Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50986.t1 | ACJ84827.1 | 99.5 | 221 | 1 | 0 | 1 | 221 | 1 | 221 | 1.00E-118 | 436 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50986.t1 | Q9CA59 | 75.6 | 225 | 51 | 3 | 1 | 221 | 1 | 225 | 1.1e-92 | 340.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50986.t1 | B7FJS4 | 99.5 | 221 | 1 | 0 | 1 | 221 | 1 | 221 | 7.4e-119 | 436.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene50986 | 0.854554 | 1.14E-61 | -1.69E-46 |
| MS.gene049666 | MS.gene50986 | 0.834292 | 3.26E-56 | -1.69E-46 |
| MS.gene049824 | MS.gene50986 | 0.895079 | 1.35E-75 | -1.69E-46 |
| MS.gene049825 | MS.gene50986 | 0.87008 | 1.91E-66 | -1.69E-46 |
| MS.gene049873 | MS.gene50986 | 0.859903 | 3.00E-63 | -1.69E-46 |
| MS.gene050303 | MS.gene50986 | 0.816162 | 6.38E-52 | -1.69E-46 |
| MS.gene050355 | MS.gene50986 | 0.800072 | 1.71E-48 | -1.69E-46 |
| MS.gene050427 | MS.gene50986 | 0.859146 | 5.06E-63 | -1.69E-46 |
| MS.gene05045 | MS.gene50986 | 0.801551 | 8.54E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene50986 | 0.817524 | 3.15E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene50986 | 0.814434 | 1.54E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene50986 | 0.804094 | 2.55E-49 | -1.69E-46 |
| MS.gene051008 | MS.gene50986 | 0.818667 | 1.74E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene50986 | 0.806211 | 9.18E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene50986 | 0.82406 | 9.90E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene50986 | 0.836244 | 1.05E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene50986 | 0.810695 | 1.01E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene50986 | 0.830723 | 2.50E-55 | -1.69E-46 |
| MS.gene053122 | MS.gene50986 | 0.816419 | 5.58E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene50986 | 0.885228 | 9.74E-72 | -1.69E-46 |
| MS.gene053230 | MS.gene50986 | 0.83714 | 6.20E-57 | -1.69E-46 |
| MS.gene05365 | MS.gene50986 | 0.801625 | 8.24E-49 | -1.69E-46 |
| MS.gene053995 | MS.gene50986 | 0.81555 | 8.73E-52 | -1.69E-46 |
| MS.gene053998 | MS.gene50986 | 0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene055309 | MS.gene50986 | 0.826924 | 2.08E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene50986 | 0.818622 | 1.78E-52 | -1.69E-46 |
| MS.gene055589 | MS.gene50986 | 0.807728 | 4.39E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene50986 | 0.84013 | 1.05E-57 | -1.69E-46 |
| MS.gene055808 | MS.gene50986 | 0.873428 | 1.48E-67 | -1.69E-46 |
