Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073059.t1 | XP_003603595.1 | 95.7 | 713 | 25 | 3 | 1 | 708 | 1 | 712 | 0.00E+00 | 1155.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073059.t1 | Q93YU8 | 30.9 | 787 | 434 | 16 | 1 | 686 | 1 | 778 | 1.6e-41 | 172.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073059.t1 | G7J2X7 | 95.7 | 713 | 25 | 3 | 1 | 708 | 1 | 712 | 0.0e+00 | 1155.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene073059 | 0.807166 | 5.77E-50 | -1.69E-46 |
| MS.gene050667 | MS.gene073059 | 0.815067 | 1.12E-51 | -1.69E-46 |
| MS.gene050874 | MS.gene073059 | 0.812656 | 3.80E-51 | -1.69E-46 |
| MS.gene050875 | MS.gene073059 | 0.838342 | 3.05E-57 | -1.69E-46 |
| MS.gene051025 | MS.gene073059 | 0.841904 | 3.58E-58 | -1.69E-46 |
| MS.gene05124 | MS.gene073059 | 0.801537 | 8.59E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene073059 | 0.805074 | 1.59E-49 | -1.69E-46 |
| MS.gene051914 | MS.gene073059 | 0.871648 | 5.82E-67 | -1.69E-46 |
| MS.gene052143 | MS.gene073059 | 0.802688 | 4.98E-49 | -1.69E-46 |
| MS.gene052169 | MS.gene073059 | 0.85365 | 2.08E-61 | -1.69E-46 |
| MS.gene052209 | MS.gene073059 | 0.82156 | 3.78E-53 | -1.69E-46 |
| MS.gene052308 | MS.gene073059 | 0.849445 | 3.22E-60 | -1.69E-46 |
| MS.gene052349 | MS.gene073059 | 0.801127 | 1.04E-48 | -1.69E-46 |
| MS.gene052367 | MS.gene073059 | 0.831013 | 2.12E-55 | -1.69E-46 |
| MS.gene053108 | MS.gene073059 | 0.810566 | 1.08E-50 | -1.69E-46 |
| MS.gene053173 | MS.gene073059 | 0.866503 | 2.72E-65 | -1.69E-46 |
| MS.gene053348 | MS.gene073059 | 0.830228 | 3.31E-55 | -1.69E-46 |
| MS.gene053416 | MS.gene073059 | 0.803257 | 3.80E-49 | -1.69E-46 |
| MS.gene053417 | MS.gene073059 | 0.80003 | 1.74E-48 | -1.69E-46 |
| MS.gene054018 | MS.gene073059 | 0.811323 | 7.42E-51 | -1.69E-46 |
| MS.gene054459 | MS.gene073059 | 0.845231 | 4.62E-59 | -1.69E-46 |
| MS.gene054551 | MS.gene073059 | 0.856097 | 4.05E-62 | -1.69E-46 |
| MS.gene054593 | MS.gene073059 | 0.826387 | 2.79E-54 | -1.69E-46 |
| MS.gene054633 | MS.gene073059 | 0.848609 | 5.50E-60 | -1.69E-46 |
| MS.gene054662 | MS.gene073059 | 0.908898 | 1.03E-81 | -1.69E-46 |
| MS.gene054851 | MS.gene073059 | 0.81571 | 8.04E-52 | -1.69E-46 |
| MS.gene054885 | MS.gene073059 | 0.800529 | 1.38E-48 | -1.69E-46 |
| MS.gene054941 | MS.gene073059 | 0.81434 | 1.62E-51 | -1.69E-46 |
| MS.gene055308 | MS.gene073059 | 0.836298 | 1.02E-56 | -1.69E-46 |
| MS.gene055578 | MS.gene073059 | 0.831216 | 1.89E-55 | -1.69E-46 |
| MS.gene055616 | MS.gene073059 | 0.805256 | 1.46E-49 | -1.69E-46 |
| MS.gene055982 | MS.gene073059 | 0.80459 | 2.01E-49 | -1.69E-46 |
| MS.gene056041 | MS.gene073059 | 0.823021 | 1.73E-53 | -1.69E-46 |
| MS.gene05640 | MS.gene073059 | 0.874931 | 4.59E-68 | -1.69E-46 |
| MS.gene05652 | MS.gene073059 | 0.863457 | 2.46E-64 | -1.69E-46 |
| MS.gene056583 | MS.gene073059 | 0.800696 | 1.28E-48 | -1.69E-46 |
| MS.gene056618 | MS.gene073059 | 0.816228 | 6.16E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene073059 | 0.816551 | 5.22E-52 | -1.69E-46 |
| MS.gene05732 | MS.gene073059 | 0.824082 | 9.79E-54 | -1.69E-46 |
| MS.gene057367 | MS.gene073059 | 0.894261 | 2.91E-75 | -1.69E-46 |
| MS.gene057458 | MS.gene073059 | 0.825808 | 3.83E-54 | -1.69E-46 |
| MS.gene057669 | MS.gene073059 | 0.854692 | 1.04E-61 | -1.69E-46 |
| MS.gene058128 | MS.gene073059 | 0.850505 | 1.63E-60 | -1.69E-46 |
| MS.gene058827 | MS.gene073059 | 0.804033 | 2.62E-49 | -1.69E-46 |
| MS.gene058849 | MS.gene073059 | 0.801533 | 8.61E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene073059 | 0.848017 | 8.01E-60 | -1.69E-46 |
| MS.gene05926 | MS.gene073059 | 0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene059553 | MS.gene073059 | 0.840959 | 6.35E-58 | -1.69E-46 |
| MS.gene05960 | MS.gene073059 | 0.810574 | 1.08E-50 | -1.69E-46 |
| MS.gene059616 | MS.gene073059 | 0.821543 | 3.82E-53 | -1.69E-46 |
| MS.gene060275 | MS.gene073059 | 0.832377 | 9.79E-56 | -1.69E-46 |
| MS.gene060291 | MS.gene073059 | 0.858886 | 6.05E-63 | -1.69E-46 |
| MS.gene060473 | MS.gene073059 | 0.805417 | 1.35E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene073059 | 0.913308 | 7.15E-84 | -1.69E-46 |
| MS.gene061260 | MS.gene073059 | 0.829576 | 4.76E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073059.t1 | MTR_3g109450 | 97.195 | 713 | 14 | 3 | 1 | 708 | 1 | 712 | 0.0 | 1423 |
| MS.gene073059.t1 | MTR_2g102050 | 54.513 | 565 | 226 | 5 | 167 | 708 | 204 | 760 | 0.0 | 585 |
| MS.gene073059.t1 | MTR_4g012430 | 54.726 | 402 | 170 | 4 | 265 | 661 | 117 | 511 | 2.67e-145 | 434 |
| MS.gene073059.t1 | MTR_4g012430 | 64.407 | 59 | 21 | 0 | 1 | 59 | 1 | 59 | 2.12e-13 | 73.6 |
| MS.gene073059.t1 | MTR_8g006850 | 28.634 | 454 | 289 | 9 | 273 | 702 | 279 | 721 | 1.32e-53 | 197 |
| MS.gene073059.t1 | MTR_8g006850 | 55.932 | 59 | 26 | 0 | 1 | 59 | 1 | 59 | 3.89e-14 | 76.6 |
| MS.gene073059.t1 | MTR_5g022530 | 28.903 | 474 | 290 | 9 | 247 | 696 | 181 | 631 | 1.49e-52 | 193 |
| MS.gene073059.t1 | MTR_7g081705 | 28.728 | 456 | 290 | 6 | 267 | 702 | 401 | 841 | 6.12e-52 | 194 |
| MS.gene073059.t1 | MTR_7g081705 | 57.627 | 59 | 25 | 0 | 1 | 59 | 1 | 59 | 2.16e-14 | 77.4 |
| MS.gene073059.t1 | MTR_2g048360 | 29.247 | 465 | 300 | 9 | 251 | 698 | 179 | 631 | 6.24e-46 | 174 |
| MS.gene073059.t1 | MTR_4g127620 | 26.183 | 676 | 396 | 20 | 1 | 587 | 1 | 662 | 7.14e-46 | 175 |
| MS.gene073059.t1 | MTR_1g112850 | 26.755 | 527 | 331 | 12 | 211 | 707 | 236 | 737 | 5.52e-45 | 172 |
| MS.gene073059.t1 | MTR_8g091250 | 26.418 | 670 | 368 | 22 | 1 | 592 | 1 | 623 | 6.07e-42 | 163 |
