Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41606.t1 | XP_003602698.2 | 98.4 | 306 | 5 | 0 | 1 | 306 | 601 | 906 | 6.00E-170 | 606.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41606.t1 | P41842 | 33.9 | 118 | 77 | 1 | 14 | 131 | 488 | 604 | 1.5e-12 | 75.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41606.t1 | G7J2N4 | 98.4 | 306 | 5 | 0 | 1 | 306 | 601 | 906 | 4.4e-170 | 606.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene41606 | 0.866746 | 2.28E-65 | -1.69E-46 |
| MS.gene049824 | MS.gene41606 | 0.868698 | 5.38E-66 | -1.69E-46 |
| MS.gene049825 | MS.gene41606 | 0.875027 | 4.26E-68 | -1.69E-46 |
| MS.gene049873 | MS.gene41606 | 0.865475 | 5.75E-65 | -1.69E-46 |
| MS.gene050277 | MS.gene41606 | 0.800228 | 1.59E-48 | -1.69E-46 |
| MS.gene050303 | MS.gene41606 | 0.828261 | 9.92E-55 | -1.69E-46 |
| MS.gene050355 | MS.gene41606 | 0.803811 | 2.92E-49 | -1.69E-46 |
| MS.gene050427 | MS.gene41606 | 0.804501 | 2.10E-49 | -1.69E-46 |
| MS.gene050885 | MS.gene41606 | 0.825526 | 4.47E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene41606 | 0.80132 | 9.52E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene41606 | 0.808526 | 2.97E-50 | -1.69E-46 |
| MS.gene053080 | MS.gene41606 | 0.835839 | 1.33E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene41606 | 0.845145 | 4.87E-59 | -1.69E-46 |
| MS.gene053294 | MS.gene41606 | 0.820647 | 6.14E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene41606 | 0.80152 | 8.66E-49 | -1.69E-46 |
| MS.gene053995 | MS.gene41606 | 0.833594 | 4.88E-56 | -1.69E-46 |
| MS.gene055309 | MS.gene41606 | 0.871357 | 7.27E-67 | -1.69E-46 |
| MS.gene05548 | MS.gene41606 | 0.822723 | 2.03E-53 | -1.69E-46 |
| MS.gene055555 | MS.gene41606 | 0.816891 | 4.38E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene41606 | 0.802764 | 4.81E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene41606 | 0.87956 | 1.13E-69 | -1.69E-46 |
| MS.gene056091 | MS.gene41606 | 0.864999 | 8.11E-65 | -1.69E-46 |
| MS.gene056403 | MS.gene41606 | 0.827168 | 1.82E-54 | -1.69E-46 |
| MS.gene056605 | MS.gene41606 | 0.817401 | 3.36E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene41606 | 0.803724 | 3.04E-49 | -1.69E-46 |
| MS.gene05689 | MS.gene41606 | 0.808786 | 2.61E-50 | -1.69E-46 |
| MS.gene057079 | MS.gene41606 | 0.810624 | 1.05E-50 | -1.69E-46 |
| MS.gene057555 | MS.gene41606 | 0.831316 | 1.79E-55 | -1.69E-46 |
| MS.gene057705 | MS.gene41606 | 0.832217 | 1.07E-55 | -1.69E-46 |
| MS.gene059317 | MS.gene41606 | 0.804476 | 2.12E-49 | -1.69E-46 |
| MS.gene05953 | MS.gene41606 | 0.839194 | 1.83E-57 | -1.69E-46 |
| MS.gene05954 | MS.gene41606 | 0.867793 | 1.05E-65 | -1.69E-46 |
| MS.gene059830 | MS.gene41606 | 0.802958 | 4.38E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene41606 | 0.86981 | 2.34E-66 | -1.69E-46 |
| MS.gene060429 | MS.gene41606 | 0.837829 | 4.12E-57 | -1.69E-46 |
| MS.gene060586 | MS.gene41606 | 0.810804 | 9.61E-51 | -1.69E-46 |
| MS.gene060830 | MS.gene41606 | 0.849436 | 3.24E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTTTATTTTATATTGT+TGG | - | 24166:4069-4088 | MS.gene41606:intron | 10.0% |
| !! | ACTTATAATTGAAAATACAA+AGG | + | 24166:5602-5621 | MS.gene41606:intergenic | 15.0% |
