATTTGTATTATAAGAATGGT+TGG | 0.468821 | 8.4:-9228690 | MS.gene24844:CDS |
| AACCTCTTCGACTCGCGTGT+GGG | 0.484266 | 8.4:-9229423 | MS.gene24844:CDS |
| CCAGGTACAATCACCCAATC+AGG | 0.486304 | 8.4:+9228832 | None:intergenic |
| GGAGTTGGTTGTGCTTCCAC+CGG | 0.488070 | 8.4:-9229135 | MS.gene24844:CDS |
| AACCGTCCGTTGGTCGGAGT+TGG | 0.488563 | 8.4:-9229150 | MS.gene24844:CDS |
| TTGATTGGCAGGTACCTGAT+TGG | 0.489621 | 8.4:-9228846 | MS.gene24844:CDS |
| CGCGTGTGGGGAAAACCACT+TGG | 0.493520 | 8.4:-9229410 | MS.gene24844:CDS |
| CCTGATTGGGTGATTGTACC+TGG | 0.494816 | 8.4:-9228832 | MS.gene24844:CDS |
| TGATTGGCAGGTACCTGATT+GGG | 0.499461 | 8.4:-9228845 | MS.gene24844:CDS |
| TGGAGCCAGTGAGAGGGTTG+TGG | 0.505753 | 8.4:-9228428 | MS.gene24844:CDS |
| CAACCTCTTCGACTCGCGTG+TGG | 0.509904 | 8.4:-9229424 | MS.gene24844:CDS |
| TTGATTCAACCGGTATCAAA+TGG | 0.513680 | 8.4:-9229021 | MS.gene24844:CDS |
| GTGGTTGTTAGTACTGCTCA+TGG | 0.517105 | 8.4:-9228409 | MS.gene24844:CDS |
| ACCAATGCACCATTTGATAC+CGG | 0.522774 | 8.4:+9229012 | None:intergenic |
| TCGCGAGTGCTTCGATGTCA+TGG | 0.529208 | 8.4:+9229469 | None:intergenic |
| AACCGCGCAGTTGATTCAAC+CGG | 0.530203 | 8.4:-9229031 | MS.gene24844:CDS |
| GTTAAAGCCACACCAGTATG+AGG | 0.530207 | 8.4:+9228484 | None:intergenic |
| ACCGGTATCAAATGGTGCAT+TGG | 0.530776 | 8.4:-9229013 | MS.gene24844:CDS |
| TGTTGATAAGATACCAAGGC+TGG | 0.532452 | 8.4:-9228746 | MS.gene24844:CDS |
| TAACTGCTTTGATTAAACTC+AGG | 0.539179 | 8.4:-9228465 | MS.gene24844:CDS |
| AACAACCACAACCCTCTCAC+TGG | 0.543564 | 8.4:+9228423 | None:intergenic |
| ACCTCTTCGACTCGCGTGTG+GGG | 0.547841 | 8.4:-9229422 | MS.gene24844:CDS |
| GCTTGTGCACAAACCAGCCT+TGG | 0.551031 | 8.4:+9228733 | None:intergenic |
| TGCTTCCACCGGTGATACAT+CGG | 0.553305 | 8.4:-9229124 | MS.gene24844:CDS |
| TTAGTCAGGTAAATCGCCTC+CGG | 0.556393 | 8.4:-9229179 | MS.gene24844:CDS |
| TATGCATTGAAGAATTCTGA+TGG | 0.567257 | 8.4:-9228583 | MS.gene24844:CDS |
| CAGCGCAGCCGATGTATCAC+CGG | 0.572600 | 8.4:+9229116 | None:intergenic |
| TCCCCACACGCGAGTCGAAG+AGG | 0.573166 | 8.4:+9229421 | None:intergenic |
| ATGCATTGAAGAATTCTGAT+GGG | 0.574216 | 8.4:-9228582 | MS.gene24844:CDS |
| TATTTGTCCTCATACTGGTG+TGG | 0.574702 | 8.4:-9228491 | MS.gene24844:CDS |
| GAAGCACTCGCGAAGTTCGA+CGG | 0.577029 | 8.4:-9229459 | MS.gene24844:CDS |
| GGGTTATTGGAGCCAGTGAG+AGG | 0.577743 | 8.4:-9228435 | MS.gene24844:CDS |
| GATTAAACTCAGGAATAATG+GGG | 0.580133 | 8.4:-9228455 | MS.gene24844:CDS |
