Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28944.t1 | XP_024638805.1 | 100 | 71 | 0 | 0 | 1 | 71 | 1 | 71 | 2.50E-34 | 154.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28944.t1 | Q9SYA6 | 89.9 | 69 | 7 | 0 | 1 | 69 | 1 | 69 | 5.2e-33 | 141.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28944.t1 | I3SU78 | 100.0 | 71 | 0 | 0 | 1 | 71 | 1 | 71 | 1.8e-34 | 154.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene28944 | 0.834166 | 3.51E-56 | -1.69E-46 |
| MS.gene049255 | MS.gene28944 | 0.843345 | 1.48E-58 | -1.69E-46 |
| MS.gene049343 | MS.gene28944 | 0.825253 | 5.18E-54 | -1.69E-46 |
| MS.gene049825 | MS.gene28944 | 0.838815 | 2.30E-57 | -1.69E-46 |
| MS.gene049850 | MS.gene28944 | 0.808946 | 2.41E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene28944 | 0.847813 | 9.12E-60 | -1.69E-46 |
| MS.gene050277 | MS.gene28944 | 0.822147 | 2.77E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene28944 | 0.871731 | 5.47E-67 | -1.69E-46 |
| MS.gene050355 | MS.gene28944 | 0.821591 | 3.72E-53 | -1.69E-46 |
| MS.gene05045 | MS.gene28944 | 0.802695 | 4.96E-49 | -1.69E-46 |
| MS.gene050605 | MS.gene28944 | 0.805254 | 1.46E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene28944 | 0.802843 | 4.63E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene28944 | 0.801395 | 9.19E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene28944 | 0.805011 | 1.64E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene28944 | 0.805514 | 1.29E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene28944 | 0.812004 | 5.27E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene28944 | 0.825176 | 5.41E-54 | -1.69E-46 |
| MS.gene050905 | MS.gene28944 | -0.806656 | 7.40E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene28944 | 0.822812 | 1.94E-53 | -1.69E-46 |
| MS.gene051243 | MS.gene28944 | 0.822006 | 2.98E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene28944 | 0.820538 | 6.51E-53 | -1.69E-46 |
| MS.gene051328 | MS.gene28944 | 0.825017 | 5.89E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene28944 | 0.860691 | 1.73E-63 | -1.69E-46 |
| MS.gene051363 | MS.gene28944 | 0.81244 | 4.23E-51 | -1.69E-46 |
| MS.gene051451 | MS.gene28944 | 0.802128 | 6.50E-49 | -1.69E-46 |
| MS.gene051452 | MS.gene28944 | 0.81518 | 1.05E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene28944 | 0.801484 | 8.81E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene28944 | 0.820198 | 7.78E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene28944 | 0.842358 | 2.72E-58 | -1.69E-46 |
| MS.gene051975 | MS.gene28944 | 0.849984 | 2.28E-60 | -1.69E-46 |
| MS.gene052012 | MS.gene28944 | 0.835913 | 1.27E-56 | -1.69E-46 |
| MS.gene052208 | MS.gene28944 | 0.800273 | 1.56E-48 | -1.69E-46 |
| MS.gene052286 | MS.gene28944 | 0.833943 | 3.99E-56 | -1.69E-46 |
| MS.gene052519 | MS.gene28944 | 0.837719 | 4.40E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene28944 | 0.800645 | 1.31E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene28944 | 0.815904 | 7.28E-52 | -1.69E-46 |
