AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27714

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27714.t1 MTR_7g076940 100.000 259 0 0 1 259 1 259 0.0 528
MS.gene27714.t1 MTR_5g021800 95.736 258 11 0 1 258 1 258 0.0 508
MS.gene27714.t1 MTR_2g015360 41.026 117 63 3 98 214 51 161 7.67e-19 82.0
MS.gene27714.t1 MTR_3g035710 40.741 108 57 3 107 214 1 101 3.18e-16 73.9
MS.gene27714.t1 MTR_0002s0800 39.048 105 49 3 115 215 3 96 7.39e-14 68.9
MS.gene27714.t1 MTR_0002s0360 39.048 105 49 3 115 215 3 96 7.39e-14 68.9
MS.gene27714.t1 MTR_3g037420 38.144 97 53 3 119 215 8 97 2.20e-11 60.5
MS.gene27714.t1 MTR_4g051430 25.592 211 100 5 29 214 163 341 7.19e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27714.t1 AT4G36130 93.023 258 18 0 1 258 1 258 0.0 498
MS.gene27714.t1 AT2G18020 92.636 258 19 0 1 258 1 258 4.00e-175 483
MS.gene27714.t1 AT3G51190 84.519 239 36 1 1 238 1 239 3.45e-153 427
MS.gene27714.t1 ATCG00830 32.632 190 108 4 29 214 60 233 1.46e-25 102
MS.gene27714.t1 ATCG01310 32.632 190 108 4 29 214 60 233 1.46e-25 102
MS.gene27714.t1 AT2G44065 36.691 139 80 3 97 234 58 189 9.27e-17 77.0
MS.gene27714.t1 AT2G44065 36.691 139 80 3 97 234 58 189 9.27e-17 77.0
MS.gene27714.t1 AT2G44065 36.691 139 80 3 97 234 58 189 9.27e-17 77.0

Find 97 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGAGGACTGGTCGTCTT+AGG 0.241658 7.2:-28868113 MS.gene27714:CDS
AATCTAAACTGCTTATTTAT+CGG 0.245431 7.2:+28868062 None:intergenic
GTCACTTGGCACAATCTTCT+TGG 0.305373 7.2:+28868371 None:intergenic
GAACTTGTGGTAAGCATTAC+CGG 0.310318 7.2:+28868287 None:intergenic
GTTTATTTACTGCGGTAAAA+AGG 0.324875 7.2:-28869303 MS.gene27714:CDS
CCTCCGTGGGGATGCTCAAC+AGG 0.334759 7.2:+28868216 None:intergenic
GCCATGATTGGGCAAGTTGC+TGG 0.355007 7.2:-28868342 MS.gene27714:CDS
GAAGTCGAGGGAACGGAAAC+GGG 0.358567 7.2:+28869481 None:intergenic
CAAGAGGACTGGTCGTCTTA+GGG 0.368154 7.2:-28868112 MS.gene27714:CDS
AGTGACTGCAGGGCCATGAT+TGG 0.371357 7.2:-28868354 MS.gene27714:CDS
GGAAACGGGCGGGGCCTTTG+CGG 0.378068 7.2:+28869495 None:intergenic
TACCTAGAGGTATCATTATC+GGG 0.400292 7.2:+28869140 None:intergenic
GCTCCTTCTGTTTCTGATAA+CGG 0.408848 7.2:+28869360 None:intergenic
ATACCTAGAGGTATCATTAT+CGG 0.410207 7.2:+28869139 None:intergenic
GGCCTTTGCGGTGGTGTGTG+TGG 0.413149 7.2:+28869507 None:intergenic
GCCTTTGCGGTGGTGTGTGT+GGG 0.415084 7.2:+28869508 None:intergenic
TTACAAATCACAGCACCTTC+AGG 0.419108 7.2:+28869239 None:intergenic
GCTGCTGAGGGTTTGTATAC+CGG 0.439273 7.2:-28869329 MS.gene27714:CDS
ACCAGCAACTTGCCCAATCA+TGG 0.440792 7.2:+28868341 None:intergenic
