Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071422.t1 | XP_003603595.1 | 69 | 661 | 45 | 1 | 1 | 501 | 1 | 661 | 4.70E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071422.t1 | Q93YU8 | 31.5 | 311 | 192 | 6 | 199 | 496 | 442 | 744 | 9.4e-36 | 152.9 |
| MS.gene071422.t1 | Q93YU8 | 50.0 | 76 | 33 | 1 | 1 | 71 | 1 | 76 | 1.2e-11 | 72.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071422.t1 | G7J2X7 | 69.0 | 661 | 45 | 1 | 1 | 501 | 1 | 661 | 3.4e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene071422 | 0.805938 | 1.05E-49 | -1.69E-46 |
| MS.gene049298 | MS.gene071422 | 0.824851 | 6.45E-54 | -1.69E-46 |
| MS.gene050667 | MS.gene071422 | 0.811763 | 5.95E-51 | -1.69E-46 |
| MS.gene050874 | MS.gene071422 | 0.824415 | 8.17E-54 | -1.69E-46 |
| MS.gene050875 | MS.gene071422 | 0.848338 | 6.53E-60 | -1.69E-46 |
| MS.gene051025 | MS.gene071422 | 0.842102 | 3.17E-58 | -1.69E-46 |
| MS.gene05124 | MS.gene071422 | 0.801306 | 9.58E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene071422 | 0.804858 | 1.77E-49 | -1.69E-46 |
| MS.gene051914 | MS.gene071422 | 0.877432 | 6.31E-69 | -1.69E-46 |
| MS.gene052169 | MS.gene071422 | 0.859469 | 4.05E-63 | -1.69E-46 |
| MS.gene052209 | MS.gene071422 | 0.835542 | 1.58E-56 | -1.69E-46 |
| MS.gene052308 | MS.gene071422 | 0.849383 | 3.35E-60 | -1.69E-46 |
| MS.gene052349 | MS.gene071422 | 0.80292 | 4.46E-49 | -1.69E-46 |
| MS.gene052367 | MS.gene071422 | 0.827231 | 1.75E-54 | -1.69E-46 |
| MS.gene053108 | MS.gene071422 | 0.820461 | 6.77E-53 | -1.69E-46 |
| MS.gene053173 | MS.gene071422 | 0.858287 | 9.14E-63 | -1.69E-46 |
| MS.gene053348 | MS.gene071422 | 0.831309 | 1.80E-55 | -1.69E-46 |
| MS.gene054018 | MS.gene071422 | 0.811369 | 7.25E-51 | -1.69E-46 |
| MS.gene054459 | MS.gene071422 | 0.839958 | 1.16E-57 | -1.69E-46 |
| MS.gene054551 | MS.gene071422 | 0.851672 | 7.62E-61 | -1.69E-46 |
| MS.gene054593 | MS.gene071422 | 0.832572 | 8.75E-56 | -1.69E-46 |
| MS.gene054633 | MS.gene071422 | 0.847017 | 1.51E-59 | -1.69E-46 |
| MS.gene054662 | MS.gene071422 | 0.908269 | 2.06E-81 | -1.69E-46 |
| MS.gene054851 | MS.gene071422 | 0.81459 | 1.43E-51 | -1.69E-46 |
| MS.gene054885 | MS.gene071422 | 0.802552 | 5.31E-49 | -1.69E-46 |
| MS.gene054941 | MS.gene071422 | 0.829685 | 4.48E-55 | -1.69E-46 |
| MS.gene055308 | MS.gene071422 | 0.839939 | 1.17E-57 | -1.69E-46 |
| MS.gene055578 | MS.gene071422 | 0.827549 | 1.47E-54 | -1.69E-46 |
| MS.gene055616 | MS.gene071422 | 0.806382 | 8.45E-50 | -1.69E-46 |
| MS.gene055982 | MS.gene071422 | 0.812433 | 4.25E-51 | -1.69E-46 |
| MS.gene056041 | MS.gene071422 | 0.821069 | 4.91E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene071422 | -0.805735 | 1.16E-49 | -1.69E-46 |
| MS.gene05640 | MS.gene071422 | 0.875131 | 3.92E-68 | -1.69E-46 |
| MS.gene056528 | MS.gene071422 | 0.802165 | 6.39E-49 | -1.69E-46 |
| MS.gene05652 | MS.gene071422 | 0.861216 | 1.20E-63 | -1.69E-46 |
| MS.gene056583 | MS.gene071422 | 0.820755 | 5.80E-53 | -1.69E-46 |
| MS.gene056618 | MS.gene071422 | 0.822909 | 1.84E-53 | -1.69E-46 |
| MS.gene057101 | MS.gene071422 | 0.825965 | 3.52E-54 | -1.69E-46 |
| MS.gene05732 | MS.gene071422 | 0.829099 | 6.22E-55 | -1.69E-46 |
| MS.gene057367 | MS.gene071422 | 0.899638 | 1.63E-77 | -1.69E-46 |
| MS.gene057458 | MS.gene071422 | 0.821031 | 5.01E-53 | -1.69E-46 |
| MS.gene057669 | MS.gene071422 | 0.861553 | 9.46E-64 | -1.69E-46 |
| MS.gene058128 | MS.gene071422 | 0.852438 | 4.62E-61 | -1.69E-46 |
| MS.gene058827 | MS.gene071422 | 0.807049 | 6.11E-50 | -1.69E-46 |
| MS.gene058849 | MS.gene071422 | 0.80408 | 2.56E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene071422 | 0.858215 | 9.60E-63 | -1.69E-46 |
| MS.gene05926 | MS.gene071422 | 0.818305 | 2.10E-52 | -1.69E-46 |
| MS.gene059553 | MS.gene071422 | 0.85012 | 2.08E-60 | -1.69E-46 |
| MS.gene05960 | MS.gene071422 | 0.818438 | 1.96E-52 | -1.69E-46 |
| MS.gene059616 | MS.gene071422 | 0.827621 | 1.41E-54 | -1.69E-46 |
| MS.gene060275 | MS.gene071422 | 0.830756 | 2.45E-55 | -1.69E-46 |
| MS.gene060291 | MS.gene071422 | 0.867088 | 1.77E-65 | -1.69E-46 |
| MS.gene060473 | MS.gene071422 | 0.803824 | 2.90E-49 | -1.69E-46 |
| MS.gene06080 | MS.gene071422 | 0.817288 | 3.56E-52 | -1.69E-46 |
| MS.gene06093 | MS.gene071422 | 0.91597 | 3.12E-85 | -1.69E-46 |
| MS.gene061260 | MS.gene071422 | 0.825319 | 5.00E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071422.t1 | MTR_3g109450 | 98.542 | 343 | 5 | 0 | 159 | 501 | 319 | 661 | 0.0 | 697 |
| MS.gene071422.t1 | MTR_3g109450 | 98.507 | 134 | 2 | 0 | 1 | 134 | 1 | 134 | 1.67e-42 | 161 |
| MS.gene071422.t1 | MTR_2g102050 | 63.037 | 349 | 125 | 2 | 159 | 503 | 364 | 712 | 1.99e-145 | 435 |
| MS.gene071422.t1 | MTR_2g102050 | 65.000 | 60 | 21 | 0 | 1 | 60 | 1 | 60 | 2.11e-20 | 95.1 |
| MS.gene071422.t1 | MTR_4g012430 | 47.104 | 518 | 251 | 8 | 1 | 503 | 1 | 510 | 4.55e-144 | 423 |
| MS.gene071422.t1 | MTR_7g081705 | 30.990 | 313 | 198 | 3 | 198 | 500 | 491 | 795 | 1.20e-44 | 168 |
| MS.gene071422.t1 | MTR_7g081705 | 57.627 | 59 | 25 | 0 | 1 | 59 | 1 | 59 | 9.73e-15 | 77.4 |