| MS.gene053006 | MS.gene28944 | 0.823176 | 1.59E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene28944 | 0.85338 | 2.48E-61 | -1.69E-46 |
| MS.gene053080 | MS.gene28944 | 0.829552 | 4.83E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene28944 | 0.872433 | 3.19E-67 | -1.69E-46 |
| MS.gene053931 | MS.gene28944 | 0.812911 | 3.34E-51 | -1.69E-46 |
| MS.gene053995 | MS.gene28944 | 0.811688 | 6.18E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene28944 | 0.810764 | 9.80E-51 | -1.69E-46 |
| MS.gene054657 | MS.gene28944 | 0.815757 | 7.85E-52 | -1.69E-46 |
| MS.gene054658 | MS.gene28944 | 0.810688 | 1.02E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene28944 | 0.809399 | 1.93E-50 | -1.69E-46 |
| MS.gene054994 | MS.gene28944 | 0.81356 | 2.41E-51 | -1.69E-46 |
| MS.gene055162 | MS.gene28944 | 0.813071 | 3.08E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene28944 | 0.838979 | 2.08E-57 | -1.69E-46 |
| MS.gene055222 | MS.gene28944 | 0.806325 | 8.69E-50 | -1.69E-46 |
| MS.gene055309 | MS.gene28944 | 0.814862 | 1.24E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene28944 | 0.83859 | 2.63E-57 | -1.69E-46 |
| MS.gene055623 | MS.gene28944 | 0.838478 | 2.81E-57 | -1.69E-46 |
| MS.gene055778 | MS.gene28944 | 0.807839 | 4.15E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene28944 | 0.823659 | 1.23E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene28944 | 0.83156 | 1.56E-55 | -1.69E-46 |
| MS.gene056091 | MS.gene28944 | 0.815065 | 1.12E-51 | -1.69E-46 |
| MS.gene056215 | MS.gene28944 | 0.818748 | 1.67E-52 | -1.69E-46 |
| MS.gene056595 | MS.gene28944 | 0.815249 | 1.02E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene28944 | 0.866807 | 2.18E-65 | -1.69E-46 |
| MS.gene056986 | MS.gene28944 | 0.841332 | 5.07E-58 | -1.69E-46 |
| MS.gene057060 | MS.gene28944 | 0.817196 | 3.74E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene28944 | 0.843506 | 1.34E-58 | -1.69E-46 |
| MS.gene057208 | MS.gene28944 | 0.826191 | 3.11E-54 | -1.69E-46 |
| MS.gene057693 | MS.gene28944 | 0.866765 | 2.24E-65 | -1.69E-46 |
| MS.gene057705 | MS.gene28944 | 0.823559 | 1.30E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene28944 | 0.814142 | 1.79E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene28944 | 0.814255 | 1.69E-51 | -1.69E-46 |
| MS.gene058084 | MS.gene28944 | 0.815922 | 7.21E-52 | -1.69E-46 |
| MS.gene058498 | MS.gene28944 | 0.802119 | 6.53E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene28944 | 0.826898 | 2.11E-54 | -1.69E-46 |
| MS.gene058549 | MS.gene28944 | 0.843397 | 1.44E-58 | -1.69E-46 |
| MS.gene058625 | MS.gene28944 | 0.817059 | 4.01E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene28944 | 0.823078 | 1.68E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene28944 | 0.815158 | 1.07E-51 | -1.69E-46 |
| MS.gene058908 | MS.gene28944 | 0.804026 | 2.63E-49 | -1.69E-46 |
| MS.gene058911 | MS.gene28944 | 0.802976 | 4.34E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene28944 | 0.804549 | 2.05E-49 | -1.69E-46 |
