Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052349.t1 | XP_003607377.1 | 92.1 | 469 | 35 | 1 | 38 | 506 | 35 | 501 | 1.30E-201 | 712.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052349.t1 | G7JRP1 | 92.1 | 469 | 35 | 1 | 38 | 506 | 35 | 501 | 9.3e-202 | 712.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052349 | MS.gene071422 | 0.80292 | 4.46E-49 | -1.69E-46 |
| MS.gene052349 | MS.gene073059 | 0.801127 | 1.04E-48 | -1.69E-46 |
| MS.gene052349 | MS.gene75915 | 0.803044 | 4.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052349.t1 | MTR_4g077160 | 93.802 | 484 | 28 | 1 | 23 | 506 | 20 | 501 | 0.0 | 865 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052349.t1 | AT1G51405 | 41.026 | 507 | 240 | 13 | 4 | 483 | 7 | 481 | 1.48e-93 | 293 |
| MS.gene052349.t1 | AT1G51405 | 44.845 | 388 | 176 | 8 | 4 | 366 | 7 | 381 | 1.31e-83 | 264 |
Find 115 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACCATTGGAACATTTAT+TGG | 0.136920 | 4.4:-33462926 | None:intergenic |
| TGCAGGCTTCACGAGATTTC+TGG | 0.154752 | 4.4:+33464883 | MS.gene052349:CDS |
| GAAGAATGTTGATAGGGTTT+TGG | 0.243640 | 4.4:+33463750 | MS.gene052349:CDS |
| GGAGATTCTGAGAAGGAAAA+TGG | 0.295996 | 4.4:+33464288 | MS.gene052349:CDS |
| ACCTAGCATCTCCTGCATTT+GGG | 0.322418 | 4.4:-33464835 | None:intergenic |
| CGAGGAAAGTGTAGGATTCT+TGG | 0.351068 | 4.4:-33462797 | None:intergenic |
| GACCTAGCATCTCCTGCATT+TGG | 0.353377 | 4.4:-33464836 | None:intergenic |
| AGGTGGATGGTGGTGCCATT+TGG | 0.357482 | 4.4:-33462762 | None:intergenic |
| GTGAAGGGAAGAATGTTGAT+AGG | 0.361695 | 4.4:+33463743 | MS.gene052349:CDS |
| TCTTGGAACGGCATTCGCTT+TGG | 0.396493 | 4.4:-33465398 | None:intergenic |
| TGTGAAGGGAACCTGTGTTC+AGG | 0.397994 | 4.4:+33464750 | MS.gene052349:CDS |
| AGAGATAGCAGTTAAGAAGT+TGG | 0.398549 | 4.4:+33463081 | MS.gene052349:CDS |
| GAATGAACAAAATGTAGTTA+AGG | 0.398858 | 4.4:+33465205 | MS.gene052349:CDS |
| GGGGATATTATTAGAGAGAA+TGG | 0.402963 | 4.4:+33464324 | MS.gene052349:CDS |
| ATTCTTGGAGTTGGAGGAGG+AGG | 0.414343 | 4.4:-33462782 | None:intergenic |
| CTTGGAGTTGGAGGAGGAGG+TGG | 0.418774 | 4.4:-33462779 | None:intergenic |
| TACTTGAAATTCAACTCTCT+TGG | 0.421214 | 4.4:-33464401 | None:intergenic |
| ACGAGTTGTTTCCAATGTCT+TGG | 0.422000 | 4.4:-33465415 | None:intergenic |
| AACATGTTAGGGACATTGTT+TGG | 0.423072 | 4.4:+33462875 | MS.gene052349:CDS |
| AATGAACAAAATGTAGTTAA+GGG | 0.423538 | 4.4:+33465206 | MS.gene052349:CDS |
| CTCCGGGGAGCGGAGGAAGA+TGG | 0.425178 | 4.4:-33462839 | None:intergenic |
| GTTACTGTTGAGGTCCCTCC+GGG | 0.427432 | 4.4:-33462855 | None:intergenic |
| GACCTCAACAGTAACATGTT+AGG | 0.429213 | 4.4:+33462863 | MS.gene052349:CDS |
| TGAATTTCAAGTACCTCATC+AGG | 0.430682 | 4.4:+33464411 | MS.gene052349:CDS |
| TGTAGGATTCTTGGAGTTGG+AGG | 0.434712 | 4.4:-33462788 | None:intergenic |
| GTTGTTATTGAGAGAGGTGA+TGG | 0.436814 | 4.4:+33462980 | MS.gene052349:CDS |
| ATCTTCCTCCGCTCCCCGGA+GGG | 0.438821 | 4.4:+33462841 | MS.gene052349:CDS |
| TTTGAGGGAGTTTGAAGAGA+TGG | 0.450041 | 4.4:+33463933 | MS.gene052349:CDS |
| AGGATTCTTGGAGTTGGAGG+AGG | 0.459443 | 4.4:-33462785 | None:intergenic |
| ACATTTATTGGAGCTTCAGC+AGG | 0.459760 | 4.4:-33462914 | None:intergenic |
| GAGAGGTGATGGATCGTTGT+TGG | 0.460974 | 4.4:+33462991 | MS.gene052349:CDS |
| TCCGGGGAGCGGAGGAAGAT+GGG | 0.463847 | 4.4:-33462838 | None:intergenic |
| GACTATTGTAAGAAGAATAG+TGG | 0.465343 | 4.4:+33464782 | MS.gene052349:CDS |