| MS.gene071422.t1 | MTR_8g006850 | 31.013 | 316 | 202 | 6 | 198 | 500 | 363 | 675 | 3.85e-43 | 163 |
| MS.gene071422.t1 | MTR_8g006850 | 55.932 | 59 | 26 | 0 | 1 | 59 | 1 | 59 | 1.85e-14 | 76.6 |
| MS.gene071422.t1 | MTR_5g022530 | 32.727 | 330 | 197 | 5 | 174 | 500 | 284 | 591 | 7.10e-43 | 161 |
| MS.gene071422.t1 | MTR_2g048360 | 29.794 | 339 | 220 | 6 | 162 | 494 | 257 | 583 | 3.38e-34 | 136 |
| MS.gene071422.t1 | MTR_1g112850 | 28.571 | 322 | 225 | 3 | 187 | 503 | 361 | 682 | 2.11e-33 | 134 |
| MS.gene071422.t1 | MTR_4g127620 | 31.557 | 244 | 158 | 4 | 196 | 431 | 420 | 662 | 9.79e-31 | 127 |
| MS.gene071422.t1 | MTR_4g127620 | 35.294 | 119 | 71 | 2 | 1 | 113 | 1 | 119 | 9.05e-12 | 68.2 |
| MS.gene071422.t1 | MTR_5g087740 | 30.420 | 286 | 167 | 6 | 196 | 474 | 429 | 689 | 6.38e-29 | 121 |
| MS.gene071422.t1 | MTR_3g078830 | 29.617 | 287 | 174 | 6 | 167 | 430 | 400 | 681 | 1.43e-28 | 120 |
| MS.gene071422.t1 | MTR_3g088190 | 25.080 | 311 | 226 | 3 | 198 | 501 | 550 | 860 | 7.18e-28 | 118 |
| MS.gene071422.t1 | MTR_8g091250 | 28.669 | 293 | 181 | 6 | 166 | 436 | 337 | 623 | 9.49e-28 | 117 |
| MS.gene071422.t1 | MTR_5g098980 | 28.736 | 261 | 181 | 2 | 177 | 432 | 413 | 673 | 6.18e-27 | 115 |
| MS.gene071422.t1 | MTR_2g036920 | 29.818 | 275 | 168 | 7 | 173 | 428 | 571 | 839 | 7.67e-24 | 106 |
| MS.gene071422.t1 | MTR_2g036920 | 44.048 | 84 | 40 | 3 | 1 | 78 | 1 | 83 | 9.03e-13 | 71.2 |
| MS.gene071422.t1 | MTR_2g036920 | 29.818 | 275 | 168 | 7 | 173 | 428 | 542 | 810 | 8.44e-24 | 105 |
| MS.gene071422.t1 | MTR_2g036920 | 44.048 | 84 | 40 | 3 | 1 | 78 | 1 | 83 | 8.76e-13 | 71.2 |
| MS.gene071422.t1 | MTR_3g115120 | 24.364 | 275 | 201 | 3 | 195 | 465 | 359 | 630 | 1.78e-23 | 104 |
| MS.gene071422.t1 | MTR_3g096950 | 24.590 | 305 | 214 | 5 | 198 | 495 | 434 | 729 | 1.39e-18 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071422.t1 | AT5G25590 | 69.429 | 350 | 102 | 3 | 159 | 503 | 373 | 722 | 2.35e-160 | 474 |
| MS.gene071422.t1 | AT5G25590 | 70.000 | 70 | 18 | 1 | 1 | 67 | 1 | 70 | 2.20e-24 | 107 |
| MS.gene071422.t1 | AT1G52320 | 63.372 | 344 | 124 | 1 | 159 | 500 | 67 | 410 | 6.91e-156 | 452 |
| MS.gene071422.t1 | AT1G52320 | 63.372 | 344 | 124 | 1 | 159 | 500 | 67 | 410 | 6.91e-156 | 452 |
| MS.gene071422.t1 | AT1G52320 | 63.372 | 344 | 124 | 1 | 159 | 500 | 370 | 713 | 3.00e-152 | 453 |
| MS.gene071422.t1 | AT1G52320 | 63.372 | 344 | 124 | 1 | 159 | 500 | 393 | 736 | 3.00e-152 | 454 |
| MS.gene071422.t1 | AT1G52320 | 79.661 | 59 | 12 | 0 | 1 | 59 | 1 | 59 | 4.47e-16 | 82.0 |
| MS.gene071422.t1 | AT1G52320 | 63.372 | 344 | 124 | 1 | 159 | 500 | 393 | 736 | 3.00e-152 | 454 |
| MS.gene071422.t1 | AT1G52320 | 79.661 | 59 | 12 | 0 | 1 | 59 | 1 | 59 | 4.47e-16 | 82.0 |
| MS.gene071422.t1 | AT1G02110 | 31.833 | 311 | 192 | 4 | 198 | 500 | 357 | 655 | 1.04e-45 | 170 |
| MS.gene071422.t1 | AT1G02110 | 52.542 | 59 | 28 | 0 | 1 | 59 | 1 | 59 | 2.71e-13 | 72.8 |
| MS.gene071422.t1 | AT3G51290 | 32.787 | 305 | 194 | 2 | 196 | 500 | 288 | 581 | 1.04e-43 | 164 |
| MS.gene071422.t1 | AT3G51290 | 32.787 | 305 | 194 | 2 | 196 | 500 | 288 | 581 | 1.95e-43 | 164 |
| MS.gene071422.t1 | AT3G60320 | 31.731 | 312 | 192 | 7 | 198 | 496 | 441 | 744 | 1.52e-39 | 153 |
| MS.gene071422.t1 | AT3G60320 | 46.847 | 111 | 55 | 2 | 1 | 111 | 1 | 107 | 3.91e-16 | 82.0 |
| MS.gene071422.t1 | AT3G51290 | 32.131 | 305 | 190 | 3 | 196 | 500 | 288 | 575 | 3.78e-39 | 150 |
| MS.gene071422.t1 | AT2G34670 | 31.034 | 319 | 190 | 7 | 197 | 502 | 335 | 636 | 5.55e-34 | 136 |
| MS.gene071422.t1 | AT2G34670 | 48.333 | 60 | 31 | 0 | 1 | 60 | 1 | 60 | 5.46e-11 | 65.5 |
| MS.gene071422.t1 | AT2G27090 | 31.395 | 258 | 162 | 4 | 196 | 445 | 425 | 675 | 6.45e-33 | 133 |
| MS.gene071422.t1 | AT2G27090 | 31.395 | 258 | 162 | 4 | 196 | 445 | 425 | 675 | 6.45e-33 | 133 |
| MS.gene071422.t1 | AT1G21740 | 26.923 | 364 | 243 | 6 | 150 | 501 | 550 | 902 | 4.17e-29 | 122 |
| MS.gene071422.t1 | AT4G39790 | 30.357 | 336 | 194 | 11 | 110 | 418 | 274 | 596 | 5.66e-29 | 121 |
| MS.gene071422.t1 | AT1G77500 | 28.669 | 293 | 200 | 3 | 150 | 440 | 502 | 787 | 2.73e-28 | 119 |
| MS.gene071422.t1 | AT4G35240 | 30.544 | 239 | 160 | 2 | 198 | 434 | 505 | 739 | 7.14e-27 | 115 |
| MS.gene071422.t1 | AT4G35240 | 30.544 | 239 | 160 | 2 | 198 | 434 | 505 | 739 | 7.14e-27 | 115 |
| MS.gene071422.t1 | AT4G35240 | 30.544 | 239 | 160 | 2 | 198 | 434 | 505 | 739 | 7.67e-27 | 115 |
| MS.gene071422.t1 | AT4G35240 | 30.544 | 239 | 160 | 2 | 198 | 434 | 505 | 739 | 7.67e-27 | 115 |
| MS.gene071422.t1 | AT2G17110 | 29.204 | 226 | 158 | 1 | 198 | 421 | 402 | 627 | 4.40e-23 | 103 |
| MS.gene071422.t1 | AT4G30130 | 29.435 | 248 | 159 | 4 | 196 | 431 | 398 | 641 | 1.91e-22 | 101 |
| MS.gene071422.t1 | AT4G30130 | 29.435 | 248 | 159 | 4 | 196 | 431 | 398 | 641 | 1.91e-22 | 101 |
| MS.gene071422.t1 | AT2G34670 | 31.081 | 222 | 135 | 4 | 197 | 412 | 335 | 544 | 2.65e-22 | 100 |
| MS.gene071422.t1 | AT2G34670 | 48.333 | 60 | 31 | 0 | 1 | 60 | 1 | 60 | 6.27e-11 | 65.1 |
| MS.gene071422.t1 | AT2G19090 | 28.000 | 250 | 162 | 3 | 196 | 431 | 479 | 724 | 1.54e-20 | 95.9 |