CGAGGGAACGGAAACGGGCG+GGG 0.441434 7.2:+28869486 None:intergenic
AACTGAGAAGCCAATGTTGA+AGG 0.451466 7.2:-28868310 MS.gene27714:CDS
CGTCGGTGACGACTCCTTTG+AGG 0.452604 7.2:+28869441 None:intergenic
GGAGGTAATCACCAACATAT+TGG 0.453068 7.2:-28868195 MS.gene27714:CDS
TCGAGGGAACGGAAACGGGC+GGG 0.454887 7.2:+28869485 None:intergenic
CTCATTGCTGCCAAGAGGAC+TGG 0.455821 7.2:-28868123 MS.gene27714:CDS
GTCAGACGTGATGCTCCTCC+TGG 0.456100 7.2:-28868159 MS.gene27714:CDS
CGAAGTCGAGGGAACGGAAA+CGG 0.463299 7.2:+28869480 None:intergenic
GCATTACCGGCCTTCAACAT+TGG 0.473847 7.2:+28868300 None:intergenic
TACAGGATCAAGCTTCCATC+TGG 0.475040 7.2:-28868396 MS.gene27714:intron
AGATTGTGCCAAGTGACTGC+AGG 0.475752 7.2:-28868365 MS.gene27714:CDS
CCTCTTAGATCTATTCCTGA+AGG 0.484222 7.2:-28869254 MS.gene27714:CDS
AACTGTTGGCCTAAGGTTCG+TGG 0.487779 7.2:-28868252 MS.gene27714:CDS
TGTCATCCGTGCCCAACGTA+AGG 0.492175 7.2:-28869552 MS.gene27714:CDS
CGTTTCCGTTCCCTCGACTT+CGG 0.496555 7.2:-28869479 MS.gene27714:CDS
TCCCACACACACCACCGCAA+AGG 0.498632 7.2:-28869509 MS.gene27714:CDS
GTGACTGCAGGGCCATGATT+GGG 0.501153 7.2:-28868353 MS.gene27714:CDS
GCTCCTCCTGGACAGAAGGT+TGG 0.508354 7.2:-28868147 MS.gene27714:CDS
GGAACCTGCTCCCTTACGTT+GGG 0.510705 7.2:+28869541 None:intergenic
CGTGCCCAACGTAAGGGAGC+AGG 0.512987 7.2:-28869545 MS.gene27714:CDS
TCCTCTTCACTCTGAACTTG+TGG 0.513229 7.2:+28868274 None:intergenic
CCTAAGACGACCAGTCCTCT+TGG 0.514272 7.2:+28868113 None:intergenic
ATTGGGCAAGTTGCTGGTGG+TGG 0.517875 7.2:-28868336 MS.gene27714:CDS
ATGAGACCAACCTTCTGTCC+AGG 0.521573 7.2:+28868141 None:intergenic
AACGGGCGGGGCCTTTGCGG+TGG 0.529015 7.2:+28869498 None:intergenic
ATCATGGCCCTGCAGTCACT+TGG 0.530422 7.2:+28868357 None:intergenic
GCAAGAGGAGCACCACGACC+TGG 0.531863 7.2:+28869407 None:intergenic
TGCTGTGATTTGTAATGTTG+AGG 0.534385 7.2:-28869231 MS.gene27714:CDS
ACCGACGTCATCCACGATCC+AGG 0.536026 7.2:-28869425 MS.gene27714:CDS
AGCATCACGTCTGACAGTAC+TGG 0.537912 7.2:+28868167 None:intergenic
TTGGTGATTACCTCCTCCGT+GGG 0.541006 7.2:+28868203 None:intergenic
GTTGAGCATCCCCACGGAGG+AGG 0.543276 7.2:-28868213 MS.gene27714:CDS
GTCATCCACGATCCAGGTCG+TGG 0.543374 7.2:-28869419 MS.gene27714:CDS
CGTTGCGTTCGCCGAAGTCG+AGG 0.545445 7.2:+28869468 None:intergenic
GAAGAGGAACTGTTGGCCTA+AGG 0.546745 7.2:-28868259 MS.gene27714:CDS
TGTAATGTTGAGGGTCATGT+TGG 0.553570 7.2:-28869221 MS.gene27714:CDS
TCGTGGTGCTCCTCTTGCTA+AGG 0.557816 7.2:-28869402 MS.gene27714:CDS
ATGATTGGGCAAGTTGCTGG+TGG 0.561494 7.2:-28868339 MS.gene27714:CDS
CTTCTGTTTCTGATAACGGA+AGG 0.563357 7.2:+28869364 None:intergenic