| MS.gene059151 | MS.gene28944 | 0.851278 | 9.85E-61 | -1.69E-46 |
| MS.gene059249 | MS.gene28944 | 0.814959 | 1.18E-51 | -1.69E-46 |
| MS.gene059317 | MS.gene28944 | 0.823755 | 1.17E-53 | -1.69E-46 |
| MS.gene05954 | MS.gene28944 | 0.840029 | 1.11E-57 | -1.69E-46 |
| MS.gene05978 | MS.gene28944 | 0.804946 | 1.69E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene28944 | 0.841334 | 5.06E-58 | -1.69E-46 |
| MS.gene059830 | MS.gene28944 | 0.849145 | 3.90E-60 | -1.69E-46 |
| MS.gene059842 | MS.gene28944 | 0.851219 | 1.02E-60 | -1.69E-46 |
| MS.gene059935 | MS.gene28944 | 0.826177 | 3.13E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene28944 | 0.813223 | 2.85E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene28944 | 0.807049 | 6.11E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene28944 | 0.808654 | 2.79E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene28944 | 0.808911 | 2.45E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene28944 | 0.878332 | 3.06E-69 | -1.69E-46 |
| MS.gene060572 | MS.gene28944 | 0.809228 | 2.10E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene28944 | 0.842624 | 2.31E-58 | -1.69E-46 |
| MS.gene060803 | MS.gene28944 | 0.846117 | 2.66E-59 | -1.69E-46 |
| MS.gene060830 | MS.gene28944 | 0.819265 | 1.27E-52 | -1.69E-46 |
| MS.gene060907 | MS.gene28944 | 0.819201 | 1.32E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene28944 | 0.806118 | 9.61E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28944 | MS.gene05688 | PPI |
| MS.gene28944 | MS.gene27287 | PPI |
| MS.gene26777 | MS.gene28944 | PPI |
| MS.gene28944 | MS.gene064140 | PPI |
| MS.gene28944 | MS.gene030166 | PPI |
| MS.gene28944 | MS.gene68633 | PPI |
| MS.gene28944 | MS.gene27025 | PPI |
| MS.gene070299 | MS.gene28944 | PPI |
| MS.gene28944 | MS.gene90747 | PPI |
| MS.gene28944 | MS.gene04335 | PPI |
| MS.gene28944 | MS.gene24205 | PPI |
| MS.gene28944 | MS.gene04160 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28944.t1 | MTR_5g034050 | 97.183 | 71 | 2 | 0 | 1 | 71 | 1 | 71 | 4.40e-48 | 146 |
| MS.gene28944.t1 | MTR_4g075600 | 100.000 | 64 | 0 | 0 | 1 | 64 | 1 | 64 | 5.07e-44 | 138 |
| MS.gene28944.t1 | MTR_5g034040 | 78.873 | 71 | 15 | 0 | 1 | 71 | 53 | 123 | 1.72e-39 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28944.t1 | AT1G61700 | 87.324 | 71 | 9 | 0 | 1 | 71 | 1 | 71 | 2.64e-44 | 137 |
| MS.gene28944.t1 | AT1G11475 | 88.732 | 71 | 8 | 0 | 1 | 71 | 1 | 71 | 9.45e-44 | 135 |
Find 21 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAAATGGGACTCTTATC+TGG | 0.263347 | 4.4:+34627009 | MS.gene28944:CDS |
| GTCTGGTTCGGTATTGTTGC+AGG | 0.287322 | 4.4:+34628523 | MS.gene28944:CDS |
| CACTGACCCTTCAGTGTAAT+CGG | 0.370692 | 4.4:-34627044 | None:intergenic |
| GGTAATCAGTAGTTCCTAAC+TGG | 0.371023 | 4.4:-34628698 | None:intergenic |
| ATTAGGTCATTGGAAACAAA+TGG | 0.395280 | 4.4:+34626996 | MS.gene28944:intron |
| GGAGAAGGCTGAAGCCAGTT+AGG | 0.431342 | 4.4:+34628684 | MS.gene28944:CDS |