| CCTTGGACTACAAACTACTT+CGG | 0.589244 | 8.4:+9228244 | None:intergenic |
| AAAATGAACCGTCCGTTGGT+CGG | 0.591612 | 8.4:-9229156 | MS.gene24844:CDS |
| TTCTTATAATACAAATACAA+AGG | 0.596623 | 8.4:+9228697 | None:intergenic |
| CTCCATACACCTGAACCGTA+AGG | 0.596883 | 8.4:+9229387 | None:intergenic |
| GCACAACCAACTCCGACCAA+CGG | 0.599617 | 8.4:+9229144 | None:intergenic |
| CGCAGCCGATGTATCACCGG+TGG | 0.601314 | 8.4:+9229119 | None:intergenic |
| TGTTGAGGAAGCCAGTGAAG+AGG | 0.612541 | 8.4:-9228557 | MS.gene24844:CDS |
| CCGGAAAATGAACCGTCCGT+TGG | 0.613505 | 8.4:-9229160 | MS.gene24844:CDS |
| AACCAACTCCGACCAACGGA+CGG | 0.618009 | 8.4:+9229148 | None:intergenic |
| GAATTCTGATGGGATTGTTG+AGG | 0.621403 | 8.4:-9228572 | MS.gene24844:CDS |
| AAATCAGCCTTAACAGACAC+AGG | 0.623027 | 8.4:+9228313 | None:intergenic |
| CATCAGGGTGGATTTCTGGT+AGG | 0.634205 | 8.4:+9229349 | None:intergenic |
| GGTTATTGGAGCCAGTGAGA+GGG | 0.634474 | 8.4:-9228434 | MS.gene24844:CDS |
| ACCTGAACCGTAAGGCCAAG+TGG | 0.644246 | 8.4:+9229395 | None:intergenic |
| AGAGTTTAAAGCGATTAAAG+CGG | 0.650024 | 8.4:-9228665 | MS.gene24844:CDS |
| CGCTAACGATATCATCAGGG+TGG | 0.654724 | 8.4:+9229337 | None:intergenic |
| ATATTCCCTAAATTTCCACC+AGG | 0.655231 | 8.4:+9228814 | None:intergenic |
| AGAGGAATTGATGGATGCAA+TGG | 0.657723 | 8.4:-9228539 | MS.gene24844:CDS |
| GGCTTGTTGATAAGATACCA+AGG | 0.657922 | 8.4:-9228750 | MS.gene24844:CDS |
| GCTGGTAGGAAAACAATCGA+AGG | 0.673402 | 8.4:+9229066 | None:intergenic |
| AAGCGCTAACGATATCATCA+GGG | 0.689325 | 8.4:+9229334 | None:intergenic |
| TCAGCCTTAACAGACACAGG+TGG | 0.717631 | 8.4:+9228316 | None:intergenic |
| GATCTTTGGGTTAAACACTG+TGG | 0.724956 | 8.4:-9229249 | MS.gene24844:CDS |
| TACCGGTTGAATCAACTGCG+CGG | 0.770329 | 8.4:+9229029 | None:intergenic |
| GATTGGGTGATTGTACCTGG+TGG | 0.786775 | 8.4:-9228829 | MS.gene24844:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTATAATACAAATACAA+AGG | + | chr8.4:9229031-9229050 | None:intergenic | 15.0% |
| !! | TTGTATTTGTATTATAAGAA+TGG | - | chr8.4:9229031-9229050 | MS.gene24844:CDS | 15.0% |
| !!! | AATATTTATGCATTTTACAA+AGG | - | chr8.4:9228929-9228948 | MS.gene24844:CDS | 15.0% |
| !! | ATTTGTATTATAAGAATGGT+TGG | - | chr8.4:9229035-9229054 | MS.gene24844:CDS | 20.0% |
| !! | TCAAAATGTGTAAAGATTTA+GGG | - | chr8.4:9228954-9228973 | MS.gene24844:CDS | 20.0% |
| !! | TTCAAAATGTGTAAAGATTT+AGG | - | chr8.4:9228953-9228972 | MS.gene24844:CDS | 20.0% |
| ! | AGTAAGATTGATTATCATTC+TGG | - | chr8.4:9229355-9229374 | MS.gene24844:CDS | 25.0% |