| MS.gene056091 | MS.gene50986 | 0.854823 | 9.52E-62 | -1.69E-46 |
| MS.gene056403 | MS.gene50986 | 0.80748 | 4.95E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene50986 | 0.800992 | 1.11E-48 | -1.69E-46 |
| MS.gene057060 | MS.gene50986 | 0.809383 | 1.94E-50 | -1.69E-46 |
| MS.gene057314 | MS.gene50986 | 0.812974 | 3.24E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene50986 | 0.800445 | 1.44E-48 | -1.69E-46 |
| MS.gene058085 | MS.gene50986 | 0.801785 | 7.64E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene50986 | 0.807192 | 5.70E-50 | -1.69E-46 |
| MS.gene05953 | MS.gene50986 | 0.815533 | 8.80E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene50986 | 0.846865 | 1.66E-59 | -1.69E-46 |
| MS.gene059935 | MS.gene50986 | 0.84477 | 6.15E-59 | -1.69E-46 |
| MS.gene06001 | MS.gene50986 | 0.81156 | 6.59E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene50986 | 0.874172 | 8.31E-68 | -1.69E-46 |
| MS.gene060830 | MS.gene50986 | 0.81276 | 3.61E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50986.t1 | MTR_3g040400 | 99.548 | 221 | 1 | 0 | 1 | 221 | 1 | 221 | 1.92e-161 | 446 |
| MS.gene50986.t1 | MTR_4g108570 | 77.376 | 221 | 47 | 1 | 1 | 221 | 1 | 218 | 9.70e-126 | 356 |
| MS.gene50986.t1 | MTR_4g108570 | 77.376 | 221 | 47 | 1 | 1 | 221 | 1 | 218 | 2.07e-125 | 355 |
| MS.gene50986.t1 | MTR_4g115160 | 51.101 | 227 | 96 | 3 | 3 | 219 | 100 | 321 | 2.22e-75 | 231 |
| MS.gene50986.t1 | MTR_4g115160 | 51.101 | 227 | 96 | 3 | 3 | 219 | 100 | 321 | 4.34e-75 | 231 |
| MS.gene50986.t1 | MTR_4g115820 | 53.333 | 90 | 31 | 2 | 103 | 181 | 6 | 95 | 3.08e-24 | 94.0 |
| MS.gene50986.t1 | MTR_0240s0030 | 48.235 | 85 | 43 | 1 | 60 | 143 | 2 | 86 | 1.66e-23 | 90.5 |
| MS.gene50986.t1 | MTR_6g090475 | 38.806 | 134 | 69 | 2 | 88 | 209 | 23 | 155 | 2.18e-22 | 89.7 |
| MS.gene50986.t1 | MTR_2g099940 | 27.778 | 162 | 89 | 3 | 29 | 163 | 53 | 213 | 9.30e-15 | 72.4 |
| MS.gene50986.t1 | MTR_2g039680 | 29.375 | 160 | 87 | 3 | 29 | 163 | 55 | 213 | 4.78e-14 | 70.5 |
| MS.gene50986.t1 | MTR_2g039680 | 29.375 | 160 | 87 | 3 | 29 | 163 | 55 | 213 | 5.40e-14 | 70.5 |
| MS.gene50986.t1 | MTR_2g039700 | 28.571 | 161 | 81 | 4 | 29 | 163 | 65 | 217 | 1.72e-12 | 65.9 |
| MS.gene50986.t1 | MTR_2g039697 | 22.951 | 244 | 129 | 7 | 29 | 221 | 58 | 293 | 1.20e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50986.t1 | AT1G18800 | 73.333 | 225 | 52 | 3 | 1 | 221 | 1 | 221 | 2.94e-116 | 332 |
| MS.gene50986.t1 | AT1G74560 | 76.961 | 204 | 45 | 2 | 20 | 221 | 22 | 225 | 3.87e-113 | 324 |