TGATGCTCCTCCTGGACAGA+AGG 0.566122 7.2:-28868151 MS.gene27714:CDS
CGGAACCTGCTCCCTTACGT+TGG 0.568166 7.2:+28869540 None:intergenic
TCTGATAACGGAAGGGATGA+CGG 0.568851 7.2:+28869372 None:intergenic
GCTGTGATTTGTAATGTTGA+GGG 0.572615 7.2:-28869230 MS.gene27714:CDS
TTCTGTTTCTGATAACGGAA+GGG 0.573577 7.2:+28869365 None:intergenic
GAACGCAACGGTTACCTCAA+AGG 0.574638 7.2:-28869455 MS.gene27714:CDS
GTCGAGGGAACGGAAACGGG+CGG 0.575776 7.2:+28869484 None:intergenic
GTTCGCCGAAGTCGAGGGAA+CGG 0.578749 7.2:+28869474 None:intergenic
CTGCTCCCTTACGTTGGGCA+CGG 0.579845 7.2:+28869546 None:intergenic
GAGAAGCCAATGTTGAAGGC+CGG 0.581735 7.2:-28868306 MS.gene27714:CDS
TCAGAGTGAAGAGGAACTGT+TGG 0.582492 7.2:-28868266 MS.gene27714:CDS
GTCATCCGTGCCCAACGTAA+GGG 0.585900 7.2:-28869551 MS.gene27714:CDS
GTGTGTGTGGGATTTGAAAA+CGG 0.586676 7.2:+28869520 None:intergenic
CCTTCAGGAATAGATCTAAG+AGG 0.588316 7.2:+28869254 None:intergenic
ACCGCAGTAAATAAACTGAC+CGG 0.589138 7.2:+28869310 None:intergenic
GAGCACCACGACCTGGATCG+TGG 0.593947 7.2:+28869414 None:intergenic
ATAGCAACACCACGAACCTT+AGG 0.594313 7.2:+28868243 None:intergenic
ACCGGTCAGTTTATTTACTG+CGG 0.597635 7.2:-28869311 MS.gene27714:CDS
ACAATCTTCTTGGCACCAGA+TGG 0.597976 7.2:+28868381 None:intergenic
GATTGTGCCAAGTGACTGCA+GGG 0.598947 7.2:-28868364 MS.gene27714:CDS
CTCGACTTCGGCGAACGCAA+CGG 0.608500 7.2:-28869467 MS.gene27714:CDS
GTTGCGTTCGCCGAAGTCGA+GGG 0.613842 7.2:+28869469 None:intergenic
AAGAGGACTGGTCGTCTTAG+GGG 0.622786 7.2:-28868111 MS.gene27714:CDS
CGGAAAGTCACCTTAGCAAG+AGG 0.624941 7.2:+28869392 None:intergenic
GTTGGTGATTACCTCCTCCG+TGG 0.630355 7.2:+28868202 None:intergenic
ACCCCGATAATGATACCTCT+AGG 0.637049 7.2:-28869142 MS.gene27714:intron
TTGGTCTCATTGCTGCCAAG+AGG 0.653221 7.2:-28868128 MS.gene27714:CDS
TACTGGCATGACCAATATGT+TGG 0.654768 7.2:+28868184 None:intergenic
ACCACAAGTTCAGAGTGAAG+AGG 0.655234 7.2:-28868275 MS.gene27714:CDS
AATCCTGTTGAGCATCCCCA+CGG 0.655918 7.2:-28868219 MS.gene27714:CDS
ACCTAGAGGTATCATTATCG+GGG 0.665372 7.2:+28869141 None:intergenic
CTTCCGTTATCAGAAACAGA+AGG 0.665450 7.2:-28869363 MS.gene27714:CDS
GCAAAACATTACCAACAACA+AGG 0.667504 7.2:+28869276 None:intergenic
GAGGGTCATGTTGGTGACCG+TGG 0.688077 7.2:-28869212 MS.gene27714:CDS
AGACCAACCTTCTGTCCAGG+AGG 0.695738 7.2:+28868144 None:intergenic
CAAAACATTACCAACAACAA+GGG 0.700199 7.2:+28869277 None:intergenic
ACCTGGATCGTGGATGACGT+CGG 0.724990 7.2:+28869424 None:intergenic
CCTGTTGAGCATCCCCACGG+AGG 0.744930 7.2:-28868216 MS.gene27714:CDS
TGGTGATTACCTCCTCCGTG+GGG 0.779827 7.2:+28868204 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCGATTAATATTAATTTA+AGG - chr7.2:28869116-28869135 MS.gene27714:intron 10.0%
