Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054798.t1 | XP_003602845.1 | 78.6 | 168 | 36 | 0 | 1 | 168 | 17 | 184 | 6.70E-54 | 220.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054798.t1 | Q41001 | 74.7 | 166 | 37 | 2 | 1 | 161 | 18 | 183 | 4.7e-40 | 165.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054798.t1 | G7J401 | 78.6 | 168 | 36 | 0 | 1 | 168 | 17 | 184 | 4.8e-54 | 220.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074086 | MS.gene054798 | PPI |
| MS.gene47150 | MS.gene054798 | PPI |
| MS.gene55509 | MS.gene054798 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054798.t1 | MTR_3g099570 | 85.714 | 168 | 24 | 0 | 1 | 168 | 17 | 184 | 4.62e-93 | 268 |
| MS.gene054798.t1 | MTR_3g099580 | 70.760 | 171 | 46 | 2 | 1 | 168 | 17 | 186 | 2.56e-63 | 193 |
| MS.gene054798.t1 | MTR_3g099680 | 60.000 | 205 | 40 | 4 | 1 | 164 | 17 | 220 | 2.99e-62 | 191 |
| MS.gene054798.t1 | MTR_3g099980 | 60.591 | 203 | 40 | 4 | 1 | 164 | 17 | 218 | 3.65e-62 | 191 |
| MS.gene054798.t1 | MTR_3g099540 | 61.818 | 110 | 42 | 0 | 1 | 110 | 18 | 127 | 2.38e-42 | 138 |
| MS.gene054798.t1 | MTR_8g007020 | 42.771 | 166 | 91 | 3 | 1 | 162 | 14 | 179 | 5.06e-31 | 110 |
| MS.gene054798.t1 | MTR_8g007035 | 53.271 | 107 | 47 | 2 | 1 | 104 | 14 | 120 | 5.16e-31 | 111 |
| MS.gene054798.t1 | MTR_1g090190 | 34.375 | 160 | 105 | 0 | 7 | 166 | 20 | 179 | 3.44e-30 | 108 |
| MS.gene054798.t1 | MTR_4g114870 | 45.690 | 116 | 58 | 2 | 8 | 118 | 27 | 142 | 9.44e-27 | 103 |
| MS.gene054798.t1 | MTR_4g114870 | 45.545 | 101 | 50 | 2 | 9 | 104 | 190 | 290 | 1.94e-22 | 92.4 |
| MS.gene054798.t1 | MTR_2g088990 | 41.176 | 136 | 71 | 3 | 6 | 132 | 21 | 156 | 2.84e-25 | 97.4 |
| MS.gene054798.t1 | MTR_6g083240 | 36.709 | 158 | 90 | 4 | 5 | 155 | 22 | 176 | 1.87e-22 | 88.6 |
| MS.gene054798.t1 | MTR_8g099220 | 43.689 | 103 | 54 | 2 | 7 | 105 | 26 | 128 | 3.09e-22 | 86.7 |
| MS.gene054798.t1 | MTR_5g006040 | 39.167 | 120 | 70 | 2 | 7 | 123 | 23 | 142 | 4.08e-22 | 87.8 |
| MS.gene054798.t1 | MTR_6g080660 | 41.414 | 99 | 58 | 0 | 10 | 108 | 28 | 126 | 7.21e-21 | 85.5 |
| MS.gene054798.t1 | MTR_7g086140 | 44.554 | 101 | 54 | 2 | 6 | 104 | 22 | 122 | 3.30e-20 | 82.4 |
| MS.gene054798.t1 | MTR_7g086190 | 44.554 | 101 | 54 | 2 | 6 | 104 | 22 | 122 | 3.30e-20 | 82.4 |
| MS.gene054798.t1 | MTR_2g043730 | 43.137 | 102 | 54 | 3 | 5 | 105 | 27 | 125 | 5.63e-20 | 80.9 |