| TGCACTGGATGCGTTGGGTC+TGG | 0.462184 | 4.4:+34628506 | MS.gene28944:CDS |
| TGGATGCGTTGGGTCTGGTT+CGG | 0.497757 | 4.4:+34628511 | MS.gene28944:CDS |
| CCCGTTCGTTGTTTCACTTG+TGG | 0.498971 | 4.4:+34626836 | MS.gene28944:CDS |
| TATGGATTGCAGAGATGCAC+TGG | 0.517566 | 4.4:+34628491 | MS.gene28944:intron |
| CTTCAAGCCGATTACACTGA+AGG | 0.518538 | 4.4:+34627037 | MS.gene28944:CDS |
| CCACAAGTGAAACAACGAAC+GGG | 0.522867 | 4.4:-34626836 | None:intergenic |
| CAGAGATGCACTGGATGCGT+TGG | 0.526584 | 4.4:+34628500 | MS.gene28944:intron |
| TCGTTGTTTCACTTGTGGAA+AGG | 0.534289 | 4.4:+34626841 | MS.gene28944:CDS |
| TTAGGTCATTGGAAACAAAT+GGG | 0.545252 | 4.4:+34626997 | MS.gene28944:intron |
| TTCAAGCCGATTACACTGAA+GGG | 0.552047 | 4.4:+34627038 | MS.gene28944:CDS |
| AGAGATGCACTGGATGCGTT+GGG | 0.559881 | 4.4:+34628501 | MS.gene28944:intron |
| TTTGCTTGCAGCTATGGAGA+AGG | 0.578496 | 4.4:+34628669 | MS.gene28944:intron |
| TCCACAAGTGAAACAACGAA+CGG | 0.616533 | 4.4:-34626837 | None:intergenic |
| GTTTCTCAATGAGATCAACA+TGG | 0.660440 | 4.4:-34628560 | None:intergenic |
| TTTCTCAATGAGATCAACAT+GGG | 0.669562 | 4.4:-34628559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAGATATAGTATATTTA+AGG | - | chr4.4:34628405-34628424 | None:intergenic | 15.0% |
| !! | AAGAGATATAGTATATTTAA+GGG | - | chr4.4:34628404-34628423 | None:intergenic | 15.0% |
| !! | AATTAAAAACTACAATTTAC+AGG | - | chr4.4:34627381-34627400 | None:intergenic | 15.0% |
| !!! | AAATTTTTCTTAAAACCTTA+GGG | + | chr4.4:34627248-34627267 | MS.gene28944:intron | 15.0% |
| !!! | CAATAGTTTATTTTTTGAAA+CGG | - | chr4.4:34628182-34628201 | None:intergenic | 15.0% |
| !!! | TTACACAAAGTAAAATTTTA+AGG | - | chr4.4:34627328-34627347 | None:intergenic | 15.0% |
| !! | AATTTAAACTAATATTTGCC+AGG | - | chr4.4:34628449-34628468 | None:intergenic | 20.0% |
| !! | ACGAAAATAAACAAGTATTA+GGG | - | chr4.4:34627188-34627207 | None:intergenic | 20.0% |
| !! | ATTTCGTAGTATTATCATAA+TGG | + | chr4.4:34628466-34628485 | MS.gene28944:intron | 20.0% |
| !! | CAATGATTAAATTTATGTCT+TGG | + | chr4.4:34627700-34627719 | MS.gene28944:intron | 20.0% |
| !! | CGTTTCAAAAAATAAACTAT+TGG | + | chr4.4:34628180-34628199 | MS.gene28944:intron | 20.0% |
| !! | TACGAAAATAAACAAGTATT+AGG | - | chr4.4:34627189-34627208 | None:intergenic | 20.0% |
| !! | TTAGTAATCCAAAAAATTTC+TGG | - | chr4.4:34627674-34627693 | None:intergenic | 20.0% |
| !!! | AATTACTGTTGTTGTTTAAT+TGG | + | chr4.4:34627485-34627504 | MS.gene28944:intron | 20.0% |
| !!! | GAAATTTTTCTTAAAACCTT+AGG | + | chr4.4:34627247-34627266 | MS.gene28944:intron | 20.0% |
| !!! | TGATCAAATTTTTAATGACA+AGG | + | chr4.4:34627637-34627656 | MS.gene28944:intron | 20.0% |
| !!! | TTAAACGCTTTTCAAATTTA+GGG | + | chr4.4:34626933-34626952 | MS.gene28944:intron | 20.0% |
| !!! | TTTTAAGGTAAAATATCAAG+TGG | - | chr4.4:34627313-34627332 | None:intergenic | 20.0% |
| ! | AAAACAAAAGGCCATTAAAA+AGG | - | chr4.4:34627954-34627973 | None:intergenic | 25.0% |
| ! | AAGAAAAGAATCATGCTAAT+TGG | + | chr4.4:34627225-34627244 | MS.gene28944:intron | 25.0% |
