Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24856.t1 | XP_024637181.1 | 85.5 | 488 | 63 | 4 | 1 | 484 | 1 | 484 | 3.20E-226 | 794.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24856.t1 | Q9M2U3 | 28.7 | 324 | 192 | 9 | 144 | 440 | 53 | 364 | 1.6e-32 | 142.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24856.t1 | A0A396IIE8 | 85.5 | 488 | 63 | 4 | 1 | 484 | 1 | 484 | 2.3e-226 | 794.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049160 | MS.gene24856 | 0.80493 | 1.70E-49 | -1.69E-46 |
| MS.gene04998 | MS.gene24856 | 0.831064 | 2.06E-55 | -1.69E-46 |
| MS.gene051226 | MS.gene24856 | 0.864508 | 1.16E-64 | -1.69E-46 |
| MS.gene051837 | MS.gene24856 | 0.980865 | 3.24E-151 | -1.69E-46 |
| MS.gene051840 | MS.gene24856 | 0.817607 | 3.02E-52 | -1.69E-46 |
| MS.gene053499 | MS.gene24856 | 0.839354 | 1.67E-57 | -1.69E-46 |
| MS.gene053501 | MS.gene24856 | 0.804403 | 2.20E-49 | -1.69E-46 |
| MS.gene054617 | MS.gene24856 | 0.842079 | 3.22E-58 | -1.69E-46 |
| MS.gene057093 | MS.gene24856 | 0.821106 | 4.82E-53 | -1.69E-46 |
| MS.gene057422 | MS.gene24856 | 0.815475 | 9.07E-52 | -1.69E-46 |
| MS.gene057432 | MS.gene24856 | 0.849386 | 3.34E-60 | -1.69E-46 |
| MS.gene06061 | MS.gene24856 | 0.841971 | 3.44E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24856.t1 | AT5G12010 | 63.271 | 373 | 133 | 2 | 116 | 484 | 129 | 501 | 0.0 | 516 |
| MS.gene24856.t1 | AT4G29780 | 49.543 | 547 | 199 | 9 | 1 | 481 | 1 | 536 | 4.01e-177 | 508 |
| MS.gene24856.t1 | AT3G55350 | 28.704 | 324 | 192 | 9 | 144 | 440 | 53 | 364 | 4.01e-37 | 141 |
| MS.gene24856.t1 | AT3G63270 | 30.159 | 315 | 185 | 10 | 144 | 431 | 43 | 349 | 1.18e-36 | 139 |
| MS.gene24856.t1 | AT3G19120 | 24.839 | 310 | 193 | 8 | 156 | 443 | 114 | 405 | 3.02e-23 | 102 |
Find 115 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGATGGATGGAATTT+TGG | 0.058357 | 8.2:+6737693 | MS.gene24856:CDS |
| TCTTGGGTTGTTGGAAATTC+TGG | 0.088510 | 8.2:+6737667 | MS.gene24856:CDS |
| CTCTTTGAAACCAGCCTTAA+AGG | 0.137684 | 8.2:-6737241 | None:intergenic |
| ACATTTGGTTGTTCCATTTC+AGG | 0.175257 | 8.2:-6736671 | None:intergenic |
| TTGCCACCGGTGATCCTTTA+AGG | 0.178844 | 8.2:+6737227 | MS.gene24856:CDS |
| CATTTCTGCCACCAGTCTTT+TGG | 0.195355 | 8.2:-6737037 | None:intergenic |
| AACTCTTCCTCCGGAAATTC+TGG | 0.218374 | 8.2:-6737067 | None:intergenic |
| TTGGACTTAGGTGCAATTAT+TGG | 0.242423 | 8.2:-6737448 | None:intergenic |
| GAGGAGTTGCCTGGTGTTCT+TGG | 0.249284 | 8.2:+6737859 | MS.gene24856:CDS |
| AAACAGCTGATTCAAGTTCT+TGG | 0.262964 | 8.2:-6737135 | None:intergenic |
| TTCACCCATAACCGTCTTAC+TGG | 0.272495 | 8.2:-6737007 | None:intergenic |
| GTCAAATTCTGATGTGTATA+AGG | 0.284658 | 8.2:-6737718 | None:intergenic |
| CAGGGAATTTGAAAGATTCT+TGG | 0.293250 | 8.2:+6737650 | MS.gene24856:CDS |