!!! AAATTTTTAATCAGATTTTA+AGG + chr7.2:28869010-28869029 None:intergenic 10.0%
!!! CAATATAATACTTTTTTATT+AGG - chr7.2:28869151-28869170 MS.gene27714:CDS 10.0%
!!! TTAAAAATTTATACCTTTTT+TGG - chr7.2:28869020-28869039 MS.gene27714:intron 10.0%
!!! TTATTTGATGTTATTTTTAA+TGG - chr7.2:28868543-28868562 MS.gene27714:intron 10.0%
!!! AAATTTGTTTTGTAAATTCA+TGG - chr7.2:28868899-28868918 MS.gene27714:intron 15.0%
!!! GTTTGATTATATTATGATTT+TGG - chr7.2:28868567-28868586 MS.gene27714:intron 15.0%
!!! TATCATTTAAAATCCAAAAA+AGG + chr7.2:28869036-28869055 None:intergenic 15.0%
!!! TATGATTTTGGAATTAAATT+TGG - chr7.2:28868579-28868598 MS.gene27714:intron 15.0%
!!! TTATATTTTTGGATTGATTT+TGG - chr7.2:28868755-28868774 MS.gene27714:intron 15.0%
!! AAGAATAAAAATATACCTAG+AGG + chr7.2:28868510-28868529 None:intergenic 20.0%
!! AATTAAATTTGGTATTTGAG+TGG - chr7.2:28868590-28868609 MS.gene27714:intron 20.0%
!! TCAATAGAAATATTTGATCT+GGG - chr7.2:28868623-28868642 MS.gene27714:intron 20.0%
!! TTCAATAGAAATATTTGATC+TGG - chr7.2:28868622-28868641 MS.gene27714:intron 20.0%
!!! AAAATACTCTGAAAACTAAT+TGG + chr7.2:28869064-28869083 None:intergenic 20.0%
!!! GTATTTTTAGTAGATTGAAT+TGG - chr7.2:28868777-28868796 MS.gene27714:intron 20.0%
! CTAGCACAATATAAACAAAT+CGG + chr7.2:28868954-28868973 None:intergenic 25.0%
! TAGCACAATATAAACAAATC+GGG + chr7.2:28868953-28868972 None:intergenic 25.0%
! TGATTTCAATGCAGAAAATT+GGG - chr7.2:28868979-28868998 MS.gene27714:intron 25.0%
! TTGATTTCAATGCAGAAAAT+TGG - chr7.2:28868978-28868997 MS.gene27714:intron 25.0%
! TTTAGGTGTATACTTGATTT+AGG - chr7.2:28869188-28869207 MS.gene27714:CDS 25.0%
!! GAATTGATGTTAGTGTTTTT+CGG - chr7.2:28868711-28868730 MS.gene27714:intron 25.0%
!!! AGGGTTTTGTTTGATTATTT+AGG - chr7.2:28869171-28869190 MS.gene27714:CDS 25.0%
!!! CAAATTTGATTTGTTTAAGC+TGG - chr7.2:28868827-28868846 MS.gene27714:intron 25.0%
!!! TGAAATGAGTTTTGTTATAC+AGG - chr7.2:28869221-28869240 MS.gene27714:CDS 25.0%
AGATTGAATTGGAATTGAGT+GGG - chr7.2:28868788-28868807 MS.gene27714:intron 30.0%
CAAAACATTACCAACAACAA+GGG + chr7.2:28868360-28868379 None:intergenic 30.0%
GTTTATTTACTGCGGTAAAA+AGG - chr7.2:28868331-28868350 MS.gene27714:CDS 30.0%
TAGATTGAATTGGAATTGAG+TGG - chr7.2:28868787-28868806 MS.gene27714:intron 30.0%
! ATACTCTGAAAACTAATTGG+AGG + chr7.2:28869061-28869080 None:intergenic 30.0%
!! ATACCTAGAGGTATCATTAT+CGG + chr7.2:28868498-28868517 None:intergenic 30.0%
!! ATGTTAGTGTTTTTCGGTTA+TGG - chr7.2:28868717-28868736 MS.gene27714:intron 30.0%