| !! | ATTACTAGTATTAATCATTA+TGG | + | 24166:3640-3659 | MS.gene41606:intergenic | 15.0% |
| !! | CAGCAAAATAATAATAAATA+GGG | + | 24166:5143-5162 | MS.gene41606:intergenic | 15.0% |
| !! | TCAGCAAAATAATAATAAAT+AGG | + | 24166:5144-5163 | MS.gene41606:intergenic | 15.0% |
| !! | TTATTATGATATAAAATGCA+AGG | - | 24166:4593-4612 | MS.gene41606:intron | 15.0% |
| !!! | TATTTAAAAGCATCTATTTT+CGG | - | 24166:3350-3369 | MS.gene41606:intron | 15.0% |
| !! | ACTTTAATAATGAATAGTCA+TGG | + | 24166:2791-2810 | MS.gene41606:intergenic | 20.0% |
| !! | ATAAGAAAAAACAGTTGTTA+TGG | - | 24166:3686-3705 | MS.gene41606:intron | 20.0% |
| !! | ATAATTGAAAATACAAAGGT+AGG | + | 24166:5598-5617 | MS.gene41606:intergenic | 20.0% |
| !! | CTTTAATAATGAATAGTCAT+GGG | + | 24166:2790-2809 | MS.gene41606:intergenic | 20.0% |
| !! | TAAGAAAAAACAGTTGTTAT+GGG | - | 24166:3687-3706 | MS.gene41606:intron | 20.0% |
| !! | TAATTGAAAATACAAAGGTA+GGG | + | 24166:5597-5616 | MS.gene41606:intergenic | 20.0% |
| !! | TGATACAGATAGTTAAAAAT+GGG | - | 24166:5161-5180 | MS.gene41606:intron | 20.0% |
| !!! | AATCTTTGCTTGTTAAATAA+AGG | - | 24166:5079-5098 | MS.gene41606:intron | 20.0% |
| !!! | AATTACAAATTTCCATGTTT+TGG | - | 24166:3047-3066 | MS.gene41606:intron | 20.0% |
| !!! | AATTTATTACTTGTTTTCTC+AGG | - | 24166:5945-5964 | MS.gene41606:intron | 20.0% |
| !!! | AGAAATTATGTCATATCTTT+TGG | + | 24166:5338-5357 | MS.gene41606:intergenic | 20.0% |
| !!! | AGATGCTTTTAAATAATTAC+AGG | + | 24166:3345-3364 | MS.gene41606:intergenic | 20.0% |
| !!! | AGATTTTATTGTAAATCTAG+TGG | + | 24166:2727-2746 | MS.gene41606:intergenic | 20.0% |
| !!! | ATTGTTCAATAACATGTTTT+TGG | - | 24166:5434-5453 | MS.gene41606:CDS | 20.0% |
| !!! | ATTTAAAAGCATCTATTTTC+GGG | - | 24166:3351-3370 | MS.gene41606:intron | 20.0% |
| !!! | TATTTGATGCTTTATCATTT+TGG | - | 24166:3513-3532 | MS.gene41606:intron | 20.0% |
| ! | AAAAATTTGGCTACATAGTA+AGG | - | 24166:3413-3432 | MS.gene41606:CDS | 25.0% |
| ! | AAAATTGTGAATTGGACAAT+TGG | - | 24166:4505-4524 | MS.gene41606:intron | 25.0% |
| ! | AAAGTAAGAAACAGAAAACA+AGG | + | 24166:3097-3116 | MS.gene41606:intergenic | 25.0% |
| ! | AAATTGTGAATTGGACAATT+GGG | - | 24166:4506-4525 | MS.gene41606:intron | 25.0% |
| ! | AAGTAAGAAACAGAAAACAA+GGG | + | 24166:3096-3115 | MS.gene41606:intergenic | 25.0% |
| ! | AAGTTAGGTGAAATTTAAGA+GGG | + | 24166:3451-3470 | MS.gene41606:intergenic | 25.0% |
| ! | AATACTAAACTTGAACTTCA+AGG | + | 24166:3820-3839 | MS.gene41606:intergenic | 25.0% |
| ! | ACAGTCAAATTTATCAAAGT+AGG | + | 24166:2865-2884 | MS.gene41606:intergenic | 25.0% |
| ! | AGTATTAATCATTATGGACA+GGG | + | 24166:3634-3653 | MS.gene41606:intergenic | 25.0% |
| ! | ATCAAATTGCCATAACAATA+AGG | + | 24166:4292-4311 | MS.gene41606:intergenic | 25.0% |
| ! | ATTGTTATGGCAATTTGATT+GGG | - | 24166:4293-4312 | MS.gene41606:intron | 25.0% |
| ! | CAAATGTTTCCTTATTGTTA+TGG | - | 24166:4280-4299 | MS.gene41606:intron | 25.0% |
| ! | CTGATACAGATAGTTAAAAA+TGG | - | 24166:5160-5179 | MS.gene41606:intron | 25.0% |
| ! | CTTCTATGTCACATATATAT+CGG | - | 24166:3859-3878 | MS.gene41606:CDS | 25.0% |
| ! | GTTCCTAATGTTAATGTTAA+TGG | + | 24166:5534-5553 | MS.gene41606:intergenic | 25.0% |