| TTGCTAAGGGATGCAATTCC+CGG | 0.296879 | 8.2:+6737172 | MS.gene24856:CDS |
| CGAACGTTGCTTTGCTCATC+CGG | 0.309148 | 8.2:-6737102 | None:intergenic |
| CTTGGGTTGTTGGAAATTCT+GGG | 0.311033 | 8.2:+6737668 | MS.gene24856:CDS |
| TTATAATGATGATCAGGTTT+TGG | 0.315416 | 8.2:+6737597 | MS.gene24856:CDS |
| AAGAGTTCAGGAGATGTTTC+CGG | 0.316563 | 8.2:+6737083 | MS.gene24856:CDS |
| GGTGATTGTTGTTGTGTTGT+TGG | 0.332434 | 8.2:-6736851 | None:intergenic |
| AGCGCGTGGCGGTTTGTATC+TGG | 0.334097 | 8.2:+6737200 | MS.gene24856:CDS |
| AAATTCTGGGTTCCCTTTGA+TGG | 0.337782 | 8.2:+6737681 | MS.gene24856:CDS |
| ATGCAGCAGTCCAGAATTTC+CGG | 0.340952 | 8.2:+6737057 | MS.gene24856:CDS |
| ATTGCAGTTGTTGTTGTTGT+TGG | 0.343200 | 8.2:-6736762 | None:intergenic |
| AACCGCCACGCGCTGCCGCC+CGG | 0.343618 | 8.2:-6737191 | None:intergenic |
| TGAATTCTTATTTCAATAAG+AGG | 0.366055 | 8.2:+6737473 | MS.gene24856:CDS |
| TTGAAAGATTCTTGGGTTGT+TGG | 0.375328 | 8.2:+6737658 | MS.gene24856:CDS |
| CAAATCGAATGAGAGTATTA+AGG | 0.375622 | 8.2:-6736808 | None:intergenic |
| TACATTGAACCACCAACATT+TGG | 0.379629 | 8.2:-6737412 | None:intergenic |
| ACCGCCACGCGCTGCCGCCC+GGG | 0.388713 | 8.2:-6737190 | None:intergenic |
| CTGTGATTGTGATGAATCTT+CGG | 0.392333 | 8.2:-6736717 | None:intergenic |
| CATTTGGTTGTTCCATTTCA+GGG | 0.397112 | 8.2:-6736670 | None:intergenic |
| GGTTTCAAAGAGGTTCGGTT+TGG | 0.398582 | 8.2:+6737252 | MS.gene24856:CDS |
| GCATACTCTGTTACTGTTCA+AGG | 0.400851 | 8.2:+6737520 | MS.gene24856:CDS |
| AATTTCCGGAGGAAGAGTTC+AGG | 0.409085 | 8.2:+6737071 | MS.gene24856:CDS |
| TGGTTCTTATAATGATGATC+AGG | 0.413194 | 8.2:+6737591 | MS.gene24856:CDS |
| AGGGAATTTGAAAGATTCTT+GGG | 0.414339 | 8.2:+6737651 | MS.gene24856:CDS |
| ATCAAAATCAATCTCAAAGC+TGG | 0.418194 | 8.2:-6736894 | None:intergenic |
| GTTTCAAAGAGGTTCGGTTT+GGG | 0.421074 | 8.2:+6737253 | MS.gene24856:CDS |
| CACCGGTGATCCTTTAAGGC+TGG | 0.435269 | 8.2:+6737231 | MS.gene24856:CDS |
| CAGCAAGCACCAAGAACACC+AGG | 0.435403 | 8.2:-6737868 | None:intergenic |
| TGTGATTGTGATGAATCTTC+GGG | 0.436944 | 8.2:-6736716 | None:intergenic |
| GAGTTGTCCATTGTTGTTGT+TGG | 0.438490 | 8.2:-6736872 | None:intergenic |
| AAGGTGTGGTTGATACTAAA+GGG | 0.444687 | 8.2:+6737539 | MS.gene24856:CDS |
| TAAGAATTCACATTGGACTT+AGG | 0.445097 | 8.2:-6737460 | None:intergenic |
| AGGTCCAGTAAGACGGTTAT+GGG | 0.445279 | 8.2:+6737003 | MS.gene24856:CDS |
| GAGGTCCAGTAAGACGGTTA+TGG | 0.447310 | 8.2:+6737002 | MS.gene24856:CDS |
| TTTGATTAAACAAGAGTTTG+AGG | 0.451818 | 8.2:+6737375 | MS.gene24856:CDS |
| TTATGCCAAAGTTTATTAGT+TGG | 0.453461 | 8.2:+6737332 | MS.gene24856:CDS |
| CAAGGTGTGGTTGATACTAA+AGG | 0.464115 | 8.2:+6737538 | MS.gene24856:CDS |
| TCCCGGGCGGCAGCGCGTGG+CGG | 0.468360 | 8.2:+6737189 | MS.gene24856:CDS |
| GAGGATAGAGGTGAAGATTG+AGG | 0.471283 | 8.2:+6737840 | MS.gene24856:CDS |