| MS.gene071422.t1 | AT1G20530 | 24.413 | 213 | 142 | 4 | 198 | 403 | 309 | 509 | 4.23e-16 | 81.6 |
| MS.gene071422.t1 | AT4G30130 | 36.508 | 126 | 77 | 1 | 196 | 321 | 398 | 520 | 6.04e-15 | 77.8 |
| MS.gene071422.t1 | AT4G30130 | 36.508 | 126 | 77 | 1 | 196 | 321 | 398 | 520 | 6.04e-15 | 77.8 |
| MS.gene071422.t1 | AT5G54480 | 22.481 | 258 | 186 | 4 | 198 | 454 | 399 | 643 | 6.10e-12 | 68.6 |
Find 115 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTTGGATTGGTGGATTT+TGG | 0.116448 | 3.3:-89949378 | None:intergenic |
| AAACTTGTTGCTCTTGTTAT+TGG | 0.151747 | 3.3:+89948508 | MS.gene071422:CDS |
| GCGCCATCTTCTCCTTCTTC+TGG | 0.159074 | 3.3:+89947214 | MS.gene071422:CDS |
| CAAATTGTGACTCCCATTCT+TGG | 0.206075 | 3.3:-89949240 | None:intergenic |
| GCCTTCGCCGCCGGTCATTC+AGG | 0.243027 | 3.3:+89946863 | MS.gene071422:CDS |
| ATAACAAGAGCAACAAGTTT+TGG | 0.264787 | 3.3:-89948505 | None:intergenic |
| AGAAACACATGCCACTGTTT+TGG | 0.288622 | 3.3:+89948041 | MS.gene071422:CDS |
| CCCTTCGTTGTAAATGCTTC+TGG | 0.304621 | 3.3:-89949588 | None:intergenic |
| ACAACTGAGAATCGCGAATA+TGG | 0.320972 | 3.3:-89948480 | None:intergenic |
| TCCAAAGGCGGTGGAGGTTT+AGG | 0.322625 | 3.3:-89946992 | None:intergenic |
| CGCCATCTTCTCCTTCTTCT+GGG | 0.323153 | 3.3:+89947215 | MS.gene071422:CDS |
| AACTTGTTGCTCTTGTTATT+GGG | 0.330220 | 3.3:+89948509 | MS.gene071422:CDS |
| GGAGGAAGAGATGAAGTTAA+AGG | 0.341872 | 3.3:+89949504 | MS.gene071422:CDS |
| TCCTAAACCTCCACCGCCTT+TGG | 0.343046 | 3.3:+89946991 | MS.gene071422:CDS |
| AGAGAAGCCGGTGAGAAATT+AGG | 0.374879 | 3.3:-89947046 | None:intergenic |
| GGCGGAAGAGGCGGTGGAGG+AGG | 0.380266 | 3.3:-89947025 | None:intergenic |
| GAACATATTCTCCCACATAT+TGG | 0.386881 | 3.3:-89949098 | None:intergenic |
| GCAGATTTCGCTAGCTCGTC+AGG | 0.404088 | 3.3:-89949436 | None:intergenic |
| ACGACCGCACCGTGCAGCTT+TGG | 0.406384 | 3.3:+89949209 | MS.gene071422:CDS |
| TGATATTTCTCAAGATCATA+AGG | 0.409383 | 3.3:+89949168 | MS.gene071422:CDS |
| GAAGAGGCGGTGGAGGAGGG+AGG | 0.409543 | 3.3:-89947021 | None:intergenic |
| GCTCGTAATGCCTTCGCCGC+CGG | 0.417087 | 3.3:+89946854 | MS.gene071422:CDS |
| GAGAAATATCAAGAGATTTG+AGG | 0.419497 | 3.3:-89949156 | None:intergenic |
| ATCATCTCTTTCTAGATCAT+CGG | 0.445892 | 3.3:-89949614 | None:intergenic |
| GGTACCATTCTTCAAAAGCT+TGG | 0.451334 | 3.3:-89949567 | None:intergenic |
| TTGTTGAAGAGGTGGAAGAA+GGG | 0.456126 | 3.3:+89947152 | MS.gene071422:CDS |
| CTTTCAGGATGGCCAATATG+TGG | 0.463738 | 3.3:+89949086 | MS.gene071422:intron |
| ACAAACTGCTTCTCCGAGAT+CGG | 0.469741 | 3.3:-89949652 | None:intergenic |
| AAGATCGGCGGTGGAATTAG+TGG | 0.472783 | 3.3:+89947118 | MS.gene071422:CDS |
| TCATCTCTTTCTAGATCATC+GGG | 0.475608 | 3.3:-89949613 | None:intergenic |
| CATTCAAGGGTGTATCCAAT+GGG | 0.479178 | 3.3:+89947983 | MS.gene071422:CDS |
| ACATCCAAGCTCTTTATAGC+TGG | 0.481961 | 3.3:+89949290 | MS.gene071422:CDS |
| TAAAGAAGGGCTTGGATTGG+TGG | 0.484719 | 3.3:-89949385 | None:intergenic |
| GAAATGTGAGGAAACTAGAA+AGG | 0.486729 | 3.3:+89949528 | MS.gene071422:CDS |
| ATTGTTGAAGAGGTGGAAGA+AGG | 0.490175 | 3.3:+89947151 | MS.gene071422:CDS |
| TTTGGAATGTAATCCAAGAA+TGG | 0.494175 | 3.3:+89949227 | MS.gene071422:CDS |
| TTAGGCGGAAGAGGCGGTGG+AGG | 0.494227 | 3.3:-89947028 | None:intergenic |
| GGCGCCAGTGTTGAATCATT+AGG | 0.496446 | 3.3:+89948373 | MS.gene071422:CDS |
| TTGGAATGTAATCCAAGAAT+GGG | 0.497192 | 3.3:+89949228 | MS.gene071422:CDS |
| CAGTTACAGCACCGCAAGAT+CGG | 0.497409 | 3.3:+89947103 | MS.gene071422:CDS |
| ACCTGAATGACCGGCGGCGA+AGG | 0.502395 | 3.3:-89946864 | None:intergenic |
| AAATTAGGCGGAAGAGGCGG+TGG | 0.507309 | 3.3:-89947031 | None:intergenic |
| GATTCTTCCAAAGGCGGTGG+AGG | 0.508145 | 3.3:-89946998 | None:intergenic |
| TGCAAGTGATAACATGGAAT+CGG | 0.508476 | 3.3:+89947959 | MS.gene071422:CDS |
| GCGGAAGAGGCGGTGGAGGA+GGG | 0.508892 | 3.3:-89947024 | None:intergenic |
| AATCATGCCATGCATAAAGA+AGG | 0.514400 | 3.3:-89949399 | None:intergenic |
| TCTTGTGTGTAAATGACTTA+CGG | 0.517302 | 3.3:-89948410 | None:intergenic |
| AAAGACGATCATACTTCAGC+AGG | 0.518195 | 3.3:+89949483 | MS.gene071422:CDS |
| CAGCACCGCAAGATCGGCGG+TGG | 0.518911 | 3.3:+89947109 | MS.gene071422:CDS |
| CGGTCATTCAGGTTATGCTA+TGG | 0.522813 | 3.3:+89946874 | MS.gene071422:CDS |
| GGTGAGAAATTAGGCGGAAG+AGG | 0.523496 | 3.3:-89947037 | None:intergenic |
| TGAGCCAGCTATAAAGAGCT+TGG | 0.525015 | 3.3:-89949294 | None:intergenic |
| GAAGGAGAAGATGGCGCGTG+AGG | 0.530503 | 3.3:-89947208 | None:intergenic |
| TCATTCAAGGGTGTATCCAA+TGG | 0.533090 | 3.3:+89947982 | MS.gene071422:CDS |
| TCCAAGCCCTTCTTTATGCA+TGG | 0.533581 | 3.3:+89949392 | MS.gene071422:CDS |
| CTCCCAGAAGAAGGAGAAGA+TGG | 0.534623 | 3.3:-89947217 | None:intergenic |
| AACATGGAATCGGTCATTCA+AGG | 0.539680 | 3.3:+89947969 | MS.gene071422:CDS |
| GGTGTATCCAATGGGGAGGG+TGG | 0.541152 | 3.3:+89947991 | MS.gene071422:CDS |
| GCCATGCATAAAGAAGGGCT+TGG | 0.543280 | 3.3:-89949393 | None:intergenic |
| CTTTATCACTGCAGAAAATG+AGG | 0.543457 | 3.3:-89949464 | None:intergenic |
| ATCACTTTACTCCCAGAAGA+AGG | 0.544452 | 3.3:-89947226 | None:intergenic |