| MS.gene073059.t1 | MTR_3g078830 | 25.036 | 703 | 388 | 25 | 1 | 586 | 1 | 681 | 1.78e-40 | 159 |
| MS.gene073059.t1 | MTR_3g088190 | 24.009 | 454 | 307 | 7 | 273 | 697 | 456 | 900 | 5.70e-33 | 136 |
| MS.gene073059.t1 | MTR_5g087740 | 27.184 | 412 | 218 | 11 | 271 | 630 | 308 | 689 | 1.48e-30 | 129 |
| MS.gene073059.t1 | MTR_5g098980 | 25.060 | 419 | 276 | 7 | 284 | 693 | 367 | 756 | 3.01e-30 | 127 |
| MS.gene073059.t1 | MTR_3g115120 | 23.007 | 439 | 287 | 10 | 270 | 696 | 280 | 679 | 4.85e-26 | 114 |
| MS.gene073059.t1 | MTR_2g036920 | 28.269 | 283 | 161 | 7 | 271 | 521 | 503 | 775 | 7.11e-25 | 111 |
| MS.gene073059.t1 | MTR_2g036920 | 44.048 | 84 | 40 | 3 | 1 | 78 | 1 | 83 | 1.69e-12 | 71.6 |
| MS.gene073059.t1 | MTR_2g036920 | 26.437 | 348 | 211 | 9 | 271 | 584 | 474 | 810 | 7.79e-25 | 110 |
| MS.gene073059.t1 | MTR_2g036920 | 44.048 | 84 | 40 | 3 | 1 | 78 | 1 | 83 | 1.43e-12 | 71.6 |
| MS.gene073059.t1 | MTR_3g096950 | 24.217 | 351 | 250 | 5 | 354 | 697 | 434 | 775 | 5.53e-21 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073059.t1 | AT5G25590 | 57.106 | 774 | 262 | 16 | 1 | 707 | 1 | 771 | 0.0 | 729 |
| MS.gene073059.t1 | AT1G52320 | 62.585 | 441 | 163 | 1 | 258 | 696 | 313 | 753 | 0.0 | 568 |
| MS.gene073059.t1 | AT1G52320 | 62.585 | 441 | 163 | 1 | 258 | 696 | 336 | 776 | 0.0 | 568 |
| MS.gene073059.t1 | AT1G52320 | 62.585 | 441 | 163 | 1 | 258 | 696 | 336 | 776 | 0.0 | 568 |
| MS.gene073059.t1 | AT1G52320 | 62.670 | 442 | 161 | 3 | 258 | 696 | 10 | 450 | 0.0 | 566 |
| MS.gene073059.t1 | AT1G52320 | 62.670 | 442 | 161 | 3 | 258 | 696 | 10 | 450 | 0.0 | 566 |
| MS.gene073059.t1 | AT1G02110 | 28.964 | 473 | 294 | 7 | 252 | 702 | 249 | 701 | 4.41e-57 | 206 |
| MS.gene073059.t1 | AT1G02110 | 52.542 | 59 | 28 | 0 | 1 | 59 | 1 | 59 | 5.40e-13 | 72.8 |
| MS.gene073059.t1 | AT3G51290 | 29.730 | 444 | 284 | 5 | 273 | 704 | 202 | 629 | 9.67e-55 | 199 |
| MS.gene073059.t1 | AT3G51290 | 29.730 | 444 | 284 | 5 | 273 | 704 | 202 | 629 | 1.49e-54 | 201 |
| MS.gene073059.t1 | AT3G51290 | 29.279 | 444 | 280 | 6 | 273 | 704 | 202 | 623 | 3.05e-50 | 186 |
| MS.gene073059.t1 | AT3G60320 | 29.128 | 436 | 285 | 9 | 267 | 686 | 351 | 778 | 9.52e-47 | 178 |
| MS.gene073059.t1 | AT3G60320 | 46.847 | 111 | 55 | 2 | 1 | 111 | 1 | 107 | 7.78e-16 | 82.0 |
| MS.gene073059.t1 | AT2G27090 | 25.215 | 698 | 402 | 20 | 1 | 601 | 1 | 675 | 2.42e-46 | 176 |
| MS.gene073059.t1 | AT2G27090 | 25.215 | 698 | 402 | 20 | 1 | 601 | 1 | 675 | 2.42e-46 | 176 |
| MS.gene073059.t1 | AT4G39790 | 26.783 | 631 | 362 | 20 | 1 | 574 | 9 | 596 | 2.44e-42 | 164 |
| MS.gene073059.t1 | AT2G34670 | 28.539 | 445 | 278 | 10 | 272 | 696 | 250 | 674 | 3.37e-39 | 154 |
| MS.gene073059.t1 | AT4G30130 | 25.150 | 668 | 392 | 21 | 1 | 587 | 1 | 641 | 1.15e-34 | 141 |
| MS.gene073059.t1 | AT4G30130 | 25.150 | 668 | 392 | 21 | 1 | 587 | 1 | 641 | 1.15e-34 | 141 |
| MS.gene073059.t1 | AT1G21740 | 24.038 | 520 | 342 | 10 | 211 | 697 | 443 | 942 | 1.50e-32 | 135 |
| MS.gene073059.t1 | AT1G77500 | 25.670 | 448 | 294 | 8 | 273 | 703 | 451 | 876 | 1.98e-31 | 132 |
| MS.gene073059.t1 | AT4G35240 | 26.364 | 330 | 216 | 6 | 275 | 590 | 423 | 739 | 2.10e-27 | 119 |
| MS.gene073059.t1 | AT4G35240 | 26.364 | 330 | 216 | 6 | 275 | 590 | 423 | 739 | 2.10e-27 | 119 |
| MS.gene073059.t1 | AT4G35240 | 26.364 | 330 | 216 | 6 | 275 | 590 | 423 | 739 | 2.20e-27 | 119 |
| MS.gene073059.t1 | AT4G35240 | 26.364 | 330 | 216 | 6 | 275 | 590 | 423 | 739 | 2.20e-27 | 119 |
| MS.gene073059.t1 | AT1G20530 | 23.304 | 575 | 359 | 18 | 1 | 559 | 1 | 509 | 8.80e-27 | 116 |
| MS.gene073059.t1 | AT2G34670 | 26.974 | 456 | 256 | 16 | 158 | 568 | 121 | 544 | 1.04e-24 | 109 |
| MS.gene073059.t1 | AT2G19090 | 26.571 | 350 | 214 | 6 | 271 | 587 | 385 | 724 | 3.71e-24 | 108 |
| MS.gene073059.t1 | AT2G17110 | 25.079 | 315 | 224 | 3 | 275 | 577 | 313 | 627 | 1.39e-23 | 106 |
| MS.gene073059.t1 | AT5G54480 | 23.358 | 411 | 268 | 12 | 293 | 696 | 345 | 715 | 3.39e-17 | 86.3 |
| MS.gene073059.t1 | AT4G30130 | 36.508 | 126 | 77 | 1 | 352 | 477 | 398 | 520 | 1.16e-14 | 77.8 |
| MS.gene073059.t1 | AT4G30130 | 36.508 | 126 | 77 | 1 | 352 | 477 | 398 | 520 | 1.16e-14 | 77.8 |
Find 165 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTATGGATATGGATAATA+TGG | 0.114095 | 3.3:+90008195 | MS.gene073059:CDS |
| GGGCTTGGATTGGTGGATTT+TGG | 0.116448 | 3.3:-90010279 | None:intergenic |
| GGCTTGGGATTATTTCTTTA+TGG | 0.126467 | 3.3:+90008180 | MS.gene073059:CDS |
| AAACTTGTTGCTCTTGTTAT+TGG | 0.151747 | 3.3:+90009409 | MS.gene073059:CDS |
| GCGCCATCTTCTCCTTCTTC+TGG | 0.159074 | 3.3:+90008112 | MS.gene073059:CDS |
| GGATTATTTCTTTATGGATA+TGG | 0.176860 | 3.3:+90008186 | MS.gene073059:CDS |
| CAAATTGTGACTCCCATTCT+TGG | 0.206075 | 3.3:-90010141 | None:intergenic |
| GCCTTCGCCGCCGGTCATTC+AGG | 0.243027 | 3.3:+90007761 | MS.gene073059:CDS |
| ATAACAAGAGCAACAAGTTT+TGG | 0.264787 | 3.3:-90009406 | None:intergenic |
| AGAAACACATGCCACTGTTT+TGG | 0.288622 | 3.3:+90008942 | MS.gene073059:CDS |
| GGTGAGAATGTTGATGTTAA+TGG | 0.289655 | 3.3:+90008274 | MS.gene073059:CDS |
| CCCTTCGTTGTAAATGCTTC+TGG | 0.304621 | 3.3:-90010489 | None:intergenic |
| CTCAACTTTCTCCGGTGTCT+TGG | 0.318035 | 3.3:-90008323 | None:intergenic |
| TTCTAATTTCGCTGATGGTC+GGG | 0.320744 | 3.3:+90008582 | MS.gene073059:CDS |
| ACAACTGAGAATCGCGAATA+TGG | 0.320972 | 3.3:-90009381 | None:intergenic |
| TCCAAAGGCGGTGGAGGTTT+AGG | 0.322625 | 3.3:-90007890 | None:intergenic |
| CGCCATCTTCTCCTTCTTCT+GGG | 0.323153 | 3.3:+90008113 | MS.gene073059:CDS |