ATCGGGTTCAAAATTCATCT+TGG + chr7.2:28868936-28868955 None:intergenic 35.0%
GCAAAACATTACCAACAACA+AGG + chr7.2:28868361-28868380 None:intergenic 35.0%
TGAAGTGAAGTCATGGATAT+AGG - chr7.2:28869091-28869110 MS.gene27714:intron 35.0%
! GCTGTGATTTGTAATGTTGA+GGG - chr7.2:28868404-28868423 MS.gene27714:intron 35.0%
! TGCTGTGATTTGTAATGTTG+AGG - chr7.2:28868403-28868422 MS.gene27714:intron 35.0%
!! TACCTAGAGGTATCATTATC+GGG + chr7.2:28868497-28868516 None:intergenic 35.0%
!! TTCTGTTTCTGATAACGGAA+GGG + chr7.2:28868272-28868291 None:intergenic 35.0%
AACTGAGAAGCCAATGTTGA+AGG - chr7.2:28869324-28869343 MS.gene27714:CDS 40.0%
ACCGCAGTAAATAAACTGAC+CGG + chr7.2:28868327-28868346 None:intergenic 40.0%
ACCGGTCAGTTTATTTACTG+CGG - chr7.2:28868323-28868342 MS.gene27714:CDS 40.0%
CCTCTTAGATCTATTCCTGA+AGG - chr7.2:28868380-28868399 MS.gene27714:CDS 40.0%
CCTTCAGGAATAGATCTAAG+AGG + chr7.2:28868383-28868402 None:intergenic 40.0%
CTTCCGTTATCAGAAACAGA+AGG - chr7.2:28868271-28868290 MS.gene27714:CDS 40.0%
GAACTTGTGGTAAGCATTAC+CGG + chr7.2:28869350-28869369 None:intergenic 40.0%
GGAGGTAATCACCAACATAT+TGG - chr7.2:28869439-28869458 MS.gene27714:CDS 40.0%
GTGTGTGTGGGATTTGAAAA+CGG + chr7.2:28868117-28868136 None:intergenic 40.0%
TACTGGCATGACCAATATGT+TGG + chr7.2:28869453-28869472 None:intergenic 40.0%
TCATGACTGAAGTGAAGTCA+TGG - chr7.2:28869084-28869103 MS.gene27714:intron 40.0%
TGTAATGTTGAGGGTCATGT+TGG - chr7.2:28868413-28868432 MS.gene27714:intron 40.0%
TTACAAATCACAGCACCTTC+AGG + chr7.2:28868398-28868417 None:intergenic 40.0%
! AAAAAGGCTACCCTTGTTGT+TGG - chr7.2:28868347-28868366 MS.gene27714:CDS 40.0%
! AAGCTCTAGCAAAAACACCA+CGG + chr7.2:28868442-28868461 None:intergenic 40.0%
!! ACCTAGAGGTATCATTATCG+GGG + chr7.2:28868496-28868515 None:intergenic 40.0%
!! CTTCTGTTTCTGATAACGGA+AGG + chr7.2:28868273-28868292 None:intergenic 40.0%
!! GCTCCTTCTGTTTCTGATAA+CGG + chr7.2:28868277-28868296 None:intergenic 40.0%
ACAATCTTCTTGGCACCAGA+TGG + chr7.2:28869256-28869275 None:intergenic 45.0%
ACCACAAGTTCAGAGTGAAG+AGG - chr7.2:28869359-28869378 MS.gene27714:CDS 45.0%
ACCCCGATAATGATACCTCT+AGG - chr7.2:28868492-28868511 MS.gene27714:intron 45.0%
ATAGCAACACCACGAACCTT+AGG + chr7.2:28869394-28869413 None:intergenic 45.0%
GTCACTTGGCACAATCTTCT+TGG + chr7.2:28869266-28869285 None:intergenic 45.0%
TACAGGATCAAGCTTCCATC+TGG - chr7.2:28869238-28869257 MS.gene27714:CDS 45.0%
TCAGAGTGAAGAGGAACTGT+TGG - chr7.2:28869368-28869387 MS.gene27714:CDS 45.0%
TCCTCTTCACTCTGAACTTG+TGG + chr7.2:28869363-28869382 None:intergenic 45.0%
!! GGTGTTTTTGCTAGAGCTTC+TGG - chr7.2:28868443-28868462 MS.gene27714:intron 45.0%