| TCAGGCCAACTAATAAACTT+TGG | 0.476597 | 8.2:-6737337 | None:intergenic |
| CTGTTGCTGCTGTTCAAGCT+AGG | 0.480095 | 8.2:+6737992 | MS.gene24856:CDS |
| TCTGGGTTCCCTTTGATGGA+TGG | 0.480100 | 8.2:+6737685 | MS.gene24856:CDS |
| AGGCTGGTTTCAAAGAGGTT+CGG | 0.481630 | 8.2:+6737247 | MS.gene24856:CDS |
| GGTGGTCTTGTTTGCAGAAG+AGG | 0.482578 | 8.2:+6737821 | MS.gene24856:CDS |
| TTGATTAAACAAGAGTTTGA+GGG | 0.485947 | 8.2:+6737376 | MS.gene24856:CDS |
| ACCGCAACTTCTTCAGCAAT+GGG | 0.492992 | 8.2:+6736980 | MS.gene24856:CDS |
| ATCACAATCACAGTTACAAT+GGG | 0.511273 | 8.2:+6736727 | MS.gene24856:CDS |
| TGAAAGAACGTCCAAAAGAC+TGG | 0.511704 | 8.2:+6737026 | MS.gene24856:CDS |
| ACCAAAATTCCATCCATCAA+AGG | 0.513056 | 8.2:-6737694 | None:intergenic |
| TGGGAATAATCTTCAAAAGA+AGG | 0.515198 | 8.2:-6736641 | None:intergenic |
| GGATATTCAGAAGCTGTGTA+AGG | 0.523114 | 8.2:+6737774 | MS.gene24856:CDS |
| CTCTGTTACTGTTCAAGGTG+TGG | 0.523511 | 8.2:+6737525 | MS.gene24856:CDS |
| CCAAAATTCCATCCATCAAA+GGG | 0.523543 | 8.2:-6737693 | None:intergenic |
| TTGTTTGCAGAAGAGGATAG+AGG | 0.524424 | 8.2:+6737828 | MS.gene24856:CDS |
| CACCGCAACTTCTTCAGCAA+TGG | 0.525112 | 8.2:+6736979 | MS.gene24856:CDS |
| CATCTCCTGAACTCTTCCTC+CGG | 0.527345 | 8.2:-6737076 | None:intergenic |
| TTTGGAATGCCAAATGTTGG+TGG | 0.527866 | 8.2:+6737403 | MS.gene24856:CDS |
| TGAAATGAGAAATGAGAAGA+TGG | 0.532464 | 8.2:+6737909 | MS.gene24856:CDS |
| CATCACAATCACAGTTACAA+TGG | 0.541606 | 8.2:+6736726 | MS.gene24856:CDS |
| TATATCCACCTGTCATAAGC+TGG | 0.547796 | 8.2:+6737276 | MS.gene24856:CDS |
| GTTGTTGGTATTTGTTGTTG+TGG | 0.556247 | 8.2:-6736836 | None:intergenic |
| AAAAGTTCAAAATTCCATGC+AGG | 0.556616 | 8.2:-6737934 | None:intergenic |
| TGCTAAGGGATGCAATTCCC+GGG | 0.559385 | 8.2:+6737173 | MS.gene24856:CDS |
| CTCGAGAACCAGCTTATGAC+AGG | 0.564326 | 8.2:-6737284 | None:intergenic |
| AATTCCCGGGCGGCAGCGCG+TGG | 0.564819 | 8.2:+6737186 | MS.gene24856:CDS |
| ATGTATCAGAGAGCTATGAC+AGG | 0.567243 | 8.2:+6737631 | MS.gene24856:CDS |
| GATGAAATGGTTGCTGAGAA+TGG | 0.571501 | 8.2:+6737961 | MS.gene24856:CDS |
| CTTTAAGGCTGGTTTCAAAG+AGG | 0.577123 | 8.2:+6737242 | MS.gene24856:CDS |
| CTGTCATAAGCTGGTTCTCG+AGG | 0.578653 | 8.2:+6737285 | MS.gene24856:CDS |
| ACAGCTTGTGCGTCGCGACG+CGG | 0.580368 | 8.2:-6736950 | None:intergenic |
| ATGAGAAGATGGATCCTGCA+TGG | 0.580887 | 8.2:+6737920 | MS.gene24856:CDS |
| TGATCATCATTATAAGAACC+AGG | 0.582500 | 8.2:-6737589 | None:intergenic |
| TGTTGCTGCTGTTCAAGCTA+GGG | 0.584860 | 8.2:+6737993 | MS.gene24856:CDS |
| TCCCATTGCTGAAGAAGTTG+CGG | 0.584987 | 8.2:-6736981 | None:intergenic |
| GATGCGTTTGCAAAGGTGAA+AGG | 0.587098 | 8.2:+6737796 | MS.gene24856:CDS |
| ACAATCACCAACAACAACAA+TGG | 0.587762 | 8.2:+6736865 | MS.gene24856:CDS |
| ATACACATCAGAATTTGACT+TGG | 0.591529 | 8.2:+6737722 | MS.gene24856:CDS |