| TTGGAGGAGGAGGTGGATGG+TGG | 0.470809 | 4.4:-33462772 | None:intergenic |
| TCTCAGCAGTTGAAGAAAGA+TGG | 0.473697 | 4.4:-33465487 | None:intergenic |
| TCCCATCTTCCTCCGCTCCC+CGG | 0.474058 | 4.4:+33462837 | MS.gene052349:CDS |
| TTCAAAATCAACACAGAGCA+TGG | 0.479121 | 4.4:-33465174 | None:intergenic |
| CATCAGAAGGGATATATTTG+AGG | 0.484387 | 4.4:+33463917 | MS.gene052349:CDS |
| GTTGAGGTCCCTCCGGGGAG+CGG | 0.489811 | 4.4:-33462849 | None:intergenic |
| ACCTCAACAGTAACATGTTA+GGG | 0.497942 | 4.4:+33462864 | MS.gene052349:CDS |
| AAAATGGAGGGATTGTCAAA+GGG | 0.498376 | 4.4:+33464304 | MS.gene052349:CDS |
| GAAATGTCCATCGGTTCCAT+TGG | 0.499255 | 4.4:+33465232 | MS.gene052349:CDS |
| GATAATAGTGTTCTTGCAAG+TGG | 0.499315 | 4.4:+33463994 | MS.gene052349:CDS |
| CGTTGTTGGAGGAAGAGAAG+TGG | 0.501323 | 4.4:+33463005 | MS.gene052349:CDS |
| AGGTGATGGATCGTTGTTGG+AGG | 0.501863 | 4.4:+33462994 | MS.gene052349:CDS |
| AAGTGTAGGATTCTTGGAGT+TGG | 0.503126 | 4.4:-33462791 | None:intergenic |
| GGAAAGGACTCGTTCAAAGA+TGG | 0.505693 | 4.4:+33463102 | MS.gene052349:CDS |
| TGAAGGGAAGAATGTTGATA+GGG | 0.506304 | 4.4:+33463744 | MS.gene052349:CDS |
| TGTTACTGTTGAGGTCCCTC+CGG | 0.508567 | 4.4:-33462856 | None:intergenic |
| TTGTTGACGAGGCAGCAAAA+TGG | 0.510915 | 4.4:+33465440 | MS.gene052349:CDS |
| GGATCGTTGTGAAGAGAGGA+GGG | 0.513458 | 4.4:+33462952 | MS.gene052349:CDS |
| GGAAGAGATGGAAGAACTGC+AGG | 0.514793 | 4.4:+33464866 | MS.gene052349:CDS |
| AAGAAAGATGGCAATGCAAA+GGG | 0.516461 | 4.4:-33465475 | None:intergenic |
| AGAACAATGGTCCCAAATGC+AGG | 0.519186 | 4.4:+33464824 | MS.gene052349:CDS |
| GAGAGAGTTGTTATTGAGAG+AGG | 0.525273 | 4.4:+33462974 | MS.gene052349:CDS |
| GAGTTGGAGGAGGAGGTGGA+TGG | 0.529094 | 4.4:-33462775 | None:intergenic |
| AGGTCAGGTGAGGGAAGAGA+TGG | 0.530355 | 4.4:+33464854 | MS.gene052349:CDS |
| AAGTTTCGGTTCTGCAGAGA+CGG | 0.530765 | 4.4:+33463875 | MS.gene052349:CDS |
| GAAAATGGAGGGATTGTCAA+AGG | 0.533587 | 4.4:+33464303 | MS.gene052349:CDS |
| AACTCTTTCTGTGTATCCAA+TGG | 0.534032 | 4.4:-33465248 | None:intergenic |
| TATCATCAAGAAAATCCAAA+TGG | 0.534495 | 4.4:+33462747 | MS.gene052349:CDS |
| AAATGTTCCAATGGTGATGT+TGG | 0.536540 | 4.4:+33462931 | MS.gene052349:CDS |
| CAACGATCCAACATCACCAT+TGG | 0.537506 | 4.4:-33462938 | None:intergenic |
| GAGGTCCCTCCGGGGAGCGG+AGG | 0.537807 | 4.4:-33462846 | None:intergenic |
| CGAATGCCGTTCCAAGACAT+TGG | 0.539282 | 4.4:+33465404 | MS.gene052349:CDS |
| GATATTATTAGAGAGAATGG+AGG | 0.539583 | 4.4:+33464327 | MS.gene052349:CDS |
| CTTTCACATAGGTGCAAGAG+TGG | 0.542479 | 4.4:+33465096 | MS.gene052349:intron |
| CAGAGACGGCTCGAGAAGAT+CGG | 0.543380 | 4.4:+33463889 | MS.gene052349:CDS |
| ATCAGAAGGGATATATTTGA+GGG | 0.543921 | 4.4:+33463918 | MS.gene052349:CDS |
| TGGATCGTTGTGAAGAGAGG+AGG | 0.548525 | 4.4:+33462951 | MS.gene052349:CDS |
| GGAAGAATAAAGATTTGTGA+AGG | 0.550668 | 4.4:+33463727 | MS.gene052349:CDS |
| AATGCAGGAGATGCTAGGTC+AGG | 0.555822 | 4.4:+33464839 | MS.gene052349:CDS |
| ACTTTCCTCGCCGTCCTCGT+CGG | 0.558544 | 4.4:+33462810 | MS.gene052349:CDS |
| CTCAAATATATCCCTTCTGA+TGG | 0.560000 | 4.4:-33463916 | None:intergenic |
| TTGTTTCCAATGTCTTGGAA+CGG | 0.560899 | 4.4:-33465410 | None:intergenic |
| AAATGGAGGGATTGTCAAAG+GGG | 0.562848 | 4.4:+33464305 | MS.gene052349:CDS |
| TAGCAGTTAAGAAGTTGGAA+AGG | 0.569875 | 4.4:+33463086 | MS.gene052349:CDS |
| AGCTCCAATAAATGTTCCAA+TGG | 0.574520 | 4.4:+33462922 | MS.gene052349:CDS |