| AACTTGTTGCTCTTGTTATT+GGG | 0.330220 | 3.3:+90009410 | MS.gene073059:CDS |
| GGAGGAAGAGATGAAGTTAA+AGG | 0.341872 | 3.3:+90010405 | MS.gene073059:CDS |
| TGAGGTTGATGTGTATAATA+AGG | 0.342260 | 3.3:+90008342 | MS.gene073059:CDS |
| TCCTAAACCTCCACCGCCTT+TGG | 0.343046 | 3.3:+90007889 | MS.gene073059:CDS |
| ATAATCCCAAGCCATGTTCT+TGG | 0.359746 | 3.3:-90008170 | None:intergenic |
| TGAGTTTAGAAGAGCAATTA+AGG | 0.371298 | 3.3:+90008441 | MS.gene073059:CDS |
| AGAGAAGCCGGTGAGAAATT+AGG | 0.374879 | 3.3:-90007944 | None:intergenic |
| TCAACTTTCTCCGGTGTCTT+GGG | 0.378191 | 3.3:-90008322 | None:intergenic |
| GGCGGAAGAGGCGGTGGAGG+AGG | 0.380266 | 3.3:-90007923 | None:intergenic |
| GAACATATTCTCCCACATAT+TGG | 0.386881 | 3.3:-90009999 | None:intergenic |
| GATGCCGCCACCGCCTTTGC+CGG | 0.392756 | 3.3:+90008144 | MS.gene073059:CDS |
| GCAGATTTCGCTAGCTCGTC+AGG | 0.404088 | 3.3:-90010337 | None:intergenic |
| ACGACCGCACCGTGCAGCTT+TGG | 0.406384 | 3.3:+90010110 | MS.gene073059:CDS |
| TGATATTTCTCAAGATCATA+AGG | 0.409383 | 3.3:+90010069 | MS.gene073059:CDS |
| GAAGAGGCGGTGGAGGAGGG+AGG | 0.409543 | 3.3:-90007919 | None:intergenic |
| GCTCGTAATGCCTTCGCCGC+CGG | 0.417087 | 3.3:+90007752 | MS.gene073059:CDS |
| GAGAAATATCAAGAGATTTG+AGG | 0.419497 | 3.3:-90010057 | None:intergenic |
| GAGAACTAAGAATCTGCATA+AGG | 0.420407 | 3.3:-90008480 | None:intergenic |
| TGAGCTCTTCCGCGCGCTAT+CGG | 0.425047 | 3.3:+90010681 | MS.gene073059:CDS |
| CTAAGATGCTTGAAGCTACT+AGG | 0.436626 | 3.3:+90008548 | MS.gene073059:CDS |
| ATCATCTCTTTCTAGATCAT+CGG | 0.445892 | 3.3:-90010515 | None:intergenic |
| CAAGCCATGTTCTTGGAATC+CGG | 0.447999 | 3.3:-90008163 | None:intergenic |
| GGTACCATTCTTCAAAAGCT+TGG | 0.451334 | 3.3:-90010468 | None:intergenic |
| TTGTTGAAGAGGTGGAAGAA+GGG | 0.456126 | 3.3:+90008050 | MS.gene073059:CDS |
| ATTCTAATTTCGCTGATGGT+CGG | 0.456595 | 3.3:+90008581 | MS.gene073059:CDS |
| CTTTCAGGATGGCCAATATG+TGG | 0.463738 | 3.3:+90009987 | MS.gene073059:intron |
| GATAGCGCGCGGAAGAGCTC+AGG | 0.466453 | 3.3:-90010679 | None:intergenic |
| ACAAACTGCTTCTCCGAGAT+CGG | 0.469741 | 3.3:-90010553 | None:intergenic |
| AAGATCGGCGGTGGAATTAG+TGG | 0.472783 | 3.3:+90008016 | MS.gene073059:CDS |
| TCATCTCTTTCTAGATCATC+GGG | 0.475608 | 3.3:-90010514 | None:intergenic |
| CGGATTCCAAGAACATGGCT+TGG | 0.478452 | 3.3:+90008164 | MS.gene073059:CDS |
| TATCATTCTAATTTCGCTGA+TGG | 0.478716 | 3.3:+90008577 | MS.gene073059:CDS |
| CATTCAAGGGTGTATCCAAT+GGG | 0.479178 | 3.3:+90008884 | MS.gene073059:CDS |
| ACATCCAAGCTCTTTATAGC+TGG | 0.481961 | 3.3:+90010191 | MS.gene073059:CDS |
| TTGGAATCCGGCAAAGGCGG+TGG | 0.482836 | 3.3:-90008151 | None:intergenic |
| TAAAGAAGGGCTTGGATTGG+TGG | 0.484719 | 3.3:-90010286 | None:intergenic |
| GGATTCCAAGAACATGGCTT+GGG | 0.486447 | 3.3:+90008165 | MS.gene073059:CDS |
| GAAATGTGAGGAAACTAGAA+AGG | 0.486729 | 3.3:+90010429 | MS.gene073059:CDS |
| ATTGTTGAAGAGGTGGAAGA+AGG | 0.490175 | 3.3:+90008049 | MS.gene073059:CDS |
| GATGAGATTGAGAATGAAGA+AGG | 0.491897 | 3.3:+90008241 | MS.gene073059:CDS |
| ATTGCCCACGCTCAAGGTGG+TGG | 0.492952 | 3.3:+90010748 | MS.gene073059:CDS |
| TTTGGAATGTAATCCAAGAA+TGG | 0.494175 | 3.3:+90010128 | MS.gene073059:CDS |
| TTAGGCGGAAGAGGCGGTGG+AGG | 0.494227 | 3.3:-90007926 | None:intergenic |
| GAATCCGGCAAAGGCGGTGG+CGG | 0.494775 | 3.3:-90008148 | None:intergenic |
| ATTGCTCTTCTAAACTCAGC+AGG | 0.495940 | 3.3:-90008436 | None:intergenic |
| GGCGCCAGTGTTGAATCATT+AGG | 0.496446 | 3.3:+90009274 | MS.gene073059:CDS |
| TTGGAATGTAATCCAAGAAT+GGG | 0.497192 | 3.3:+90010129 | MS.gene073059:CDS |
| CAGTTACAGCACCGCAAGAT+CGG | 0.497409 | 3.3:+90008001 | MS.gene073059:CDS |
| GGGAAGAGGTTCTTTGAATG+AGG | 0.498151 | 3.3:+90008216 | MS.gene073059:CDS |
| TCTAATTTCGCTGATGGTCG+GGG | 0.499933 | 3.3:+90008583 | MS.gene073059:CDS |
| AGAACTAAGAATCTGCATAA+GGG | 0.500689 | 3.3:-90008479 | None:intergenic |
| ACCTGAATGACCGGCGGCGA+AGG | 0.502395 | 3.3:-90007762 | None:intergenic |
| AAATTAGGCGGAAGAGGCGG+TGG | 0.507309 | 3.3:-90007929 | None:intergenic |
| GATTCTTCCAAAGGCGGTGG+AGG | 0.508145 | 3.3:-90007896 | None:intergenic |
| TGCAAGTGATAACATGGAAT+CGG | 0.508476 | 3.3:+90008860 | MS.gene073059:CDS |
| GCGGAAGAGGCGGTGGAGGA+GGG | 0.508892 | 3.3:-90007922 | None:intergenic |
| TTTATGGATATGGATAATAT+GGG | 0.509779 | 3.3:+90008196 | MS.gene073059:CDS |
| AATCATGCCATGCATAAAGA+AGG | 0.514400 | 3.3:-90010300 | None:intergenic |
| TCTTGTGTGTAAATGACTTA+CGG | 0.517302 | 3.3:-90009311 | None:intergenic |
| AAAGACGATCATACTTCAGC+AGG | 0.518195 | 3.3:+90010384 | MS.gene073059:CDS |
| CAGCACCGCAAGATCGGCGG+TGG | 0.518911 | 3.3:+90008007 | MS.gene073059:CDS |
| CGGTCATTCAGGTTATGCTA+TGG | 0.522813 | 3.3:+90007772 | MS.gene073059:CDS |
| GGTGAGAAATTAGGCGGAAG+AGG | 0.523496 | 3.3:-90007935 | None:intergenic |
| TGAGCCAGCTATAAAGAGCT+TGG | 0.525015 | 3.3:-90010195 | None:intergenic |
| GAAGGAGAAGATGGCGCGTG+AGG | 0.530503 | 3.3:-90008106 | None:intergenic |
| ACATCAACCTCAACTTTCTC+CGG | 0.530753 | 3.3:-90008331 | None:intergenic |
| TCATTCAAGGGTGTATCCAA+TGG | 0.533090 | 3.3:+90008883 | MS.gene073059:CDS |
| TCCAAGCCCTTCTTTATGCA+TGG | 0.533581 | 3.3:+90010293 | MS.gene073059:CDS |
| CTCCCAGAAGAAGGAGAAGA+TGG | 0.534623 | 3.3:-90008115 | None:intergenic |
| AAGTCGATTGCCCACGCTCA+AGG | 0.535916 | 3.3:+90010742 | MS.gene073059:CDS |
| AACATGGAATCGGTCATTCA+AGG | 0.539680 | 3.3:+90008870 | MS.gene073059:CDS |
| GGTGTATCCAATGGGGAGGG+TGG | 0.541152 | 3.3:+90008892 | MS.gene073059:CDS |
| GCCATGCATAAAGAAGGGCT+TGG | 0.543280 | 3.3:-90010294 | None:intergenic |
| CTTTATCACTGCAGAAAATG+AGG | 0.543457 | 3.3:-90010365 | None:intergenic |
| ATCACTTTACTCCCAGAAGA+AGG | 0.544452 | 3.3:-90008124 | None:intergenic |
| GATATGGATAATATGGGAAG+AGG | 0.547615 | 3.3:+90008202 | MS.gene073059:CDS |
| GGCGGTGGAATTAGTGGTGG+AGG | 0.549912 | 3.3:+90008022 | MS.gene073059:CDS |
| CCAGAAGCATTTACAACGAA+GGG | 0.551600 | 3.3:+90010489 | MS.gene073059:CDS |
| ACAGAGCGTTTGAGAGAAGC+CGG | 0.551771 | 3.3:-90007956 | None:intergenic |
| GGATCAGAATGAAGAGGCGG+TGG | 0.555414 | 3.3:-90007869 | None:intergenic |
| TTTGGACAAGTTGTTAGCAT+GGG | 0.555933 | 3.3:+90008960 | MS.gene073059:CDS |
| GCATAAAGAAGGGCTTGGAT+TGG | 0.556125 | 3.3:-90010289 | None:intergenic |
| AAGAGGCGGTGGAGGAGGGA+GGG | 0.557539 | 3.3:-90007918 | None:intergenic |
| TAATTCCACCGCCGATCTTG+CGG | 0.558644 | 3.3:-90008012 | None:intergenic |
| CATAGCATAACCTGAATGAC+CGG | 0.563400 | 3.3:-90007771 | None:intergenic |
| TGCTGTAACTGCAACGACAC+AGG | 0.563887 | 3.3:-90007989 | None:intergenic |
| AAATACAAACAATCCGATCT+CGG | 0.564703 | 3.3:+90010540 | MS.gene073059:CDS |
| ACATGGAATCGGTCATTCAA+GGG | 0.566506 | 3.3:+90008871 | MS.gene073059:CDS |
| TTCTTGGAATCCGGCAAAGG+CGG | 0.566851 | 3.3:-90008154 | None:intergenic |
| AGGGATTCTTCCAAAGGCGG+TGG | 0.573076 | 3.3:-90007899 | None:intergenic |
| AGTTTCGCCGTGAGCGTAGT+CGG | 0.573795 | 3.3:-90007822 | None:intergenic |
| TTTCAGGATGGCCAATATGT+GGG | 0.579247 | 3.3:+90009988 | MS.gene073059:intron |
| AATGAAGAAGGTGAAATTGA+AGG | 0.580423 | 3.3:+90008253 | MS.gene073059:CDS |
| TATTGTTGATATGCAGTCGA+TGG | 0.581443 | 3.3:+90009336 | MS.gene073059:CDS |
| GAAGAGGTGGAAGAAGGGAA+AGG | 0.581945 | 3.3:+90008055 | MS.gene073059:CDS |
| GGGAAAGGCGGTGATGCTGA+TGG | 0.584993 | 3.3:+90008070 | MS.gene073059:CDS |
| TGGAGGTGACATTGTTGAAG+AGG | 0.585814 | 3.3:+90008039 | MS.gene073059:CDS |
| GAAACTCTATGAAGAAGTCA+AGG | 0.586792 | 3.3:+90008987 | MS.gene073059:CDS |
| CGCACCACCACCTTGAGCGT+GGG | 0.587071 | 3.3:-90010752 | None:intergenic |
| GAGGTGGAAGAAGGGAAAGG+CGG | 0.588013 | 3.3:+90008058 | MS.gene073059:CDS |
| CCGCACCACCACCTTGAGCG+TGG | 0.589202 | 3.3:-90010753 | None:intergenic |
| GTAGTCGGAGAGAGCGGCGC+CGG | 0.592343 | 3.3:-90007807 | None:intergenic |
| GAGTCATGCAAGTGATAACA+TGG | 0.593246 | 3.3:+90008854 | MS.gene073059:CDS |
| CAGAAGCATTTACAACGAAG+GGG | 0.593582 | 3.3:+90010490 | MS.gene073059:CDS |
| AGGTGACATTGTTGAAGAGG+TGG | 0.593877 | 3.3:+90008042 | MS.gene073059:CDS |
| GGTGCGGTCGTAATGATGCT+TGG | 0.594455 | 3.3:-90010098 | None:intergenic |
| GGACTCAACAGTTTCTGAAG+TGG | 0.596338 | 3.3:+90009357 | MS.gene073059:CDS |
| CCACGCTCAAGGTGGTGGTG+CGG | 0.602808 | 3.3:+90010753 | MS.gene073059:CDS |
| ATGTTCTTGGAATCCGGCAA+AGG | 0.605757 | 3.3:-90008157 | None:intergenic |
| TCTTCCGCCTAATTTCTCAC+CGG | 0.608905 | 3.3:+90007937 | MS.gene073059:CDS |
| ATCATGCCATGCATAAAGAA+GGG | 0.611365 | 3.3:-90010299 | None:intergenic |
| GAAGTTAAAGGAGAAATGTG+AGG | 0.611782 | 3.3:+90010417 | MS.gene073059:CDS |
| AAACTAGAAAGGAATTCTTG+AGG | 0.618185 | 3.3:+90010440 | MS.gene073059:CDS |
| GGAGGGAGGGATTCTTCCAA+AGG | 0.620699 | 3.3:-90007905 | None:intergenic |
| CAAGGGTGTATCCAATGGGG+AGG | 0.622313 | 3.3:+90008888 | MS.gene073059:CDS |
| GCTCTCTCCGACTACGCTCA+CGG | 0.622545 | 3.3:+90007815 | MS.gene073059:CDS |
| ATCTGCATAAGGGTAACAGA+AGG | 0.622988 | 3.3:-90008469 | None:intergenic |
| ACCAGAAGCATTTACAACGA+AGG | 0.625698 | 3.3:+90010488 | MS.gene073059:CDS |
| CTGAACAAGCAGAAGAAGCG+TGG | 0.626103 | 3.3:+90009253 | MS.gene073059:CDS |
| TTTGCCGGATTCCAAGAACA+TGG | 0.627689 | 3.3:+90008159 | MS.gene073059:CDS |
| GACGATCATACTTCAGCAGG+AGG | 0.629306 | 3.3:+90010387 | MS.gene073059:CDS |
| ATCGGCGGTGGAATTAGTGG+TGG | 0.630858 | 3.3:+90008019 | MS.gene073059:CDS |
| TGAGATTGAACCCAAGACAC+CGG | 0.633573 | 3.3:+90008312 | MS.gene073059:CDS |
| GGAGCATGAACATGTACATG+AGG | 0.635866 | 3.3:+90008363 | MS.gene073059:CDS |
| GATTACATTCCAAAGCTGCA+CGG | 0.636378 | 3.3:-90010119 | None:intergenic |
| CAAGACACCGGAGAAAGTTG+AGG | 0.641109 | 3.3:+90008324 | MS.gene073059:CDS |
| TGAGGATGATGTGATAAGAG+AGG | 0.648109 | 3.3:+90008381 | MS.gene073059:CDS |
| GGCGGCGAAGGCATTACGAG+CGG | 0.649430 | 3.3:-90007750 | None:intergenic |
| GTGAGCGTAGTCGGAGAGAG+CGG | 0.649810 | 3.3:-90007813 | None:intergenic |
| GAGAAATTAGGCGGAAGAGG+CGG | 0.650849 | 3.3:-90007932 | None:intergenic |
| GGTTTAGGATCAGAATGAAG+AGG | 0.652248 | 3.3:-90007875 | None:intergenic |
| TTACAGCACCGCAAGATCGG+CGG | 0.652795 | 3.3:+90008004 | MS.gene073059:CDS |
| GAGAATGTTGATGTTAATGG+AGG | 0.660500 | 3.3:+90008277 | MS.gene073059:CDS |
| TGATGTTAATGGAGGACATG+TGG | 0.660982 | 3.3:+90008285 | MS.gene073059:CDS |
| AAGGGTGTATCCAATGGGGA+GGG | 0.663838 | 3.3:+90008889 | MS.gene073059:CDS |
| TGTTAATGGAGGACATGTGG+AGG | 0.675457 | 3.3:+90008288 | MS.gene073059:CDS |
| CATTCCAAAGCTGCACGGTG+CGG | 0.678361 | 3.3:-90010114 | None:intergenic |
| GAAGCCGGTGAGAAATTAGG+CGG | 0.684519 | 3.3:-90007941 | None:intergenic |
| GGGAGGGATTCTTCCAAAGG+CGG | 0.689716 | 3.3:-90007902 | None:intergenic |
| GTTTAGAAGAGCAATTAAGG+TGG | 0.690000 | 3.3:+90008444 | MS.gene073059:CDS |
| GAGTATAATCCGATAGCGCG+CGG | 0.690717 | 3.3:-90010690 | None:intergenic |
| TGTAACTGCAACGACACAGG+CGG | 0.699824 | 3.3:-90007986 | None:intergenic |
| AGAAGCATTTACAACGAAGG+GGG | 0.702303 | 3.3:+90010491 | MS.gene073059:CDS |
| TTAGGATCAGAATGAAGAGG+CGG | 0.705551 | 3.3:-90007872 | None:intergenic |
| AGCATAACCTGAATGACCGG+CGG | 0.709251 | 3.3:-90007768 | None:intergenic |
| TCGATTGCCCACGCTCAAGG+TGG | 0.713047 | 3.3:+90010745 | MS.gene073059:CDS |
| TAACAACTTGTCCAAAACAG+TGG | 0.715371 | 3.3:-90008953 | None:intergenic |