| ! | GTAAGATTGATTATCATTCT+GGG | - | chr8.4:9229356-9229375 | MS.gene24844:CDS | 25.0% |
| ! | TGATTAAACTCAGGAATAAT+GGG | - | chr8.4:9229269-9229288 | MS.gene24844:intron | 25.0% |
| ! | TTCAATTCGTAAACTATTCA+AGG | + | chr8.4:9228822-9228841 | None:intergenic | 25.0% |
| ! | TTCTGAATTACCGATATATT+TGG | - | chr8.4:9228790-9228809 | MS.gene24844:CDS | 25.0% |
| ! | TTGAATAGTTTACGAATTGA+AGG | - | chr8.4:9228821-9228840 | MS.gene24844:CDS | 25.0% |
| ! | TTGATTAAACTCAGGAATAA+TGG | - | chr8.4:9229268-9229287 | MS.gene24844:intron | 25.0% |
| !!! | AGTATTGATACTGATTTTGA+TGG | - | chr8.4:9228740-9228759 | MS.gene24844:CDS | 25.0% |
| AAGGAATTCGCCAAATATAT+CGG | + | chr8.4:9228803-9228822 | None:intergenic | 30.0% | |
| ATGCATTGAAGAATTCTGAT+GGG | - | chr8.4:9229143-9229162 | MS.gene24844:CDS | 30.0% | |
| ATGTTTATTTGTCCTCATAC+TGG | - | chr8.4:9229229-9229248 | MS.gene24844:CDS | 30.0% | |
| GATTAAACTCAGGAATAATG+GGG | - | chr8.4:9229270-9229289 | MS.gene24844:intron | 30.0% | |
| TAACTGCTTTGATTAAACTC+AGG | - | chr8.4:9229260-9229279 | MS.gene24844:CDS | 30.0% | |
| TATGCATTGAAGAATTCTGA+TGG | - | chr8.4:9229142-9229161 | MS.gene24844:CDS | 30.0% | |
| ! | AAGGTAACTCTAATCTTTTC+TGG | - | chr8.4:9228417-9228436 | MS.gene24844:CDS | 30.0% |
| ! | AGAGTTTAAAGCGATTAAAG+CGG | - | chr8.4:9229060-9229079 | MS.gene24844:CDS | 30.0% |
| ! | AGGTAACTCTAATCTTTTCT+GGG | - | chr8.4:9228418-9228437 | MS.gene24844:CDS | 30.0% |
| ! | TATCATTCTGGGAATATTGT+TGG | - | chr8.4:9229367-9229386 | MS.gene24844:CDS | 30.0% |
| ACAGCTCTATCAATTGAAAC+AGG | + | chr8.4:9229121-9229140 | None:intergenic | 35.0% | |
| ATATTCCCTAAATTTCCACC+AGG | + | chr8.4:9228914-9228933 | None:intergenic | 35.0% | |
| ATGGTTGTATGAAGCTGATT+AGG | - | chr8.4:9228759-9228778 | MS.gene24844:CDS | 35.0% | |
| ATTGTACCTGGTGGAAATTT+AGG | - | chr8.4:9228905-9228924 | MS.gene24844:CDS | 35.0% | |
| TCTGGGAATATTGTTGGTAT+TGG | - | chr8.4:9229373-9229392 | MS.gene24844:CDS | 35.0% | |
| TGGTTGTATGAAGCTGATTA+GGG | - | chr8.4:9228760-9228779 | MS.gene24844:CDS | 35.0% | |
| TGTATGGAGCAAAAAGGAAT+GGG | - | chr8.4:9228352-9228371 | MS.gene24844:CDS | 35.0% | |
| TTGATTCAACCGGTATCAAA+TGG | - | chr8.4:9228704-9228723 | MS.gene24844:CDS | 35.0% | |
| TTGTACCTGGTGGAAATTTA+GGG | - | chr8.4:9228906-9228925 | MS.gene24844:CDS | 35.0% | |
| TTTGCTTCTGCTATTCAGAT+TGG | - | chr8.4:9229091-9229110 | MS.gene24844:CDS | 35.0% | |
| ! | AGATTTTGCAGCAGTTTGAT+TGG | - | chr8.4:9228864-9228883 | MS.gene24844:CDS | 35.0% |