| AATAGTAGTTTGCAGCTCAA+AGG | 0.575630 | 4.4:+33465280 | MS.gene052349:CDS |
| GAAGAAAGATGGCAATGCAA+AGG | 0.576278 | 4.4:-33465476 | None:intergenic |
| TCCCTAACATGTTACTGTTG+AGG | 0.580614 | 4.4:-33462865 | None:intergenic |
| CATCTTCCTCCGCTCCCCGG+AGG | 0.583736 | 4.4:+33462840 | MS.gene052349:CDS |
| ATGGGACTCTCCGACGAGGA+CGG | 0.584150 | 4.4:-33462820 | None:intergenic |
| AAGATCGGAGGACCATCAGA+AGG | 0.585962 | 4.4:+33463904 | MS.gene052349:CDS |
| AAAACACATGCTGCTAGAGG+TGG | 0.586512 | 4.4:+33465365 | MS.gene052349:CDS |
| TGTGTATCCAATGGAACCGA+TGG | 0.591976 | 4.4:-33465239 | None:intergenic |
| GATTCTGAGAAGGAAAATGG+AGG | 0.593121 | 4.4:+33464291 | MS.gene052349:CDS |
| ATGAACAAAATGTAGTTAAG+GGG | 0.598650 | 4.4:+33465207 | MS.gene052349:CDS |
| ATTCTGAGAAGGAAAATGGA+GGG | 0.600555 | 4.4:+33464292 | MS.gene052349:CDS |
| TGTTGGATCGTTGTGAAGAG+AGG | 0.601931 | 4.4:+33462948 | MS.gene052349:CDS |
| AATCAAGAATATACCTGATG+AGG | 0.602317 | 4.4:-33464424 | None:intergenic |
| GAAGAATAAAGATTTGTGAA+GGG | 0.602622 | 4.4:+33463728 | MS.gene052349:CDS |
| GATTTGAGAATCAGAATGCA+AGG | 0.608352 | 4.4:-33464916 | None:intergenic |
| TCTTGCAATGTCCTGAACAC+AGG | 0.609133 | 4.4:-33464761 | None:intergenic |
| GGAGATGCTAGGTCAGGTGA+GGG | 0.610800 | 4.4:+33464845 | MS.gene052349:CDS |
| TGAAGCAGAACTACTAGCAG+TGG | 0.613311 | 4.4:-33464374 | None:intergenic |
| TGCAGGTGGAGATTCTGAGA+AGG | 0.623768 | 4.4:+33464281 | MS.gene052349:intron |
| GGACTCGTTCAAAGATGGAA+CGG | 0.624780 | 4.4:+33463107 | MS.gene052349:CDS |
| TCCCAAATGCAGGAGATGCT+AGG | 0.625805 | 4.4:+33464834 | MS.gene052349:CDS |
| AAGTGAAACTAACAGAAACA+AGG | 0.628076 | 4.4:-33463153 | None:intergenic |
| AGGAGATGCTAGGTCAGGTG+AGG | 0.633324 | 4.4:+33464844 | MS.gene052349:CDS |
| TGAGTGTAACTTGTTGAGGA+TGG | 0.633977 | 4.4:+33463054 | MS.gene052349:CDS |
| GAGCTGAGTGTAACTTGTTG+AGG | 0.636916 | 4.4:+33463050 | MS.gene052349:CDS |
| GAGGACGGCGAGGAAAGTGT+AGG | 0.654317 | 4.4:-33462805 | None:intergenic |
| TAAGGGGACGAAATGTCCAT+CGG | 0.657673 | 4.4:+33465223 | MS.gene052349:CDS |
| AGATCGGAGGACCATCAGAA+GGG | 0.658949 | 4.4:+33463905 | MS.gene052349:CDS |
| ACTCTCCGACGAGGACGGCG+AGG | 0.662623 | 4.4:-33462815 | None:intergenic |
| AGACGGCTCGAGAAGATCGG+AGG | 0.667780 | 4.4:+33463892 | MS.gene052349:CDS |
| AGTGAAACTAACAGAAACAA+GGG | 0.667912 | 4.4:-33463152 | None:intergenic |
| ACAACTCGTCATTGTTGACG+AGG | 0.679111 | 4.4:+33465429 | MS.gene052349:CDS |
| AGAGAAGTGGAAGTTTCAAG+CGG | 0.681462 | 4.4:+33463018 | MS.gene052349:CDS |
| GAAGATGGGACTCTCCGACG+AGG | 0.714622 | 4.4:-33462824 | None:intergenic |
| AGAAAACAGAAAACACAGTG+AGG | 0.720156 | 4.4:+33465322 | MS.gene052349:CDS |
| TTAGAGTTGAGACAGAACAA+TGG | 0.748998 | 4.4:+33464811 | MS.gene052349:CDS |
| TTACTGTTGAGGTCCCTCCG+GGG | 0.752755 | 4.4:-33462854 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATAACTTATAAACA+TGG | - | chr4.4:33464102-33464121 | None:intergenic | 10.0% |
| !! | TATAACAAAAGATAAAATGA+AGG | + | chr4.4:33463282-33463301 | MS.gene052349:intron | 15.0% |
| !! | TTATTAAAGTCGTATTTAAT+TGG | - | chr4.4:33464518-33464537 | None:intergenic | 15.0% |
| !! | AACAAAAAATGAAAGTTTGA+AGG | - | chr4.4:33463195-33463214 | None:intergenic | 20.0% |
| !! | AATGAACAAAATGTAGTTAA+GGG | + | chr4.4:33465206-33465225 | MS.gene052349:CDS | 20.0% |
| !! | TTAAAACTAGACATATCATA+AGG | + | chr4.4:33463481-33463500 | MS.gene052349:intron | 20.0% |