| ! | TAAAACACATATATCAGAGT+AGG | + | 24166:3912-3931 | MS.gene41606:intergenic | 25.0% |
| ! | TAAGTTAGGTGAAATTTAAG+AGG | + | 24166:3452-3471 | MS.gene41606:intergenic | 25.0% |
| ! | TAGTATTAATCATTATGGAC+AGG | + | 24166:3635-3654 | MS.gene41606:intergenic | 25.0% |
| ! | TATGATATAAAATGCAAGGT+TGG | - | 24166:4597-4616 | MS.gene41606:intron | 25.0% |
| ! | TATGTTTAACCTAATATTGC+AGG | - | 24166:3745-3764 | MS.gene41606:CDS | 25.0% |
| ! | TATTGTTATGGCAATTTGAT+TGG | - | 24166:4292-4311 | MS.gene41606:intron | 25.0% |
| ! | TGTCCAATTATATTCTTTCA+GGG | - | 24166:5700-5719 | MS.gene41606:intron | 25.0% |
| ! | TTGTCCAATTATATTCTTTC+AGG | - | 24166:5699-5718 | MS.gene41606:intron | 25.0% |
| !! | ATCATTTTGGATTATCCATA+GGG | - | 24166:3526-3545 | MS.gene41606:intron | 25.0% |
| !! | CTAGTTTGGTAAATTCTTTT+AGG | - | 24166:4671-4690 | MS.gene41606:intron | 25.0% |
| !! | CTTTTAAATAATTACAGGTG+AGG | + | 24166:3340-3359 | MS.gene41606:intergenic | 25.0% |
| !! | TATCATTTTGGATTATCCAT+AGG | - | 24166:3525-3544 | MS.gene41606:intron | 25.0% |
| !!! | ATCTTTGATCTCTTGTTTTT+TGG | - | 24166:5622-5641 | MS.gene41606:intron | 25.0% |
| !!! | ATGAACTTAATTTCGAGTTA+TGG | - | 24166:4237-4256 | MS.gene41606:intron | 25.0% |
| !!! | GTTTAATTTTCACTTCATCA+AGG | + | 24166:6017-6036 | MS.gene41606:intergenic | 25.0% |
| AAGTGCAAACAGTTTATTTC+AGG | - | 24166:2919-2938 | MS.gene41606:CDS | 30.0% | |
| AATTTATCAAAGTAGGCTGT+AGG | + | 24166:2858-2877 | MS.gene41606:intergenic | 30.0% | |
| AGAAGAATTCAAGGATATTC+AGG | - | 24166:5987-6006 | MS.gene41606:intron | 30.0% | |
| AGTAAGAAACAGAAAACAAG+GGG | + | 24166:3095-3114 | MS.gene41606:intergenic | 30.0% | |
| AGTGCAAACAGTTTATTTCA+GGG | - | 24166:2920-2939 | MS.gene41606:CDS | 30.0% | |
| ATATCCTGTAGAAACTGAAT+CGG | - | 24166:3553-3572 | MS.gene41606:intron | 30.0% | |
| ATCATTAGTACAAAGCAAGA+AGG | + | 24166:3726-3745 | MS.gene41606:intergenic | 30.0% | |
| ATTACCACTTATGTTACTGT+TGG | - | 24166:2967-2986 | MS.gene41606:intron | 30.0% | |
| ATTGGAAAGAATCACAAATG+AGG | - | 24166:4755-4774 | MS.gene41606:intron | 30.0% | |
| CATTTCAGCATGCATATATT+AGG | + | 24166:3885-3904 | MS.gene41606:intergenic | 30.0% | |
| CCACCATTAACATTAACATT+AGG | - | 24166:5528-5547 | MS.gene41606:intron | 30.0% | |
| CCTAATGTTAATGTTAATGG+TGG | + | 24166:5531-5550 | MS.gene41606:intergenic | 30.0% | |
| CTTAAAAGCTAGCTATCAAT+GGG | - | 24166:4392-4411 | MS.gene41606:intron | 30.0% | |
| GAACCCTGAAAGAATATAAT+TGG | + | 24166:5706-5725 | MS.gene41606:intergenic | 30.0% | |
| GCTGTCATAAAATTGTGAAT+TGG | - | 24166:4497-4516 | MS.gene41606:intron | 30.0% | |
| GGCTTCTTTAAATGCAATAA+AGG | + | 24166:3799-3818 | MS.gene41606:intergenic | 30.0% | |
| TAAAGAGAGACAATAAAGGT+GGG | - | 24166:4529-4548 | MS.gene41606:intron | 30.0% | |
| TACATAGTAAGGAGAAAATC+AGG | - | 24166:3424-3443 | MS.gene41606:CDS | 30.0% | |
| TATATTAAGACAACAGATGC+AGG | + | 24166:5678-5697 | MS.gene41606:intergenic | 30.0% | |
| TGATATGTACTTGACCTTAA+GGG | + | 24166:5301-5320 | MS.gene41606:intergenic | 30.0% | |
| TTAAAAGCTAGCTATCAATG+GGG | - | 24166:4393-4412 | MS.gene41606:intron | 30.0% | |
| TTTGATCAAGAAAAAGAGCA+AGG | - | 24166:3770-3789 | MS.gene41606:CDS | 30.0% | |