| MS.gene50986.t1 | AT1G74560 | 77.436 | 195 | 42 | 2 | 20 | 212 | 22 | 216 | 4.04e-108 | 311 |
| MS.gene50986.t1 | AT2G19480 | 26.506 | 166 | 87 | 4 | 29 | 163 | 55 | 216 | 1.07e-12 | 66.6 |
| MS.gene50986.t1 | AT2G19480 | 26.506 | 166 | 87 | 4 | 29 | 163 | 55 | 216 | 1.10e-12 | 66.6 |
| MS.gene50986.t1 | AT2G19480 | 26.506 | 166 | 87 | 4 | 29 | 163 | 55 | 216 | 1.12e-12 | 66.6 |
| MS.gene50986.t1 | AT5G56950 | 25.000 | 176 | 97 | 4 | 19 | 163 | 45 | 216 | 2.51e-11 | 62.8 |
| MS.gene50986.t1 | AT3G13782 | 28.947 | 152 | 90 | 4 | 26 | 163 | 60 | 207 | 3.62e-11 | 62.0 |
| MS.gene50986.t1 | AT3G13782 | 28.947 | 152 | 90 | 4 | 26 | 163 | 60 | 207 | 3.62e-11 | 62.0 |
Find 47 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTCCATTCCCGATTTC+TGG | 0.148537 | 3.2:+28868030 | MS.gene50986:CDS |
| AAATGATCAAGGATGATTTA+TGG | 0.278723 | 3.2:+28870049 | MS.gene50986:CDS |
| TTGAAATAATTGAGCGGATT+CGG | 0.342504 | 3.2:-28870072 | None:intergenic |
| TCTCTCCATTGAAAAGTTGC+AGG | 0.343507 | 3.2:+28867265 | MS.gene50986:CDS |
| TTACCGCCACACCCATAAAA+TGG | 0.350698 | 3.2:+28869212 | MS.gene50986:CDS |
| TACCGCAGTTAGCCAGAAAT+CGG | 0.377960 | 3.2:-28868042 | None:intergenic |
| AGCGAGCTGCCTCTGATATC+AGG | 0.378291 | 3.2:+28869400 | MS.gene50986:CDS |
| TTCTCATGACTAACTCCATT+GGG | 0.391028 | 3.2:-28869366 | None:intergenic |
| CACCGAGCAGAAAGATGAAA+TGG | 0.393738 | 3.2:+28869860 | MS.gene50986:CDS |
| GAAGTTGAAAGTTTCTGAAA+AGG | 0.400020 | 3.2:+28867208 | MS.gene50986:CDS |
| GCTTTGTTGTTCCTTCTTCA+AGG | 0.405290 | 3.2:-28869189 | None:intergenic |
| GATCATAAAGATGTTAAATC+AGG | 0.415444 | 3.2:+28868963 | MS.gene50986:CDS |
| AAGTTGAAAGTTTCTGAAAA+GGG | 0.417210 | 3.2:+28867209 | MS.gene50986:CDS |
| TTTCAACTTCTTAGACTTGT+CGG | 0.425948 | 3.2:-28867195 | None:intergenic |
| ACCCATTTCATCTTTCTGCT+CGG | 0.435207 | 3.2:-28869862 | None:intergenic |
| TGAATCCTCAAAATAGGGAT+TGG | 0.446308 | 3.2:-28869143 | None:intergenic |
| CTTCTCATGACTAACTCCAT+TGG | 0.461543 | 3.2:-28869367 | None:intergenic |
| TTCAAGAGATCACCAAGAAC+AGG | 0.466713 | 3.2:-28868192 | None:intergenic |
| AGCAGAAGTACAATGAAGTA+AGG | 0.474420 | 3.2:+28867976 | MS.gene50986:CDS |
| ATGAATGCAGTTTCTTTACC+TGG | 0.476177 | 3.2:+28869829 | MS.gene50986:intron |
| GTACAATGAAGTAAGGAAAC+CGG | 0.504777 | 3.2:+28867983 | MS.gene50986:CDS |
| GAGTTAGTCATGAGAAGAAA+GGG | 0.511551 | 3.2:+28869373 | MS.gene50986:CDS |
| TAAGCATTTAATCTCTCTTG+AGG | 0.513660 | 3.2:+28868935 | MS.gene50986:CDS |
| TGTTGTTCCTTCTTCAAGGA+AGG | 0.519890 | 3.2:-28869185 | None:intergenic |
