AlfalfaGEDB | MS.gene83940

M. sativa cultivar XinJiangDaYe / MS.gene83940

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF02183.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83940.t1	XP_003613642.1	96.6	236	2	1	1	230	48	283	6.50E-100	373.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83940.t1	Q8LC03	63.5	233	75	3	7	230	63	294	3.1e-50	199.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83940.t1	G7KB59	96.6	236	2	1	1	230	48	283	4.7e-100	373.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene83940.t1	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene83940	0.837102	6.34E-57	-1.69E-46
MS.gene049341	MS.gene83940	0.81102	8.63E-51	-1.69E-46
MS.gene049350	MS.gene83940	0.838621	2.58E-57	-1.69E-46
MS.gene049711	MS.gene83940	0.813904	2.02E-51	-1.69E-46
MS.gene049807	MS.gene83940	0.828796	7.37E-55	-1.69E-46
MS.gene049824	MS.gene83940	0.816436	5.54E-52	-1.69E-46
MS.gene049825	MS.gene83940	0.804094	2.55E-49	-1.69E-46
MS.gene049887	MS.gene83940	0.838807	2.31E-57	-1.69E-46
MS.gene050807	MS.gene83940	0.842649	2.27E-58	-1.69E-46
MS.gene051247	MS.gene83940	0.800102	1.69E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83940.t1	MTR_5g039000	96.610	236	2	1	1	230	48	283	4.40e-167	462
MS.gene83940.t1	MTR_8g468210	83.966	237	27	5	1	230	50	282	6.18e-127	360
MS.gene83940.t1	MTR_6g011610	54.812	239	72	6	1	227	58	272	1.17e-74	228
MS.gene83940.t1	MTR_6g011610	57.209	215	65	4	17	227	62	253	2.51e-74	226
MS.gene83940.t1	MTR_7g010020	54.148	229	94	7	1	223	48	271	2.23e-70	216
MS.gene83940.t1	MTR_8g089895	44.886	176	88	3	18	191	40	208	6.43e-39	137
MS.gene83940.t1	MTR_6g007647	64.000	100	36	0	26	125	29	128	1.02e-38	135
MS.gene83940.t1	MTR_6g007647	64.000	100	36	0	26	125	63	162	3.01e-38	134
MS.gene83940.t1	MTR_3g086790	57.500	120	48	1	17	133	47	166	7.02e-38	134
MS.gene83940.t1	MTR_3g080100	54.225	142	54	2	15	145	5	146	7.58e-38	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83940.t1	AT1G69780	65.690	239	72	4	1	230	57	294	2.92e-103	301
MS.gene83940.t1	AT1G26960	63.426	216	59	5	17	230	58	255	7.08e-87	258
MS.gene83940.t1	AT3G01220	54.419	215	81	6	15	223	70	273	6.51e-69	213
MS.gene83940.t1	AT5G15150	48.165	218	85	6	17	223	100	300	8.69e-58	186
MS.gene83940.t1	AT5G65310	50.602	166	75	3	18	176	39	204	8.62e-42	144
MS.gene83940.t1	AT5G65310	50.602	166	75	3	18	176	57	222	1.54e-41	144
MS.gene83940.t1	AT4G40060	57.143	133	52	3	11	139	39	170	5.45e-38	134
MS.gene83940.t1	AT2G22430	67.010	97	32	0	29	125	61	157	1.09e-37	134
MS.gene83940.t1	AT3G01470	63.000	100	37	0	26	125	64	163	6.16e-37	130
MS.gene83940.t1	AT1G27045	44.737	152	77	2	4	148	41	192	3.12e-28	107