| ! | AAGATGCTTTTGCAAACTTT+TGG | + | 24166:5756-5775 | MS.gene41606:intergenic | 30.0% |
| ! | ATGTTAATGTTAATGGTGGA+TGG | + | 24166:5527-5546 | MS.gene41606:intergenic | 30.0% |
| ! | ATTTAGAACGCAGACAAATA+AGG | + | 24166:4323-4342 | MS.gene41606:intergenic | 30.0% |
| ! | GAATTTTATTACTGAGCTCA+CGG | + | 24166:3603-3622 | MS.gene41606:intergenic | 30.0% |
| ! | TTTAGAACGCAGACAAATAA+GGG | + | 24166:4322-4341 | MS.gene41606:intergenic | 30.0% |
| !! | AAGAGTAGACACAGTTTTAT+TGG | - | 24166:4737-4756 | MS.gene41606:intron | 30.0% |
| !! | CTTAATTTCGAGTTATGGTA+TGG | - | 24166:4242-4261 | MS.gene41606:intron | 30.0% |
| !!! | AGTGACGGTATTTTAGTATT+AGG | - | 24166:2832-2851 | MS.gene41606:CDS | 30.0% |
| !!! | ATGCTTATTTTGCAAATGTG+TGG | + | 24166:5386-5405 | MS.gene41606:intergenic | 30.0% |
| !!! | CAGGCAAGATATTTGTTTTA+AGG | - | 24166:5871-5890 | MS.gene41606:intron | 30.0% |
| !!! | CATTGATAGCTAGCTTTTAA+GGG | + | 24166:4393-4412 | MS.gene41606:intergenic | 30.0% |
| AAAATGACTCAAACACGTGA+TGG | - | 24166:4094-4113 | MS.gene41606:intron | 35.0% | |
| AAAGAGAGACAATAAAGGTG+GGG | - | 24166:4530-4549 | MS.gene41606:intron | 35.0% | |
| AACACATATATCAGAGTAGG+TGG | + | 24166:3909-3928 | MS.gene41606:intergenic | 35.0% | |
| AACATCAAGAGCAAGTATCT+GGG | - | 24166:4874-4893 | MS.gene41606:CDS | 35.0% | |
| AAGGTCATGCAAAAGATAAG+TGG | - | 24166:5098-5117 | MS.gene41606:intron | 35.0% | |
| ACTAACCATAGAAGTTCAAC+AGG | - | 24166:3137-3156 | MS.gene41606:intron | 35.0% | |
| AGAAAGCAAGAACTACATAC+AGG | + | 24166:3251-3270 | MS.gene41606:intergenic | 35.0% | |
| AGGCTTATTATCAGTTGTCA+CGG | + | 24166:4817-4836 | MS.gene41606:intergenic | 35.0% | |
| ATAGCCAACAGTAACATAAG+TGG | + | 24166:2974-2993 | MS.gene41606:intergenic | 35.0% | |
| ATCTCAACATTAAACCCAAC+AGG | + | 24166:3478-3497 | MS.gene41606:intergenic | 35.0% | |
| ATGCAGAACTGATCTGTATT+AGG | + | 24166:4837-4856 | MS.gene41606:intergenic | 35.0% | |
| ATGGAAATATCCACATCAAG+TGG | - | 24166:5796-5815 | MS.gene41606:intron | 35.0% | |
| ATTCCTTCTACTTAGTGAAG+TGG | - | 24166:4983-5002 | MS.gene41606:intron | 35.0% | |
| CAGATAGTTAAAAATGGGAG+TGG | - | 24166:5166-5185 | MS.gene41606:intron | 35.0% | |
| CATTGCAAATTTAGCCATCT+AGG | - | 24166:3941-3960 | MS.gene41606:CDS | 35.0% | |
| CCTTAAAAGCTAGCTATCAA+TGG | - | 24166:4391-4410 | MS.gene41606:intron | 35.0% | |
| CTGATATGTACTTGACCTTA+AGG | + | 24166:5302-5321 | MS.gene41606:intergenic | 35.0% | |
| GAACAATTAATGTTGTCGCT+TGG | - | 24166:4912-4931 | MS.gene41606:intron | 35.0% | |
| GATCAAATGCCTGCAATATT+AGG | + | 24166:3757-3776 | MS.gene41606:intergenic | 35.0% | |
| GCTAAATGGCACAGAATTAA+GGG | - | 24166:5217-5236 | MS.gene41606:intron | 35.0% | |
| GTAAAGAGAGACAATAAAGG+TGG | - | 24166:4528-4547 | MS.gene41606:intron | 35.0% | |
| GTGTTAATGTGTATCCTAGA+TGG | + | 24166:3958-3977 | MS.gene41606:intergenic | 35.0% | |
| GTTAAAAATGGGAGTGGATA+TGG | - | 24166:5172-5191 | MS.gene41606:intron | 35.0% | |
| TAACCACTTCACTAAGTAGA+AGG | + | 24166:4989-5008 | MS.gene41606:intergenic | 35.0% | |
| TATATGTTGCACCACCTAAT+TGG | - | 24166:3005-3024 | MS.gene41606:intron | 35.0% | |
| TCAAATTCAATGCCTAGCTA+AGG | - | 24166:6042-6061 | MS.gene41606:CDS | 35.0% | |