| GGAGTTAGTCATGAGAAGAA+AGG | 0.520004 | 3.2:+28869372 | MS.gene50986:CDS |
| AATTCAAGATGAAATTGAAA+AGG | 0.525515 | 3.2:+28867289 | MS.gene50986:CDS |
| CACACCCATAAAATGGAAAG+AGG | 0.533883 | 3.2:+28869219 | MS.gene50986:CDS |
| ACCGCAGTTAGCCAGAAATC+GGG | 0.534071 | 3.2:-28868041 | None:intergenic |
| CTGCTCGGTGTCACAAAACC+AGG | 0.534635 | 3.2:-28869847 | None:intergenic |
| ACCGAGCAGAAAGATGAAAT+GGG | 0.553075 | 3.2:+28869861 | MS.gene50986:CDS |
| CTTAGACTTGTCGGCCACCA+TGG | 0.561301 | 3.2:-28867186 | None:intergenic |
| GCATTTAATCTCTCTTGAGG+TGG | 0.569987 | 3.2:+28868938 | MS.gene50986:CDS |
| CTTGAATGAAGAAGATCAGA+AGG | 0.578793 | 3.2:+28868209 | MS.gene50986:CDS |
| AACATGAAGGGCATTCCCAA+TGG | 0.580353 | 3.2:+28869351 | MS.gene50986:intron |
| CATAAAATGGAAAGAGGGCA+AGG | 0.586031 | 3.2:+28869225 | MS.gene50986:CDS |
| GTAGATTGCTGAAATGATCA+AGG | 0.588612 | 3.2:+28870038 | MS.gene50986:intron |
| TAACACCAACCTGATATCAG+AGG | 0.617428 | 3.2:-28869409 | None:intergenic |
| TCATTGCGCTTGTCATACAC+CGG | 0.617462 | 3.2:-28868002 | None:intergenic |
| AGTTAGCCAGAAATCGGGAA+TGG | 0.630002 | 3.2:-28868036 | None:intergenic |
| ACACCCATAAAATGGAAAGA+GGG | 0.634604 | 3.2:+28869220 | MS.gene50986:CDS |
| TCCCGATTTCTGGCTAACTG+CGG | 0.657384 | 3.2:+28868040 | MS.gene50986:CDS |
| ACACTGTTGAAATAATTGAG+CGG | 0.669472 | 3.2:-28870078 | None:intergenic |
| ATGGTACCAGATCAATGAGG+AGG | 0.677499 | 3.2:+28867929 | MS.gene50986:intron |
| AGAGATCACCAAGAACAGGA+TGG | 0.685499 | 3.2:-28868188 | None:intergenic |
| GAAAACGCTGAAGAGATCGA+CGG | 0.693016 | 3.2:+28867233 | MS.gene50986:CDS |
| AATGGGTGACATTCATGATG+AGG | 0.701668 | 3.2:+28869878 | MS.gene50986:CDS |
| ATTATGGTACCAGATCAATG+AGG | 0.762579 | 3.2:+28867926 | MS.gene50986:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAGAAAAGAAAAAT+TGG | - | chr3.2:28867318-28867337 | None:intergenic | 10.0% |
| !! | TAAAATGTAATTAAATTTAG+TGG | + | chr3.2:28867413-28867432 | MS.gene50986:intron | 10.0% |
| !!! | GTAAATTTTATTTAAGTAAA+TGG | + | chr3.2:28867603-28867622 | MS.gene50986:intron | 10.0% |
| !! | AATTAATTATTTGTTCCATT+TGG | - | chr3.2:28869798-28869817 | None:intergenic | 15.0% |
| !! | AATTTAGTGGAATTAAATTA+TGG | + | chr3.2:28867426-28867445 | MS.gene50986:intron | 15.0% |
| !! | ATTTAGTGGAATTAAATTAT+GGG | + | chr3.2:28867427-28867446 | MS.gene50986:intron | 15.0% |
| !! | TCAAGATTAAAATCTTAAAT+TGG | - | chr3.2:28868821-28868840 | None:intergenic | 15.0% |
| !!! | GTTTCTTTATGTTTTAATTT+TGG | + | chr3.2:28868073-28868092 | MS.gene50986:intron | 15.0% |