| MS.gene054798.t1 | MTR_6g023760 | 40.196 | 102 | 60 | 1 | 4 | 104 | 20 | 121 | 1.05e-19 | 81.6 |
| MS.gene054798.t1 | MTR_0334s0010 | 40.777 | 103 | 58 | 1 | 5 | 104 | 23 | 125 | 1.67e-19 | 81.6 |
| MS.gene054798.t1 | MTR_1g112700 | 34.328 | 134 | 76 | 3 | 5 | 126 | 28 | 161 | 4.04e-19 | 80.1 |
| MS.gene054798.t1 | MTR_7g086160 | 43.000 | 100 | 55 | 2 | 7 | 104 | 24 | 123 | 8.64e-19 | 79.0 |
| MS.gene054798.t1 | MTR_7g086090 | 40.196 | 102 | 60 | 1 | 6 | 106 | 22 | 123 | 8.70e-19 | 80.5 |
| MS.gene054798.t1 | MTR_1g090420 | 33.088 | 136 | 83 | 4 | 7 | 138 | 25 | 156 | 9.41e-19 | 80.1 |
| MS.gene054798.t1 | MTR_1g105130 | 41.584 | 101 | 57 | 2 | 6 | 104 | 21 | 121 | 1.31e-18 | 78.2 |
| MS.gene054798.t1 | MTR_1g105120 | 41.584 | 101 | 57 | 2 | 6 | 104 | 21 | 121 | 1.31e-18 | 78.2 |
| MS.gene054798.t1 | MTR_4g067200 | 42.017 | 119 | 62 | 4 | 1 | 112 | 19 | 137 | 1.72e-18 | 78.2 |
| MS.gene054798.t1 | MTR_4g066110 | 42.017 | 119 | 62 | 4 | 1 | 112 | 19 | 137 | 1.72e-18 | 78.2 |
| MS.gene054798.t1 | MTR_2g025580 | 35.043 | 117 | 74 | 2 | 1 | 115 | 18 | 134 | 5.90e-18 | 76.6 |
| MS.gene054798.t1 | MTR_1g104800 | 38.614 | 101 | 59 | 3 | 7 | 104 | 22 | 122 | 1.88e-17 | 75.9 |
| MS.gene054798.t1 | MTR_8g463180 | 36.667 | 120 | 72 | 3 | 5 | 121 | 19 | 137 | 2.96e-17 | 77.4 |
| MS.gene054798.t1 | MTR_7g086220 | 40.659 | 91 | 53 | 1 | 6 | 95 | 21 | 111 | 3.00e-17 | 74.7 |
| MS.gene054798.t1 | MTR_7g086100 | 37.500 | 104 | 64 | 1 | 6 | 108 | 22 | 125 | 9.68e-17 | 74.7 |
| MS.gene054798.t1 | MTR_2g043790 | 42.424 | 99 | 53 | 3 | 5 | 102 | 2 | 97 | 2.73e-16 | 70.5 |
| MS.gene054798.t1 | MTR_7g086280 | 36.538 | 104 | 65 | 1 | 6 | 108 | 22 | 125 | 3.17e-16 | 72.4 |
| MS.gene054798.t1 | MTR_4g007250 | 39.423 | 104 | 61 | 2 | 4 | 106 | 23 | 125 | 3.36e-16 | 72.4 |
| MS.gene054798.t1 | MTR_7g086230 | 36.538 | 104 | 65 | 1 | 6 | 108 | 22 | 125 | 3.38e-16 | 72.4 |
| MS.gene054798.t1 | MTR_2g101300 | 37.600 | 125 | 67 | 4 | 7 | 122 | 24 | 146 | 3.45e-16 | 72.8 |
| MS.gene054798.t1 | MTR_4g081100 | 36.697 | 109 | 64 | 2 | 1 | 104 | 23 | 131 | 2.13e-14 | 68.6 |
| MS.gene054798.t1 | MTR_3g089035 | 40.206 | 97 | 54 | 3 | 7 | 102 | 30 | 123 | 8.64e-14 | 64.7 |
| MS.gene054798.t1 | MTR_2g083250 | 37.143 | 105 | 59 | 2 | 7 | 104 | 23 | 127 | 1.14e-13 | 67.0 |
| MS.gene054798.t1 | MTR_4g114830 | 36.170 | 94 | 53 | 3 | 13 | 99 | 32 | 125 | 1.24e-13 | 65.1 |
| MS.gene054798.t1 | MTR_4g130800 | 40.741 | 81 | 47 | 1 | 25 | 104 | 49 | 129 | 4.65e-13 | 65.5 |