| TCGTCTGTTACAAATCATCA+TGG | + | 24166:3980-3999 | MS.gene41606:intergenic | 35.0% | |
| TGCTAAATGGCACAGAATTA+AGG | - | 24166:5216-5235 | MS.gene41606:intron | 35.0% | |
| TGGGTAAAGAGAGACAATAA+AGG | - | 24166:4525-4544 | MS.gene41606:intron | 35.0% | |
| TTACCAAACTAGATGAGCAA+TGG | + | 24166:4663-4682 | MS.gene41606:intergenic | 35.0% | |
| ! | ACAATTTTATGACAGCGACT+TGG | + | 24166:4493-4512 | MS.gene41606:intergenic | 35.0% |
| ! | ATGCTCCATGGAGTATTTAA+GGG | + | 24166:4430-4449 | MS.gene41606:intergenic | 35.0% |
| ! | TCTGGGGTTTATATGCTAAA+TGG | - | 24166:5203-5222 | MS.gene41606:intron | 35.0% |
| ! | TGGTAAATTCTTTTAGGCAC+TGG | - | 24166:4677-4696 | MS.gene41606:intron | 35.0% |
| !! | AAGCATCTTTAGAACTTTGC+AGG | - | 24166:5767-5786 | MS.gene41606:intron | 35.0% |
| !! | AGCATCTTTAGAACTTTGCA+GGG | - | 24166:5768-5787 | MS.gene41606:intron | 35.0% |
| !! | AGCTAGGCATTGAATTTGAT+TGG | + | 24166:6041-6060 | MS.gene41606:intergenic | 35.0% |
| !!! | CCATTGATAGCTAGCTTTTA+AGG | + | 24166:4394-4413 | MS.gene41606:intergenic | 35.0% |
| AACCCAACAGGAAGTAAGTT+AGG | + | 24166:3466-3485 | MS.gene41606:intergenic | 40.0% | |
| AATCCCACATAGAGCAGTAT+TGG | + | 24166:4453-4472 | MS.gene41606:intergenic | 40.0% | |
| AGATGCAGGAGAAATTTCAG+AGG | + | 24166:5664-5683 | MS.gene41606:intergenic | 40.0% | |
| ATCCTGACAAACCAATTAGG+TGG | + | 24166:3019-3038 | MS.gene41606:intergenic | 40.0% | |
| ATGAACTCGATGTTTCCAGA+TGG | - | 24166:2619-2638 | MS.gene41606:CDS | 40.0% | |
| CACCTAACTTACTTCCTGTT+GGG | - | 24166:3461-3480 | MS.gene41606:CDS | 40.0% | |
| CATCCAATACTGCTCTATGT+GGG | - | 24166:4447-4466 | MS.gene41606:intron | 40.0% | |
| CTACAGGATATTTGTCCCTA+TGG | + | 24166:3544-3563 | MS.gene41606:intergenic | 40.0% | |
| CTCTGACACAGAAGAATTCA+AGG | - | 24166:5978-5997 | MS.gene41606:intron | 40.0% | |
| CTTGAAGAACATTTGCAGAC+AGG | - | 24166:5852-5871 | MS.gene41606:intron | 40.0% | |
| CTTTAGACACTGCCAAAACA+TGG | + | 24166:3062-3081 | MS.gene41606:intergenic | 40.0% | |
| GAACATCAAGAGCAAGTATC+TGG | - | 24166:4873-4892 | MS.gene41606:CDS | 40.0% | |
| GATCAAGAAAAAGAGCAAGG+AGG | - | 24166:3773-3792 | MS.gene41606:CDS | 40.0% | |
| GATGCAGGAGAAATTTCAGA+GGG | + | 24166:5663-5682 | MS.gene41606:intergenic | 40.0% | |
| GCATATAAACCCCAGATTTC+AGG | + | 24166:5199-5218 | MS.gene41606:intergenic | 40.0% | |
| GCATCAAATATACTCCAAGC+TGG | + | 24166:3503-3522 | MS.gene41606:intergenic | 40.0% | |
| GCATTACATGCAGTGTTTGT+TGG | - | 24166:5402-5421 | MS.gene41606:intron | 40.0% | |
| GCTGTGATACCAAGGTAAAA+GGG | + | 24166:3581-3600 | MS.gene41606:intergenic | 40.0% | |
| GGAAAGAATCACAAATGAGG+TGG | - | 24166:4758-4777 | MS.gene41606:intron | 40.0% | |
| GGCTTATTATCAGTTGTCAC+GGG | + | 24166:4816-4835 | MS.gene41606:intergenic | 40.0% | |
| TAATGTTGAGATCTCCAGCT+TGG | - | 24166:3486-3505 | MS.gene41606:intron | 40.0% | |
| TACTGCTCTATGTGGGATTT+AGG | - | 24166:4454-4473 | MS.gene41606:intron | 40.0% | |
| TCACAAATGAGGTGGAAAAG+CGG | - | 24166:4766-4785 | MS.gene41606:intron | 40.0% | |
| TCACCTAACTTACTTCCTGT+TGG | - | 24166:3460-3479 | MS.gene41606:CDS | 40.0% | |
| TCTCCATTGCTCATCTAGTT+TGG | - | 24166:4657-4676 | MS.gene41606:intron | 40.0% | |
| TGGATATGGACCTGAAATCT+GGG | - | 24166:5186-5205 | MS.gene41606:intron | 40.0% | |