| !!! | TTGTATTTTGCTTAAATTAA+AGG | + | chr3.2:28869074-28869093 | MS.gene50986:intron | 15.0% |
| !!! | TTTTAATTAGGTAAATTGTA+TGG | + | chr3.2:28867560-28867579 | MS.gene50986:intron | 15.0% |
| !! | AAAATAAAACTTCTGTATGT+TGG | - | chr3.2:28867516-28867535 | None:intergenic | 20.0% |
| !! | AAAATGAAAAAGAGAAAAAG+TGG | - | chr3.2:28869286-28869305 | None:intergenic | 20.0% |
| !! | AACATTATCTTTAAACATGA+AGG | + | chr3.2:28869338-28869357 | MS.gene50986:intron | 20.0% |
| !! | AATTCAAGATGAAATTGAAA+AGG | + | chr3.2:28867289-28867308 | MS.gene50986:CDS | 20.0% |
| !! | ACATTATCTTTAAACATGAA+GGG | + | chr3.2:28869339-28869358 | MS.gene50986:intron | 20.0% |
| !! | AGGAAATTATGGATATTTAT+AGG | + | chr3.2:28867827-28867846 | MS.gene50986:intron | 20.0% |
| !! | GGAAATTATGGATATTTATA+GGG | + | chr3.2:28867828-28867847 | MS.gene50986:intron | 20.0% |
| !! | TCAAACAATATTCTAAGTAA+TGG | - | chr3.2:28868382-28868401 | None:intergenic | 20.0% |
| !! | TTTAACAACACAATAACTAA+CGG | - | chr3.2:28868117-28868136 | None:intergenic | 20.0% |
| !! | TTTAGTGGAATTAAATTATG+GGG | + | chr3.2:28867428-28867447 | MS.gene50986:intron | 20.0% |
| !!! | AATATCCATAATTTCCTTTT+TGG | - | chr3.2:28867824-28867843 | None:intergenic | 20.0% |
| !!! | AATGCAATTTAATTTGATTC+TGG | + | chr3.2:28867901-28867920 | MS.gene50986:intron | 20.0% |
| !!! | TGATAAAGTTCACTTTTAAA+CGG | - | chr3.2:28868549-28868568 | None:intergenic | 20.0% |
| !!! | TGATTCATTATGAAGTATTT+TGG | + | chr3.2:28868622-28868641 | MS.gene50986:intron | 20.0% |
| !!! | TGCGATTTTTTTTTTTGTAT+AGG | + | chr3.2:28867798-28867817 | MS.gene50986:intron | 20.0% |
| !!! | TTCTTTTTCATATAAAGTTC+TGG | - | chr3.2:28868307-28868326 | None:intergenic | 20.0% |
| !!! | TTGTTGTTCATGTATAAATT+GGG | + | chr3.2:28869557-28869576 | MS.gene50986:intron | 20.0% |
| !!! | TTTTTTTTCATCTGCATTTT+TGG | + | chr3.2:28867748-28867767 | MS.gene50986:intron | 20.0% |
| ! | AAATCAAATGAGAAGAAAAG+TGG | - | chr3.2:28868687-28868706 | None:intergenic | 25.0% |
| ! | AAATGATCAAGGATGATTTA+TGG | + | chr3.2:28870049-28870068 | MS.gene50986:CDS | 25.0% |
| ! | ATGCAACAGAAAACAAATTA+AGG | - | chr3.2:28869986-28870005 | None:intergenic | 25.0% |
| ! | CAGAATTCAGATTAAGTAAT+AGG | - | chr3.2:28867855-28867874 | None:intergenic | 25.0% |
| ! | CTAACATATGAAACTAGTAA+AGG | - | chr3.2:28869532-28869551 | None:intergenic | 25.0% |
| ! | GATCATAAAGATGTTAAATC+AGG | + | chr3.2:28868963-28868982 | MS.gene50986:CDS | 25.0% |
| ! | TAAATTGAATTCTACAACAG+AGG | - | chr3.2:28867383-28867402 | None:intergenic | 25.0% |