| !!! | AAATTTTGACAAACAAGTTT+CGG | + | chr4.4:33463861-33463880 | MS.gene052349:CDS | 20.0% |
| !!! | ACGTCTGAATTTTTTATTAA+TGG | - | chr4.4:33464546-33464565 | None:intergenic | 20.0% |
| !!! | ATAAAAATTTCTAAAGATGG+TGG | - | chr4.4:33464047-33464066 | None:intergenic | 20.0% |
| !!! | CAAACTTTCATTTTTTGTTT+GGG | + | chr4.4:33463196-33463215 | MS.gene052349:intron | 20.0% |
| !!! | CAGATAAAAATTTCTAAAGA+TGG | - | chr4.4:33464050-33464069 | None:intergenic | 20.0% |
| !!! | CTGAATTTTTTATTAATGGT+GGG | - | chr4.4:33464542-33464561 | None:intergenic | 20.0% |
| !!! | TCAAACTTTCATTTTTTGTT+TGG | + | chr4.4:33463195-33463214 | MS.gene052349:intron | 20.0% |
| !!! | TCTAGTTTTAAACTTATTTC+TGG | - | chr4.4:33463472-33463491 | None:intergenic | 20.0% |
| !!! | TCTGAATTTTTTATTAATGG+TGG | - | chr4.4:33464543-33464562 | None:intergenic | 20.0% |
| !!! | TTGAATTCGTTCTTTTAATT+CGG | - | chr4.4:33464683-33464702 | None:intergenic | 20.0% |
| ! | AATAATCTACAATCAACTAG+TGG | - | chr4.4:33464456-33464475 | None:intergenic | 25.0% |
| ! | AATACAAAGTTAATGCAAAC+AGG | - | chr4.4:33465074-33465093 | None:intergenic | 25.0% |
| ! | ATCTAAATTACATAGCTCAT+TGG | - | chr4.4:33464143-33464162 | None:intergenic | 25.0% |
| ! | ATGAACAAAATGTAGTTAAG+GGG | + | chr4.4:33465207-33465226 | MS.gene052349:CDS | 25.0% |
| ! | CAACATATAATCCTTAGAAA+TGG | - | chr4.4:33465029-33465048 | None:intergenic | 25.0% |
| ! | GAAGAATAAAGATTTGTGAA+GGG | + | chr4.4:33463728-33463747 | MS.gene052349:CDS | 25.0% |
| ! | GAATGAACAAAATGTAGTTA+AGG | + | chr4.4:33465205-33465224 | MS.gene052349:CDS | 25.0% |
| ! | TAAGTACTTATGAGATTGTT+TGG | - | chr4.4:33463524-33463543 | None:intergenic | 25.0% |
| ! | TATCATCAAGAAAATCCAAA+TGG | + | chr4.4:33462747-33462766 | MS.gene052349:CDS | 25.0% |
| ! | TTTGAAGGAGAAAAATAAAG+AGG | - | chr4.4:33463180-33463199 | None:intergenic | 25.0% |
| !! | ATCAACAGTTAATGATTTTG+AGG | + | chr4.4:33463822-33463841 | MS.gene052349:CDS | 25.0% |
| !! | CATTTCTAAGGATTATATGT+TGG | + | chr4.4:33465027-33465046 | MS.gene052349:intron | 25.0% |
| !! | CTTTGTATTTTCTTTCACAT+AGG | + | chr4.4:33465085-33465104 | MS.gene052349:intron | 25.0% |
| !! | TAACTACATTTTGTTCATTC+TGG | - | chr4.4:33465205-33465224 | None:intergenic | 25.0% |
| !! | TCAACAGTTAATGATTTTGA+GGG | + | chr4.4:33463823-33463842 | MS.gene052349:CDS | 25.0% |
| !! | TGAATTTTATTGAACTTTGC+AGG | + | chr4.4:33464264-33464283 | MS.gene052349:intron | 25.0% |
| !! | TTACATCATTTTGTAGAGAT+TGG | - | chr4.4:33464941-33464960 | None:intergenic | 25.0% |
| !! | TTGATCTTTAACTTAGAAAG+TGG | + | chr4.4:33463697-33463716 | MS.gene052349:intron | 25.0% |
| !!! | AATAGCAAAAAGCATTTGTA+TGG | - | chr4.4:33464218-33464237 | None:intergenic | 25.0% |
| !!! | ATGTTTTTAACATGATGGTT+TGG | + | chr4.4:33463664-33463683 | MS.gene052349:intron | 25.0% |
| !!! | GTTTTAAACTTATTTCTGGT+TGG | - | chr4.4:33463468-33463487 | None:intergenic | 25.0% |
| !!! | TATGCATGTTTTTAACATGA+TGG | + | chr4.4:33463659-33463678 | MS.gene052349:intron | 25.0% |
| !!! | TATTTTGTCCTTTTTAGTGT+TGG | + | chr4.4:33464234-33464253 | MS.gene052349:intron | 25.0% |
| AAGTGAAACTAACAGAAACA+AGG | - | chr4.4:33463156-33463175 | None:intergenic | 30.0% | |
| AATCAAGAATATACCTGATG+AGG | - | chr4.4:33464427-33464446 | None:intergenic | 30.0% | |
| AGTGAAACTAACAGAAACAA+GGG | - | chr4.4:33463155-33463174 | None:intergenic | 30.0% | |
| ATCACCATTGGAACATTTAT+TGG | - | chr4.4:33462929-33462948 | None:intergenic | 30.0% | |