| GGCGGTGGAATTAGTGGTGG+AGG | 0.549912 | 3.3:+89947124 | MS.gene071422:CDS |
| CCAGAAGCATTTACAACGAA+GGG | 0.551600 | 3.3:+89949588 | MS.gene071422:CDS |
| ACAGAGCGTTTGAGAGAAGC+CGG | 0.551771 | 3.3:-89947058 | None:intergenic |
| GGATCAGAATGAAGAGGCGG+TGG | 0.555414 | 3.3:-89946971 | None:intergenic |
| TTTGGACAAGTTGTTAGCAT+GGG | 0.555933 | 3.3:+89948059 | MS.gene071422:CDS |
| GCATAAAGAAGGGCTTGGAT+TGG | 0.556125 | 3.3:-89949388 | None:intergenic |
| AAGAGGCGGTGGAGGAGGGA+GGG | 0.557539 | 3.3:-89947020 | None:intergenic |
| TAATTCCACCGCCGATCTTG+CGG | 0.558644 | 3.3:-89947114 | None:intergenic |
| CATAGCATAACCTGAATGAC+CGG | 0.563400 | 3.3:-89946873 | None:intergenic |
| TGCTGTAACTGCAACGACAC+AGG | 0.563887 | 3.3:-89947091 | None:intergenic |
| AAATACAAACAATCCGATCT+CGG | 0.564703 | 3.3:+89949639 | MS.gene071422:CDS |
| ACATGGAATCGGTCATTCAA+GGG | 0.566506 | 3.3:+89947970 | MS.gene071422:CDS |
| AGGGATTCTTCCAAAGGCGG+TGG | 0.573076 | 3.3:-89947001 | None:intergenic |
| AGTTTCGCCGTGAGCGTAGT+CGG | 0.573795 | 3.3:-89946924 | None:intergenic |
| TTTCAGGATGGCCAATATGT+GGG | 0.579247 | 3.3:+89949087 | MS.gene071422:intron |
| TATTGTTGATATGCAGTCGA+TGG | 0.581443 | 3.3:+89948435 | MS.gene071422:CDS |
| GAAGAGGTGGAAGAAGGGAA+AGG | 0.581945 | 3.3:+89947157 | MS.gene071422:CDS |
| GGGAAAGGCGGTGATGCTGA+TGG | 0.584993 | 3.3:+89947172 | MS.gene071422:CDS |
| TGGAGGTGACATTGTTGAAG+AGG | 0.585814 | 3.3:+89947141 | MS.gene071422:CDS |
| GAAACTCTATGAAGAAGTCA+AGG | 0.586792 | 3.3:+89948086 | MS.gene071422:CDS |
| GAGGTGGAAGAAGGGAAAGG+CGG | 0.588013 | 3.3:+89947160 | MS.gene071422:CDS |
| GTAGTCGGAGAGAGCGGCGC+CGG | 0.592343 | 3.3:-89946909 | None:intergenic |
| GAGTCATGCAAGTGATAACA+TGG | 0.593246 | 3.3:+89947953 | MS.gene071422:CDS |
| CAGAAGCATTTACAACGAAG+GGG | 0.593582 | 3.3:+89949589 | MS.gene071422:CDS |
| AGGTGACATTGTTGAAGAGG+TGG | 0.593877 | 3.3:+89947144 | MS.gene071422:CDS |
| GGTGCGGTCGTAATGATGCT+TGG | 0.594455 | 3.3:-89949197 | None:intergenic |
| GGACTCAACAGTTTCTGAAG+TGG | 0.596338 | 3.3:+89948456 | MS.gene071422:CDS |
| TCTTCCGCCTAATTTCTCAC+CGG | 0.608905 | 3.3:+89947039 | MS.gene071422:CDS |
| ATCATGCCATGCATAAAGAA+GGG | 0.611365 | 3.3:-89949398 | None:intergenic |
| GAAGTTAAAGGAGAAATGTG+AGG | 0.611782 | 3.3:+89949516 | MS.gene071422:CDS |
| AAACTAGAAAGGAATTCTTG+AGG | 0.618185 | 3.3:+89949539 | MS.gene071422:CDS |
| GGAGGGAGGGATTCTTCCAA+AGG | 0.620699 | 3.3:-89947007 | None:intergenic |
| CAAGGGTGTATCCAATGGGG+AGG | 0.622313 | 3.3:+89947987 | MS.gene071422:CDS |
| GCTCTCTCCGACTACGCTCA+CGG | 0.622545 | 3.3:+89946917 | MS.gene071422:CDS |
| ACCAGAAGCATTTACAACGA+AGG | 0.625698 | 3.3:+89949587 | MS.gene071422:CDS |
| CTGAACAAGCAGAAGAAGCG+TGG | 0.626103 | 3.3:+89948352 | MS.gene071422:CDS |
| GACGATCATACTTCAGCAGG+AGG | 0.629306 | 3.3:+89949486 | MS.gene071422:CDS |
| ATCGGCGGTGGAATTAGTGG+TGG | 0.630858 | 3.3:+89947121 | MS.gene071422:CDS |
| GATTACATTCCAAAGCTGCA+CGG | 0.636378 | 3.3:-89949218 | None:intergenic |
| GGCGGCGAAGGCATTACGAG+CGG | 0.649430 | 3.3:-89946852 | None:intergenic |
| GTGAGCGTAGTCGGAGAGAG+CGG | 0.649810 | 3.3:-89946915 | None:intergenic |
| GAGAAATTAGGCGGAAGAGG+CGG | 0.650849 | 3.3:-89947034 | None:intergenic |
| GGTTTAGGATCAGAATGAAG+AGG | 0.652248 | 3.3:-89946977 | None:intergenic |
| TTACAGCACCGCAAGATCGG+CGG | 0.652795 | 3.3:+89947106 | MS.gene071422:CDS |
| AAGGGTGTATCCAATGGGGA+GGG | 0.663838 | 3.3:+89947988 | MS.gene071422:CDS |
| CATTCCAAAGCTGCACGGTG+CGG | 0.678361 | 3.3:-89949213 | None:intergenic |
| GAAGCCGGTGAGAAATTAGG+CGG | 0.684519 | 3.3:-89947043 | None:intergenic |
| GGGAGGGATTCTTCCAAAGG+CGG | 0.689716 | 3.3:-89947004 | None:intergenic |
| TGTAACTGCAACGACACAGG+CGG | 0.699824 | 3.3:-89947088 | None:intergenic |
| AGAAGCATTTACAACGAAGG+GGG | 0.702303 | 3.3:+89949590 | MS.gene071422:CDS |
| TTAGGATCAGAATGAAGAGG+CGG | 0.705551 | 3.3:-89946974 | None:intergenic |
| AGCATAACCTGAATGACCGG+CGG | 0.709251 | 3.3:-89946870 | None:intergenic |
| TAACAACTTGTCCAAAACAG+TGG | 0.715371 | 3.3:-89948052 | None:intergenic |
| ATTCAAGGGTGTATCCAATG+GGG | 0.730624 | 3.3:+89947984 | MS.gene071422:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTATAAAATTGTAAG+TGG | + | chr3.3:89948773-89948792 | MS.gene071422:intron | 15.0% |
| !! | TACAACATTAAAATAAACTT+CGG | - | chr3.3:89948886-89948905 | None:intergenic | 15.0% |
| !!! | CAATAAGTGAAATTTTAAAA+AGG | - | chr3.3:89948280-89948299 | None:intergenic | 15.0% |
| !! | ACTGAAGTTGAATAAAATAA+AGG | - | chr3.3:89947736-89947755 | None:intergenic | 20.0% |
| !! | TTTATGGATATGGATAATAT+GGG | + | chr3.3:89947298-89947317 | MS.gene071422:intron | 20.0% |
| !!! | ACAACTAGAGTTTTAAAAAA+AGG | - | chr3.3:89947841-89947860 | None:intergenic | 20.0% |
| !!! | ATAATAAAATGCTTTTCGAT+TGG | - | chr3.3:89948805-89948824 | None:intergenic | 20.0% |
| !!! | GAAAGTATAAATGTCAAAAA+TGG | - | chr3.3:89948125-89948144 | None:intergenic | 20.0% |
| !!! | TAATAAAATGCTTTTCGATT+GGG | - | chr3.3:89948804-89948823 | None:intergenic | 20.0% |
| !!! | TAGAATATATTTTGCAACAT+CGG | - | chr3.3:89948761-89948780 | None:intergenic | 20.0% |