| AACCAGCCTTAAAGGATCAC+CGG | 0.593167 | 8.2:-6737233 | None:intergenic |
| TTATTGCATCGTGGTCGTGT+TGG | 0.605444 | 8.2:+6738033 | MS.gene24856:CDS |
| ATTGAAATAAGAATTCACAT+TGG | 0.606107 | 8.2:-6737467 | None:intergenic |
| AATAATCTTCAAAAGAAGGA+GGG | 0.606158 | 8.2:-6736637 | None:intergenic |
| CAATGGGAGGTCCAGTAAGA+CGG | 0.606401 | 8.2:+6736996 | MS.gene24856:CDS |
| GCACGCGTTTAATGAGAAAG+TGG | 0.606857 | 8.2:+6737750 | MS.gene24856:CDS |
| GTGAAGATTGAGGAGTTGCC+TGG | 0.615794 | 8.2:+6737850 | MS.gene24856:CDS |
| GAATAATCTTCAAAAGAAGG+AGG | 0.616959 | 8.2:-6736638 | None:intergenic |
| GCTCATGATTTATTGCATCG+TGG | 0.641202 | 8.2:+6738024 | MS.gene24856:CDS |
| TGCAATTATTGGAATATGTG+TGG | 0.641263 | 8.2:-6737437 | None:intergenic |
| TGTATCTGGAGACTTGCCAC+CGG | 0.646276 | 8.2:+6737214 | MS.gene24856:CDS |
| CGTTTGCAAAGGTGAAAGGA+AGG | 0.647177 | 8.2:+6737800 | MS.gene24856:CDS |
| CATTGCTGAAGAAGTTGCGG+TGG | 0.654316 | 8.2:-6736978 | None:intergenic |
| TCAATAAGAGGCAGACTCAG+AGG | 0.654570 | 8.2:+6737485 | MS.gene24856:CDS |
| CGCGTTTAATGAGAAAGTGG+AGG | 0.659194 | 8.2:+6737753 | MS.gene24856:CDS |
| GAGAACCAGCTTATGACAGG+TGG | 0.660646 | 8.2:-6737281 | None:intergenic |
| GTGTAAGGATGCGTTTGCAA+AGG | 0.672985 | 8.2:+6737789 | MS.gene24856:CDS |
| GATCATCATTATAAGAACCA+GGG | 0.676277 | 8.2:-6737588 | None:intergenic |
| TTGCAAAGGTGAAAGGAAGG+TGG | 0.690826 | 8.2:+6737803 | MS.gene24856:CDS |
| GCAACTTCTTCAGCAATGGG+AGG | 0.707088 | 8.2:+6736983 | MS.gene24856:CDS |
| AAGAACGTCCAAAAGACTGG+TGG | 0.708336 | 8.2:+6737029 | MS.gene24856:CDS |
| CAGCCTTAAAGGATCACCGG+TGG | 0.709341 | 8.2:-6737230 | None:intergenic |
| TGTATCAGAGAGCTATGACA+GGG | 0.718997 | 8.2:+6737632 | MS.gene24856:CDS |
| CAGCAGTCCAGAATTTCCGG+AGG | 0.724581 | 8.2:+6737060 | MS.gene24856:CDS |
| TAAGGGATGCAATTCCCGGG+CGG | 0.733518 | 8.2:+6737176 | MS.gene24856:CDS |
| GTGATTGTGATGAATCTTCG+GGG | 0.764964 | 8.2:-6736715 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAATAAGAATTCACAT+TGG | - | chr8.2:6737470-6737489 | None:intergenic | 20.0% |
| !!! | AAATTCATCTTATTTTCATC+AGG | - | chr8.2:6737358-6737377 | None:intergenic | 20.0% |
| !!! | TGAATTCTTATTTCAATAAG+AGG | + | chr8.2:6737473-6737492 | MS.gene24856:CDS | 20.0% |
| ! | AAAGAAAAACACTTTGCTAA+GGG | + | chr8.2:6737159-6737178 | MS.gene24856:CDS | 25.0% |
| ! | AATAATCTTCAAAAGAAGGA+GGG | - | chr8.2:6736640-6736659 | None:intergenic | 25.0% |
| ! | TTATGCCAAAGTTTATTAGT+TGG | + | chr8.2:6737332-6737351 | MS.gene24856:CDS | 25.0% |
| ! | TTGATTAAACAAGAGTTTGA+GGG | + | chr8.2:6737376-6737395 | MS.gene24856:CDS | 25.0% |
| ! | TTTGATTAAACAAGAGTTTG+AGG | + | chr8.2:6737375-6737394 | MS.gene24856:CDS | 25.0% |
| !! | ATTTTCACTGATGTTTTTCT+TGG | + | chr8.2:6737562-6737581 | MS.gene24856:CDS | 25.0% |