| ATCAGAAGGGATATATTTGA+GGG | + | chr4.4:33463918-33463937 | MS.gene052349:CDS | 30.0% | |
| ATGAGAAACCAACACTAAAA+AGG | - | chr4.4:33464245-33464264 | None:intergenic | 30.0% | |
| GACTATTGTAAGAAGAATAG+TGG | + | chr4.4:33464782-33464801 | MS.gene052349:CDS | 30.0% | |
| GATATTATTAGAGAGAATGG+AGG | + | chr4.4:33464327-33464346 | MS.gene052349:CDS | 30.0% | |
| GGAAGAATAAAGATTTGTGA+AGG | + | chr4.4:33463727-33463746 | MS.gene052349:CDS | 30.0% | |
| GTTTCATGTTTCCATTTCTA+AGG | + | chr4.4:33465015-33465034 | MS.gene052349:intron | 30.0% | |
| TACTTGAAATTCAACTCTCT+TGG | - | chr4.4:33464404-33464423 | None:intergenic | 30.0% | |
| ! | ATTTTATTGAACTTTGCAGG+TGG | + | chr4.4:33464267-33464286 | MS.gene052349:intron | 30.0% |
| !! | TTTTCTTGATGATAATGCTG+TGG | - | chr4.4:33462741-33462760 | None:intergenic | 30.0% |
| AAAATGGAGGGATTGTCAAA+GGG | + | chr4.4:33464304-33464323 | MS.gene052349:CDS | 35.0% | |
| AACATGTTAGGGACATTGTT+TGG | + | chr4.4:33462875-33462894 | MS.gene052349:CDS | 35.0% | |
| AACTCTTTCTGTGTATCCAA+TGG | - | chr4.4:33465251-33465270 | None:intergenic | 35.0% | |
| AACTTAGAAAGTGGAATGCA+GGG | + | chr4.4:33463706-33463725 | MS.gene052349:intron | 35.0% | |
| AAGAAAGATGGCAATGCAAA+GGG | - | chr4.4:33465478-33465497 | None:intergenic | 35.0% | |
| AAGATTGTCAGTGTCATCTT+AGG | - | chr4.4:33464654-33464673 | None:intergenic | 35.0% | |
| AAGCATTTGTATGGCATGTT+CGG | - | chr4.4:33464209-33464228 | None:intergenic | 35.0% | |
| ACCTCAACAGTAACATGTTA+GGG | + | chr4.4:33462864-33462883 | MS.gene052349:CDS | 35.0% | |
| AGAAAACAGAAAACACAGTG+AGG | + | chr4.4:33465322-33465341 | MS.gene052349:CDS | 35.0% | |
| AGAGATAGCAGTTAAGAAGT+TGG | + | chr4.4:33463081-33463100 | MS.gene052349:CDS | 35.0% | |
| AGCTCCAATAAATGTTCCAA+TGG | + | chr4.4:33462922-33462941 | MS.gene052349:CDS | 35.0% | |
| CAGCTACTTGAAACTGAATT+AGG | - | chr4.4:33463607-33463626 | None:intergenic | 35.0% | |
| CATCAGAAGGGATATATTTG+AGG | + | chr4.4:33463917-33463936 | MS.gene052349:CDS | 35.0% | |
| CTCAAATATATCCCTTCTGA+TGG | - | chr4.4:33463919-33463938 | None:intergenic | 35.0% | |
| CTTACATTCAACAACCTCTT+AGG | + | chr4.4:33464974-33464993 | MS.gene052349:intron | 35.0% | |
| GATAATAGTGTTCTTGCAAG+TGG | + | chr4.4:33463994-33464013 | MS.gene052349:CDS | 35.0% | |
| GATTTGAGAATCAGAATGCA+AGG | - | chr4.4:33464919-33464938 | None:intergenic | 35.0% | |
| GGGGATATTATTAGAGAGAA+TGG | + | chr4.4:33464324-33464343 | MS.gene052349:CDS | 35.0% | |
| TAACTTAGAAAGTGGAATGC+AGG | + | chr4.4:33463705-33463724 | MS.gene052349:intron | 35.0% | |
| TAAGATGACACTGACAATCT+TGG | + | chr4.4:33464653-33464672 | MS.gene052349:intron | 35.0% | |
| TAGCAGTTAAGAAGTTGGAA+AGG | + | chr4.4:33463086-33463105 | MS.gene052349:CDS | 35.0% | |
| TGAAGGGAAGAATGTTGATA+GGG | + | chr4.4:33463744-33463763 | MS.gene052349:CDS | 35.0% | |
| TTAGAGTTGAGACAGAACAA+TGG | + | chr4.4:33464811-33464830 | MS.gene052349:CDS | 35.0% | |
| TTCAAAATCAACACAGAGCA+TGG | - | chr4.4:33465177-33465196 | None:intergenic | 35.0% | |
| TTGTTTCCAATGTCTTGGAA+CGG | - | chr4.4:33465413-33465432 | None:intergenic | 35.0% | |
| ! | AAATGTTCCAATGGTGATGT+TGG | + | chr4.4:33462931-33462950 | MS.gene052349:CDS | 35.0% |
| ! | AATAGTAGTTTGCAGCTCAA+AGG | + | chr4.4:33465280-33465299 | MS.gene052349:CDS | 35.0% |
| ! | ATTCTGAGAAGGAAAATGGA+GGG | + | chr4.4:33464292-33464311 | MS.gene052349:CDS | 35.0% |