| ! | ATCATTAGGAAAAACTAAAG+CGG | + | chr3.3:89948387-89948406 | MS.gene071422:CDS | 25.0% |
| ! | CAAATATAGATTGAGAATCT+AGG | - | chr3.3:89948839-89948858 | None:intergenic | 25.0% |
| ! | CTTTATGGATATGGATAATA+TGG | + | chr3.3:89947297-89947316 | MS.gene071422:intron | 25.0% |
| ! | TAAAATAAACTTCGGTATCT+AGG | - | chr3.3:89948878-89948897 | None:intergenic | 25.0% |
| ! | TGATATTTCTCAAGATCATA+AGG | + | chr3.3:89949168-89949187 | MS.gene071422:CDS | 25.0% |
| ! | TGATGCAAAAAATAGAAACT+TGG | - | chr3.3:89949020-89949039 | None:intergenic | 25.0% |
| !! | GGATTATTTCTTTATGGATA+TGG | + | chr3.3:89947288-89947307 | MS.gene071422:intron | 25.0% |
| !!! | AGAGTTTTAAAAAAAGGTCT+AGG | - | chr3.3:89947835-89947854 | None:intergenic | 25.0% |
| !!! | TCTATTTTTTGCATCACAAA+TGG | + | chr3.3:89949024-89949043 | MS.gene071422:intron | 25.0% |
| !!! | TTTTCAATTTGTTCTGGTAT+TGG | + | chr3.3:89948952-89948971 | MS.gene071422:intron | 25.0% |
| AAACTAGAAAGGAATTCTTG+AGG | + | chr3.3:89949539-89949558 | MS.gene071422:CDS | 30.0% | |
| AAAGCTAACTAACAAGATGA+AGG | - | chr3.3:89948147-89948166 | None:intergenic | 30.0% | |
| AAATACAAACAATCCGATCT+CGG | + | chr3.3:89949639-89949658 | MS.gene071422:CDS | 30.0% | |
| AATGAAGAAGGTGAAATTGA+AGG | + | chr3.3:89947355-89947374 | MS.gene071422:intron | 30.0% | |
| ACCAGAACAAATTGAAAACT+AGG | - | chr3.3:89948950-89948969 | None:intergenic | 30.0% | |
| ACTCTAGTTGTGTAAAGTTA+AGG | + | chr3.3:89947850-89947869 | MS.gene071422:intron | 30.0% | |
| AGAACTAAGAATCTGCATAA+GGG | - | chr3.3:89947583-89947602 | None:intergenic | 30.0% | |
| ATAGAAACTTGGTACTTGAT+TGG | - | chr3.3:89949009-89949028 | None:intergenic | 30.0% | |
| ATCATCTCTTTCTAGATCAT+CGG | - | chr3.3:89949617-89949636 | None:intergenic | 30.0% | |
| CAATTTGGATAATGACATCA+AGG | - | chr3.3:89947808-89947827 | None:intergenic | 30.0% | |
| CTAACATTCAAGACTAATTC+AGG | - | chr3.3:89948715-89948734 | None:intergenic | 30.0% | |
| CTAAGATATCAAATAAGCAC+AGG | - | chr3.3:89948577-89948596 | None:intergenic | 30.0% | |
| GAATCTACTTGATTTCTTTC+AGG | + | chr3.3:89949071-89949090 | MS.gene071422:intron | 30.0% | |
| GAGAAATATCAAGAGATTTG+AGG | - | chr3.3:89949159-89949178 | None:intergenic | 30.0% | |
| GTGCTTATTTGATATCTTAG+TGG | + | chr3.3:89948577-89948596 | MS.gene071422:intron | 30.0% | |
| TATCATTCTAATTTCGCTGA+TGG | + | chr3.3:89947678-89947697 | MS.gene071422:intron | 30.0% | |
| TCAAGTAGATTCATGAATCA+TGG | - | chr3.3:89949063-89949082 | None:intergenic | 30.0% | |
| TCTTGTGTGTAAATGACTTA+CGG | - | chr3.3:89948413-89948432 | None:intergenic | 30.0% | |
| TGAGTTTAGAAGAGCAATTA+AGG | + | chr3.3:89947542-89947561 | MS.gene071422:intron | 30.0% | |
| TGATGTCATTATCCAAATTG+CGG | + | chr3.3:89947808-89947827 | MS.gene071422:intron | 30.0% | |
| TGTAAAGTGACACGATTATT+AGG | - | chr3.3:89948917-89948936 | None:intergenic | 30.0% | |
| TTGGAATGTAATCCAAGAAT+GGG | + | chr3.3:89949228-89949247 | MS.gene071422:CDS | 30.0% | |
| ! | ATAACAAGAGCAACAAGTTT+TGG | - | chr3.3:89948508-89948527 | None:intergenic | 30.0% |
| ! | TTGGTGTGTTAGCAAAATTT+TGG | - | chr3.3:89948990-89949009 | None:intergenic | 30.0% |
| ! | TTGGTTAAAGGAAGTTTTCA+AGG | - | chr3.3:89948662-89948681 | None:intergenic | 30.0% |
| ! | TTTGGAATGTAATCCAAGAA+TGG | + | chr3.3:89949227-89949246 | MS.gene071422:CDS | 30.0% |
| ! | TTTTCCTAATGATTCAACAC+TGG | - | chr3.3:89948380-89948399 | None:intergenic | 30.0% |
| !! | AAAACCAAGCTTTTGAAGAA+TGG | + | chr3.3:89949563-89949582 | MS.gene071422:CDS | 30.0% |
| !! | AAACTTGTTGCTCTTGTTAT+TGG | + | chr3.3:89948508-89948527 | MS.gene071422:CDS | 30.0% |
| !! | AACTTGTTGCTCTTGTTATT+GGG | + | chr3.3:89948509-89948528 | MS.gene071422:CDS | 30.0% |
| !! | TAACTTGTTGCTCTTAATGA+GGG | + | chr3.3:89948250-89948269 | MS.gene071422:intron | 30.0% |
| !! | TCCTAGTTTTCAATTTGTTC+TGG | + | chr3.3:89948946-89948965 | MS.gene071422:intron | 30.0% |
| !!! | AGTTAAGGTTTTTAGTTAGC+TGG | + | chr3.3:89947865-89947884 | MS.gene071422:intron | 30.0% |
| !!! | GAGACGAGATTTTTTCTTTT+AGG | - | chr3.3:89949348-89949367 | None:intergenic | 30.0% |
| AATCATGCCATGCATAAAGA+AGG | - | chr3.3:89949402-89949421 | None:intergenic | 35.0% | |
| ATCATGCCATGCATAAAGAA+GGG | - | chr3.3:89949401-89949420 | None:intergenic | 35.0% | |
| ATTCTAATTTCGCTGATGGT+CGG | + | chr3.3:89947682-89947701 | MS.gene071422:intron | 35.0% | |
| CTACTTGATTTCTTTCAGGA+TGG | + | chr3.3:89949075-89949094 | MS.gene071422:intron | 35.0% | |
| CTTTATCACTGCAGAAAATG+AGG | - | chr3.3:89949467-89949486 | None:intergenic | 35.0% | |
| GAAACTCTATGAAGAAGTCA+AGG | + | chr3.3:89948086-89948105 | MS.gene071422:CDS | 35.0% | |
| GAAATGTGAGGAAACTAGAA+AGG | + | chr3.3:89949528-89949547 | MS.gene071422:CDS | 35.0% | |
| GAACATATTCTCCCACATAT+TGG | - | chr3.3:89949101-89949120 | None:intergenic | 35.0% | |
| GAAGTTAAAGGAGAAATGTG+AGG | + | chr3.3:89949516-89949535 | MS.gene071422:CDS | 35.0% | |
| GAGAACTAAGAATCTGCATA+AGG | - | chr3.3:89947584-89947603 | None:intergenic | 35.0% | |
| GAGAATGTTGATGTTAATGG+AGG | + | chr3.3:89947379-89947398 | MS.gene071422:intron | 35.0% | |
| GATATGGATAATATGGGAAG+AGG | + | chr3.3:89947304-89947323 | MS.gene071422:intron | 35.0% | |