| ATTCAAGGGTGTATCCAATG+GGG | 0.730624 | 3.3:+90008885 | MS.gene073059:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTATAAAATTGTAAG+TGG | + | chr3.3:90009674-90009693 | MS.gene073059:intron | 15.0% |
| !! | TACAACATTAAAATAAACTT+CGG | - | chr3.3:90009787-90009806 | None:intergenic | 15.0% |
| !!! | CAATAAGTGAAATTTTAAAA+AGG | - | chr3.3:90009181-90009200 | None:intergenic | 15.0% |
| !! | ACTGAAGTTGAATAAAATAA+AGG | - | chr3.3:90008635-90008654 | None:intergenic | 20.0% |
| !! | TTTATGGATATGGATAATAT+GGG | + | chr3.3:90008196-90008215 | MS.gene073059:CDS | 20.0% |
| !!! | ATAATAAAATGCTTTTCGAT+TGG | - | chr3.3:90009706-90009725 | None:intergenic | 20.0% |
| !!! | CAACTAGAGTTTTAAAAAAA+AGG | - | chr3.3:90008740-90008759 | None:intergenic | 20.0% |
| !!! | GAAAGTATAAATGTCAAAAA+TGG | - | chr3.3:90009026-90009045 | None:intergenic | 20.0% |
| !!! | TAATAAAATGCTTTTCGATT+GGG | - | chr3.3:90009705-90009724 | None:intergenic | 20.0% |
| !!! | TAGAATATATTTTGCAACAT+CGG | - | chr3.3:90009662-90009681 | None:intergenic | 20.0% |
| ! | ATCATTAGGAAAAACTAAAG+CGG | + | chr3.3:90009288-90009307 | MS.gene073059:CDS | 25.0% |
| ! | CAAATATAGATTGAGAATCT+AGG | - | chr3.3:90009740-90009759 | None:intergenic | 25.0% |
| ! | CTTTATGGATATGGATAATA+TGG | + | chr3.3:90008195-90008214 | MS.gene073059:CDS | 25.0% |
| ! | TAAAATAAACTTCGGTATCT+AGG | - | chr3.3:90009779-90009798 | None:intergenic | 25.0% |
| ! | TGATATTTCTCAAGATCATA+AGG | + | chr3.3:90010069-90010088 | MS.gene073059:CDS | 25.0% |
| ! | TGATGCAAAAAATAGAAACT+TGG | - | chr3.3:90009921-90009940 | None:intergenic | 25.0% |
| !! | GGATTATTTCTTTATGGATA+TGG | + | chr3.3:90008186-90008205 | MS.gene073059:CDS | 25.0% |
| !!! | GAGTTTTAAAAAAAAGGTCT+AGG | - | chr3.3:90008734-90008753 | None:intergenic | 25.0% |
| !!! | TCTATTTTTTGCATCACAAA+TGG | + | chr3.3:90009925-90009944 | MS.gene073059:intron | 25.0% |
| !!! | TTTTCAATTTGTTCTGGTAT+TGG | + | chr3.3:90009853-90009872 | MS.gene073059:intron | 25.0% |
| AAACTAGAAAGGAATTCTTG+AGG | + | chr3.3:90010440-90010459 | MS.gene073059:CDS | 30.0% | |
| AAAGCTAACTAACAAGATGA+AGG | - | chr3.3:90009048-90009067 | None:intergenic | 30.0% | |
| AAATACAAACAATCCGATCT+CGG | + | chr3.3:90010540-90010559 | MS.gene073059:CDS | 30.0% | |
| AATGAAGAAGGTGAAATTGA+AGG | + | chr3.3:90008253-90008272 | MS.gene073059:CDS | 30.0% | |
| ACCAGAACAAATTGAAAACT+AGG | - | chr3.3:90009851-90009870 | None:intergenic | 30.0% | |
| AGAACTAAGAATCTGCATAA+GGG | - | chr3.3:90008482-90008501 | None:intergenic | 30.0% | |
| ATAGAAACTTGGTACTTGAT+TGG | - | chr3.3:90009910-90009929 | None:intergenic | 30.0% | |
| ATCATCTCTTTCTAGATCAT+CGG | - | chr3.3:90010518-90010537 | None:intergenic | 30.0% | |
| CAATTTGGATAATGACATCA+AGG | - | chr3.3:90008707-90008726 | None:intergenic | 30.0% | |
| CTAACATTCAAGACTAATTC+AGG | - | chr3.3:90009616-90009635 | None:intergenic | 30.0% | |
| CTAAGATATCAAATAAGCAC+AGG | - | chr3.3:90009478-90009497 | None:intergenic | 30.0% | |
| GAATCTACTTGATTTCTTTC+AGG | + | chr3.3:90009972-90009991 | MS.gene073059:intron | 30.0% | |
| GAGAAATATCAAGAGATTTG+AGG | - | chr3.3:90010060-90010079 | None:intergenic | 30.0% | |
| GTGCTTATTTGATATCTTAG+TGG | + | chr3.3:90009478-90009497 | MS.gene073059:intron | 30.0% | |
| TATCATTCTAATTTCGCTGA+TGG | + | chr3.3:90008577-90008596 | MS.gene073059:CDS | 30.0% | |
| TCAAGTAGATTCATGAATCA+TGG | - | chr3.3:90009964-90009983 | None:intergenic | 30.0% | |
| TCTTGTGTGTAAATGACTTA+CGG | - | chr3.3:90009314-90009333 | None:intergenic | 30.0% | |
| TGAGTTTAGAAGAGCAATTA+AGG | + | chr3.3:90008441-90008460 | MS.gene073059:CDS | 30.0% | |
| TGATGTCATTATCCAAATTG+CGG | + | chr3.3:90008707-90008726 | MS.gene073059:intron | 30.0% | |
| TGTAAAGTGACACGATTATT+AGG | - | chr3.3:90009818-90009837 | None:intergenic | 30.0% | |
| TTGGAATGTAATCCAAGAAT+GGG | + | chr3.3:90010129-90010148 | MS.gene073059:CDS | 30.0% | |
| ! | ATAACAAGAGCAACAAGTTT+TGG | - | chr3.3:90009409-90009428 | None:intergenic | 30.0% |
| ! | TTGGTGTGTTAGCAAAATTT+TGG | - | chr3.3:90009891-90009910 | None:intergenic | 30.0% |
| ! | TTGGTTAAAGGAAGTTTTCA+AGG | - | chr3.3:90009563-90009582 | None:intergenic | 30.0% |
| ! | TTTGGAATGTAATCCAAGAA+TGG | + | chr3.3:90010128-90010147 | MS.gene073059:CDS | 30.0% |
| ! | TTTTCCTAATGATTCAACAC+TGG | - | chr3.3:90009281-90009300 | None:intergenic | 30.0% |
| !! | AAAACCAAGCTTTTGAAGAA+TGG | + | chr3.3:90010464-90010483 | MS.gene073059:CDS | 30.0% |
| !! | AAACTTGTTGCTCTTGTTAT+TGG | + | chr3.3:90009409-90009428 | MS.gene073059:CDS | 30.0% |
| !! | AACTTGTTGCTCTTGTTATT+GGG | + | chr3.3:90009410-90009429 | MS.gene073059:CDS | 30.0% |
| !! | TAACTTGTTGCTCTTAATGA+GGG | + | chr3.3:90009151-90009170 | MS.gene073059:intron | 30.0% |
| !! | TCCTAGTTTTCAATTTGTTC+TGG | + | chr3.3:90009847-90009866 | MS.gene073059:intron | 30.0% |
| !! | TGAGGTTGATGTGTATAATA+AGG | + | chr3.3:90008342-90008361 | MS.gene073059:CDS | 30.0% |
| !!! | GAGACGAGATTTTTTCTTTT+AGG | - | chr3.3:90010249-90010268 | None:intergenic | 30.0% |
| !!! | GTTTAAGGTTTTTAGTTAGC+TGG | + | chr3.3:90008766-90008785 | MS.gene073059:intron | 30.0% |
| AATCATGCCATGCATAAAGA+AGG | - | chr3.3:90010303-90010322 | None:intergenic | 35.0% | |
| ATCATGCCATGCATAAAGAA+GGG | - | chr3.3:90010302-90010321 | None:intergenic | 35.0% | |
| ATTCTAATTTCGCTGATGGT+CGG | + | chr3.3:90008581-90008600 | MS.gene073059:CDS | 35.0% | |
| CTACTTGATTTCTTTCAGGA+TGG | + | chr3.3:90009976-90009995 | MS.gene073059:intron | 35.0% | |
| CTCTAGTTGTGTGAAGTTTA+AGG | + | chr3.3:90008751-90008770 | MS.gene073059:intron | 35.0% | |
| CTTTATCACTGCAGAAAATG+AGG | - | chr3.3:90010368-90010387 | None:intergenic | 35.0% | |