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Find 33 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTGTTGCTCCAACCA+TGG	0.592621	5.4:+28986172	None:intergenic
AACCATATAGCAACTTGTCT+AGG	0.569003	5.4:+28987445	None:intergenic
AACCTAGACAAGTTGCTATA+TGG	0.331625	5.4:-28987447	MS.gene83940:CDS
AACCTGAACAAAGAAACAGA+AGG	0.692102	5.4:-28986442	MS.gene83940:CDS
AAGCTGGAGAGAAGAAGAGG+AGG	0.613532	5.4:-28987570	MS.gene83940:CDS
AGCTGAGCAATTCCACCTGA+AGG	0.558857	5.4:+28986289	None:intergenic
AGGTTCTGCTTGTTGTATGT+TGG	0.535809	5.4:+28986332	None:intergenic
ATCCTTCTGTTTCTTTGTTC+AGG	0.195256	5.4:+28986440	None:intergenic
CACAAGCTGGAGAGAAGAAG+AGG	0.557400	5.4:-28987573	MS.gene83940:CDS
CCACCTGAAGGCCTAGCAGA+AGG	0.595631	5.4:+28986301	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAACGTAATTAACTGAAGTT+TGG	-	chr5.4:28986634-28986653	MS.gene83940:intron	30.0%
CCTCAAGAACAATTATATTG+AGG	+	chr5.4:28987202-28987221	None:intergenic	30.0%
CCTCAATATAATTGTTCTTG+AGG	-	chr5.4:28987199-28987218	MS.gene83940:intron	30.0%
GAAGAAGATTTATCAGATGA+TGG	-	chr5.4:28986213-28986232	MS.gene83940:CDS	30.0%
GTCTTTACATATGACAAACA+AGG	+	chr5.4:28986664-28986683	None:intergenic	30.0%
GTTTGTCATATGTAAAGACT+TGG	-	chr5.4:28986665-28986684	MS.gene83940:intron	30.0%
TCATCTGATAAATCTTCTTC+AGG	+	chr5.4:28986213-28986232	None:intergenic	30.0%
TCTTTGACCATTTGAATTTC+TGG	+	chr5.4:28987567-28987586	None:intergenic	30.0%
AACCATATAGCAACTTGTCT+AGG	+	chr5.4:28986369-28986388	None:intergenic	35.0%
AACCTAGACAAGTTGCTATA+TGG	-	chr5.4:28986364-28986383	MS.gene83940:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	28986165	28987668	28986165	ID=MS.gene83940
chr5.4	mRNA	28986165	28987668	28986165	ID=MS.gene83940.t1;Parent=MS.gene83940
chr5.4	exon	28987315	28987668	28987315	ID=MS.gene83940.t1.exon1;Parent=MS.gene83940.t1
chr5.4	CDS	28987315	28987668	28987315	ID=cds.MS.gene83940.t1;Parent=MS.gene83940.t1
chr5.4	exon	28986165	28986503	28986165	ID=MS.gene83940.t1.exon2;Parent=MS.gene83940.t1
chr5.4	CDS	28986165	28986503	28986165	ID=cds.MS.gene83940.t1;Parent=MS.gene83940.t1

Gene Sequence

>MS.gene83940

ATGTCATTTTCATCAGGGATTGAACTTGGAGAAGAAGCAAATATACCTGAAGAAGATTTATCAGATGATGGATCACAAGCTGGAGAGAAGAAGAGGAGGCTTAATATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAACTTGGTAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTTAACTTGCAACCTAGACAAGTTGCTATATGGTTTCAAAATAGAAGGGCTAGATGGAAGACAAAGCAGTTGGAAAAAGACTATGATGTTCTTAAAAGACAATATGATGCTATTAAGTTAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAAGCTGAGGTTTGTAGTTTTCTTTTAACTCATAATCATAGTTCTATTATATTACAGTTTTAGAGGTTTATGCAACGGCATGACAACTACAATTGCATTTATTTTACTGTAATGTAAAAGTTTGCAACGTAATTAACTGAAGTTTGGTGTTCCTTGTTTGTCATATGTAAAGACTTGGTTATTAATAAACTTTGCCGTTACAAAAAAAAAATTAACCGAAATTCAAAATCATACTCATAATAACACAATTTCCAATTAAATATATTGTACTTTAGTTGCTTGCTTTCATTTAATTTATTTGCTTGAGTTATTATTTTTTATAACAATGGGAAAAATAAATAAATGATGAAGAACTAAAGACTTGCTTGATTTTATTTTTAAACTTTTGTAGAAATAATACTATTTGGTAATGATGATACTTCTTTTTGATGTAGTTATGCTTTTTTGACTATCTGCATAGTTTTCAGAACCTTTCCTTTCACCTATTCTCTAACATCAACTTTATAAAAAGCTGCTTTTTCCAATCACCTAAAAGTAAATTAATCAAGATCCAATGATTTTATTTTCACTTCAATGACTTCTTTCTCTTAAATAGGCTACTAGTTTTCCACATAAAAATGTCTCATCTTACCATATTATAAAGTTTCTAGAGATTTAATTTTATGAAATTATCACAATTGCAATTTTGACCTCAATATAATTGTTCTTGAGGTCTTTGCAACGACATCACAACTGTAATCAATATCGTATCAGCCATGCGCAGTTTCTTGCCACGAAATTAGAACCGAACCAATAATTAGATAATTTTAATTTGTTACAGATATTGGCATTGAAAAATAGAGAACCAACAGAATCAATCAACCTGAACAAAGAAACAGAAGGATCAAGCAGCAATAGAAGTGAGAACAGTTCAGATATCAAGTTGGATATGTCAAGAACACCAGCAAGTGATAGTCCTCTTTCTACACACCAACATACAACAAGCAGAACCTTCTTTCCACCTTCTGCTAGGCCTTCAGGTGGAATTGCTCAGCTTTTCCAAACTTCTTCAAGGCCAGAAATTCAAATGGTCAAAGAAGAAAGTTTAAGCAACATGTTTTGTGGTATGGATGATCAAGCTGGATTTTGGCCATGGTTGGAGCAACAACATTTCAATTGA

Protein sequence

>MS.gene83940.t1

MSFSSGIELGEEANIPEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAIKLDNDALQAQNQKLQAEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDMSRTPASDSPLSTHQHTTSRTFFPPSARPSGGIAQLFQTSSRPEIQMVKEESLSNMFCGMDDQAGFWPWLEQQHFN