!! TCTGATAACGGAAGGGATGA+CGG + chr7.2:28868265-28868284 None:intergenic 45.0%
!!! AATATAATACTTTTTTATTA+GGG - chr7.2:28869152-28869171 MS.gene27714:CDS 5.0%
!!! TTATTATTTGATTATATTTT+TGG - chr7.2:28868744-28868763 MS.gene27714:intron 5.0%
AATCCTGTTGAGCATCCCCA+CGG - chr7.2:28869415-28869434 MS.gene27714:CDS 50.0%
ACCAGCAACTTGCCCAATCA+TGG + chr7.2:28869296-28869315 None:intergenic 50.0%
AGATTGTGCCAAGTGACTGC+AGG - chr7.2:28869269-28869288 MS.gene27714:CDS 50.0%
AGCATCACGTCTGACAGTAC+TGG + chr7.2:28869470-28869489 None:intergenic 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr7.2:28869496-28869515 None:intergenic 50.0%
ATGATTGGGCAAGTTGCTGG+TGG - chr7.2:28869295-28869314 MS.gene27714:CDS 50.0%
CGGAAAGTCACCTTAGCAAG+AGG + chr7.2:28868245-28868264 None:intergenic 50.0%
GAACGCAACGGTTACCTCAA+AGG - chr7.2:28868179-28868198 MS.gene27714:CDS 50.0%
GAGAAGCCAATGTTGAAGGC+CGG - chr7.2:28869328-28869347 MS.gene27714:CDS 50.0%
GATTGTGCCAAGTGACTGCA+GGG - chr7.2:28869270-28869289 MS.gene27714:CDS 50.0%
GCATTACCGGCCTTCAACAT+TGG + chr7.2:28869337-28869356 None:intergenic 50.0%
GCTGCTGAGGGTTTGTATAC+CGG - chr7.2:28868305-28868324 MS.gene27714:CDS 50.0%
TTGGTCTCATTGCTGCCAAG+AGG - chr7.2:28869506-28869525 MS.gene27714:CDS 50.0%
! AACTGTTGGCCTAAGGTTCG+TGG - chr7.2:28869382-28869401 MS.gene27714:CDS 50.0%
! GAAGAGGAACTGTTGGCCTA+AGG - chr7.2:28869375-28869394 MS.gene27714:CDS 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr7.2:28868293-28868312 MS.gene27714:CDS 50.0%
! TTGGTGATTACCTCCTCCGT+GGG + chr7.2:28869434-28869453 None:intergenic 50.0%
!! AAGAGGACTGGTCGTCTTAG+GGG - chr7.2:28869523-28869542 MS.gene27714:CDS 50.0%
!! CAAGAGGACTGGTCGTCTTA+GGG - chr7.2:28869522-28869541 MS.gene27714:CDS 50.0%
ACCTGGATCGTGGATGACGT+CGG + chr7.2:28868213-28868232 None:intergenic 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr7.2:28869493-28869512 None:intergenic 55.0%
AGTGACTGCAGGGCCATGAT+TGG - chr7.2:28869280-28869299 MS.gene27714:CDS 55.0%
ATCATGGCCCTGCAGTCACT+TGG + chr7.2:28869280-28869299 None:intergenic 55.0%
ATTGGGCAAGTTGCTGGTGG+TGG - chr7.2:28869298-28869317 MS.gene27714:CDS 55.0%
CCTAAGACGACCAGTCCTCT+TGG + chr7.2:28869524-28869543 None:intergenic 55.0%
CGAAGTCGAGGGAACGGAAA+CGG + chr7.2:28868157-28868176 None:intergenic 55.0%
CGTTTCCGTTCCCTCGACTT+CGG - chr7.2:28868155-28868174 MS.gene27714:CDS 55.0%
CTCATTGCTGCCAAGAGGAC+TGG - chr7.2:28869511-28869530 MS.gene27714:CDS 55.0%
GAAGTCGAGGGAACGGAAAC+GGG + chr7.2:28868156-28868175 None:intergenic 55.0%
GCCATGATTGGGCAAGTTGC+TGG - chr7.2:28869292-28869311 MS.gene27714:CDS 55.0%