| GATGAGATTGAGAATGAAGA+AGG | + | chr3.3:89947343-89947362 | MS.gene071422:intron | 35.0% | |
| GGTGAGAATGTTGATGTTAA+TGG | + | chr3.3:89947376-89947395 | MS.gene071422:intron | 35.0% | |
| GTCCTAAATTTCATGCTTGT+TGG | + | chr3.3:89948689-89948708 | MS.gene071422:intron | 35.0% | |
| GTTTAGAAGAGCAATTAAGG+TGG | + | chr3.3:89947545-89947564 | MS.gene071422:intron | 35.0% | |
| TAACAACTTGTCCAAAACAG+TGG | - | chr3.3:89948055-89948074 | None:intergenic | 35.0% | |
| TATTGTTGATATGCAGTCGA+TGG | + | chr3.3:89948435-89948454 | MS.gene071422:CDS | 35.0% | |
| TCATCTCTTTCTAGATCATC+GGG | - | chr3.3:89949616-89949635 | None:intergenic | 35.0% | |
| TGCAAGTGATAACATGGAAT+CGG | + | chr3.3:89947959-89947978 | MS.gene071422:CDS | 35.0% | |
| TTTGGACAAGTTGTTAGCAT+GGG | + | chr3.3:89948059-89948078 | MS.gene071422:CDS | 35.0% | |
| ! | ATATCTCTTTGACTTCCCAT+TGG | - | chr3.3:89948544-89948563 | None:intergenic | 35.0% |
| ! | ATTGGGTAAGTATTGCCAAT+GGG | + | chr3.3:89948526-89948545 | MS.gene071422:intron | 35.0% |
| ! | CTTCACGCATTAAGTTTTTG+CGG | - | chr3.3:89946826-89946845 | None:intergenic | 35.0% |
| ! | GAAATTTAGGACGTTGTCAT+TGG | - | chr3.3:89948681-89948700 | None:intergenic | 35.0% |
| ! | GGCTTGGGATTATTTCTTTA+TGG | + | chr3.3:89947282-89947301 | MS.gene071422:intron | 35.0% |
| ! | TATTGGGTAAGTATTGCCAA+TGG | + | chr3.3:89948525-89948544 | MS.gene071422:intron | 35.0% |
| ! | TGATTTGCAATGACATTAGC+AGG | + | chr3.3:89947910-89947929 | MS.gene071422:intron | 35.0% |
| ! | TTTTGGACAAGTTGTTAGCA+TGG | + | chr3.3:89948058-89948077 | MS.gene071422:CDS | 35.0% |
| !! | GTAACTTGTTGCTCTTAATG+AGG | + | chr3.3:89948249-89948268 | MS.gene071422:intron | 35.0% |
| !! | GTTTTCAAGGAAGTTCACAA+CGG | - | chr3.3:89948649-89948668 | None:intergenic | 35.0% |
| !!! | GTGACCAAAGTTTTAAATCG+CGG | + | chr3.3:89947770-89947789 | MS.gene071422:intron | 35.0% |
| !!! | TCTTTTAGGTTGCTTTCGAT+GGG | - | chr3.3:89949334-89949353 | None:intergenic | 35.0% |
| !!! | TGACCAAAGTTTTAAATCGC+GGG | + | chr3.3:89947771-89947790 | MS.gene071422:intron | 35.0% |
| !!! | TTCTTTTAGGTTGCTTTCGA+TGG | - | chr3.3:89949335-89949354 | None:intergenic | 35.0% |
| AAAGACGATCATACTTCAGC+AGG | + | chr3.3:89949483-89949502 | MS.gene071422:CDS | 40.0% | |
| AACATGGAATCGGTCATTCA+AGG | + | chr3.3:89947969-89947988 | MS.gene071422:CDS | 40.0% | |
| ACAACTGAGAATCGCGAATA+TGG | - | chr3.3:89948483-89948502 | None:intergenic | 40.0% | |
| ACATCAACCTCAACTTTCTC+CGG | - | chr3.3:89947436-89947455 | None:intergenic | 40.0% | |
| ACATCCAAGCTCTTTATAGC+TGG | + | chr3.3:89949290-89949309 | MS.gene071422:CDS | 40.0% | |
| ACATGGAATCGGTCATTCAA+GGG | + | chr3.3:89947970-89947989 | MS.gene071422:CDS | 40.0% | |
| AGAGCATGAACATGTACATG+AGG | + | chr3.3:89947464-89947483 | MS.gene071422:intron | 40.0% | |
| ATAATCCCAAGCCATGTTCT+TGG | - | chr3.3:89947275-89947294 | None:intergenic | 40.0% | |
| ATCACTTTACTCCCAGAAGA+AGG | - | chr3.3:89947229-89947248 | None:intergenic | 40.0% | |
| ATCTGCATAAGGGTAACAGA+AGG | - | chr3.3:89947573-89947592 | None:intergenic | 40.0% | |
| ATTGCTCTTCTAAACTCAGC+AGG | - | chr3.3:89947540-89947559 | None:intergenic | 40.0% | |
| ATTGTTGAAGAGGTGGAAGA+AGG | + | chr3.3:89947151-89947170 | MS.gene071422:CDS | 40.0% | |
| CAAATTGTGACTCCCATTCT+TGG | - | chr3.3:89949243-89949262 | None:intergenic | 40.0% | |
| CATAGCATAACCTGAATGAC+CGG | - | chr3.3:89946876-89946895 | None:intergenic | 40.0% | |
| CTAAGATGCTTGAAGCTACT+AGG | + | chr3.3:89947649-89947668 | MS.gene071422:intron | 40.0% | |
| GAGTCATGCAAGTGATAACA+TGG | + | chr3.3:89947953-89947972 | MS.gene071422:CDS | 40.0% | |
| GATTACATTCCAAAGCTGCA+CGG | - | chr3.3:89949221-89949240 | None:intergenic | 40.0% | |
| GGAGGAAGAGATGAAGTTAA+AGG | + | chr3.3:89949504-89949523 | MS.gene071422:CDS | 40.0% | |
| GGCCAACAAGCATGAAATTT+AGG | - | chr3.3:89948694-89948713 | None:intergenic | 40.0% | |
| GGTACCATTCTTCAAAAGCT+TGG | - | chr3.3:89949570-89949589 | None:intergenic | 40.0% | |
| TAGAAAACACGACAGTACAG+TGG | - | chr3.3:89948197-89948216 | None:intergenic | 40.0% | |
| TGAGGATGATGTGATAAGAG+AGG | + | chr3.3:89947482-89947501 | MS.gene071422:intron | 40.0% | |
| TGATGTTAATGGAGGACATG+TGG | + | chr3.3:89947387-89947406 | MS.gene071422:intron | 40.0% | |
| TTAGCTGGAATTGACATGCA+AGG | + | chr3.3:89947880-89947899 | MS.gene071422:intron | 40.0% | |
| TTAGGATCAGAATGAAGAGG+CGG | - | chr3.3:89946977-89946996 | None:intergenic | 40.0% | |
| TTCACTTATTGTCGACAGCA+AGG | + | chr3.3:89948289-89948308 | MS.gene071422:intron | 40.0% | |
| TTCTAATTTCGCTGATGGTC+GGG | + | chr3.3:89947683-89947702 | MS.gene071422:intron | 40.0% | |
| TTGTTGAAGAGGTGGAAGAA+GGG | + | chr3.3:89947152-89947171 | MS.gene071422:CDS | 40.0% | |
| TTTCAGGATGGCCAATATGT+GGG | + | chr3.3:89949087-89949106 | MS.gene071422:intron | 40.0% | |
| ! | AGAAACACATGCCACTGTTT+TGG | + | chr3.3:89948041-89948060 | MS.gene071422:CDS | 40.0% |
| ! | AGGACGTTGTCATTGGTTAA+AGG | - | chr3.3:89948674-89948693 | None:intergenic | 40.0% |
| ! | ATTCAAGGGTGTATCCAATG+GGG | + | chr3.3:89947984-89948003 | MS.gene071422:CDS | 40.0% |