| TTATTATCAGTTGTCACGGG+AGG | + | 24166:4813-4832 | MS.gene41606:intergenic | 40.0% | |
| TTTGCAAATGTGTGGCGATA+GGG | + | 24166:5378-5397 | MS.gene41606:intergenic | 40.0% | |
| TTTGTAACAGACGAAACAGC+TGG | - | 24166:3986-4005 | MS.gene41606:intron | 40.0% | |
| ! | ACAGCGACTTGGATATTATG+GGG | + | 24166:4482-4501 | MS.gene41606:intergenic | 40.0% |
| ! | CATGCAGTGTTTGTTGGAAA+AGG | - | 24166:5408-5427 | MS.gene41606:intron | 40.0% |
| ! | GACAGCGACTTGGATATTAT+GGG | + | 24166:4483-4502 | MS.gene41606:intergenic | 40.0% |
| ! | GATGCTCCATGGAGTATTTA+AGG | + | 24166:4431-4450 | MS.gene41606:intergenic | 40.0% |
| ! | GCTTGGAAATGTTTTACAGC+AGG | - | 24166:4929-4948 | MS.gene41606:intron | 40.0% |
| ! | GGATCGAACTTGCTTCAAAA+GGG | + | 24166:5266-5285 | MS.gene41606:intergenic | 40.0% |
| ! | TCTTTCAGGGTTCTGATACA+TGG | - | 24166:5713-5732 | MS.gene41606:intron | 40.0% |
| ! | TGACAGCGACTTGGATATTA+TGG | + | 24166:4484-4503 | MS.gene41606:intergenic | 40.0% |
| ! | TGCTCCATGGAGTATTTAAG+GGG | + | 24166:4429-4448 | MS.gene41606:intergenic | 40.0% |
| ! | TTTTGCAAATGTGTGGCGAT+AGG | + | 24166:5379-5398 | MS.gene41606:intergenic | 40.0% |
| !! | ACCTAATTGGTTTGTCAGGA+TGG | - | 24166:3018-3037 | MS.gene41606:intron | 40.0% |
| !! | AGATGGTTGGTTTGCATTTG+GGG | - | 24166:2636-2655 | MS.gene41606:CDS | 40.0% |
| !! | ATTTTCGGGCGTCAGAAATT+GGG | - | 24166:3365-3384 | MS.gene41606:intron | 40.0% |
| !! | CAAACTTTTGGAAGCGATCT+CGG | + | 24166:5744-5763 | MS.gene41606:intergenic | 40.0% |
| !! | CAGATGGTTGGTTTGCATTT+GGG | - | 24166:2635-2654 | MS.gene41606:CDS | 40.0% |
| !! | CAGTTCTGCATTGTTGATTC+TGG | - | 24166:4846-4865 | MS.gene41606:CDS | 40.0% |
| !! | CCTAATTGGTTTGTCAGGAT+GGG | - | 24166:3019-3038 | MS.gene41606:intron | 40.0% |
| !! | TATTTTCGGGCGTCAGAAAT+TGG | - | 24166:3364-3383 | MS.gene41606:intron | 40.0% |
| !!! | GATAGCTAGCTTTTAAGGGA+GGG | + | 24166:4389-4408 | MS.gene41606:intergenic | 40.0% |
| !!! | TGATAGCTAGCTTTTAAGGG+AGG | + | 24166:4390-4409 | MS.gene41606:intergenic | 40.0% |
| ACTCGATGTTTCCAGATGGT+TGG | - | 24166:2623-2642 | MS.gene41606:CDS | 45.0% | |
| AGAACTTTGCAGGGTGTACA+TGG | - | 24166:5777-5796 | MS.gene41606:intron | 45.0% | |
| AGAGACAATAAAGGTGGGGT+TGG | - | 24166:4534-4553 | MS.gene41606:intron | 45.0% | |
| ATTCCAAGCTTCCCCATTGT+CGG | + | 24166:3217-3236 | MS.gene41606:intergenic | 45.0% | |
| CAAGCCCCTTAAATACTCCA+TGG | - | 24166:4422-4441 | MS.gene41606:intron | 45.0% | |
| CACATCAAGTGGCAGTATCA+AGG | - | 24166:5807-5826 | MS.gene41606:intron | 45.0% | |
| CATAGAAGTTCAACAGGCAC+GGG | - | 24166:3143-3162 | MS.gene41606:intron | 45.0% | |
| CATCACTGCAAGGCTATGTT+TGG | - | 24166:4162-4181 | MS.gene41606:intron | 45.0% | |
| CCAAATGCAAACCAACCATC+TGG | + | 24166:2637-2656 | MS.gene41606:intergenic | 45.0% | |
| CCATAGAAGTTCAACAGGCA+CGG | - | 24166:3142-3161 | MS.gene41606:intron | 45.0% | |
| CCCATCCTGACAAACCAATT+AGG | + | 24166:3022-3041 | MS.gene41606:intergenic | 45.0% | |
| CTAGTGTGAACAACCAGTCT+AGG | - | 24166:5457-5476 | MS.gene41606:CDS | 45.0% | |
| GCATCCAATACTGCTCTATG+TGG | - | 24166:4446-4465 | MS.gene41606:intron | 45.0% | |
| GGATATGGACCTGAAATCTG+GGG | - | 24166:5187-5206 | MS.gene41606:intron | 45.0% | |