| ! | CTAATTCAGTTTCAAGTAGC+TGG | + | chr4.4:33463605-33463624 | MS.gene052349:intron | 35.0% |
| ! | GAAAACACAGTGAGGTTTTA+AGG | + | chr4.4:33465330-33465349 | MS.gene052349:CDS | 35.0% |
| ! | TGAATTTCAAGTACCTCATC+AGG | + | chr4.4:33464411-33464430 | MS.gene052349:CDS | 35.0% |
| !! | AAACTTATTTCTGGTTGGAC+CGG | - | chr4.4:33463463-33463482 | None:intergenic | 35.0% |
| !! | AGGAAAAAGTGTCATGTGAA+GGG | + | chr4.4:33464736-33464755 | MS.gene052349:intron | 35.0% |
| !! | CAGTTAATGATTTTGAGGGA+AGG | + | chr4.4:33463827-33463846 | MS.gene052349:CDS | 35.0% |
| !! | GAAGAATGTTGATAGGGTTT+TGG | + | chr4.4:33463750-33463769 | MS.gene052349:CDS | 35.0% |
| !! | TTAATGATTTTGAGGGAAGG+AGG | + | chr4.4:33463830-33463849 | MS.gene052349:CDS | 35.0% |
| AAATGGAGGGATTGTCAAAG+GGG | + | chr4.4:33464305-33464324 | MS.gene052349:CDS | 40.0% | |
| AAGCTATTCTTGAGAGCTTG+TGG | + | chr4.4:33463335-33463354 | MS.gene052349:intron | 40.0% | |
| AAGTGTAGGATTCTTGGAGT+TGG | - | chr4.4:33462794-33462813 | None:intergenic | 40.0% | |
| ACATTTATTGGAGCTTCAGC+AGG | - | chr4.4:33462917-33462936 | None:intergenic | 40.0% | |
| AGAAAAACACATGCTGCTAG+AGG | + | chr4.4:33465362-33465381 | MS.gene052349:CDS | 40.0% | |
| AGAGAAGTGGAAGTTTCAAG+CGG | + | chr4.4:33463018-33463037 | MS.gene052349:CDS | 40.0% | |
| ATGTTGGAGCCGTTTATTTC+TGG | + | chr4.4:33465043-33465062 | MS.gene052349:intron | 40.0% | |
| GAAAATGGAGGGATTGTCAA+AGG | + | chr4.4:33464303-33464322 | MS.gene052349:CDS | 40.0% | |
| GAAGAAAGATGGCAATGCAA+AGG | - | chr4.4:33465479-33465498 | None:intergenic | 40.0% | |
| GAAGTAAACACAGTCCTAAG+AGG | - | chr4.4:33464991-33465010 | None:intergenic | 40.0% | |
| GACCTCAACAGTAACATGTT+AGG | + | chr4.4:33462863-33462882 | MS.gene052349:CDS | 40.0% | |
| GTAGCTGATGTATCATGAGT+TGG | + | chr4.4:33463581-33463600 | MS.gene052349:intron | 40.0% | |
| GTGAAGGGAAGAATGTTGAT+AGG | + | chr4.4:33463743-33463762 | MS.gene052349:CDS | 40.0% | |
| GTGCACAAGCTCAAATATAC+CGG | + | chr4.4:33463441-33463460 | MS.gene052349:intron | 40.0% | |
| TCCCTAACATGTTACTGTTG+AGG | - | chr4.4:33462868-33462887 | None:intergenic | 40.0% | |
| TCTCAGCAGTTGAAGAAAGA+TGG | - | chr4.4:33465490-33465509 | None:intergenic | 40.0% | |
| TTTGAGGGAGTTTGAAGAGA+TGG | + | chr4.4:33463933-33463952 | MS.gene052349:CDS | 40.0% | |
| ! | ACGAGTTGTTTCCAATGTCT+TGG | - | chr4.4:33465418-33465437 | None:intergenic | 40.0% |
| ! | GAGAGAGTTGTTATTGAGAG+AGG | + | chr4.4:33462974-33462993 | MS.gene052349:CDS | 40.0% |
| ! | GATTCTGAGAAGGAAAATGG+AGG | + | chr4.4:33464291-33464310 | MS.gene052349:CDS | 40.0% |
| ! | GGAGATTCTGAGAAGGAAAA+TGG | + | chr4.4:33464288-33464307 | MS.gene052349:CDS | 40.0% |
| ! | GTTGTTATTGAGAGAGGTGA+TGG | + | chr4.4:33462980-33462999 | MS.gene052349:CDS | 40.0% |
| !! | CAGGAAAAAGTGTCATGTGA+AGG | + | chr4.4:33464735-33464754 | MS.gene052349:intron | 40.0% |
| !! | TGAGTGTAACTTGTTGAGGA+TGG | + | chr4.4:33463054-33463073 | MS.gene052349:CDS | 40.0% |
| !!! | CACAGTGAGGTTTTAAGGAA+CGG | + | chr4.4:33465335-33465354 | MS.gene052349:CDS | 40.0% |
| AAAACACATGCTGCTAGAGG+TGG | + | chr4.4:33465365-33465384 | MS.gene052349:CDS | 45.0% | |
| AAGTTTCGGTTCTGCAGAGA+CGG | + | chr4.4:33463875-33463894 | MS.gene052349:CDS | 45.0% | |
| ACAACTCGTCATTGTTGACG+AGG | + | chr4.4:33465429-33465448 | MS.gene052349:CDS | 45.0% | |
| ACCTAGCATCTCCTGCATTT+GGG | - | chr4.4:33464838-33464857 | None:intergenic | 45.0% | |