| ! | CATTCAAGGGTGTATCCAAT+GGG | + | chr3.3:89947983-89948002 | MS.gene071422:CDS | 40.0% |
| ! | GGTCTGTAACTATTTTCAGC+TGG | - | chr3.3:89949138-89949157 | None:intergenic | 40.0% |
| ! | GGTTTAGGATCAGAATGAAG+AGG | - | chr3.3:89946980-89946999 | None:intergenic | 40.0% |
| ! | TCATTCAAGGGTGTATCCAA+TGG | + | chr3.3:89947982-89948001 | MS.gene071422:CDS | 40.0% |
| ! | TTGCAACATCGGTTACTACT+AGG | - | chr3.3:89948750-89948769 | None:intergenic | 40.0% |
| !! | ACCAGAAGCATTTACAACGA+AGG | + | chr3.3:89949587-89949606 | MS.gene071422:CDS | 40.0% |
| !! | AGAAGCATTTACAACGAAGG+GGG | + | chr3.3:89949590-89949609 | MS.gene071422:CDS | 40.0% |
| !! | CAGAAGCATTTACAACGAAG+GGG | + | chr3.3:89949589-89949608 | MS.gene071422:CDS | 40.0% |
| !! | CCAGAAGCATTTACAACGAA+GGG | + | chr3.3:89949588-89949607 | MS.gene071422:CDS | 40.0% |
| ACAAACTGCTTCTCCGAGAT+CGG | - | chr3.3:89949655-89949674 | None:intergenic | 45.0% | |
| AGAGAAGCCGGTGAGAAATT+AGG | - | chr3.3:89947049-89947068 | None:intergenic | 45.0% | |
| AGGTGACATTGTTGAAGAGG+TGG | + | chr3.3:89947144-89947163 | MS.gene071422:CDS | 45.0% | |
| ATCGGTTACTACTAGGATGC+TGG | - | chr3.3:89948743-89948762 | None:intergenic | 45.0% | |
| ATGTTCTTGGAATCCGGCAA+AGG | - | chr3.3:89947262-89947281 | None:intergenic | 45.0% | |
| CAAGCCATGTTCTTGGAATC+CGG | - | chr3.3:89947268-89947287 | None:intergenic | 45.0% | |
| CCCTTCGTTGTAAATGCTTC+TGG | - | chr3.3:89949591-89949610 | None:intergenic | 45.0% | |
| CTTTCAGGATGGCCAATATG+TGG | + | chr3.3:89949086-89949105 | MS.gene071422:intron | 45.0% | |
| GCATAAAGAAGGGCTTGGAT+TGG | - | chr3.3:89949391-89949410 | None:intergenic | 45.0% | |
| GCTATGGCTCTCAAAAACAC+CGG | + | chr3.3:89946890-89946909 | MS.gene071422:CDS | 45.0% | |
| GGAATTGACATGCAAGGTTG+AGG | + | chr3.3:89947886-89947905 | MS.gene071422:intron | 45.0% | |
| GGATTCCAAGAACATGGCTT+GGG | + | chr3.3:89947267-89947286 | MS.gene071422:intron | 45.0% | |
| GGGAAGAGGTTCTTTGAATG+AGG | + | chr3.3:89947318-89947337 | MS.gene071422:intron | 45.0% | |
| TCAACTTTCTCCGGTGTCTT+GGG | - | chr3.3:89947427-89947446 | None:intergenic | 45.0% | |
| TCCAAGCCCTTCTTTATGCA+TGG | + | chr3.3:89949392-89949411 | MS.gene071422:CDS | 45.0% | |
| TCTAATTTCGCTGATGGTCG+GGG | + | chr3.3:89947684-89947703 | MS.gene071422:intron | 45.0% | |
| TCTTCCGCCTAATTTCTCAC+CGG | + | chr3.3:89947039-89947058 | MS.gene071422:CDS | 45.0% | |
| TGAGATTGAACCCAAGACAC+CGG | + | chr3.3:89947414-89947433 | MS.gene071422:intron | 45.0% | |
| TGAGCCAGCTATAAAGAGCT+TGG | - | chr3.3:89949297-89949316 | None:intergenic | 45.0% | |
| TGGAGGTGACATTGTTGAAG+AGG | + | chr3.3:89947141-89947160 | MS.gene071422:CDS | 45.0% | |
| TGTTAATGGAGGACATGTGG+AGG | + | chr3.3:89947390-89947409 | MS.gene071422:intron | 45.0% | |
| TTTGCCGGATTCCAAGAACA+TGG | + | chr3.3:89947261-89947280 | MS.gene071422:intron | 45.0% | |
| ! | AAAGGTCTAGGACCGCAATT+TGG | - | chr3.3:89947823-89947842 | None:intergenic | 45.0% |
| ! | CGGTCATTCAGGTTATGCTA+TGG | + | chr3.3:89946874-89946893 | MS.gene071422:CDS | 45.0% |
| ! | GGACTCAACAGTTTCTGAAG+TGG | + | chr3.3:89948456-89948475 | MS.gene071422:CDS | 45.0% |
| ! | GTGCCCGCGATTTAAAACTT+TGG | - | chr3.3:89947777-89947796 | None:intergenic | 45.0% |
| ! | TAAAGAAGGGCTTGGATTGG+TGG | - | chr3.3:89949388-89949407 | None:intergenic | 45.0% |
| !!! | ATTGGTGGATTTTGGGCTCT+TGG | - | chr3.3:89949373-89949392 | None:intergenic | 45.0% |
| !!! | GGCTTGGATTGGTGGATTTT+GGG | - | chr3.3:89949380-89949399 | None:intergenic | 45.0% |
| AAGATCGGCGGTGGAATTAG+TGG | + | chr3.3:89947118-89947137 | MS.gene071422:CDS | 50.0% | |
| AGCATAACCTGAATGACCGG+CGG | - | chr3.3:89946873-89946892 | None:intergenic | 50.0% | |
| CAAGACACCGGAGAAAGTTG+AGG | + | chr3.3:89947426-89947445 | MS.gene071422:intron | 50.0% | |
| CAGTTACAGCACCGCAAGAT+CGG | + | chr3.3:89947103-89947122 | MS.gene071422:CDS | 50.0% | |
| CGCCATCTTCTCCTTCTTCT+GGG | + | chr3.3:89947215-89947234 | MS.gene071422:CDS | 50.0% | |
| CGGATTCCAAGAACATGGCT+TGG | + | chr3.3:89947266-89947285 | MS.gene071422:intron | 50.0% | |
| CTCAACTTTCTCCGGTGTCT+TGG | - | chr3.3:89947428-89947447 | None:intergenic | 50.0% | |
| CTCCCAGAAGAAGGAGAAGA+TGG | - | chr3.3:89947220-89947239 | None:intergenic | 50.0% | |
| CTGAACAAGCAGAAGAAGCG+TGG | + | chr3.3:89948352-89948371 | MS.gene071422:CDS | 50.0% | |
| GAAGAGGTGGAAGAAGGGAA+AGG | + | chr3.3:89947157-89947176 | MS.gene071422:CDS | 50.0% | |
| GAAGCCGGTGAGAAATTAGG+CGG | - | chr3.3:89947046-89947065 | None:intergenic | 50.0% | |
| GACGATCATACTTCAGCAGG+AGG | + | chr3.3:89949486-89949505 | MS.gene071422:CDS | 50.0% | |
| GAGAAATTAGGCGGAAGAGG+CGG | - | chr3.3:89947037-89947056 | None:intergenic | 50.0% | |
| GCCATGCATAAAGAAGGGCT+TGG | - | chr3.3:89949396-89949415 | None:intergenic | 50.0% | |
| GGTGAGAAATTAGGCGGAAG+AGG | - | chr3.3:89947040-89947059 | None:intergenic | 50.0% | |
| TAATTCCACCGCCGATCTTG+CGG | - | chr3.3:89947117-89947136 | None:intergenic | 50.0% | |
| TGCTGTAACTGCAACGACAC+AGG | - | chr3.3:89947094-89947113 | None:intergenic | 50.0% | |
| TGTAACTGCAACGACACAGG+CGG | - | chr3.3:89947091-89947110 | None:intergenic | 50.0% | |
