Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40337.t1 | XP_013461937.1 | 99.4 | 652 | 4 | 0 | 23 | 674 | 1 | 652 | 0.00E+00 | 1267.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40337.t1 | Q9LDK9 | 85.9 | 652 | 91 | 1 | 23 | 674 | 1 | 651 | 0.0e+00 | 1117.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40337.t1 | A0A072V2B0 | 99.4 | 652 | 4 | 0 | 23 | 674 | 1 | 652 | 0.0e+00 | 1267.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene40337 | 0.837525 | 4.94E-57 | -1.69E-46 |
| MS.gene049209 | MS.gene40337 | 0.860758 | 1.65E-63 | -1.69E-46 |
| MS.gene050817 | MS.gene40337 | 0.8694 | 3.19E-66 | -1.69E-46 |
| MS.gene050818 | MS.gene40337 | 0.802332 | 5.90E-49 | -1.69E-46 |
| MS.gene050894 | MS.gene40337 | 0.80974 | 1.63E-50 | -1.69E-46 |
| MS.gene052661 | MS.gene40337 | 0.806364 | 8.53E-50 | -1.69E-46 |
| MS.gene052662 | MS.gene40337 | 0.808624 | 2.83E-50 | -1.69E-46 |
| MS.gene052663 | MS.gene40337 | 0.807791 | 4.25E-50 | -1.69E-46 |
| MS.gene053278 | MS.gene40337 | 0.819557 | 1.09E-52 | -1.69E-46 |
| MS.gene054585 | MS.gene40337 | 0.852262 | 5.18E-61 | -1.69E-46 |
| MS.gene055719 | MS.gene40337 | 0.808621 | 2.83E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40337.t1 | MTR_3g109922 | 99.387 | 652 | 4 | 0 | 23 | 674 | 1 | 652 | 0.0 | 1347 |
| MS.gene40337.t1 | MTR_4g076210 | 35.588 | 621 | 374 | 12 | 40 | 655 | 12 | 611 | 7.91e-108 | 347 |
| MS.gene40337.t1 | MTR_5g079920 | 26.415 | 212 | 142 | 2 | 64 | 275 | 46 | 243 | 4.57e-17 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40337.t1 | AT5G11490 | 85.890 | 652 | 91 | 1 | 23 | 674 | 1 | 651 | 0.0 | 1184 |
| MS.gene40337.t1 | AT5G11490 | 85.890 | 652 | 91 | 1 | 23 | 674 | 1 | 651 | 0.0 | 1184 |
| MS.gene40337.t1 | AT5G11490 | 85.930 | 597 | 84 | 0 | 78 | 674 | 1 | 597 | 0.0 | 1095 |
| MS.gene40337.t1 | AT4G23460 | 36.093 | 604 | 362 | 12 | 40 | 638 | 12 | 596 | 3.81e-109 | 351 |
| MS.gene40337.t1 | AT4G11380 | 35.285 | 615 | 372 | 11 | 40 | 649 | 12 | 605 | 7.00e-107 | 345 |
| MS.gene40337.t1 | AT4G11380 | 35.932 | 590 | 359 | 10 | 65 | 649 | 52 | 627 | 3.53e-106 | 343 |
| MS.gene40337.t1 | AT4G23460 | 34.893 | 513 | 317 | 11 | 131 | 638 | 2 | 502 | 2.80e-84 | 282 |
| MS.gene40337.t1 | AT3G55480 | 30.556 | 144 | 98 | 1 | 67 | 210 | 49 | 190 | 1.97e-13 | 74.7 |
| MS.gene40337.t1 | AT3G55480 | 24.407 | 295 | 198 | 10 | 297 | 573 | 351 | 638 | 5.19e-12 | 70.1 |
| MS.gene40337.t1 | AT3G55480 | 24.407 | 295 | 198 | 10 | 297 | 573 | 223 | 510 | 4.37e-12 | 70.1 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 20766 | gene | 64 | 8300 | 64 | ID=MS.gene40337 |
| 20766 | mRNA | 64 | 8300 | 64 | ID=MS.gene40337.t1;Parent=MS.gene40337 |
| 20766 | exon | 8179 | 8300 | 8179 | ID=MS.gene40337.t1.exon1;Parent=MS.gene40337.t1 |
| 20766 | CDS | 8179 | 8300 | 8179 | ID=cds.MS.gene40337.t1;Parent=MS.gene40337.t1 |
| 20766 | exon | 7251 | 7767 | 7251 | ID=MS.gene40337.t1.exon2;Parent=MS.gene40337.t1 |
| 20766 | CDS | 7251 | 7767 | 7251 | ID=cds.MS.gene40337.t1;Parent=MS.gene40337.t1 |
| 20766 | exon | 5579 | 5703 | 5579 | ID=MS.gene40337.t1.exon3;Parent=MS.gene40337.t1 |
| 20766 | CDS | 5579 | 5703 | 5579 | ID=cds.MS.gene40337.t1;Parent=MS.gene40337.t1 |
| 20766 | exon | 4924 | 5122 | 4924 | ID=MS.gene40337.t1.exon4;Parent=MS.gene40337.t1 |
| 20766 | CDS | 4924 | 5122 | 4924 | ID=cds.MS.gene40337.t1;Parent=MS.gene40337.t1 |
| 20766 | exon | 3488 | 3716 | 3488 | ID=MS.gene40337.t1.exon5;Parent=MS.gene40337.t1 |
| 20766 | CDS | 3488 | 3716 | 3488 | ID=cds.MS.gene40337.t1;Parent=MS.gene40337.t1 |
| 20766 | exon | 3163 | 3329 | 3163 | ID=MS.gene40337.t1.exon6;Parent=MS.gene40337.t1 |
| 20766 | CDS | 3163 | 3329 | 3163 | ID=cds.MS.gene40337.t1;Parent=MS.gene40337.t1 |
| 20766 | exon | 2791 | 3000 | 2791 | ID=MS.gene40337.t1.exon7;Parent=MS.gene40337.t1 |
| 20766 | CDS | 2791 | 3000 | 2791 | ID=cds.MS.gene40337.t1;Parent=MS.gene40337.t1 |
| 20766 | exon | 1670 | 1780 | 1670 | ID=MS.gene40337.t1.exon8;Parent=MS.gene40337.t1 |
| 20766 | CDS | 1670 | 1780 | 1670 | ID=cds.MS.gene40337.t1;Parent=MS.gene40337.t1 |
| 20766 | exon | 1365 | 1541 | 1365 | ID=MS.gene40337.t1.exon9;Parent=MS.gene40337.t1 |
| 20766 | CDS | 1365 | 1541 | 1365 | ID=cds.MS.gene40337.t1;Parent=MS.gene40337.t1 |
| 20766 | exon | 64 | 228 | 64 | ID=MS.gene40337.t1.exon10;Parent=MS.gene40337.t1 |
| 20766 | CDS | 64 | 228 | 64 | ID=cds.MS.gene40337.t1;Parent=MS.gene40337.t1 |
| Gene Sequence |
| Protein sequence |