| ! | ACTTTGTGTAATAGATATTG+TGG | + | chr4.4:34627337-34627356 | MS.gene28944:intron | 25.0% |
| ! | AGTATTATCATAATGGTGTA+TGG | + | chr4.4:34628473-34628492 | MS.gene28944:intron | 25.0% |
| ! | ATAAAACGAATTGCTTCAAT+AGG | + | chr4.4:34627765-34627784 | MS.gene28944:intron | 25.0% |
| ! | GAAATAAGAAGAAAAGAGAA+AGG | - | chr4.4:34627077-34627096 | None:intergenic | 25.0% |
| ! | TAATAGATATTGTGGAATAG+AGG | + | chr4.4:34627345-34627364 | MS.gene28944:intron | 25.0% |
| ! | TGACAACACAGAATAATATA+GGG | - | chr4.4:34628613-34628632 | None:intergenic | 25.0% |
| ! | TTAAATTTATGTCTTGGAGA+TGG | + | chr4.4:34627706-34627725 | MS.gene28944:intron | 25.0% |
| ! | TTGACAACACAGAATAATAT+AGG | - | chr4.4:34628614-34628633 | None:intergenic | 25.0% |
| ! | TTTGATCCTAATTGTGTATT+CGG | + | chr4.4:34628100-34628119 | MS.gene28944:intron | 25.0% |
| !! | AACCTTGTTTGTATTATGAA+TGG | + | chr4.4:34627735-34627754 | MS.gene28944:intron | 25.0% |
| !! | ATTAACAATTTTATCGCATC+TGG | + | chr4.4:34628329-34628348 | MS.gene28944:intron | 25.0% |
| !! | ATTAGCATGATTCTTTTCTT+AGG | - | chr4.4:34627225-34627244 | None:intergenic | 25.0% |
| !! | GTCAATTTTCTAATGTCATT+GGG | + | chr4.4:34628629-34628648 | MS.gene28944:intron | 25.0% |
| !! | GTTAAACGCTTTTCAAATTT+AGG | + | chr4.4:34626932-34626951 | MS.gene28944:intron | 25.0% |
| !! | TCAAATTTTTAATGACAAGG+TGG | + | chr4.4:34627640-34627659 | MS.gene28944:intron | 25.0% |
| !! | TGTCAATTTTCTAATGTCAT+TGG | + | chr4.4:34628628-34628647 | MS.gene28944:intron | 25.0% |
| !!! | TGTTGTTGTTTAATTGGTTA+GGG | + | chr4.4:34627491-34627510 | MS.gene28944:intron | 25.0% |
| ATAATCACCACACAAAAACT+TGG | - | chr4.4:34627277-34627296 | None:intergenic | 30.0% | |
| ATTAGGTCATTGGAAACAAA+TGG | + | chr4.4:34626996-34627015 | MS.gene28944:intron | 30.0% | |
| CACCATTCATAATACAAACA+AGG | - | chr4.4:34627740-34627759 | None:intergenic | 30.0% | |
| GAAGAAAAGAGAAAGGATTA+AGG | - | chr4.4:34627070-34627089 | None:intergenic | 30.0% | |
| GCATTTCAAAATTTATCTCC+TGG | + | chr4.4:34628428-34628447 | MS.gene28944:intron | 30.0% | |
| TTAGGTCATTGGAAACAAAT+GGG | + | chr4.4:34626997-34627016 | MS.gene28944:intron | 30.0% | |
| TTGTTTCCAATGACCTAATT+GGG | - | chr4.4:34626995-34627014 | None:intergenic | 30.0% | |
| TTTCTCAATGAGATCAACAT+GGG | - | chr4.4:34628562-34628581 | None:intergenic | 30.0% | |
| TTTGTTTCCAATGACCTAAT+TGG | - | chr4.4:34626996-34627015 | None:intergenic | 30.0% | |
| ! | AATTTTTAATGACAAGGTGG+CGG | + | chr4.4:34627643-34627662 | MS.gene28944:intron | 30.0% |
| ! | AGGTTTTTAAACTAGTTGAG+AGG | + | chr4.4:34628255-34628274 | MS.gene28944:intron | 30.0% |
| ! | CTTCTTATTACTTCCTTTTG+GGG | + | chr4.4:34628023-34628042 | MS.gene28944:intron | 30.0% |
| ! | GCTTCTTATTACTTCCTTTT+GGG | + | chr4.4:34628022-34628041 | MS.gene28944:intron | 30.0% |
| ! | GGTTTTTAAACTAGTTGAGA+GGG | + | chr4.4:34628256-34628275 | MS.gene28944:intron | 30.0% |
| ! | TGTTTTGTCGCATTGTTAAT+AGG | + | chr4.4:34627887-34627906 | MS.gene28944:intron | 30.0% |
| !! | CTGTTGTTGTTTAATTGGTT+AGG | + | chr4.4:34627490-34627509 | MS.gene28944:intron | 30.0% |