| ! | TTGAGATTTTATTCGCTGGT+AGG | + | chr8.4:9228676-9228695 | None:intergenic | 35.0% |
| AAATCAGCCTTAACAGACAC+AGG | + | chr8.4:9229415-9229434 | None:intergenic | 40.0% | |
| AAGCGCTAACGATATCATCA+GGG | + | chr8.4:9228394-9228413 | None:intergenic | 40.0% | |
| ACCAATGCACCATTTGATAC+CGG | + | chr8.4:9228716-9228735 | None:intergenic | 40.0% | |
| ACTGGAAGCTTCAAAGATCT+TGG | - | chr8.4:9228509-9228528 | MS.gene24844:CDS | 40.0% | |
| ATCCATCAATTCCTCTTCAC+TGG | + | chr8.4:9229182-9229201 | None:intergenic | 40.0% | |
| GAATTCTGATGGGATTGTTG+AGG | - | chr8.4:9229153-9229172 | MS.gene24844:CDS | 40.0% | |
| GTGTATGGAGCAAAAAGGAA+TGG | - | chr8.4:9228351-9228370 | MS.gene24844:CDS | 40.0% | |
| TAATCCACCTGTGTCTGTTA+AGG | - | chr8.4:9229405-9229424 | MS.gene24844:CDS | 40.0% | |
| TATTTGTCCTCATACTGGTG+TGG | - | chr8.4:9229234-9229253 | MS.gene24844:CDS | 40.0% | |
| TGTAGGCATGAACGATCTTT+GGG | - | chr8.4:9228463-9228482 | MS.gene24844:CDS | 40.0% | |
| TTCAGGTGTATGGAGCAAAA+AGG | - | chr8.4:9228346-9228365 | MS.gene24844:CDS | 40.0% | |
| TTGTAGGCATGAACGATCTT+TGG | - | chr8.4:9228462-9228481 | MS.gene24844:CDS | 40.0% | |
| ! | AAAGCGCTAACGATATCATC+AGG | + | chr8.4:9228395-9228414 | None:intergenic | 40.0% |
| ! | AATGACTGTGCTTGTTAGTC+AGG | - | chr8.4:9228532-9228551 | MS.gene24844:CDS | 40.0% |
| ! | AGAGGAATTGATGGATGCAA+TGG | - | chr8.4:9229186-9229205 | MS.gene24844:CDS | 40.0% |
| ! | ATATCATCAGGGTGGATTTC+TGG | + | chr8.4:9228383-9228402 | None:intergenic | 40.0% |
| ! | CTCAGGAATAATGGGGTTAT+TGG | - | chr8.4:9229277-9229296 | MS.gene24844:intron | 40.0% |
| ! | GATATCGTTAGCGCTTTTGA+AGG | - | chr8.4:9228398-9228417 | MS.gene24844:CDS | 40.0% |
| ! | GATCTTTGGGTTAAACACTG+TGG | - | chr8.4:9228476-9228495 | MS.gene24844:CDS | 40.0% |
| ! | TGTTGATAAGATACCAAGGC+TGG | - | chr8.4:9228979-9228998 | MS.gene24844:CDS | 40.0% |
| !! | CGTTTTGGCAAACAGTTTGT+AGG | - | chr8.4:9228446-9228465 | MS.gene24844:CDS | 40.0% |
| !! | GATCTTTGAAGCTTCCAGTA+TGG | + | chr8.4:9228508-9228527 | None:intergenic | 40.0% |
| !! | GGCTTGTTGATAAGATACCA+AGG | - | chr8.4:9228975-9228994 | MS.gene24844:CDS | 40.0% |
| !! | GTGTCTGTTAAGGCTGATTT+TGG | - | chr8.4:9229415-9229434 | MS.gene24844:CDS | 40.0% |
| !!! | GGCTGATTTTGGTTCTGTTA+TGG | - | chr8.4:9229426-9229445 | MS.gene24844:CDS | 40.0% |
| AAAATGAACCGTCCGTTGGT+CGG | - | chr8.4:9228569-9228588 | MS.gene24844:CDS | 45.0% | |
| ACCGGTATCAAATGGTGCAT+TGG | - | chr8.4:9228712-9228731 | MS.gene24844:CDS | 45.0% | |