GGAACCTGCTCCCTTACGTT+GGG + chr7.2:28868096-28868115 None:intergenic 55.0%
GTCATCCGTGCCCAACGTAA+GGG - chr7.2:28868083-28868102 MS.gene27714:CDS 55.0%
GTGACTGCAGGGCCATGATT+GGG - chr7.2:28869281-28869300 MS.gene27714:CDS 55.0%
TCGTGGTGCTCCTCTTGCTA+AGG - chr7.2:28868232-28868251 MS.gene27714:CDS 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr7.2:28869483-28869502 MS.gene27714:CDS 55.0%
TGGTGATTACCTCCTCCGTG+GGG + chr7.2:28869433-28869452 None:intergenic 55.0%
TGTCATCCGTGCCCAACGTA+AGG - chr7.2:28868082-28868101 MS.gene27714:CDS 55.0%
! GGAGCTTTTCGTTGCTGCTG+AGG - chr7.2:28868292-28868311 MS.gene27714:CDS 55.0%
!! CCAAGAGGACTGGTCGTCTT+AGG - chr7.2:28869521-28869540 MS.gene27714:CDS 55.0%
!! GTTGGTGATTACCTCCTCCG+TGG + chr7.2:28869435-28869454 None:intergenic 55.0%
ACCGACGTCATCCACGATCC+AGG - chr7.2:28868209-28868228 MS.gene27714:CDS 60.0%
CGGAACCTGCTCCCTTACGT+TGG + chr7.2:28868097-28868116 None:intergenic 60.0%
CGTCGGTGACGACTCCTTTG+AGG + chr7.2:28868196-28868215 None:intergenic 60.0%
CTCGACTTCGGCGAACGCAA+CGG - chr7.2:28868167-28868186 MS.gene27714:CDS 60.0%
CTGCTCCCTTACGTTGGGCA+CGG + chr7.2:28868091-28868110 None:intergenic 60.0%
GCCTTTGCGGTGGTGTGTGT+GGG + chr7.2:28868129-28868148 None:intergenic 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr7.2:28869487-28869506 MS.gene27714:CDS 60.0%
GTCAGACGTGATGCTCCTCC+TGG - chr7.2:28869475-28869494 MS.gene27714:CDS 60.0%
GTCATCCACGATCCAGGTCG+TGG - chr7.2:28868215-28868234 MS.gene27714:CDS 60.0%
GTTCGCCGAAGTCGAGGGAA+CGG + chr7.2:28868163-28868182 None:intergenic 60.0%
GTTGCGTTCGCCGAAGTCGA+GGG + chr7.2:28868168-28868187 None:intergenic 60.0%
TCCCACACACACCACCGCAA+AGG - chr7.2:28868125-28868144 MS.gene27714:CDS 60.0%
!! GAGGGTCATGTTGGTGACCG+TGG - chr7.2:28868422-28868441 MS.gene27714:intron 60.0%
CCTCCGTGGGGATGCTCAAC+AGG + chr7.2:28869421-28869440 None:intergenic 65.0%
CCTGTTGAGCATCCCCACGG+AGG - chr7.2:28869418-28869437 MS.gene27714:CDS 65.0%
CGTGCCCAACGTAAGGGAGC+AGG - chr7.2:28868089-28868108 MS.gene27714:CDS 65.0%
CGTTGCGTTCGCCGAAGTCG+AGG + chr7.2:28868169-28868188 None:intergenic 65.0%
GAGCACCACGACCTGGATCG+TGG + chr7.2:28868223-28868242 None:intergenic 65.0%
GGCCTTTGCGGTGGTGTGTG+TGG + chr7.2:28868130-28868149 None:intergenic 65.0%
GTCGAGGGAACGGAAACGGG+CGG + chr7.2:28868153-28868172 None:intergenic 65.0%
GTTGAGCATCCCCACGGAGG+AGG - chr7.2:28869421-28869440 MS.gene27714:CDS 65.0%
TCGAGGGAACGGAAACGGGC+GGG + chr7.2:28868152-28868171 None:intergenic 65.0%
!! GCAAGAGGAGCACCACGACC+TGG + chr7.2:28868230-28868249 None:intergenic 65.0%