| !! | TCTTCTTATTTCTGCATGTA+GGG | + | chr4.4:34627085-34627104 | MS.gene28944:intron | 30.0% |
| !! | TTCTTCTTATTTCTGCATGT+AGG | + | chr4.4:34627084-34627103 | MS.gene28944:intron | 30.0% |
| !!! | CGTTTTATTTTCTCCCAATT+AGG | + | chr4.4:34626979-34626998 | MS.gene28944:intron | 30.0% |
| AAACAAATGGGACTCTTATC+TGG | + | chr4.4:34627009-34627028 | MS.gene28944:CDS | 35.0% | |
| AAACGAATTGCTTCAATAGG+CGG | + | chr4.4:34627768-34627787 | MS.gene28944:intron | 35.0% | |
| AAATAAGTGTGATTGCAGAG+CGG | + | chr4.4:34628280-34628299 | MS.gene28944:intron | 35.0% | |
| AGACAGCTAGCTAAAACAAA+AGG | - | chr4.4:34627966-34627985 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | - | chr4.4:34626880-34626899 | None:intergenic | 35.0% | |
| GTTGTTTAATTGGTTAGGGT+TGG | + | chr4.4:34627495-34627514 | MS.gene28944:intron | 35.0% | |
| GTTTCTCAATGAGATCAACA+TGG | - | chr4.4:34628563-34628582 | None:intergenic | 35.0% | |
| TATTTGGCACGCAACAATTT+GGG | + | chr4.4:34627595-34627614 | MS.gene28944:intron | 35.0% | |
| TGGAAACCGAATACACAATT+AGG | - | chr4.4:34628109-34628128 | None:intergenic | 35.0% | |
| TTATTTGGCACGCAACAATT+TGG | + | chr4.4:34627594-34627613 | MS.gene28944:intron | 35.0% | |
| ! | ACAAAAACTTGGTAACCCTA+AGG | - | chr4.4:34627266-34627285 | None:intergenic | 35.0% |
| ! | AGAAAATGCGGAAAGGTTTT+TGG | + | chr4.4:34627570-34627589 | MS.gene28944:intron | 35.0% |
| ! | GAGCATTGTATTAGACTTAG+AGG | + | chr4.4:34627809-34627828 | MS.gene28944:intron | 35.0% |
| ! | GGCTTCTTATTACTTCCTTT+TGG | + | chr4.4:34628021-34628040 | MS.gene28944:intron | 35.0% |
| ! | GTTACACCTCAAAAGTTTTG+AGG | + | chr4.4:34627523-34627542 | MS.gene28944:intron | 35.0% |
| ! | TCAACACCTCAAAACTTTTG+AGG | - | chr4.4:34627532-34627551 | None:intergenic | 35.0% |
| ! | TTTTCTCCCAATTAGGTCAT+TGG | + | chr4.4:34626986-34627005 | MS.gene28944:intron | 35.0% |
| !! | TATTACTTCCTTTTGGGGAT+GGG | + | chr4.4:34628028-34628047 | MS.gene28944:intron | 35.0% |
| !! | TTATTACTTCCTTTTGGGGA+TGG | + | chr4.4:34628027-34628046 | MS.gene28944:intron | 35.0% |
| !!! | AAAAGTTTTGAGGTGTTGAG+TGG | + | chr4.4:34627533-34627552 | MS.gene28944:intron | 35.0% |
| !!! | AAAGTTTTGAGGTGTTGAGT+GGG | + | chr4.4:34627534-34627553 | MS.gene28944:intron | 35.0% |
| !!! | CGGTTGATCCAGAAATTTTT+TGG | + | chr4.4:34627663-34627682 | MS.gene28944:intron | 35.0% |
| !!! | GGAAAGGTTTTTGGCTTATT+TGG | + | chr4.4:34627579-34627598 | MS.gene28944:intron | 35.0% |
| !!! | GTAGCATTTTTGAGATGGTT+GGG | + | chr4.4:34627853-34627872 | MS.gene28944:intron | 35.0% |
| !!! | TGTAGCATTTTTGAGATGGT+TGG | + | chr4.4:34627852-34627871 | MS.gene28944:intron | 35.0% |
| AATAAGTGTGATTGCAGAGC+GGG | + | chr4.4:34628281-34628300 | MS.gene28944:intron | 40.0% | |
| ACGAAACACTGACACATACA+CGG | - | chr4.4:34628235-34628254 | None:intergenic | 40.0% | |
| ATATTTAAGGGACGCAGTCA+GGG | - | chr4.4:34628392-34628411 | None:intergenic | 40.0% | |
| CATACATTTGCTTGCAGCTA+TGG | + | chr4.4:34628663-34628682 | MS.gene28944:intron | 40.0% | |