| AGAACAATGGTCCCAAATGC+AGG | + | chr4.4:33464824-33464843 | MS.gene052349:CDS | 45.0% | |
| CAACGATCCAACATCACCAT+TGG | - | chr4.4:33462941-33462960 | None:intergenic | 45.0% | |
| CTTTCACATAGGTGCAAGAG+TGG | + | chr4.4:33465096-33465115 | MS.gene052349:intron | 45.0% | |
| GGAAAGGACTCGTTCAAAGA+TGG | + | chr4.4:33463102-33463121 | MS.gene052349:CDS | 45.0% | |
| GGACTCGTTCAAAGATGGAA+CGG | + | chr4.4:33463107-33463126 | MS.gene052349:CDS | 45.0% | |
| TAAGGGGACGAAATGTCCAT+CGG | + | chr4.4:33465223-33465242 | MS.gene052349:CDS | 45.0% | |
| TCTTGCAATGTCCTGAACAC+AGG | - | chr4.4:33464764-33464783 | None:intergenic | 45.0% | |
| TGAAGCAGAACTACTAGCAG+TGG | - | chr4.4:33464377-33464396 | None:intergenic | 45.0% | |
| TGTAGGATTCTTGGAGTTGG+AGG | - | chr4.4:33462791-33462810 | None:intergenic | 45.0% | |
| TGTGTATCCAATGGAACCGA+TGG | - | chr4.4:33465242-33465261 | None:intergenic | 45.0% | |
| TGTTGGATCGTTGTGAAGAG+AGG | + | chr4.4:33462948-33462967 | MS.gene052349:CDS | 45.0% | |
| TTGTTGACGAGGCAGCAAAA+TGG | + | chr4.4:33465440-33465459 | MS.gene052349:CDS | 45.0% | |
| ! | CGAGGAAAGTGTAGGATTCT+TGG | - | chr4.4:33462800-33462819 | None:intergenic | 45.0% |
| ! | TGCGTGTTGACAAATCATGC+AGG | + | chr4.4:33464716-33464735 | MS.gene052349:intron | 45.0% |
| ! | TTGTGCACTGACATAAGCAC+TGG | - | chr4.4:33463429-33463448 | None:intergenic | 45.0% |
| !! | AAGCACTGGTGAGACTGTTT+GGG | - | chr4.4:33463415-33463434 | None:intergenic | 45.0% |
| !! | CAGGAAGCGCCAGAAATAAA+CGG | - | chr4.4:33465055-33465074 | None:intergenic | 45.0% |
| !! | GAAATGTCCATCGGTTCCAT+TGG | + | chr4.4:33465232-33465251 | MS.gene052349:CDS | 45.0% |
| !! | GAGCTGAGTGTAACTTGTTG+AGG | + | chr4.4:33463050-33463069 | MS.gene052349:CDS | 45.0% |
| !! | TAAGCACTGGTGAGACTGTT+TGG | - | chr4.4:33463416-33463435 | None:intergenic | 45.0% |
| AAGATCGGAGGACCATCAGA+AGG | + | chr4.4:33463904-33463923 | MS.gene052349:CDS | 50.0% | |
| AATGCAGGAGATGCTAGGTC+AGG | + | chr4.4:33464839-33464858 | MS.gene052349:CDS | 50.0% | |
| AGATCGGAGGACCATCAGAA+GGG | + | chr4.4:33463905-33463924 | MS.gene052349:CDS | 50.0% | |
| AGGATTCTTGGAGTTGGAGG+AGG | - | chr4.4:33462788-33462807 | None:intergenic | 50.0% | |
| ATTCTTGGAGTTGGAGGAGG+AGG | - | chr4.4:33462785-33462804 | None:intergenic | 50.0% | |
| CGAATGCCGTTCCAAGACAT+TGG | + | chr4.4:33465404-33465423 | MS.gene052349:CDS | 50.0% | |
| CGTTGTTGGAGGAAGAGAAG+TGG | + | chr4.4:33463005-33463024 | MS.gene052349:CDS | 50.0% | |
| GACCTAGCATCTCCTGCATT+TGG | - | chr4.4:33464839-33464858 | None:intergenic | 50.0% | |
| GGAAGAGATGGAAGAACTGC+AGG | + | chr4.4:33464866-33464885 | MS.gene052349:CDS | 50.0% | |
| GGATCGTTGTGAAGAGAGGA+GGG | + | chr4.4:33462952-33462971 | MS.gene052349:CDS | 50.0% | |
| TCCCAAATGCAGGAGATGCT+AGG | + | chr4.4:33464834-33464853 | MS.gene052349:CDS | 50.0% | |
| TCTTGGAACGGCATTCGCTT+TGG | - | chr4.4:33465401-33465420 | None:intergenic | 50.0% | |
| TGCAGGCTTCACGAGATTTC+TGG | + | chr4.4:33464883-33464902 | MS.gene052349:CDS | 50.0% | |
| TGGATCGTTGTGAAGAGAGG+AGG | + | chr4.4:33462951-33462970 | MS.gene052349:CDS | 50.0% | |
| TGTGAAGGGAACCTGTGTTC+AGG | + | chr4.4:33464750-33464769 | MS.gene052349:CDS | 50.0% | |
| TGTTACTGTTGAGGTCCCTC+CGG | - | chr4.4:33462859-33462878 | None:intergenic | 50.0% | |
| ! | TGCAGGTGGAGATTCTGAGA+AGG | + | chr4.4:33464281-33464300 | MS.gene052349:intron | 50.0% |
| !! | AGGTGATGGATCGTTGTTGG+AGG | + | chr4.4:33462994-33463013 | MS.gene052349:CDS | 50.0% |