| AGCCAGTGAAGAGGAATTGA+TGG | - | chr8.4:9229177-9229196 | MS.gene24844:CDS | 45.0% | |
| CACTGTGGTAATAGCCATAC+TGG | - | chr8.4:9228491-9228510 | MS.gene24844:CDS | 45.0% | |
| GCTGGTAGGAAAACAATCGA+AGG | + | chr8.4:9228662-9228681 | None:intergenic | 45.0% | |
| GTGGTTGTTAGTACTGCTCA+TGG | - | chr8.4:9229316-9229335 | MS.gene24844:intron | 45.0% | |
| GTTAAAGCCACACCAGTATG+AGG | + | chr8.4:9229244-9229263 | None:intergenic | 45.0% | |
| TGATTGGCAGGTACCTGATT+GGG | - | chr8.4:9228880-9228899 | MS.gene24844:CDS | 45.0% | |
| TTAGTCAGGTAAATCGCCTC+CGG | - | chr8.4:9228546-9228565 | MS.gene24844:CDS | 45.0% | |
| TTGATTGGCAGGTACCTGAT+TGG | - | chr8.4:9228879-9228898 | MS.gene24844:CDS | 45.0% | |
| TTTGCAGCAGTTTGATTGGC+AGG | - | chr8.4:9228868-9228887 | MS.gene24844:CDS | 45.0% | |
| ! | CTTTTCTGGGCTGAACGTTT+TGG | - | chr8.4:9228431-9228450 | MS.gene24844:CDS | 45.0% |
| ! | GCGGTTGAGATTTTATTCGC+TGG | + | chr8.4:9228680-9228699 | None:intergenic | 45.0% |
| !! | ATGGCACTTGCTGATTCAAC+TGG | - | chr8.4:9229205-9229224 | MS.gene24844:CDS | 45.0% |
| AACAACCACAACCCTCTCAC+TGG | + | chr8.4:9229305-9229324 | None:intergenic | 50.0% | |
| CCAGGTACAATCACCCAATC+AGG | + | chr8.4:9228896-9228915 | None:intergenic | 50.0% | |
| CCTGATTGGGTGATTGTACC+TGG | - | chr8.4:9228893-9228912 | MS.gene24844:CDS | 50.0% | |
| CGCTAACGATATCATCAGGG+TGG | + | chr8.4:9228391-9228410 | None:intergenic | 50.0% | |
| CTCCATACACCTGAACCGTA+AGG | + | chr8.4:9228341-9228360 | None:intergenic | 50.0% | |
| GATTGGGTGATTGTACCTGG+TGG | - | chr8.4:9228896-9228915 | MS.gene24844:CDS | 50.0% | |
| GGTTATTGGAGCCAGTGAGA+GGG | - | chr8.4:9229291-9229310 | MS.gene24844:intron | 50.0% | |
| TCAGCCTTAACAGACACAGG+TGG | + | chr8.4:9229412-9229431 | None:intergenic | 50.0% | |
| TCTGCTTATTGCGCTTCAGC+TGG | - | chr8.4:9228632-9228651 | MS.gene24844:CDS | 50.0% | |
| TGCTTCCACCGGTGATACAT+CGG | - | chr8.4:9228601-9228620 | MS.gene24844:CDS | 50.0% | |
| TGTTGAGGAAGCCAGTGAAG+AGG | - | chr8.4:9229168-9229187 | MS.gene24844:CDS | 50.0% | |
| ! | AACCGCGCAGTTGATTCAAC+CGG | - | chr8.4:9228694-9228713 | MS.gene24844:CDS | 50.0% |
| ! | CCAACGGACGGTTCATTTTC+CGG | + | chr8.4:9228568-9228587 | None:intergenic | 50.0% |
| ! | TACCGGTTGAATCAACTGCG+CGG | + | chr8.4:9228699-9228718 | None:intergenic | 50.0% |
| !! | CATCAGGGTGGATTTCTGGT+AGG | + | chr8.4:9228379-9228398 | None:intergenic | 50.0% |
| !! | GGGAAAACCACTTGGCCTTA+CGG | - | chr8.4:9228323-9228342 | MS.gene24844:CDS | 50.0% |