| !! | TTATAATGATGATCAGGTTT+TGG | + | chr8.2:6737597-6737616 | MS.gene24856:CDS | 25.0% |
| !!! | TGAACTTTTTGATGATGAAA+TGG | + | chr8.2:6737948-6737967 | MS.gene24856:CDS | 25.0% |
| AAAAGTTCAAAATTCCATGC+AGG | - | chr8.2:6737937-6737956 | None:intergenic | 30.0% | |
| AGGGAATTTGAAAGATTCTT+GGG | + | chr8.2:6737651-6737670 | MS.gene24856:CDS | 30.0% | |
| ATACACATCAGAATTTGACT+TGG | + | chr8.2:6737722-6737741 | MS.gene24856:CDS | 30.0% | |
| ATCAAAATCAATCTCAAAGC+TGG | - | chr8.2:6736897-6736916 | None:intergenic | 30.0% | |
| ATCACAATCACAGTTACAAT+GGG | + | chr8.2:6736727-6736746 | MS.gene24856:CDS | 30.0% | |
| CAAAGAAAAACACTTTGCTA+AGG | + | chr8.2:6737158-6737177 | MS.gene24856:CDS | 30.0% | |
| GAATAATCTTCAAAAGAAGG+AGG | - | chr8.2:6736641-6736660 | None:intergenic | 30.0% | |
| GATCATCATTATAAGAACCA+GGG | - | chr8.2:6737591-6737610 | None:intergenic | 30.0% | |
| GTCAAATTCTGATGTGTATA+AGG | - | chr8.2:6737721-6737740 | None:intergenic | 30.0% | |
| TAAGAATTCACATTGGACTT+AGG | - | chr8.2:6737463-6737482 | None:intergenic | 30.0% | |
| TGAAATGAGAAATGAGAAGA+TGG | + | chr8.2:6737909-6737928 | MS.gene24856:CDS | 30.0% | |
| TGATCATCATTATAAGAACC+AGG | - | chr8.2:6737592-6737611 | None:intergenic | 30.0% | |
| TGCAATTATTGGAATATGTG+TGG | - | chr8.2:6737440-6737459 | None:intergenic | 30.0% | |
| TGGGAATAATCTTCAAAAGA+AGG | - | chr8.2:6736644-6736663 | None:intergenic | 30.0% | |
| TGGTTCTTATAATGATGATC+AGG | + | chr8.2:6737591-6737610 | MS.gene24856:CDS | 30.0% | |
| TTCCATTTCAGGGAAAAAAT+GGG | - | chr8.2:6736663-6736682 | None:intergenic | 30.0% | |
| !! | CAAATCGAATGAGAGTATTA+AGG | - | chr8.2:6736811-6736830 | None:intergenic | 30.0% |
| !! | CTTTTCTTTGGGTTTACATT+TGG | - | chr8.2:6736689-6736708 | None:intergenic | 30.0% |
| ACAATCACCAACAACAACAA+TGG | + | chr8.2:6736865-6736884 | MS.gene24856:CDS | 35.0% | |
| ACATTTGGTTGTTCCATTTC+AGG | - | chr8.2:6736674-6736693 | None:intergenic | 35.0% | |
| ACCAAAATTCCATCCATCAA+AGG | - | chr8.2:6737697-6737716 | None:intergenic | 35.0% | |
| CAGGGAATTTGAAAGATTCT+TGG | + | chr8.2:6737650-6737669 | MS.gene24856:CDS | 35.0% | |
| CATCACAATCACAGTTACAA+TGG | + | chr8.2:6736726-6736745 | MS.gene24856:CDS | 35.0% | |
| CATTTGGTTGTTCCATTTCA+GGG | - | chr8.2:6736673-6736692 | None:intergenic | 35.0% | |
| CCAAAATTCCATCCATCAAA+GGG | - | chr8.2:6737696-6737715 | None:intergenic | 35.0% | |
| CTGTGATTGTGATGAATCTT+CGG | - | chr8.2:6736720-6736739 | None:intergenic | 35.0% | |
| GTTCCATTTCAGGGAAAAAA+TGG | - | chr8.2:6736664-6736683 | None:intergenic | 35.0% | |
| TACATTGAACCACCAACATT+TGG | - | chr8.2:6737415-6737434 | None:intergenic | 35.0% | |
| TCAGGCCAACTAATAAACTT+TGG | - | chr8.2:6737340-6737359 | None:intergenic | 35.0% | |
| TGTGATTGTGATGAATCTTC+GGG | - | chr8.2:6736719-6736738 | None:intergenic | 35.0% | |
| TTGGACTTAGGTGCAATTAT+TGG | - | chr8.2:6737451-6737470 | None:intergenic | 35.0% | |
| ! | AAACAGCTGATTCAAGTTCT+TGG | - | chr8.2:6737138-6737157 | None:intergenic | 35.0% |
| ! | AAGGTGTGGTTGATACTAAA+GGG | + | chr8.2:6737539-6737558 | MS.gene24856:CDS | 35.0% |
| ! | ATTGCAGTTGTTGTTGTTGT+TGG | - | chr8.2:6736765-6736784 | None:intergenic | 35.0% |
| ! | TAACAGAGTATGCAGTTTTC+TGG | - | chr8.2:6737513-6737532 | None:intergenic | 35.0% |
| ! | TTGAAAGATTCTTGGGTTGT+TGG | + | chr8.2:6737658-6737677 | MS.gene24856:CDS | 35.0% |
| ! | TTGCAGTTGTTGTTGTTGTT+GGG | - | chr8.2:6736764-6736783 | None:intergenic | 35.0% |
| !! | GTTGTTGGTATTTGTTGTTG+TGG | - | chr8.2:6736839-6736858 | None:intergenic | 35.0% |
| !!! | CTTTTTGGAATGCCAAATGT+TGG | + | chr8.2:6737400-6737419 | MS.gene24856:CDS | 35.0% |
| !!! | TTCCCATTTTTTCCCTGAAA+TGG | + | chr8.2:6736658-6736677 | MS.gene24856:CDS | 35.0% |
| AAATTCTGGGTTCCCTTTGA+TGG | + | chr8.2:6737681-6737700 | MS.gene24856:CDS | 40.0% | |
| AAGAGTTCAGGAGATGTTTC+CGG | + | chr8.2:6737083-6737102 | MS.gene24856:CDS | 40.0% | |
| ATGTATCAGAGAGCTATGAC+AGG | + | chr8.2:6737631-6737650 | MS.gene24856:CDS | 40.0% | |
| GATGAAATGGTTGCTGAGAA+TGG | + | chr8.2:6737961-6737980 | MS.gene24856:CDS | 40.0% | |
| GCATACTCTGTTACTGTTCA+AGG | + | chr8.2:6737520-6737539 | MS.gene24856:CDS | 40.0% | |
| GCTCATGATTTATTGCATCG+TGG | + | chr8.2:6738024-6738043 | MS.gene24856:CDS | 40.0% | |
| GGATATTCAGAAGCTGTGTA+AGG | + | chr8.2:6737774-6737793 | MS.gene24856:CDS | 40.0% | |
| GTGATTGTGATGAATCTTCG+GGG | - | chr8.2:6736718-6736737 | None:intergenic | 40.0% | |
| TATATCCACCTGTCATAAGC+TGG | + | chr8.2:6737276-6737295 | MS.gene24856:CDS | 40.0% | |
| TGAAAGAACGTCCAAAAGAC+TGG | + | chr8.2:6737026-6737045 | MS.gene24856:CDS | 40.0% | |
| TGTATCAGAGAGCTATGACA+GGG | + | chr8.2:6737632-6737651 | MS.gene24856:CDS | 40.0% | |
| TTGTTTGCAGAAGAGGATAG+AGG | + | chr8.2:6737828-6737847 | MS.gene24856:CDS | 40.0% | |
| ! | CAAGAGTTTGAGGGTCTTTT+TGG | + | chr8.2:6737385-6737404 | MS.gene24856:CDS | 40.0% |
| ! | CAAGGTGTGGTTGATACTAA+AGG | + | chr8.2:6737538-6737557 | MS.gene24856:CDS | 40.0% |
| ! | CGGGGTGATTTCTTTTCTTT+GGG | - | chr8.2:6736700-6736719 | None:intergenic | 40.0% |
| ! | CTTGGGTTGTTGGAAATTCT+GGG | + | chr8.2:6737668-6737687 | MS.gene24856:CDS | 40.0% |
| ! | GAGTTGTCCATTGTTGTTGT+TGG | - | chr8.2:6736875-6736894 | None:intergenic | 40.0% |
| ! | GATGTTTTTCTTGGTTACCC+TGG | + | chr8.2:6737571-6737590 | MS.gene24856:CDS | 40.0% |
| ! | GGTGATTGTTGTTGTGTTGT+TGG | - | chr8.2:6736854-6736873 | None:intergenic | 40.0% |
| ! | GTTTCAAAGAGGTTCGGTTT+GGG | + | chr8.2:6737253-6737272 | MS.gene24856:CDS | 40.0% |
| ! | TCGGGGTGATTTCTTTTCTT+TGG | - | chr8.2:6736701-6736720 | None:intergenic | 40.0% |
| ! | TCTTGGGTTGTTGGAAATTC+TGG | + | chr8.2:6737667-6737686 | MS.gene24856:CDS | 40.0% |