| GGCTGTGATACCAAGGTAAA+AGG | + | 24166:3582-3601 | MS.gene41606:intergenic | 45.0% | |
| GGTTCCGATTCAGTTTCTAC+AGG | + | 24166:3560-3579 | MS.gene41606:intergenic | 45.0% | |
| GTGGATATGGACCTGAAATC+TGG | - | 24166:5185-5204 | MS.gene41606:intron | 45.0% | |
| GTGGTACGTGCAAATTTACG+AGG | - | 24166:5117-5136 | MS.gene41606:intron | 45.0% | |
| GTTCTTCAAGTGCATCTCAG+CGG | + | 24166:5842-5861 | MS.gene41606:intergenic | 45.0% | |
| TTGACCTTAAGGGACATACC+TGG | + | 24166:5291-5310 | MS.gene41606:intergenic | 45.0% | |
| ! | CAAACATAGCCTTGCAGTGA+TGG | + | 24166:4164-4183 | MS.gene41606:intergenic | 45.0% |
| ! | CATGGAGTATTTAAGGGGCT+TGG | + | 24166:4424-4443 | MS.gene41606:intergenic | 45.0% |
| ! | CTTGATACTGCCACTTGATG+TGG | + | 24166:5809-5828 | MS.gene41606:intergenic | 45.0% |
| ! | GAATCGGAACCCTTTTACCT+TGG | - | 24166:3569-3588 | MS.gene41606:intron | 45.0% |
| ! | GCGTTCTAAATATCCAGTCC+TGG | - | 24166:4332-4351 | MS.gene41606:intron | 45.0% |
| ! | GGGATCGAACTTGCTTCAAA+AGG | + | 24166:5267-5286 | MS.gene41606:intergenic | 45.0% |
| !! | CACCACCTAATTGGTTTGTC+AGG | - | 24166:3014-3033 | MS.gene41606:intron | 45.0% |
| !! | CCAGATGGTTGGTTTGCATT+TGG | - | 24166:2634-2653 | MS.gene41606:CDS | 45.0% |
| !! | AAAAAAAACAAAAAAAAATT+TGG | - | 24166:3400-3419 | MS.gene41606:CDS | 5.0% |
| ACAGGCACGGGATGTTGAAA+AGG | - | 24166:3155-3174 | MS.gene41606:intron | 50.0% | |
| ACAGGTGAGGCTTTGCAGAA+AGG | + | 24166:3327-3346 | MS.gene41606:intergenic | 50.0% | |
| ACCTTAAGGGACATACCTGG+AGG | + | 24166:5288-5307 | MS.gene41606:intergenic | 50.0% | |
| ACGAAACAGCTGGCAACTCT+GGG | - | 24166:3996-4015 | MS.gene41606:intron | 50.0% | |
| CAACCAGTCTAGGCAGTTCA+CGG | - | 24166:5467-5486 | MS.gene41606:CDS | 50.0% | |
| CCGTGCCTGTTGAACTTCTA+TGG | + | 24166:3145-3164 | MS.gene41606:intergenic | 50.0% | |
| CCTTAAGGGACATACCTGGA+GGG | + | 24166:5287-5306 | MS.gene41606:intergenic | 50.0% | |
| CCTTGCAGTGATGGCATACA+AGG | + | 24166:4155-4174 | MS.gene41606:intergenic | 50.0% | |
| CCTTGTATGCCATCACTGCA+AGG | - | 24166:4152-4171 | MS.gene41606:intron | 50.0% | |
| CGACGTTGGCAATATCAGTC+AGG | - | 24166:4041-4060 | MS.gene41606:intron | 50.0% | |
| GATAAGCACCCAAGCACTTG+AGG | - | 24166:4361-4380 | MS.gene41606:intron | 50.0% | |
| GCTTATCACATGTCCAGGAC+TGG | + | 24166:4348-4367 | MS.gene41606:intergenic | 50.0% | |
| GGGCTTCAGAACACATCATG+AGG | + | 24166:5246-5265 | MS.gene41606:intergenic | 50.0% | |
| TAATGCTGCTGACGCAGTGA+CGG | - | 24166:2817-2836 | MS.gene41606:CDS | 50.0% | |
| TGGGTGCTTATCACATGTCC+AGG | + | 24166:4353-4372 | MS.gene41606:intergenic | 50.0% | |
| TGGTGTGTTGTAAGTGCCAC+AGG | - | 24166:5042-5061 | MS.gene41606:intron | 50.0% | |
| TGTGTTGTAAGTGCCACAGG+CGG | - | 24166:5045-5064 | MS.gene41606:intron | 50.0% | |
| TTCAGCTCGATCCCGACAAT+GGG | - | 24166:3202-3221 | MS.gene41606:intron | 50.0% | |
| TTCCAAGCTTCCCCATTGTC+GGG | + | 24166:3216-3235 | MS.gene41606:intergenic | 50.0% | |
| ! | ATTTGGGGCTGCTGCATTGA+AGG | - | 24166:2651-2670 | MS.gene41606:CDS | 50.0% |
| ! | GAGCAGTATTGGATGCTCCA+TGG | + | 24166:4442-4461 | MS.gene41606:intergenic | 50.0% |
| ! | TTATTGAGTTGCACCGCCTG+TGG | + | 24166:5061-5080 | MS.gene41606:intergenic | 50.0% |