| !! | GAGAGGTGATGGATCGTTGT+TGG | + | chr4.4:33462991-33463010 | MS.gene052349:CDS | 50.0% |
| AGGAGATGCTAGGTCAGGTG+AGG | + | chr4.4:33464844-33464863 | MS.gene052349:CDS | 55.0% | |
| AGGTCAGGTGAGGGAAGAGA+TGG | + | chr4.4:33464854-33464873 | MS.gene052349:CDS | 55.0% | |
| CAGAGACGGCTCGAGAAGAT+CGG | + | chr4.4:33463889-33463908 | MS.gene052349:CDS | 55.0% | |
| GGAGATGCTAGGTCAGGTGA+GGG | + | chr4.4:33464845-33464864 | MS.gene052349:CDS | 55.0% | |
| GTTACTGTTGAGGTCCCTCC+GGG | - | chr4.4:33462858-33462877 | None:intergenic | 55.0% | |
| TTACTGTTGAGGTCCCTCCG+GGG | - | chr4.4:33462857-33462876 | None:intergenic | 55.0% | |
| !! | AGGTGGATGGTGGTGCCATT+TGG | - | chr4.4:33462765-33462784 | None:intergenic | 55.0% |
| ACTTTCCTCGCCGTCCTCGT+CGG | + | chr4.4:33462810-33462829 | MS.gene052349:CDS | 60.0% | |
| AGACGGCTCGAGAAGATCGG+AGG | + | chr4.4:33463892-33463911 | MS.gene052349:CDS | 60.0% | |
| ATGGGACTCTCCGACGAGGA+CGG | - | chr4.4:33462823-33462842 | None:intergenic | 60.0% | |
| CTTGGAGTTGGAGGAGGAGG+TGG | - | chr4.4:33462782-33462801 | None:intergenic | 60.0% | |
| GAAGATGGGACTCTCCGACG+AGG | - | chr4.4:33462827-33462846 | None:intergenic | 60.0% | |
| GAGTTGGAGGAGGAGGTGGA+TGG | - | chr4.4:33462778-33462797 | None:intergenic | 60.0% | |
| TTGGAGGAGGAGGTGGATGG+TGG | - | chr4.4:33462775-33462794 | None:intergenic | 60.0% | |
| ! | GAGGACGGCGAGGAAAGTGT+AGG | - | chr4.4:33462808-33462827 | None:intergenic | 60.0% |
| ATCTTCCTCCGCTCCCCGGA+GGG | + | chr4.4:33462841-33462860 | MS.gene052349:CDS | 65.0% | |
| TCCCATCTTCCTCCGCTCCC+CGG | + | chr4.4:33462837-33462856 | MS.gene052349:CDS | 65.0% | |
| TCCGGGGAGCGGAGGAAGAT+GGG | - | chr4.4:33462841-33462860 | None:intergenic | 65.0% | |
| ACTCTCCGACGAGGACGGCG+AGG | - | chr4.4:33462818-33462837 | None:intergenic | 70.0% | |
| CATCTTCCTCCGCTCCCCGG+AGG | + | chr4.4:33462840-33462859 | MS.gene052349:CDS | 70.0% | |
| CTCCGGGGAGCGGAGGAAGA+TGG | - | chr4.4:33462842-33462861 | None:intergenic | 70.0% | |
| GTTGAGGTCCCTCCGGGGAG+CGG | - | chr4.4:33462852-33462871 | None:intergenic | 70.0% | |
| ! | GAGGTCCCTCCGGGGAGCGG+AGG | - | chr4.4:33462849-33462868 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 33462734 | 33465535 | 33462734 | ID=MS.gene052349 |
| chr4.4 | mRNA | 33462734 | 33465535 | 33462734 | ID=MS.gene052349.t1;Parent=MS.gene052349 |
| chr4.4 | exon | 33462734 | 33463162 | 33462734 | ID=MS.gene052349.t1.exon1;Parent=MS.gene052349.t1 |
| chr4.4 | CDS | 33462734 | 33463162 | 33462734 | ID=cds.MS.gene052349.t1;Parent=MS.gene052349.t1 |
| chr4.4 | exon | 33463727 | 33464026 | 33463727 | ID=MS.gene052349.t1.exon2;Parent=MS.gene052349.t1 |
| chr4.4 | CDS | 33463727 | 33464026 | 33463727 | ID=cds.MS.gene052349.t1;Parent=MS.gene052349.t1 |
| chr4.4 | exon | 33464286 | 33464432 | 33464286 | ID=MS.gene052349.t1.exon3;Parent=MS.gene052349.t1 |
| chr4.4 | CDS | 33464286 | 33464432 | 33464286 | ID=cds.MS.gene052349.t1;Parent=MS.gene052349.t1 |
| chr4.4 | exon | 33464738 | 33464956 | 33464738 | ID=MS.gene052349.t1.exon4;Parent=MS.gene052349.t1 |
| chr4.4 | CDS | 33464738 | 33464956 | 33464738 | ID=cds.MS.gene052349.t1;Parent=MS.gene052349.t1 |
| chr4.4 | exon | 33465107 | 33465535 | 33465107 | ID=MS.gene052349.t1.exon5;Parent=MS.gene052349.t1 |
| chr4.4 | CDS | 33465107 | 33465535 | 33465107 | ID=cds.MS.gene052349.t1;Parent=MS.gene052349.t1 |
| Gene Sequence |
| Protein sequence |