| CTAGTCCTGAAATTTGTGTG+CGG | + | chr4.4:34627927-34627946 | MS.gene28944:intron | 40.0% | |
| CTGTCTGTTGTGTGTAAACT+TGG | + | chr4.4:34627980-34627999 | MS.gene28944:intron | 40.0% | |
| GTTGTGTGTAAACTTGGACA+GGG | + | chr4.4:34627986-34628005 | MS.gene28944:intron | 40.0% | |
| TATATTTAAGGGACGCAGTC+AGG | - | chr4.4:34628393-34628412 | None:intergenic | 40.0% | |
| TATTGTGGAATAGAGGAGCA+TGG | + | chr4.4:34627352-34627371 | MS.gene28944:intron | 40.0% | |
| TCCACAAGTGAAACAACGAA+CGG | - | chr4.4:34626840-34626859 | None:intergenic | 40.0% | |
| TGTATGTGTCAGTGTTTCGT+AGG | + | chr4.4:34628235-34628254 | MS.gene28944:intron | 40.0% | |
| TGTTGTGTGTAAACTTGGAC+AGG | + | chr4.4:34627985-34628004 | MS.gene28944:intron | 40.0% | |
| TTCAAGCCGATTACACTGAA+GGG | + | chr4.4:34627038-34627057 | MS.gene28944:CDS | 40.0% | |
| TTGTGTGTAAACTTGGACAG+GGG | + | chr4.4:34627987-34628006 | MS.gene28944:intron | 40.0% | |
| ! | AGGGTTACCAAGTTTTTGTG+TGG | + | chr4.4:34627267-34627286 | MS.gene28944:intron | 40.0% |
| ! | GCACTGACACTTATAATCGA+AGG | + | chr4.4:34627406-34627425 | MS.gene28944:intron | 40.0% |
| ! | GGGTTTTTGTCTATGCGTTT+AGG | + | chr4.4:34628048-34628067 | MS.gene28944:intron | 40.0% |
| ! | TCGTTGTTTCACTTGTGGAA+AGG | + | chr4.4:34626841-34626860 | MS.gene28944:CDS | 40.0% |
| ! | TTGTGTGCGGTCCTTTTTAA+TGG | + | chr4.4:34627940-34627959 | MS.gene28944:intron | 40.0% |
| !! | CTGCTGTAGCATTTTTGAGA+TGG | + | chr4.4:34627848-34627867 | MS.gene28944:intron | 40.0% |
| !! | TAATTGGTTAGGGTTGGTTG+TGG | + | chr4.4:34627501-34627520 | MS.gene28944:intron | 40.0% |
| !!! | TGGACAGGGGTTGTTTTTAT+TGG | + | chr4.4:34628000-34628019 | MS.gene28944:intron | 40.0% |
| AAAACAGCCCAACCACAACA+AGG | - | chr4.4:34628079-34628098 | None:intergenic | 45.0% | |
| AAGGACCGCACACAAATTTC+AGG | - | chr4.4:34627935-34627954 | None:intergenic | 45.0% | |
| ACGCAACAATTTGGGTGCTT+TGG | + | chr4.4:34627603-34627622 | MS.gene28944:intron | 45.0% | |
| AGTGGAGAGAAAATGCGGAA+AGG | + | chr4.4:34627563-34627582 | MS.gene28944:intron | 45.0% | |
| CACTGACCCTTCAGTGTAAT+CGG | - | chr4.4:34627047-34627066 | None:intergenic | 45.0% | |
| CCACAAGTGAAACAACGAAC+GGG | - | chr4.4:34626839-34626858 | None:intergenic | 45.0% | |
| CTTCAAGCCGATTACACTGA+AGG | + | chr4.4:34627037-34627056 | MS.gene28944:CDS | 45.0% | |
| GACAAAAACCCATCCCCAAA+AGG | - | chr4.4:34628039-34628058 | None:intergenic | 45.0% | |
| GAGATGGTTGGGTGATCTAT+TGG | + | chr4.4:34627864-34627883 | MS.gene28944:intron | 45.0% | |
| GTCGCATTGTTAATAGGCAG+TGG | + | chr4.4:34627893-34627912 | MS.gene28944:intron | 45.0% | |
| TAAAAGACGTGCAAGAGAGC+TGG | - | chr4.4:34628129-34628148 | None:intergenic | 45.0% | |
| TACAGCAGAAAGCAAACAGC+AGG | - | chr4.4:34627836-34627855 | None:intergenic | 45.0% | |
| TAGGGAGTGGAGAGAAAATG+CGG | + | chr4.4:34627558-34627577 | MS.gene28944:intron | 45.0% | |
| TTTGCTTGCAGCTATGGAGA+AGG | + | chr4.4:34628669-34628688 | MS.gene28944:intron | 45.0% | |
| ! | GTTTAGGTGTTGCCTTGTTG+TGG | + | chr4.4:34628064-34628083 | MS.gene28944:intron | 45.0% |