| MS.gene054798.t1 | MTR_4g130800 | 40.741 | 81 | 47 | 1 | 25 | 104 | 48 | 128 | 5.63e-13 | 65.1 |
| MS.gene054798.t1 | MTR_4g077787 | 28.676 | 136 | 87 | 4 | 12 | 139 | 34 | 167 | 6.00e-13 | 63.9 |
| MS.gene054798.t1 | MTR_6g022170 | 35.922 | 103 | 60 | 2 | 7 | 104 | 31 | 132 | 7.09e-13 | 63.2 |
| MS.gene054798.t1 | MTR_6g013420 | 31.902 | 163 | 89 | 6 | 7 | 166 | 35 | 178 | 1.11e-12 | 63.2 |
| MS.gene054798.t1 | MTR_2g090580 | 31.944 | 144 | 83 | 4 | 12 | 142 | 29 | 170 | 2.00e-12 | 62.8 |
| MS.gene054798.t1 | MTR_4g130780 | 36.145 | 83 | 52 | 1 | 24 | 105 | 48 | 130 | 2.87e-12 | 62.0 |
| MS.gene054798.t1 | MTR_4g111640 | 29.104 | 134 | 87 | 4 | 12 | 138 | 34 | 166 | 6.81e-12 | 60.8 |
| MS.gene054798.t1 | MTR_2g090575 | 36.458 | 96 | 58 | 2 | 12 | 104 | 27 | 122 | 8.44e-12 | 62.4 |
| MS.gene054798.t1 | MTR_4g112310 | 29.310 | 116 | 80 | 2 | 24 | 138 | 2 | 116 | 1.67e-11 | 58.9 |
| MS.gene054798.t1 | MTR_8g088830 | 36.735 | 98 | 57 | 4 | 7 | 102 | 25 | 119 | 1.76e-11 | 58.5 |
| MS.gene054798.t1 | MTR_3g089005 | 35.922 | 103 | 62 | 3 | 1 | 102 | 24 | 123 | 2.85e-11 | 58.2 |
| MS.gene054798.t1 | MTR_8g089110 | 36.082 | 97 | 58 | 3 | 7 | 102 | 25 | 118 | 3.03e-11 | 58.2 |
| MS.gene054798.t1 | MTR_4g124280 | 33.010 | 103 | 64 | 2 | 7 | 104 | 22 | 124 | 3.16e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054798.t1 | AT1G72230 | 48.966 | 145 | 63 | 2 | 18 | 157 | 31 | 169 | 9.66e-39 | 130 |
| MS.gene054798.t1 | AT1G22480 | 58.511 | 94 | 39 | 0 | 16 | 109 | 25 | 118 | 1.63e-30 | 109 |
| MS.gene054798.t1 | AT2G32300 | 43.966 | 116 | 64 | 1 | 5 | 119 | 21 | 136 | 2.24e-26 | 100 |
| MS.gene054798.t1 | AT2G32300 | 43.966 | 116 | 64 | 1 | 5 | 119 | 51 | 166 | 5.03e-26 | 100 |
| MS.gene054798.t1 | AT2G31050 | 35.849 | 159 | 85 | 3 | 7 | 148 | 26 | 184 | 6.73e-25 | 95.5 |
| MS.gene054798.t1 | AT5G07475 | 39.161 | 143 | 76 | 3 | 7 | 145 | 27 | 162 | 1.06e-24 | 95.1 |
| MS.gene054798.t1 | AT3G60270 | 46.000 | 100 | 54 | 0 | 5 | 104 | 21 | 120 | 1.33e-24 | 94.7 |
| MS.gene054798.t1 | AT2G26720 | 42.478 | 113 | 63 | 2 | 7 | 117 | 26 | 138 | 4.26e-24 | 93.6 |
| MS.gene054798.t1 | AT3G27200 | 41.000 | 100 | 58 | 1 | 6 | 104 | 22 | 121 | 1.12e-22 | 89.4 |
| MS.gene054798.t1 | AT2G44790 | 48.421 | 95 | 47 | 1 | 18 | 110 | 36 | 130 | 1.14e-21 | 87.4 |
| MS.gene054798.t1 | AT3G17675 | 39.252 | 107 | 64 | 1 | 1 | 106 | 23 | 129 | 2.46e-21 | 84.3 |
| MS.gene054798.t1 | AT5G20230 | 36.585 | 164 | 85 | 5 | 10 | 154 | 25 | 188 | 2.38e-18 | 78.6 |
| MS.gene054798.t1 | AT5G26330 | 38.614 | 101 | 59 | 2 | 7 | 104 | 21 | 121 | 3.38e-16 | 72.8 |
| MS.gene054798.t1 | AT5G53870 | 30.612 | 147 | 94 | 3 | 12 | 150 | 32 | 178 | 1.77e-14 | 70.1 |
| MS.gene054798.t1 | AT3G60280 | 39.316 | 117 | 71 | 0 | 6 | 122 | 20 | 136 | 1.99e-14 | 68.6 |
| MS.gene054798.t1 | AT5G53870 | 30.612 | 147 | 94 | 3 | 12 | 150 | 32 | 178 | 2.23e-14 | 70.1 |
| MS.gene054798.t1 | AT2G25060 | 35.849 | 106 | 62 | 3 | 18 | 117 | 40 | 145 | 1.30e-12 | 63.2 |
| MS.gene054798.t1 | AT4G28365 | 31.707 | 123 | 73 | 3 | 12 | 123 | 31 | 153 | 1.22e-11 | 60.8 |
| MS.gene054798.t1 | AT1G45063 | 35.455 | 110 | 63 | 3 | 12 | 115 | 151 | 258 | 2.93e-11 | 60.5 |
| MS.gene054798.t1 | AT1G45063 | 35.455 | 110 | 63 | 3 | 12 | 115 | 151 | 258 | 3.48e-11 | 60.8 |
| MS.gene054798.t1 | AT5G15350 | 33.036 | 112 | 71 | 3 | 7 | 115 | 26 | 136 | 4.00e-11 | 58.9 |
| MS.gene054798.t1 | AT3G18590 | 34.615 | 104 | 61 | 2 | 7 | 104 | 24 | 126 | 4.13e-11 | 58.9 |
| MS.gene054798.t1 | AT1G79800 | 33.333 | 117 | 64 | 3 | 12 | 115 | 36 | 151 | 9.23e-11 | 58.2 |
Find 44 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTATGGCATTGCCGACTA+TGG | 0.299229 | 3.3:-81972446 | None:intergenic |
| ATTCCTAGACATTGCACATT+TGG | 0.319782 | 3.3:-81972072 | MS.gene054798:CDS |
| CACATTGTTGGAGATGGTTT+AGG | 0.350314 | 3.3:-81972415 | MS.gene054798:CDS |
| TGGCATGAAACTCTCTGTTA+AGG | 0.390798 | 3.3:-81972052 | MS.gene054798:CDS |
| GATCTCTATCCGTCATATAT+TGG | 0.416236 | 3.3:-81971860 | MS.gene054798:CDS |
| GATGGTTTAGGTTGGACAAT+TGG | 0.425937 | 3.3:-81972403 | MS.gene054798:CDS |
| CTAGCCCATGTAGTGTAATC+AGG | 0.453147 | 3.3:+81972379 | None:intergenic |
| ACAGTGTTCAACTATGTAGC+TGG | 0.464587 | 3.3:-81972225 | MS.gene054798:intron |
| TATATGACGGATAGAGATCC+AGG | 0.466675 | 3.3:+81971864 | None:intergenic |
| TTCCAGCTGTGCATAATGTA+TGG | 0.484126 | 3.3:+81972172 | None:intergenic |
| ATGGCAACAACCCACATTGT+TGG | 0.499388 | 3.3:-81972427 | MS.gene054798:CDS |
| ATGCCAAATGTGCAATGTCT+AGG | 0.500016 | 3.3:+81972069 | None:intergenic |
| GACCATACATTATGCACAGC+TGG | 0.503333 | 3.3:-81972174 | MS.gene054798:CDS |
| TTGGTCCTGATTACACTACA+TGG | 0.504799 | 3.3:-81972384 | MS.gene054798:CDS |
| ATCGGAAGGTGAACCTTTCG+TGG | 0.505016 | 3.3:+81971987 | None:intergenic |
| GCAGAAGGAGCGGCAGAAGA+AGG | 0.505108 | 3.3:+81972024 | None:intergenic |
| GGTGGTGGTTGTTGCGGCAG+CGG | 0.517819 | 3.3:+81971960 | None:intergenic |
| AACAATTGGTGAGATATTAG+TGG | 0.520976 | 3.3:+81971906 | None:intergenic |
| TGTTGCGGCAGCGGTGCGAT+CGG | 0.526820 | 3.3:+81971969 | None:intergenic |
| GCGGCAGCGGTGCGATCGGA+AGG | 0.527471 | 3.3:+81971973 | None:intergenic |
| ACAACCCACATTGTTGGAGA+TGG | 0.532220 | 3.3:-81972421 | MS.gene054798:CDS |
| GAAGGTGAACCTTTCGTGGA+TGG | 0.547718 | 3.3:+81971991 | None:intergenic |
| TTTGCAGTTGGTGACAGTCT+CGG | 0.554211 | 3.3:-81972346 | MS.gene054798:intron |
| TGTGGTAGGAGTAGTGGTGG+TGG | 0.559960 | 3.3:+81971945 | None:intergenic |
| ATGTGGGTTGTTGCCATAGT+CGG | 0.565131 | 3.3:+81972433 | None:intergenic |
| GAAGATGCACTTTGTGTGGT+AGG | 0.585213 | 3.3:+81971931 | None:intergenic |
| TTGTTGGAGATGGTTTAGGT+TGG | 0.586690 | 3.3:-81972411 | MS.gene054798:CDS |
| AGTGACAAAACCTTTGCAGT+TGG | 0.590211 | 3.3:-81972358 | MS.gene054798:CDS |
| GAACCTTTCGTGGATGGTGA+TGG | 0.595492 | 3.3:+81971997 | None:intergenic |
| AGTAGTGGTGGTGGTTGTTG+CGG | 0.603984 | 3.3:+81971954 | None:intergenic |
| CAGTGTTCAACTATGTAGCT+GGG | 0.604419 | 3.3:-81972224 | MS.gene054798:CDS |
| GATGGTGATGGTGTTGCAGA+AGG | 0.618024 | 3.3:+81972009 | None:intergenic |
| ACTTTGTGTGGTAGGAGTAG+TGG | 0.618884 | 3.3:+81971939 | None:intergenic |
| GAGACTGTCACCAACTGCAA+AGG | 0.629029 | 3.3:+81972348 | None:intergenic |
| TGGTCCTGATTACACTACAT+GGG | 0.630389 | 3.3:-81972383 | MS.gene054798:CDS |
| TAAACCATCTCCAACAATGT+GGG | 0.636144 | 3.3:+81972417 | None:intergenic |
| ACACCATCACCATCCACGAA+AGG | 0.636152 | 3.3:-81972000 | MS.gene054798:CDS |
| GGCTGAAGATGCACTTTGTG+TGG | 0.645311 | 3.3:+81971927 | None:intergenic |
| TATCTCACACCAATATATGA+CGG | 0.646155 | 3.3:+81971851 | None:intergenic |
| TTGTGTGGTAGGAGTAGTGG+TGG | 0.649594 | 3.3:+81971942 | None:intergenic |
| TCAATTAATACAGACAGCAG+TGG | 0.671855 | 3.3:-81972147 | MS.gene054798:CDS |
| CTAAACCATCTCCAACAATG+TGG | 0.675206 | 3.3:+81972416 | None:intergenic |
| TGATGGTGTTGCAGAAGGAG+CGG | 0.712627 | 3.3:+81972014 | None:intergenic |
| CTATGTAGCTGGGCACACAG+TGG | 0.727318 | 3.3:-81972214 | MS.gene054798:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AACAATTGGTGAGATATTAG+TGG | + | chr3.3:81972394-81972413 | None:intergenic | 30.0% | |
| GTGAAAAAGAAAGCAACAAT+TGG | + | chr3.3:81972408-81972427 | None:intergenic | 30.0% | |
| !!! | AATGTGTTCCTGCTTTTTTT+AGG | + | chr3.3:81972191-81972210 | None:intergenic | 30.0% |
| !!! | ATGTGTTCCTGCTTTTTTTA+GGG | + | chr3.3:81972190-81972209 | None:intergenic | 30.0% |
| ATTCCTAGACATTGCACATT+TGG | - | chr3.3:81972225-81972244 | MS.gene054798:intron | 35.0% | |
| GATCTCTATCCGTCATATAT+TGG | - | chr3.3:81972437-81972456 | MS.gene054798:CDS | 35.0% | |
| TAAACCATCTCCAACAATGT+GGG | + | chr3.3:81971883-81971902 | None:intergenic | 35.0% | |
| TCAATTAATACAGACAGCAG+TGG | - | chr3.3:81972150-81972169 | MS.gene054798:CDS | 35.0% | |
| !!! | TGTGTTCCTGCTTTTTTTAG+GGG | + | chr3.3:81972189-81972208 | None:intergenic | 35.0% |
| !!! | TTTTTTTAGGGGAATGGTTG+TGG | + | chr3.3:81972178-81972197 | None:intergenic | 35.0% |
| ACAGTGTTCAACTATGTAGC+TGG | - | chr3.3:81972072-81972091 | MS.gene054798:CDS | 40.0% | |
| ACCATTCCCCTAAAAAAAGC+AGG | - | chr3.3:81972180-81972199 | MS.gene054798:CDS | 40.0% | |
| AGTGACAAAACCTTTGCAGT+TGG | - | chr3.3:81971939-81971958 | MS.gene054798:CDS | 40.0% | |
| ATGCCAAATGTGCAATGTCT+AGG | + | chr3.3:81972231-81972250 | None:intergenic | 40.0% | |
| CACATTGTTGGAGATGGTTT+AGG | - | chr3.3:81971882-81971901 | MS.gene054798:CDS | 40.0% | |
| CAGTGTTCAACTATGTAGCT+GGG | - | chr3.3:81972073-81972092 | MS.gene054798:CDS | 40.0% | |
| CTAAACCATCTCCAACAATG+TGG | + | chr3.3:81971884-81971903 | None:intergenic | 40.0% | |
| TGGCATGAAACTCTCTGTTA+AGG | - | chr3.3:81972245-81972264 | MS.gene054798:intron | 40.0% | |
| TGGTCCTGATTACACTACAT+GGG | - | chr3.3:81971914-81971933 | MS.gene054798:CDS | 40.0% | |
| TTCCAGCTGTGCATAATGTA+TGG | + | chr3.3:81972128-81972147 | None:intergenic | 40.0% | |
| TTGGTCCTGATTACACTACA+TGG | - | chr3.3:81971913-81971932 | MS.gene054798:CDS | 40.0% | |
| TTGTTGGAGATGGTTTAGGT+TGG | - | chr3.3:81971886-81971905 | MS.gene054798:CDS | 40.0% | |
| !! | CTTTCTTTTTCACTGCTTCC+TGG | - | chr3.3:81972415-81972434 | MS.gene054798:CDS | 40.0% |
| !! | GATGGTTTAGGTTGGACAAT+TGG | - | chr3.3:81971894-81971913 | MS.gene054798:CDS | 40.0% |
| !! | TATATGACGGATAGAGATCC+AGG | + | chr3.3:81972436-81972455 | None:intergenic | 40.0% |
| !!! | TCCTGCTTTTTTTAGGGGAA+TGG | + | chr3.3:81972184-81972203 | None:intergenic | 40.0% |
| ACAACCCACATTGTTGGAGA+TGG | - | chr3.3:81971876-81971895 | MS.gene054798:CDS | 45.0% | |
| ACTTTGTGTGGTAGGAGTAG+TGG | + | chr3.3:81972361-81972380 | None:intergenic | 45.0% | |
| ATGGCAACAACCCACATTGT+TGG | - | chr3.3:81971870-81971889 | MS.gene054798:CDS | 45.0% | |
| CTAGCCCATGTAGTGTAATC+AGG | + | chr3.3:81971921-81971940 | None:intergenic | 45.0% | |