| GAAACTCTATGAAGAAGTCA+AGG | + | chr3.3:90008987-90009006 | MS.gene073059:CDS | 35.0% | |
| GAAATGTGAGGAAACTAGAA+AGG | + | chr3.3:90010429-90010448 | MS.gene073059:CDS | 35.0% | |
| GAACATATTCTCCCACATAT+TGG | - | chr3.3:90010002-90010021 | None:intergenic | 35.0% | |
| GAAGTTAAAGGAGAAATGTG+AGG | + | chr3.3:90010417-90010436 | MS.gene073059:CDS | 35.0% | |
| GAGAACTAAGAATCTGCATA+AGG | - | chr3.3:90008483-90008502 | None:intergenic | 35.0% | |
| GAGAATGTTGATGTTAATGG+AGG | + | chr3.3:90008277-90008296 | MS.gene073059:CDS | 35.0% | |
| GATATGGATAATATGGGAAG+AGG | + | chr3.3:90008202-90008221 | MS.gene073059:CDS | 35.0% | |
| GATGAGATTGAGAATGAAGA+AGG | + | chr3.3:90008241-90008260 | MS.gene073059:CDS | 35.0% | |
| GGTGAGAATGTTGATGTTAA+TGG | + | chr3.3:90008274-90008293 | MS.gene073059:CDS | 35.0% | |
| GTCCTAAATTTCATGCTTGT+TGG | + | chr3.3:90009590-90009609 | MS.gene073059:intron | 35.0% | |
| GTTTAGAAGAGCAATTAAGG+TGG | + | chr3.3:90008444-90008463 | MS.gene073059:CDS | 35.0% | |
| TAACAACTTGTCCAAAACAG+TGG | - | chr3.3:90008956-90008975 | None:intergenic | 35.0% | |
| TATTGTTGATATGCAGTCGA+TGG | + | chr3.3:90009336-90009355 | MS.gene073059:CDS | 35.0% | |
| TCATCTCTTTCTAGATCATC+GGG | - | chr3.3:90010517-90010536 | None:intergenic | 35.0% | |
| TGCAAGTGATAACATGGAAT+CGG | + | chr3.3:90008860-90008879 | MS.gene073059:CDS | 35.0% | |
| TTTGGACAAGTTGTTAGCAT+GGG | + | chr3.3:90008960-90008979 | MS.gene073059:CDS | 35.0% | |
| ! | ATATCTCTTTGACTTCCCAT+TGG | - | chr3.3:90009445-90009464 | None:intergenic | 35.0% |
| ! | ATTGGGTAAGTATTGCCAAT+GGG | + | chr3.3:90009427-90009446 | MS.gene073059:intron | 35.0% |
| ! | CTTCACGCATTAAGTTTTTG+CGG | - | chr3.3:90007724-90007743 | None:intergenic | 35.0% |
| ! | GAAATTTAGGACGTTGTCAT+TGG | - | chr3.3:90009582-90009601 | None:intergenic | 35.0% |
| ! | GGCTTGGGATTATTTCTTTA+TGG | + | chr3.3:90008180-90008199 | MS.gene073059:CDS | 35.0% |
| ! | TATTGGGTAAGTATTGCCAA+TGG | + | chr3.3:90009426-90009445 | MS.gene073059:intron | 35.0% |
| ! | TGATTTGCAATGACATTAGC+AGG | + | chr3.3:90008811-90008830 | MS.gene073059:intron | 35.0% |
| ! | TTTTGGACAAGTTGTTAGCA+TGG | + | chr3.3:90008959-90008978 | MS.gene073059:CDS | 35.0% |
| !! | GTAACTTGTTGCTCTTAATG+AGG | + | chr3.3:90009150-90009169 | MS.gene073059:intron | 35.0% |
| !! | GTTTTCAAGGAAGTTCACAA+CGG | - | chr3.3:90009550-90009569 | None:intergenic | 35.0% |
| !!! | GTGACCAAAGTTTTAAATCG+CGG | + | chr3.3:90008669-90008688 | MS.gene073059:intron | 35.0% |
| !!! | TCTTTTAGGTTGCTTTCGAT+GGG | - | chr3.3:90010235-90010254 | None:intergenic | 35.0% |
| !!! | TGACCAAAGTTTTAAATCGC+GGG | + | chr3.3:90008670-90008689 | MS.gene073059:intron | 35.0% |
| !!! | TTCTTTTAGGTTGCTTTCGA+TGG | - | chr3.3:90010236-90010255 | None:intergenic | 35.0% |
| AAAGACGATCATACTTCAGC+AGG | + | chr3.3:90010384-90010403 | MS.gene073059:CDS | 40.0% | |
| AACATGGAATCGGTCATTCA+AGG | + | chr3.3:90008870-90008889 | MS.gene073059:CDS | 40.0% | |
| ACAACTGAGAATCGCGAATA+TGG | - | chr3.3:90009384-90009403 | None:intergenic | 40.0% | |
| ACATCAACCTCAACTTTCTC+CGG | - | chr3.3:90008334-90008353 | None:intergenic | 40.0% | |
| ACATCCAAGCTCTTTATAGC+TGG | + | chr3.3:90010191-90010210 | MS.gene073059:CDS | 40.0% | |
| ACATGGAATCGGTCATTCAA+GGG | + | chr3.3:90008871-90008890 | MS.gene073059:CDS | 40.0% | |
| ATAATCCCAAGCCATGTTCT+TGG | - | chr3.3:90008173-90008192 | None:intergenic | 40.0% | |
| ATCACTTTACTCCCAGAAGA+AGG | - | chr3.3:90008127-90008146 | None:intergenic | 40.0% | |
| ATCTGCATAAGGGTAACAGA+AGG | - | chr3.3:90008472-90008491 | None:intergenic | 40.0% | |
| ATTGCTCTTCTAAACTCAGC+AGG | - | chr3.3:90008439-90008458 | None:intergenic | 40.0% | |
| ATTGTTGAAGAGGTGGAAGA+AGG | + | chr3.3:90008049-90008068 | MS.gene073059:CDS | 40.0% | |
| CAAATTGTGACTCCCATTCT+TGG | - | chr3.3:90010144-90010163 | None:intergenic | 40.0% | |
| CATAGCATAACCTGAATGAC+CGG | - | chr3.3:90007774-90007793 | None:intergenic | 40.0% | |
| CTAAGATGCTTGAAGCTACT+AGG | + | chr3.3:90008548-90008567 | MS.gene073059:CDS | 40.0% | |
| GAGTCATGCAAGTGATAACA+TGG | + | chr3.3:90008854-90008873 | MS.gene073059:CDS | 40.0% | |
| GATTACATTCCAAAGCTGCA+CGG | - | chr3.3:90010122-90010141 | None:intergenic | 40.0% | |
| GGAGGAAGAGATGAAGTTAA+AGG | + | chr3.3:90010405-90010424 | MS.gene073059:CDS | 40.0% | |
| GGCCAACAAGCATGAAATTT+AGG | - | chr3.3:90009595-90009614 | None:intergenic | 40.0% | |
| GGTACCATTCTTCAAAAGCT+TGG | - | chr3.3:90010471-90010490 | None:intergenic | 40.0% | |
| TAGAAAACACGACAGTACAG+TGG | - | chr3.3:90009098-90009117 | None:intergenic | 40.0% | |
| TGAGGATGATGTGATAAGAG+AGG | + | chr3.3:90008381-90008400 | MS.gene073059:CDS | 40.0% | |
| TGATGTTAATGGAGGACATG+TGG | + | chr3.3:90008285-90008304 | MS.gene073059:CDS | 40.0% | |
| TTAGCTGGAATTGACATGCA+AGG | + | chr3.3:90008781-90008800 | MS.gene073059:intron | 40.0% | |
| TTAGGATCAGAATGAAGAGG+CGG | - | chr3.3:90007875-90007894 | None:intergenic | 40.0% | |
| TTCACTTATTGTCGACAGCA+AGG | + | chr3.3:90009190-90009209 | MS.gene073059:intron | 40.0% | |
| TTCTAATTTCGCTGATGGTC+GGG | + | chr3.3:90008582-90008601 | MS.gene073059:CDS | 40.0% | |
| TTGTTGAAGAGGTGGAAGAA+GGG | + | chr3.3:90008050-90008069 | MS.gene073059:CDS | 40.0% | |
| TTTCAGGATGGCCAATATGT+GGG | + | chr3.3:90009988-90010007 | MS.gene073059:intron | 40.0% | |
| ! | AGAAACACATGCCACTGTTT+TGG | + | chr3.3:90008942-90008961 | MS.gene073059:CDS | 40.0% |
| ! | AGGACGTTGTCATTGGTTAA+AGG | - | chr3.3:90009575-90009594 | None:intergenic | 40.0% |
| ! | ATTCAAGGGTGTATCCAATG+GGG | + | chr3.3:90008885-90008904 | MS.gene073059:CDS | 40.0% |