| ! | TGCAGTTGTTGTTGTTGTTG+GGG | - | chr8.2:6736763-6736782 | None:intergenic | 40.0% |
| ! | TTTGGAATGCCAAATGTTGG+TGG | + | chr8.2:6737403-6737422 | MS.gene24856:CDS | 40.0% |
| !! | CCCTTTGATGGATGGAATTT+TGG | + | chr8.2:6737693-6737712 | MS.gene24856:CDS | 40.0% |
| !! | CTCTTTGAAACCAGCCTTAA+AGG | - | chr8.2:6737244-6737263 | None:intergenic | 40.0% |
| !! | CTTTAAGGCTGGTTTCAAAG+AGG | + | chr8.2:6737242-6737261 | MS.gene24856:CDS | 40.0% |
| AACCAGCCTTAAAGGATCAC+CGG | - | chr8.2:6737236-6737255 | None:intergenic | 45.0% | |
| AACTCTTCCTCCGGAAATTC+TGG | - | chr8.2:6737070-6737089 | None:intergenic | 45.0% | |
| AAGAACGTCCAAAAGACTGG+TGG | + | chr8.2:6737029-6737048 | MS.gene24856:CDS | 45.0% | |
| AATTTCCGGAGGAAGAGTTC+AGG | + | chr8.2:6737071-6737090 | MS.gene24856:CDS | 45.0% | |
| ACCGCAACTTCTTCAGCAAT+GGG | + | chr8.2:6736980-6736999 | MS.gene24856:CDS | 45.0% | |
| AGGTCCAGTAAGACGGTTAT+GGG | + | chr8.2:6737003-6737022 | MS.gene24856:CDS | 45.0% | |
| ATGAGAAGATGGATCCTGCA+TGG | + | chr8.2:6737920-6737939 | MS.gene24856:CDS | 45.0% | |
| ATGCAGCAGTCCAGAATTTC+CGG | + | chr8.2:6737057-6737076 | MS.gene24856:CDS | 45.0% | |
| CGCGTTTAATGAGAAAGTGG+AGG | + | chr8.2:6737753-6737772 | MS.gene24856:CDS | 45.0% | |
| CGTTTGCAAAGGTGAAAGGA+AGG | + | chr8.2:6737800-6737819 | MS.gene24856:CDS | 45.0% | |
| CTCTGTTACTGTTCAAGGTG+TGG | + | chr8.2:6737525-6737544 | MS.gene24856:CDS | 45.0% | |
| GAGGATAGAGGTGAAGATTG+AGG | + | chr8.2:6737840-6737859 | MS.gene24856:CDS | 45.0% | |
| GATGCGTTTGCAAAGGTGAA+AGG | + | chr8.2:6737796-6737815 | MS.gene24856:CDS | 45.0% | |
| GCACGCGTTTAATGAGAAAG+TGG | + | chr8.2:6737750-6737769 | MS.gene24856:CDS | 45.0% | |
| GTGTAAGGATGCGTTTGCAA+AGG | + | chr8.2:6737789-6737808 | MS.gene24856:CDS | 45.0% | |
| TCAATAAGAGGCAGACTCAG+AGG | + | chr8.2:6737485-6737504 | MS.gene24856:CDS | 45.0% | |
| TCCCATTGCTGAAGAAGTTG+CGG | - | chr8.2:6736984-6737003 | None:intergenic | 45.0% | |
| TGTTGCTGCTGTTCAAGCTA+GGG | + | chr8.2:6737993-6738012 | MS.gene24856:CDS | 45.0% | |
| TTATTGCATCGTGGTCGTGT+TGG | + | chr8.2:6738033-6738052 | MS.gene24856:CDS | 45.0% | |
| TTCACCCATAACCGTCTTAC+TGG | - | chr8.2:6737010-6737029 | None:intergenic | 45.0% | |
| TTGCAAAGGTGAAAGGAAGG+TGG | + | chr8.2:6737803-6737822 | MS.gene24856:CDS | 45.0% | |
| TTGCTAAGGGATGCAATTCC+CGG | + | chr8.2:6737172-6737191 | MS.gene24856:CDS | 45.0% | |
| ! | CATTTCTGCCACCAGTCTTT+TGG | - | chr8.2:6737040-6737059 | None:intergenic | 45.0% |
| ! | GGTTTCAAAGAGGTTCGGTT+TGG | + | chr8.2:6737252-6737271 | MS.gene24856:CDS | 45.0% |
| !! | AGGCTGGTTTCAAAGAGGTT+CGG | + | chr8.2:6737247-6737266 | MS.gene24856:CDS | 45.0% |
| CAATGGGAGGTCCAGTAAGA+CGG | + | chr8.2:6736996-6737015 | MS.gene24856:CDS | 50.0% | |
| CACCGCAACTTCTTCAGCAA+TGG | + | chr8.2:6736979-6736998 | MS.gene24856:CDS | 50.0% | |