| TTCTTGGAATCCGGCAAAGG+CGG | - | chr3.3:89947259-89947278 | None:intergenic | 50.0% | |
| ! | AAGGGTGTATCCAATGGGGA+GGG | + | chr3.3:89947988-89948007 | MS.gene071422:CDS | 50.0% |
| ! | ACAGAGCGTTTGAGAGAAGC+CGG | - | chr3.3:89947061-89947080 | None:intergenic | 50.0% |
| ! | ATCTTTTCCACCCTCCCCAT+TGG | - | chr3.3:89948001-89948020 | None:intergenic | 50.0% |
| ! | GGCGCCAGTGTTGAATCATT+AGG | + | chr3.3:89948373-89948392 | MS.gene071422:CDS | 50.0% |
| !!! | GGGCTTGGATTGGTGGATTT+TGG | - | chr3.3:89949381-89949400 | None:intergenic | 50.0% |
| AAATTAGGCGGAAGAGGCGG+TGG | - | chr3.3:89947034-89947053 | None:intergenic | 55.0% | |
| AGGGATTCTTCCAAAGGCGG+TGG | - | chr3.3:89947004-89947023 | None:intergenic | 55.0% | |
| AGTTTCGCCGTGAGCGTAGT+CGG | - | chr3.3:89946927-89946946 | None:intergenic | 55.0% | |
| ATCGGCGGTGGAATTAGTGG+TGG | + | chr3.3:89947121-89947140 | MS.gene071422:CDS | 55.0% | |
| CATTCCAAAGCTGCACGGTG+CGG | - | chr3.3:89949216-89949235 | None:intergenic | 55.0% | |
| GAGGTGGAAGAAGGGAAAGG+CGG | + | chr3.3:89947160-89947179 | MS.gene071422:CDS | 55.0% | |
| GATTCTTCCAAAGGCGGTGG+AGG | - | chr3.3:89947001-89947020 | None:intergenic | 55.0% | |
| GCAGATTTCGCTAGCTCGTC+AGG | - | chr3.3:89949439-89949458 | None:intergenic | 55.0% | |
| GCGCCATCTTCTCCTTCTTC+TGG | + | chr3.3:89947214-89947233 | MS.gene071422:CDS | 55.0% | |
| GGAGGGAGGGATTCTTCCAA+AGG | - | chr3.3:89947010-89947029 | None:intergenic | 55.0% | |
| GGATCAGAATGAAGAGGCGG+TGG | - | chr3.3:89946974-89946993 | None:intergenic | 55.0% | |
| GGGAGGGATTCTTCCAAAGG+CGG | - | chr3.3:89947007-89947026 | None:intergenic | 55.0% | |
| GGTGCGGTCGTAATGATGCT+TGG | - | chr3.3:89949200-89949219 | None:intergenic | 55.0% | |
| TCCAAAGGCGGTGGAGGTTT+AGG | - | chr3.3:89946995-89947014 | None:intergenic | 55.0% | |
| TCCTAAACCTCCACCGCCTT+TGG | + | chr3.3:89946991-89947010 | MS.gene071422:CDS | 55.0% | |
| TTACAGCACCGCAAGATCGG+CGG | + | chr3.3:89947106-89947125 | MS.gene071422:CDS | 55.0% | |
| ! | CAAGGGTGTATCCAATGGGG+AGG | + | chr3.3:89947987-89948006 | MS.gene071422:CDS | 55.0% |
| !! | GGTGGATTTTGGGCTCTTGG+CGG | - | chr3.3:89949370-89949389 | None:intergenic | 55.0% |
| GAAGGAGAAGATGGCGCGTG+AGG | - | chr3.3:89947211-89947230 | None:intergenic | 60.0% | |
| GCTCTCTCCGACTACGCTCA+CGG | + | chr3.3:89946917-89946936 | MS.gene071422:CDS | 60.0% | |
| GGCGGTGGAATTAGTGGTGG+AGG | + | chr3.3:89947124-89947143 | MS.gene071422:CDS | 60.0% | |
| GGGAAAGGCGGTGATGCTGA+TGG | + | chr3.3:89947172-89947191 | MS.gene071422:CDS | 60.0% | |
| GGTGTATCCAATGGGGAGGG+TGG | + | chr3.3:89947991-89948010 | MS.gene071422:CDS | 60.0% | |
| GTGAGCGTAGTCGGAGAGAG+CGG | - | chr3.3:89946918-89946937 | None:intergenic | 60.0% | |
| TTGGAATCCGGCAAAGGCGG+TGG | - | chr3.3:89947256-89947275 | None:intergenic | 60.0% | |
| AAGAGGCGGTGGAGGAGGGA+GGG | - | chr3.3:89947023-89947042 | None:intergenic | 65.0% | |
| ACCTGAATGACCGGCGGCGA+AGG | - | chr3.3:89946867-89946886 | None:intergenic | 65.0% | |
| ACGACCGCACCGTGCAGCTT+TGG | + | chr3.3:89949209-89949228 | MS.gene071422:CDS | 65.0% | |
| GAATCCGGCAAAGGCGGTGG+CGG | - | chr3.3:89947253-89947272 | None:intergenic | 65.0% | |
| GCTCGTAATGCCTTCGCCGC+CGG | + | chr3.3:89946854-89946873 | MS.gene071422:CDS | 65.0% | |
| TTAGGCGGAAGAGGCGGTGG+AGG | - | chr3.3:89947031-89947050 | None:intergenic | 65.0% | |
| !! | GGCGGCGAAGGCATTACGAG+CGG | - | chr3.3:89946855-89946874 | None:intergenic | 65.0% |
| CAGCACCGCAAGATCGGCGG+TGG | + | chr3.3:89947109-89947128 | MS.gene071422:CDS | 70.0% | |
| GAAGAGGCGGTGGAGGAGGG+AGG | - | chr3.3:89947024-89947043 | None:intergenic | 70.0% | |
| GATGCCGCCACCGCCTTTGC+CGG | + | chr3.3:89947246-89947265 | MS.gene071422:intron | 70.0% | |
| GCCTTCGCCGCCGGTCATTC+AGG | + | chr3.3:89946863-89946882 | MS.gene071422:CDS | 70.0% | |
| GCGGAAGAGGCGGTGGAGGA+GGG | - | chr3.3:89947027-89947046 | None:intergenic | 70.0% | |
| GTAGTCGGAGAGAGCGGCGC+CGG | - | chr3.3:89946912-89946931 | None:intergenic | 70.0% | |
| GGCGGAAGAGGCGGTGGAGG+AGG | - | chr3.3:89947028-89947047 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 89946767 | 89949729 | 89946767 | ID=MS.gene071422 |
| chr3.3 | mRNA | 89946767 | 89949729 | 89946767 | ID=MS.gene071422.t1;Parent=MS.gene071422 |
| chr3.3 | exon | 89946767 | 89947238 | 89946767 | ID=MS.gene071422.t1.exon1;Parent=MS.gene071422.t1 |
| chr3.3 | CDS | 89946767 | 89947238 | 89946767 | ID=cds.MS.gene071422.t1;Parent=MS.gene071422.t1 |
| chr3.3 | exon | 89947932 | 89948107 | 89947932 | ID=MS.gene071422.t1.exon2;Parent=MS.gene071422.t1 |
| chr3.3 | CDS | 89947932 | 89948107 | 89947932 | ID=cds.MS.gene071422.t1;Parent=MS.gene071422.t1 |
| chr3.3 | exon | 89948307 | 89948530 | 89948307 | ID=MS.gene071422.t1.exon3;Parent=MS.gene071422.t1 |
| chr3.3 | CDS | 89948307 | 89948530 | 89948307 | ID=cds.MS.gene071422.t1;Parent=MS.gene071422.t1 |
| chr3.3 | exon | 89949093 | 89949729 | 89949093 | ID=MS.gene071422.t1.exon4;Parent=MS.gene071422.t1 |
| chr3.3 | CDS | 89949093 | 89949729 | 89949093 | ID=cds.MS.gene071422.t1;Parent=MS.gene071422.t1 |
| Gene Sequence |
| Protein sequence |