| ! | CATTCAAGGGTGTATCCAAT+GGG | + | chr3.3:90008884-90008903 | MS.gene073059:CDS | 40.0% |
| ! | GGTCTGTAACTATTTTCAGC+TGG | - | chr3.3:90010039-90010058 | None:intergenic | 40.0% |
| ! | GGTTTAGGATCAGAATGAAG+AGG | - | chr3.3:90007878-90007897 | None:intergenic | 40.0% |
| ! | TCATTCAAGGGTGTATCCAA+TGG | + | chr3.3:90008883-90008902 | MS.gene073059:CDS | 40.0% |
| ! | TTGCAACATCGGTTACTACT+AGG | - | chr3.3:90009651-90009670 | None:intergenic | 40.0% |
| !! | ACCAGAAGCATTTACAACGA+AGG | + | chr3.3:90010488-90010507 | MS.gene073059:CDS | 40.0% |
| !! | AGAAGCATTTACAACGAAGG+GGG | + | chr3.3:90010491-90010510 | MS.gene073059:CDS | 40.0% |
| !! | CAGAAGCATTTACAACGAAG+GGG | + | chr3.3:90010490-90010509 | MS.gene073059:CDS | 40.0% |
| !! | CCAGAAGCATTTACAACGAA+GGG | + | chr3.3:90010489-90010508 | MS.gene073059:CDS | 40.0% |
| ACAAACTGCTTCTCCGAGAT+CGG | - | chr3.3:90010556-90010575 | None:intergenic | 45.0% | |
| AGAGAAGCCGGTGAGAAATT+AGG | - | chr3.3:90007947-90007966 | None:intergenic | 45.0% | |
| AGGTGACATTGTTGAAGAGG+TGG | + | chr3.3:90008042-90008061 | MS.gene073059:CDS | 45.0% | |
| ATCGGTTACTACTAGGATGC+TGG | - | chr3.3:90009644-90009663 | None:intergenic | 45.0% | |
| ATGTTCTTGGAATCCGGCAA+AGG | - | chr3.3:90008160-90008179 | None:intergenic | 45.0% | |
| CAAGCCATGTTCTTGGAATC+CGG | - | chr3.3:90008166-90008185 | None:intergenic | 45.0% | |
| CCCTTCGTTGTAAATGCTTC+TGG | - | chr3.3:90010492-90010511 | None:intergenic | 45.0% | |
| CTTTCAGGATGGCCAATATG+TGG | + | chr3.3:90009987-90010006 | MS.gene073059:intron | 45.0% | |
| GCATAAAGAAGGGCTTGGAT+TGG | - | chr3.3:90010292-90010311 | None:intergenic | 45.0% | |
| GCTATGGCTCTCAAAAACAC+CGG | + | chr3.3:90007788-90007807 | MS.gene073059:CDS | 45.0% | |
| GGAATTGACATGCAAGGTTG+AGG | + | chr3.3:90008787-90008806 | MS.gene073059:intron | 45.0% | |
| GGAGCATGAACATGTACATG+AGG | + | chr3.3:90008363-90008382 | MS.gene073059:CDS | 45.0% | |
| GGATTCCAAGAACATGGCTT+GGG | + | chr3.3:90008165-90008184 | MS.gene073059:CDS | 45.0% | |
| GGGAAGAGGTTCTTTGAATG+AGG | + | chr3.3:90008216-90008235 | MS.gene073059:CDS | 45.0% | |
| TCAACTTTCTCCGGTGTCTT+GGG | - | chr3.3:90008325-90008344 | None:intergenic | 45.0% | |
| TCCAAGCCCTTCTTTATGCA+TGG | + | chr3.3:90010293-90010312 | MS.gene073059:CDS | 45.0% | |
| TCTAATTTCGCTGATGGTCG+GGG | + | chr3.3:90008583-90008602 | MS.gene073059:CDS | 45.0% | |
| TCTTCCGCCTAATTTCTCAC+CGG | + | chr3.3:90007937-90007956 | MS.gene073059:CDS | 45.0% | |
| TGAGATTGAACCCAAGACAC+CGG | + | chr3.3:90008312-90008331 | MS.gene073059:CDS | 45.0% | |
| TGAGCCAGCTATAAAGAGCT+TGG | - | chr3.3:90010198-90010217 | None:intergenic | 45.0% | |
| TGGAGGTGACATTGTTGAAG+AGG | + | chr3.3:90008039-90008058 | MS.gene073059:CDS | 45.0% | |
| TGTTAATGGAGGACATGTGG+AGG | + | chr3.3:90008288-90008307 | MS.gene073059:CDS | 45.0% | |
| TTTGCCGGATTCCAAGAACA+TGG | + | chr3.3:90008159-90008178 | MS.gene073059:CDS | 45.0% | |
| ! | AAAGGTCTAGGACCGCAATT+TGG | - | chr3.3:90008722-90008741 | None:intergenic | 45.0% |
| ! | CGGTCATTCAGGTTATGCTA+TGG | + | chr3.3:90007772-90007791 | MS.gene073059:CDS | 45.0% |
| ! | GGACTCAACAGTTTCTGAAG+TGG | + | chr3.3:90009357-90009376 | MS.gene073059:CDS | 45.0% |
| ! | GTGCCCGCGATTTAAAACTT+TGG | - | chr3.3:90008676-90008695 | None:intergenic | 45.0% |
| ! | TAAAGAAGGGCTTGGATTGG+TGG | - | chr3.3:90010289-90010308 | None:intergenic | 45.0% |
| !!! | ATTGGTGGATTTTGGGCTCT+TGG | - | chr3.3:90010274-90010293 | None:intergenic | 45.0% |
| !!! | GGCTTGGATTGGTGGATTTT+GGG | - | chr3.3:90010281-90010300 | None:intergenic | 45.0% |
| AAGATCGGCGGTGGAATTAG+TGG | + | chr3.3:90008016-90008035 | MS.gene073059:CDS | 50.0% | |
| AGCATAACCTGAATGACCGG+CGG | - | chr3.3:90007771-90007790 | None:intergenic | 50.0% | |
| CAAGACACCGGAGAAAGTTG+AGG | + | chr3.3:90008324-90008343 | MS.gene073059:CDS | 50.0% | |
| CAGTTACAGCACCGCAAGAT+CGG | + | chr3.3:90008001-90008020 | MS.gene073059:CDS | 50.0% | |
| CGCCATCTTCTCCTTCTTCT+GGG | + | chr3.3:90008113-90008132 | MS.gene073059:CDS | 50.0% | |
| CGGATTCCAAGAACATGGCT+TGG | + | chr3.3:90008164-90008183 | MS.gene073059:CDS | 50.0% | |
| CTCAACTTTCTCCGGTGTCT+TGG | - | chr3.3:90008326-90008345 | None:intergenic | 50.0% | |
| CTCCCAGAAGAAGGAGAAGA+TGG | - | chr3.3:90008118-90008137 | None:intergenic | 50.0% | |
| CTGAACAAGCAGAAGAAGCG+TGG | + | chr3.3:90009253-90009272 | MS.gene073059:CDS | 50.0% | |
| GAAGAGGTGGAAGAAGGGAA+AGG | + | chr3.3:90008055-90008074 | MS.gene073059:CDS | 50.0% | |
| GAAGCCGGTGAGAAATTAGG+CGG | - | chr3.3:90007944-90007963 | None:intergenic | 50.0% | |
| GACGATCATACTTCAGCAGG+AGG | + | chr3.3:90010387-90010406 | MS.gene073059:CDS | 50.0% | |
| GAGAAATTAGGCGGAAGAGG+CGG | - | chr3.3:90007935-90007954 | None:intergenic | 50.0% | |
| GAGTATAATCCGATAGCGCG+CGG | - | chr3.3:90010693-90010712 | None:intergenic | 50.0% | |
| GCCATGCATAAAGAAGGGCT+TGG | - | chr3.3:90010297-90010316 | None:intergenic | 50.0% | |
| GGTGAGAAATTAGGCGGAAG+AGG | - | chr3.3:90007938-90007957 | None:intergenic | 50.0% | |
| TAATTCCACCGCCGATCTTG+CGG | - | chr3.3:90008015-90008034 | None:intergenic | 50.0% | |
| TGCTGTAACTGCAACGACAC+AGG | - | chr3.3:90007992-90008011 | None:intergenic | 50.0% | |
| TGTAACTGCAACGACACAGG+CGG | - | chr3.3:90007989-90008008 | None:intergenic | 50.0% | |
| TTCTTGGAATCCGGCAAAGG+CGG | - | chr3.3:90008157-90008176 | None:intergenic | 50.0% | |
| ! | AAGGGTGTATCCAATGGGGA+GGG | + | chr3.3:90008889-90008908 | MS.gene073059:CDS | 50.0% |
| ! | ACAGAGCGTTTGAGAGAAGC+CGG | - | chr3.3:90007959-90007978 | None:intergenic | 50.0% |
| ! | ATCTTTTCCACCCTCCCCAT+TGG | - | chr3.3:90008902-90008921 | None:intergenic | 50.0% |