CGAGGGAACGGAAACGGGCG+GGG + chr7.2:28868151-28868170 None:intergenic 70.0%
GGAAACGGGCGGGGCCTTTG+CGG + chr7.2:28868142-28868161 None:intergenic 70.0%
AACGGGCGGGGCCTTTGCGG+TGG + chr7.2:28868139-28868158 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 28868074 28869582 28868074 ID=MS.gene27714
chr7.2 mRNA 28868074 28869582 28868074 ID=MS.gene27714.t1;Parent=MS.gene27714
chr7.2 exon 28869143 28869582 28869143 ID=MS.gene27714.t1.exon1;Parent=MS.gene27714.t1
chr7.2 CDS 28869143 28869582 28869143 ID=cds.MS.gene27714.t1;Parent=MS.gene27714.t1
chr7.2 exon 28868074 28868413 28868074 ID=MS.gene27714.t1.exon2;Parent=MS.gene27714.t1
chr7.2 CDS 28868074 28868413 28868074 ID=cds.MS.gene27714.t1;Parent=MS.gene27714.t1
Gene Sequence

>MS.gene27714

ATGGGTCGTGTCATCCGTGCCCAACGTAAGGGAGCAGGTTCCGTTTTCAAATCCCACACACACCACCGCAAAGGCCCCGCCCGTTTCCGTTCCCTCGACTTCGGCGAACGCAACGGTTACCTCAAAGGAGTCGTCACCGACGTCATCCACGATCCAGGTCGTGGTGCTCCTCTTGCTAAGGTGACTTTCCGTCATCCCTTCCGTTATCAGAAACAGAAGGAGCTTTTCGTTGCTGCTGAGGGTTTGTATACCGGTCAGTTTATTTACTGCGGTAAAAAGGCTACCCTTGTTGTTGGTAATGTTTTGCCTCTTAGATCTATTCCTGAAGGTGCTGTGATTTGTAATGTTGAGGGTCATGTTGGTGACCGTGGTGTTTTTGCTAGAGCTTCTGGTGATTATGCTATTGTTATCAGTCACAACCCCGATAATGATACCTCTAGGTATATTTTTATTCTTTCTTTTTGTTTAATTATTTGATGTTATTTTTAATGGCGTTTGATTATATTATGATTTTGGAATTAAATTTGGTATTTGAGTGGATTTTAACTTTCAATAGAAATATTTGATCTGGGTTGTTACAGTTTCAAGATAGATTTGTTTGATTTTGTAATTCTAGTAATTTTGAAATTGATAAAATGAATTGATGTTAGTGTTTTTCGGTTATGGAGAATTATTATTTGATTATATTTTTGGATTGATTTTGGTATTTTTAGTAGATTGAATTGGAATTGAGTGGGTTGATCTGATTTGATACAAATTTGATTTGTTTAAGCTGGATTAGTTTTTAAAAACTATGTTGTAACGTTTAATTTTAAAAAAAAAATGAAATTTGTTTTGTAAATTCATGGATTTCATGATGCCAAGATGAATTTTGAACCCGATTTGTTTATATTGTGCTAGTTGTTTGATTTCAATGCAGAAAATTGGGCTACACCTTAAAATCTGATTAAAAATTTATACCTTTTTTGGATTTTAAATGATACTCCTCCAATTAGTTTTCAGAGTATTTTTCATGACTGAAGTGAAGTCATGGATATAGGAATTTCGATTAATATTAATTTAAGGAAATGATATTATCAATATAATACTTTTTTATTAGGGTTTTGTTTGATTATTTAGGTGTATACTTGATTTAGGAGAGTAATGTTGAAATGAGTTTTGTTATACAGGATCAAGCTTCCATCTGGTGCCAAGAAGATTGTGCCAAGTGACTGCAGGGCCATGATTGGGCAAGTTGCTGGTGGTGGAAGAACTGAGAAGCCAATGTTGAAGGCCGGTAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGTTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTTGAGCATCCCCACGGAGGAGGTAATCACCAACATATTGGTCATGCCAGTACTGTCAGACGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCTGCCAAGAGGACTGGTCGTCTTAGGGGTCAAGCTGCTGCAAGTGCTGCTAAAGCCGATAAATAA
Protein sequence

>MS.gene27714.t1

MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYQKQKELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEGHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAASAAKADK