Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055309.t1 | XP_003602698.2 | 85.9 | 523 | 28 | 6 | 1 | 480 | 387 | 906 | 1.90E-242 | 848.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055309.t1 | O36033 | 22.0 | 533 | 325 | 14 | 7 | 470 | 307 | 817 | 2.8e-21 | 104.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055309.t1 | G7J2N4 | 85.9 | 523 | 28 | 6 | 1 | 480 | 387 | 906 | 1.3e-242 | 848.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055309 | MS.gene06323 | 0.829738 | 4.35E-55 | -1.69E-46 |
| MS.gene055309 | MS.gene072478 | 0.807702 | 4.44E-50 | -1.69E-46 |
| MS.gene055309 | MS.gene22270 | 0.822053 | 2.91E-53 | -1.69E-46 |
| MS.gene055309 | MS.gene28944 | 0.814862 | 1.24E-51 | -1.69E-46 |
| MS.gene055309 | MS.gene41606 | 0.871357 | 7.27E-67 | -1.69E-46 |
| MS.gene055309 | MS.gene50986 | 0.826924 | 2.08E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055309.t1 | MTR_3g098060 | 86.042 | 523 | 27 | 7 | 1 | 480 | 228 | 747 | 0.0 | 887 |
| MS.gene055309.t1 | MTR_3g098060 | 86.042 | 523 | 27 | 7 | 1 | 480 | 387 | 906 | 0.0 | 887 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055309.t1 | AT5G17270 | 60.665 | 511 | 162 | 9 | 1 | 476 | 384 | 890 | 0.0 | 588 |
| MS.gene055309.t1 | AT5G17270 | 60.665 | 511 | 162 | 9 | 1 | 476 | 146 | 652 | 0.0 | 588 |
| MS.gene055309.t1 | AT5G37130 | 56.566 | 495 | 183 | 9 | 1 | 470 | 376 | 863 | 0.0 | 541 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24165 | gene | 31 | 8417 | 31 | ID=MS.gene055309 |
| 24165 | mRNA | 31 | 8417 | 31 | ID=MS.gene055309.t1;Parent=MS.gene055309 |
| 24165 | exon | 31 | 109 | 31 | ID=MS.gene055309.t1.exon1;Parent=MS.gene055309.t1 |
| 24165 | CDS | 31 | 109 | 31 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 1472 | 1529 | 1472 | ID=MS.gene055309.t1.exon2;Parent=MS.gene055309.t1 |
| 24165 | CDS | 1472 | 1529 | 1472 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 1693 | 1774 | 1693 | ID=MS.gene055309.t1.exon3;Parent=MS.gene055309.t1 |
| 24165 | CDS | 1693 | 1774 | 1693 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 2285 | 2376 | 2285 | ID=MS.gene055309.t1.exon4;Parent=MS.gene055309.t1 |
| 24165 | CDS | 2285 | 2376 | 2285 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 2472 | 2576 | 2472 | ID=MS.gene055309.t1.exon5;Parent=MS.gene055309.t1 |
| 24165 | CDS | 2472 | 2576 | 2472 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 2657 | 2734 | 2657 | ID=MS.gene055309.t1.exon6;Parent=MS.gene055309.t1 |
| 24165 | CDS | 2657 | 2734 | 2657 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 4186 | 4272 | 4186 | ID=MS.gene055309.t1.exon7;Parent=MS.gene055309.t1 |
| 24165 | CDS | 4186 | 4272 | 4186 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 4762 | 4821 | 4762 | ID=MS.gene055309.t1.exon8;Parent=MS.gene055309.t1 |
| 24165 | CDS | 4762 | 4821 | 4762 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 4964 | 5033 | 4964 | ID=MS.gene055309.t1.exon9;Parent=MS.gene055309.t1 |
| 24165 | CDS | 4964 | 5033 | 4964 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 5520 | 5587 | 5520 | ID=MS.gene055309.t1.exon10;Parent=MS.gene055309.t1 |
| 24165 | CDS | 5520 | 5587 | 5520 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 6128 | 6190 | 6128 | ID=MS.gene055309.t1.exon11;Parent=MS.gene055309.t1 |
| 24165 | CDS | 6128 | 6190 | 6128 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 6389 | 6422 | 6389 | ID=MS.gene055309.t1.exon12;Parent=MS.gene055309.t1 |
| 24165 | CDS | 6389 | 6422 | 6389 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 7051 | 7262 | 7051 | ID=MS.gene055309.t1.exon13;Parent=MS.gene055309.t1 |
| 24165 | CDS | 7051 | 7262 | 7051 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 7542 | 7647 | 7542 | ID=MS.gene055309.t1.exon14;Parent=MS.gene055309.t1 |
| 24165 | CDS | 7542 | 7647 | 7542 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 8076 | 8228 | 8076 | ID=MS.gene055309.t1.exon15;Parent=MS.gene055309.t1 |
| 24165 | CDS | 8076 | 8228 | 8076 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| 24165 | exon | 8322 | 8417 | 8322 | ID=MS.gene055309.t1.exon16;Parent=MS.gene055309.t1 |
| 24165 | CDS | 8322 | 8417 | 8322 | ID=cds.MS.gene055309.t1;Parent=MS.gene055309.t1 |
| Gene Sequence |
| Protein sequence |