| AACCAACTCCGACCAACGGA+CGG | + | chr8.4:9228580-9228599 | None:intergenic | 55.0% | |
| ACCTGAACCGTAAGGCCAAG+TGG | + | chr8.4:9228333-9228352 | None:intergenic | 55.0% | |
| CCGGAAAATGAACCGTCCGT+TGG | - | chr8.4:9228565-9228584 | MS.gene24844:CDS | 55.0% | |
| GCACAACCAACTCCGACCAA+CGG | + | chr8.4:9228584-9228603 | None:intergenic | 55.0% | |
| GCTTGTGCACAAACCAGCCT+TGG | + | chr8.4:9228995-9229014 | None:intergenic | 55.0% | |
| GGCCTTACGGTTCAGGTGTA+TGG | - | chr8.4:9228336-9228355 | MS.gene24844:CDS | 55.0% | |
| GGGTTATTGGAGCCAGTGAG+AGG | - | chr8.4:9229290-9229309 | MS.gene24844:intron | 55.0% | |
| ! | AACCTCTTCGACTCGCGTGT+GGG | - | chr8.4:9228302-9228321 | MS.gene24844:CDS | 55.0% |
| ! | ACGGACGGTTCATTTTCCGG+AGG | + | chr8.4:9228565-9228584 | None:intergenic | 55.0% |
| ! | GAAGCACTCGCGAAGTTCGA+CGG | - | chr8.4:9228266-9228285 | MS.gene24844:CDS | 55.0% |
| ! | GGAGTTGGTTGTGCTTCCAC+CGG | - | chr8.4:9228590-9228609 | MS.gene24844:CDS | 55.0% |
| !! | ACCACTTGGCCTTACGGTTC+AGG | - | chr8.4:9228329-9228348 | MS.gene24844:CDS | 55.0% |
| AACCGTCCGTTGGTCGGAGT+TGG | - | chr8.4:9228575-9228594 | MS.gene24844:CDS | 60.0% | |
| CAGCGCAGCCGATGTATCAC+CGG | + | chr8.4:9228612-9228631 | None:intergenic | 60.0% | |
| CGCGTGTGGGGAAAACCACT+TGG | - | chr8.4:9228315-9228334 | MS.gene24844:CDS | 60.0% | |
| TGGAGCCAGTGAGAGGGTTG+TGG | - | chr8.4:9229297-9229316 | MS.gene24844:intron | 60.0% | |
| ! | ACCTCTTCGACTCGCGTGTG+GGG | - | chr8.4:9228303-9228322 | MS.gene24844:CDS | 60.0% |
| ! | CAACCTCTTCGACTCGCGTG+TGG | - | chr8.4:9228301-9228320 | MS.gene24844:CDS | 60.0% |
| CGAAGTTCGACGGCGCGTAC+TGG | - | chr8.4:9228276-9228295 | MS.gene24844:CDS | 65.0% | |
| CGCAGCCGATGTATCACCGG+TGG | + | chr8.4:9228609-9228628 | None:intergenic | 65.0% | |
| TCCCCACACGCGAGTCGAAG+AGG | + | chr8.4:9228307-9228326 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 9228258 | 9229489 | 9228258 | ID=MS.gene24844 |
| chr8.4 | mRNA | 9228258 | 9229489 | 9228258 | ID=MS.gene24844.t1;Parent=MS.gene24844 |
| chr8.4 | exon | 9229328 | 9229489 | 9229328 | ID=MS.gene24844.t1.exon1;Parent=MS.gene24844.t1 |
| chr8.4 | CDS | 9229328 | 9229489 | 9229328 | ID=cds.MS.gene24844.t1;Parent=MS.gene24844.t1 |
| chr8.4 | exon | 9228258 | 9229286 | 9228258 | ID=MS.gene24844.t1.exon2;Parent=MS.gene24844.t1 |
| chr8.4 | CDS | 9228258 | 9229286 | 9228258 | ID=cds.MS.gene24844.t1;Parent=MS.gene24844.t1 |
| Gene Sequence |
| Protein sequence |