| ACACCACCAGCGCATTGTGA+TGG | + | 24166:5028-5047 | MS.gene41606:intergenic | 55.0% | |
| ACTCCATCACAATGCGCTGG+TGG | - | 24166:5022-5041 | MS.gene41606:intron | 55.0% | |
| AGCTCACGGCTGTGATACCA+AGG | + | 24166:3589-3608 | MS.gene41606:intergenic | 55.0% | |
| ATCCCGACAATGGGGAAGCT+TGG | - | 24166:3211-3230 | MS.gene41606:intron | 55.0% | |
| CCCTCCAGGTATGTCCCTTA+AGG | - | 24166:5284-5303 | MS.gene41606:intron | 55.0% | |
| GAAGCAAGTTCGATCCCTCC+AGG | - | 24166:5270-5289 | MS.gene41606:intron | 55.0% | |
| GACGAAACAGCTGGCAACTC+TGG | - | 24166:3995-4014 | MS.gene41606:intron | 55.0% | |
| GGAAGCTGCTCAGATGGTGT+TGG | - | 24166:4698-4717 | MS.gene41606:intron | 55.0% | |
| GGAGGGTTCCTCAAGTGCTT+GGG | + | 24166:4372-4391 | MS.gene41606:intergenic | 55.0% | |
| GTTCAGCTCGATCCCGACAA+TGG | - | 24166:3201-3220 | MS.gene41606:intron | 55.0% | |
| TCACCGTGAACTGCCTAGAC+TGG | + | 24166:5473-5492 | MS.gene41606:intergenic | 55.0% | |
| TCAGCTCGATCCCGACAATG+GGG | - | 24166:3203-3222 | MS.gene41606:intron | 55.0% | |
| ! | ACCAGCGCATTGTGATGGAG+TGG | + | 24166:5023-5042 | MS.gene41606:intergenic | 55.0% |
| ! | CCAGCGCATTGTGATGGAGT+GGG | + | 24166:5022-5041 | MS.gene41606:intergenic | 55.0% |
| AGCCATGTCGCAGTCGACGT+TGG | - | 24166:4027-4046 | MS.gene41606:intron | 60.0% | |
| CCCACTCCATCACAATGCGC+TGG | - | 24166:5019-5038 | MS.gene41606:intron | 60.0% | |
| GGGAGGGTTCCTCAAGTGCT+TGG | + | 24166:4373-4392 | MS.gene41606:intergenic | 60.0% | |
| ! | GGCACTGGAAGCTGCTCAGA+TGG | - | 24166:4692-4711 | MS.gene41606:intron | 60.0% |
| ! | TGCCAACGTCGACTGCGACA+TGG | + | 24166:4032-4051 | MS.gene41606:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24166 | gene | 2603 | 6062 | 2603 | ID=MS.gene41606 |
| 24166 | mRNA | 2603 | 6062 | 2603 | ID=MS.gene41606.t1;Parent=MS.gene41606 |
| 24166 | exon | 5993 | 6062 | 5993 | ID=MS.gene41606.t1.exon1;Parent=MS.gene41606.t1 |
| 24166 | CDS | 5993 | 6062 | 5993 | ID=cds.MS.gene41606.t1;Parent=MS.gene41606.t1 |
| 24166 | exon | 5415 | 5506 | 5415 | ID=MS.gene41606.t1.exon2;Parent=MS.gene41606.t1 |
| 24166 | CDS | 5415 | 5506 | 5415 | ID=cds.MS.gene41606.t1;Parent=MS.gene41606.t1 |
| 24166 | exon | 4836 | 4898 | 4836 | ID=MS.gene41606.t1.exon3;Parent=MS.gene41606.t1 |
| 24166 | CDS | 4836 | 4898 | 4836 | ID=cds.MS.gene41606.t1;Parent=MS.gene41606.t1 |
| 24166 | exon | 4603 | 4669 | 4603 | ID=MS.gene41606.t1.exon4;Parent=MS.gene41606.t1 |
| 24166 | CDS | 4603 | 4669 | 4603 | ID=cds.MS.gene41606.t1;Parent=MS.gene41606.t1 |
| 24166 | exon | 3715 | 3972 | 3715 | ID=MS.gene41606.t1.exon5;Parent=MS.gene41606.t1 |
| 24166 | CDS | 3715 | 3972 | 3715 | ID=cds.MS.gene41606.t1;Parent=MS.gene41606.t1 |
| 24166 | exon | 3374 | 3496 | 3374 | ID=MS.gene41606.t1.exon6;Parent=MS.gene41606.t1 |
| 24166 | CDS | 3374 | 3496 | 3374 | ID=cds.MS.gene41606.t1;Parent=MS.gene41606.t1 |
| 24166 | exon | 2792 | 2944 | 2792 | ID=MS.gene41606.t1.exon7;Parent=MS.gene41606.t1 |
| 24166 | CDS | 2792 | 2944 | 2792 | ID=cds.MS.gene41606.t1;Parent=MS.gene41606.t1 |
| 24166 | exon | 2603 | 2698 | 2603 | ID=MS.gene41606.t1.exon8;Parent=MS.gene41606.t1 |
| 24166 | CDS | 2603 | 2698 | 2603 | ID=cds.MS.gene41606.t1;Parent=MS.gene41606.t1 |
| Gene Sequence |
| Protein sequence |