| ! | TATGGATTGCAGAGATGCAC+TGG | + | chr4.4:34628491-34628510 | MS.gene28944:intron | 45.0% |
| !! | TTGAGGTGTTGAGTGGGTTA+GGG | + | chr4.4:34627540-34627559 | MS.gene28944:intron | 45.0% |
| !! | TTTGAGGTGTTGAGTGGGTT+AGG | + | chr4.4:34627539-34627558 | MS.gene28944:intron | 45.0% |
| !!! | ATTTTGATTAATAAAAAAAA+AGG | - | chr4.4:34627117-34627136 | None:intergenic | 5.0% |
| !!! | TTTTGATTAATAAAAAAAAA+GGG | - | chr4.4:34627116-34627135 | None:intergenic | 5.0% |
| AGAGATGCACTGGATGCGTT+GGG | + | chr4.4:34628501-34628520 | MS.gene28944:intron | 50.0% | |
| ATTGCTTCAATAGGCGGTGG+TGG | + | chr4.4:34627774-34627793 | MS.gene28944:intron | 50.0% | |
| CGAATTGCTTCAATAGGCGG+TGG | + | chr4.4:34627771-34627790 | MS.gene28944:intron | 50.0% | |
| GGTGTATCAGCGTCAATGCT+GGG | + | chr4.4:34628201-34628220 | MS.gene28944:intron | 50.0% | |
| TGGTGTATCAGCGTCAATGC+TGG | + | chr4.4:34628200-34628219 | MS.gene28944:intron | 50.0% | |
| TTGCTTCAATAGGCGGTGGT+GGG | + | chr4.4:34627775-34627794 | MS.gene28944:intron | 50.0% | |
| ! | AGGTGTTGCCTTGTTGTGGT+TGG | + | chr4.4:34628068-34628087 | MS.gene28944:intron | 50.0% |
| ! | CCCGTTCGTTGTTTCACTTG+TGG | + | chr4.4:34626836-34626855 | MS.gene28944:CDS | 50.0% |
| ! | GGTGTTGCCTTGTTGTGGTT+GGG | + | chr4.4:34628069-34628088 | MS.gene28944:intron | 50.0% |
| !! | GTCTGGTTCGGTATTGTTGC+AGG | + | chr4.4:34628523-34628542 | MS.gene28944:CDS | 50.0% |
| ATCAGCGTCAATGCTGGGTC+TGG | + | chr4.4:34628206-34628225 | MS.gene28944:intron | 55.0% | |
| CAGAGATGCACTGGATGCGT+TGG | + | chr4.4:34628500-34628519 | MS.gene28944:intron | 55.0% | |
| TGGATGCGTTGGGTCTGGTT+CGG | + | chr4.4:34628511-34628530 | MS.gene28944:CDS | 55.0% | |
| !! | GTGTTGAGTGGGTTAGGGAG+TGG | + | chr4.4:34627545-34627564 | MS.gene28944:intron | 55.0% |
| TGCACTGGATGCGTTGGGTC+TGG | + | chr4.4:34628506-34628525 | MS.gene28944:CDS | 60.0% | |
| !! | CTTCAATAGGCGGTGGTGGG+TGG | + | chr4.4:34627778-34627797 | MS.gene28944:intron | 60.0% |
| !! | GCGGTGGTGGGTGGTTGTGT+TGG | + | chr4.4:34627787-34627806 | MS.gene28944:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 34626827 | 34628705 | 34626827 | ID=MS.gene28944 |
| chr4.4 | mRNA | 34626827 | 34628705 | 34626827 | ID=MS.gene28944.t1;Parent=MS.gene28944 |
| chr4.4 | exon | 34626827 | 34626862 | 34626827 | ID=MS.gene28944.t1.exon1;Parent=MS.gene28944.t1 |
| chr4.4 | CDS | 34626827 | 34626862 | 34626827 | ID=cds.MS.gene28944.t1;Parent=MS.gene28944.t1 |
| chr4.4 | exon | 34627001 | 34627059 | 34627001 | ID=MS.gene28944.t1.exon2;Parent=MS.gene28944.t1 |
| chr4.4 | CDS | 34627001 | 34627059 | 34627001 | ID=cds.MS.gene28944.t1;Parent=MS.gene28944.t1 |
| chr4.4 | exon | 34628503 | 34628597 | 34628503 | ID=MS.gene28944.t1.exon3;Parent=MS.gene28944.t1 |
| chr4.4 | CDS | 34628503 | 34628597 | 34628503 | ID=cds.MS.gene28944.t1;Parent=MS.gene28944.t1 |
| chr4.4 | exon | 34628680 | 34628705 | 34628680 | ID=MS.gene28944.t1.exon4;Parent=MS.gene28944.t1 |
| chr4.4 | CDS | 34628680 | 34628705 | 34628680 | ID=cds.MS.gene28944.t1;Parent=MS.gene28944.t1 |
| Gene Sequence |
| Protein sequence |