| ! | GGCGCCAGTGTTGAATCATT+AGG | + | chr3.3:90009274-90009293 | MS.gene073059:CDS | 50.0% |
| !!! | GCAAGCGAGTTTTGAGACTC+TGG | - | chr3.3:90010660-90010679 | None:intergenic | 50.0% |
| !!! | GGGCTTGGATTGGTGGATTT+TGG | - | chr3.3:90010282-90010301 | None:intergenic | 50.0% |
| AAATTAGGCGGAAGAGGCGG+TGG | - | chr3.3:90007932-90007951 | None:intergenic | 55.0% | |
| AAGTCGATTGCCCACGCTCA+AGG | + | chr3.3:90010742-90010761 | MS.gene073059:CDS | 55.0% | |
| AGGGATTCTTCCAAAGGCGG+TGG | - | chr3.3:90007902-90007921 | None:intergenic | 55.0% | |
| AGTTTCGCCGTGAGCGTAGT+CGG | - | chr3.3:90007825-90007844 | None:intergenic | 55.0% | |
| ATCGGCGGTGGAATTAGTGG+TGG | + | chr3.3:90008019-90008038 | MS.gene073059:CDS | 55.0% | |
| CATTCCAAAGCTGCACGGTG+CGG | - | chr3.3:90010117-90010136 | None:intergenic | 55.0% | |
| GAGGTGGAAGAAGGGAAAGG+CGG | + | chr3.3:90008058-90008077 | MS.gene073059:CDS | 55.0% | |
| GATTCTTCCAAAGGCGGTGG+AGG | - | chr3.3:90007899-90007918 | None:intergenic | 55.0% | |
| GCAGATTTCGCTAGCTCGTC+AGG | - | chr3.3:90010340-90010359 | None:intergenic | 55.0% | |
| GCGCCATCTTCTCCTTCTTC+TGG | + | chr3.3:90008112-90008131 | MS.gene073059:CDS | 55.0% | |
| GGAGGGAGGGATTCTTCCAA+AGG | - | chr3.3:90007908-90007927 | None:intergenic | 55.0% | |
| GGATCAGAATGAAGAGGCGG+TGG | - | chr3.3:90007872-90007891 | None:intergenic | 55.0% | |
| GGGAGGGATTCTTCCAAAGG+CGG | - | chr3.3:90007905-90007924 | None:intergenic | 55.0% | |
| GGTGCGGTCGTAATGATGCT+TGG | - | chr3.3:90010101-90010120 | None:intergenic | 55.0% | |
| TCCAAAGGCGGTGGAGGTTT+AGG | - | chr3.3:90007893-90007912 | None:intergenic | 55.0% | |
| TCCTAAACCTCCACCGCCTT+TGG | + | chr3.3:90007889-90007908 | MS.gene073059:CDS | 55.0% | |
| TTACAGCACCGCAAGATCGG+CGG | + | chr3.3:90008004-90008023 | MS.gene073059:CDS | 55.0% | |
| ! | CAAGGGTGTATCCAATGGGG+AGG | + | chr3.3:90008888-90008907 | MS.gene073059:CDS | 55.0% |
| !! | GGTGGATTTTGGGCTCTTGG+CGG | - | chr3.3:90010271-90010290 | None:intergenic | 55.0% |
| ATTGCCCACGCTCAAGGTGG+TGG | + | chr3.3:90010748-90010767 | MS.gene073059:CDS | 60.0% | |
| GAAGGAGAAGATGGCGCGTG+AGG | - | chr3.3:90008109-90008128 | None:intergenic | 60.0% | |
| GCTCTCTCCGACTACGCTCA+CGG | + | chr3.3:90007815-90007834 | MS.gene073059:CDS | 60.0% | |
| GGCGGTGGAATTAGTGGTGG+AGG | + | chr3.3:90008022-90008041 | MS.gene073059:CDS | 60.0% | |
| GGGAAAGGCGGTGATGCTGA+TGG | + | chr3.3:90008070-90008089 | MS.gene073059:CDS | 60.0% | |
| GGTGTATCCAATGGGGAGGG+TGG | + | chr3.3:90008892-90008911 | MS.gene073059:CDS | 60.0% | |
| GTGAGCGTAGTCGGAGAGAG+CGG | - | chr3.3:90007816-90007835 | None:intergenic | 60.0% | |
| TCGATTGCCCACGCTCAAGG+TGG | + | chr3.3:90010745-90010764 | MS.gene073059:CDS | 60.0% | |
| TGAGCTCTTCCGCGCGCTAT+CGG | + | chr3.3:90010681-90010700 | MS.gene073059:CDS | 60.0% | |
| TTGGAATCCGGCAAAGGCGG+TGG | - | chr3.3:90008154-90008173 | None:intergenic | 60.0% | |
| AAGAGGCGGTGGAGGAGGGA+GGG | - | chr3.3:90007921-90007940 | None:intergenic | 65.0% | |
| ACCTGAATGACCGGCGGCGA+AGG | - | chr3.3:90007765-90007784 | None:intergenic | 65.0% | |
| ACGACCGCACCGTGCAGCTT+TGG | + | chr3.3:90010110-90010129 | MS.gene073059:CDS | 65.0% | |
| CGCACCACCACCTTGAGCGT+GGG | - | chr3.3:90010755-90010774 | None:intergenic | 65.0% | |
| GAATCCGGCAAAGGCGGTGG+CGG | - | chr3.3:90008151-90008170 | None:intergenic | 65.0% | |
| GATAGCGCGCGGAAGAGCTC+AGG | - | chr3.3:90010682-90010701 | None:intergenic | 65.0% | |
| GCTCGTAATGCCTTCGCCGC+CGG | + | chr3.3:90007752-90007771 | MS.gene073059:CDS | 65.0% | |
| TTAGGCGGAAGAGGCGGTGG+AGG | - | chr3.3:90007929-90007948 | None:intergenic | 65.0% | |
| ! | CCACGCTCAAGGTGGTGGTG+CGG | + | chr3.3:90010753-90010772 | MS.gene073059:CDS | 65.0% |
| !! | GGCGGCGAAGGCATTACGAG+CGG | - | chr3.3:90007753-90007772 | None:intergenic | 65.0% |
| CAGCACCGCAAGATCGGCGG+TGG | + | chr3.3:90008007-90008026 | MS.gene073059:CDS | 70.0% | |
| CCGCACCACCACCTTGAGCG+TGG | - | chr3.3:90010756-90010775 | None:intergenic | 70.0% | |
| GAAGAGGCGGTGGAGGAGGG+AGG | - | chr3.3:90007922-90007941 | None:intergenic | 70.0% | |
| GATGCCGCCACCGCCTTTGC+CGG | + | chr3.3:90008144-90008163 | MS.gene073059:CDS | 70.0% | |
| GCCTTCGCCGCCGGTCATTC+AGG | + | chr3.3:90007761-90007780 | MS.gene073059:CDS | 70.0% | |
| GCGGAAGAGGCGGTGGAGGA+GGG | - | chr3.3:90007925-90007944 | None:intergenic | 70.0% | |
| GTAGTCGGAGAGAGCGGCGC+CGG | - | chr3.3:90007810-90007829 | None:intergenic | 70.0% | |
| GGCGGAAGAGGCGGTGGAGG+AGG | - | chr3.3:90007926-90007945 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 90007665 | 90010780 | 90007665 | ID=MS.gene073059 |
| chr3.3 | mRNA | 90007665 | 90010780 | 90007665 | ID=MS.gene073059.t1;Parent=MS.gene073059 |
| chr3.3 | exon | 90007665 | 90008604 | 90007665 | ID=MS.gene073059.t1.exon1;Parent=MS.gene073059.t1 |
| chr3.3 | CDS | 90007665 | 90008604 | 90007665 | ID=cds.MS.gene073059.t1;Parent=MS.gene073059.t1 |
| chr3.3 | exon | 90008833 | 90009008 | 90008833 | ID=MS.gene073059.t1.exon2;Parent=MS.gene073059.t1 |
| chr3.3 | CDS | 90008833 | 90009008 | 90008833 | ID=cds.MS.gene073059.t1;Parent=MS.gene073059.t1 |
| chr3.3 | exon | 90009208 | 90009431 | 90009208 | ID=MS.gene073059.t1.exon3;Parent=MS.gene073059.t1 |
| chr3.3 | CDS | 90009208 | 90009431 | 90009208 | ID=cds.MS.gene073059.t1;Parent=MS.gene073059.t1 |
| chr3.3 | exon | 90009994 | 90010780 | 90009994 | ID=MS.gene073059.t1.exon4;Parent=MS.gene073059.t1 |
| chr3.3 | CDS | 90009994 | 90010780 | 90009994 | ID=cds.MS.gene073059.t1;Parent=MS.gene073059.t1 |
| Gene Sequence |
| Protein sequence |