| GAAGATGCACTTTGTGTGGT+AGG | + | chr3.3:81972369-81972388 | None:intergenic | 45.0% | |
| GACCATACATTATGCACAGC+TGG | - | chr3.3:81972123-81972142 | MS.gene054798:CDS | 45.0% | |
| ! | ATGTGGGTTGTTGCCATAGT+CGG | + | chr3.3:81971867-81971886 | None:intergenic | 45.0% |
| !! | TTTGCAGTTGGTGACAGTCT+CGG | - | chr3.3:81971951-81971970 | MS.gene054798:CDS | 45.0% |
| ACACCATCACCATCCACGAA+AGG | - | chr3.3:81972297-81972316 | MS.gene054798:intron | 50.0% | |
| ATCGGAAGGTGAACCTTTCG+TGG | + | chr3.3:81972313-81972332 | None:intergenic | 50.0% | |
| GAACCTTTCGTGGATGGTGA+TGG | + | chr3.3:81972303-81972322 | None:intergenic | 50.0% | |
| GAAGGTGAACCTTTCGTGGA+TGG | + | chr3.3:81972309-81972328 | None:intergenic | 50.0% | |
| GAGACTGTCACCAACTGCAA+AGG | + | chr3.3:81971952-81971971 | None:intergenic | 50.0% | |
| GGCTGAAGATGCACTTTGTG+TGG | + | chr3.3:81972373-81972392 | None:intergenic | 50.0% | |
| TTGTGTGGTAGGAGTAGTGG+TGG | + | chr3.3:81972358-81972377 | None:intergenic | 50.0% | |
| !! | AGTAGTGGTGGTGGTTGTTG+CGG | + | chr3.3:81972346-81972365 | None:intergenic | 50.0% |
| !! | GATGGTGATGGTGTTGCAGA+AGG | + | chr3.3:81972291-81972310 | None:intergenic | 50.0% |
| !! | TGATGGTGTTGCAGAAGGAG+CGG | + | chr3.3:81972286-81972305 | None:intergenic | 50.0% |
| CTATGTAGCTGGGCACACAG+TGG | - | chr3.3:81972083-81972102 | MS.gene054798:CDS | 55.0% | |
| TGTGGTAGGAGTAGTGGTGG+TGG | + | chr3.3:81972355-81972374 | None:intergenic | 55.0% | |
| GCAGAAGGAGCGGCAGAAGA+AGG | + | chr3.3:81972276-81972295 | None:intergenic | 60.0% | |
| TGTTGCGGCAGCGGTGCGAT+CGG | + | chr3.3:81972331-81972350 | None:intergenic | 65.0% | |
| ! | GGTGGTGGTTGTTGCGGCAG+CGG | + | chr3.3:81972340-81972359 | None:intergenic | 65.0% |
| GCGGCAGCGGTGCGATCGGA+AGG | + | chr3.3:81972327-81972346 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 81971855 | 81972464 | 81971855 | ID=MS.gene054798 |
| chr3.3 | mRNA | 81971855 | 81972464 | 81971855 | ID=MS.gene054798.t1;Parent=MS.gene054798 |
| chr3.3 | exon | 81972347 | 81972464 | 81972347 | ID=MS.gene054798.t1.exon1;Parent=MS.gene054798.t1 |
| chr3.3 | CDS | 81972347 | 81972464 | 81972347 | ID=cds.MS.gene054798.t1;Parent=MS.gene054798.t1 |
| chr3.3 | exon | 81971855 | 81972243 | 81971855 | ID=MS.gene054798.t1.exon2;Parent=MS.gene054798.t1 |
| chr3.3 | CDS | 81971855 | 81972243 | 81971855 | ID=cds.MS.gene054798.t1;Parent=MS.gene054798.t1 |
| Gene Sequence |
| Protein sequence |