| CATCTCCTGAACTCTTCCTC+CGG | - | chr8.2:6737079-6737098 | None:intergenic | 50.0% | |
| CATTGCTGAAGAAGTTGCGG+TGG | - | chr8.2:6736981-6737000 | None:intergenic | 50.0% | |
| CTCGAGAACCAGCTTATGAC+AGG | - | chr8.2:6737287-6737306 | None:intergenic | 50.0% | |
| CTGTTGCTGCTGTTCAAGCT+AGG | + | chr8.2:6737992-6738011 | MS.gene24856:CDS | 50.0% | |
| GAGAACCAGCTTATGACAGG+TGG | - | chr8.2:6737284-6737303 | None:intergenic | 50.0% | |
| GAGGTCCAGTAAGACGGTTA+TGG | + | chr8.2:6737002-6737021 | MS.gene24856:CDS | 50.0% | |
| GCAACTTCTTCAGCAATGGG+AGG | + | chr8.2:6736983-6737002 | MS.gene24856:CDS | 50.0% | |
| GTGAAGATTGAGGAGTTGCC+TGG | + | chr8.2:6737850-6737869 | MS.gene24856:CDS | 50.0% | |
| TCTGGGTTCCCTTTGATGGA+TGG | + | chr8.2:6737685-6737704 | MS.gene24856:CDS | 50.0% | |
| TGCTAAGGGATGCAATTCCC+GGG | + | chr8.2:6737173-6737192 | MS.gene24856:CDS | 50.0% | |
| TGTATCTGGAGACTTGCCAC+CGG | + | chr8.2:6737214-6737233 | MS.gene24856:CDS | 50.0% | |
| TTGCCACCGGTGATCCTTTA+AGG | + | chr8.2:6737227-6737246 | MS.gene24856:CDS | 50.0% | |
| ! | CGAACGTTGCTTTGCTCATC+CGG | - | chr8.2:6737105-6737124 | None:intergenic | 50.0% |
| ! | CTGTCATAAGCTGGTTCTCG+AGG | + | chr8.2:6737285-6737304 | MS.gene24856:CDS | 50.0% |
| !! | GGTGGTCTTGTTTGCAGAAG+AGG | + | chr8.2:6737821-6737840 | MS.gene24856:CDS | 50.0% |
| CAGCAAGCACCAAGAACACC+AGG | - | chr8.2:6737871-6737890 | None:intergenic | 55.0% | |
| CAGCAGTCCAGAATTTCCGG+AGG | + | chr8.2:6737060-6737079 | MS.gene24856:CDS | 55.0% | |
| CAGCCTTAAAGGATCACCGG+TGG | - | chr8.2:6737233-6737252 | None:intergenic | 55.0% | |
| GAGGAGTTGCCTGGTGTTCT+TGG | + | chr8.2:6737859-6737878 | MS.gene24856:CDS | 55.0% | |
| TAAGGGATGCAATTCCCGGG+CGG | + | chr8.2:6737176-6737195 | MS.gene24856:CDS | 55.0% | |
| !! | CACCGGTGATCCTTTAAGGC+TGG | + | chr8.2:6737231-6737250 | MS.gene24856:CDS | 55.0% |
| AGCGCGTGGCGGTTTGTATC+TGG | + | chr8.2:6737200-6737219 | MS.gene24856:CDS | 60.0% | |
| ACAGCTTGTGCGTCGCGACG+CGG | - | chr8.2:6736953-6736972 | None:intergenic | 65.0% | |
| AATTCCCGGGCGGCAGCGCG+TGG | + | chr8.2:6737186-6737205 | MS.gene24856:CDS | 75.0% | |
| ! | AACCGCCACGCGCTGCCGCC+CGG | - | chr8.2:6737194-6737213 | None:intergenic | 80.0% |
| ! | ACCGCCACGCGCTGCCGCCC+GGG | - | chr8.2:6737193-6737212 | None:intergenic | 85.0% |
| ! | TCCCGGGCGGCAGCGCGTGG+CGG | + | chr8.2:6737189-6737208 | MS.gene24856:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6736614 | 6738068 | 6736614 | ID=MS.gene24856 |
| chr8.2 | mRNA | 6736614 | 6738068 | 6736614 | ID=MS.gene24856.t1;Parent=MS.gene24856 |
| chr8.2 | exon | 6736614 | 6738068 | 6736614 | ID=MS.gene24856.t1.exon1;Parent=MS.gene24856.t1 |
| chr8.2 | CDS | 6736614 | 6738068 | 6736614 | ID=cds.MS.gene24856.t1;Parent=MS.gene24856.t1 |
| Gene Sequence |
| Protein sequence |