| ! | TAACACTAAAAACGAAATGT+TGG | - | chr3.2:28867642-28867661 | None:intergenic | 25.0% |
| ! | TAATTTGATTCTGGTGATTA+TGG | + | chr3.2:28867910-28867929 | MS.gene50986:intron | 25.0% |
| ! | TACTTTAGTCACATATATGA+TGG | + | chr3.2:28868870-28868889 | MS.gene50986:intron | 25.0% |
| !! | AAGTTGAAAGTTTCTGAAAA+GGG | + | chr3.2:28867209-28867228 | MS.gene50986:CDS | 25.0% |
| !! | TTTTGGTAGGAAAATGTAAT+CGG | + | chr3.2:28867765-28867784 | MS.gene50986:intron | 25.0% |
| !!! | AAGTTTTGAATCCTCAAAAT+AGG | - | chr3.2:28869152-28869171 | None:intergenic | 25.0% |
| !!! | AGTTTTGAATCCTCAAAATA+GGG | - | chr3.2:28869151-28869170 | None:intergenic | 25.0% |
| !!! | CTTGTTGTTCATGTATAAAT+TGG | + | chr3.2:28869556-28869575 | MS.gene50986:intron | 25.0% |
| !!! | TTTGGTTTTGTTTTTATCGT+TGG | + | chr3.2:28868091-28868110 | MS.gene50986:intron | 25.0% |
| !!! | TTTTTTTGTATAGGCCAAAA+AGG | + | chr3.2:28867807-28867826 | MS.gene50986:intron | 25.0% |
| AAACTTAGGGTAACATTGTT+TGG | + | chr3.2:28867460-28867479 | MS.gene50986:intron | 30.0% | |
| AAATGAGAAGAAAAGTGGTT+GGG | - | chr3.2:28868682-28868701 | None:intergenic | 30.0% | |
| AAGTCCAAAATAGATACACA+TGG | - | chr3.2:28868576-28868595 | None:intergenic | 30.0% | |
| ACACTGTTGAAATAATTGAG+CGG | - | chr3.2:28870081-28870100 | None:intergenic | 30.0% | |
| ACGAAATGTTGGATATTCAT+AGG | - | chr3.2:28867631-28867650 | None:intergenic | 30.0% | |
| ACTAATGAATTATGCACTGA+AGG | - | chr3.2:28869023-28869042 | None:intergenic | 30.0% | |
| AGAGAAAAAGTGGATAGATA+AGG | - | chr3.2:28869276-28869295 | None:intergenic | 30.0% | |
| AGTCCAAAATAGATACACAT+GGG | - | chr3.2:28868575-28868594 | None:intergenic | 30.0% | |
| ATAGGCCAAAAAGGAAATTA+TGG | + | chr3.2:28867816-28867835 | MS.gene50986:intron | 30.0% | |
| ATCTTCTTGAAAATGCCAAA+TGG | + | chr3.2:28869780-28869799 | MS.gene50986:intron | 30.0% | |
| CATTTCAGCAATCTACAATT+TGG | - | chr3.2:28870034-28870053 | None:intergenic | 30.0% | |
| CTAATGAATTATGCACTGAA+GGG | - | chr3.2:28869022-28869041 | None:intergenic | 30.0% | |
| GAATAGCTATGGTAAAGTTA+TGG | - | chr3.2:28868262-28868281 | None:intergenic | 30.0% | |
| GTAAGATCATGATACACATA+GGG | - | chr3.2:28868501-28868520 | None:intergenic | 30.0% | |
| TAACCATACCATGTTTGTTT+GGG | - | chr3.2:28869624-28869643 | None:intergenic | 30.0% | |
| TAAGCATTTAATCTCTCTTG+AGG | + | chr3.2:28868935-28868954 | MS.gene50986:CDS | 30.0% | |
| TACTACATGACTAAAAGTTC+TGG | - | chr3.2:28867709-28867728 | None:intergenic | 30.0% | |
| TTAACCATACCATGTTTGTT+TGG | - | chr3.2:28869625-28869644 | None:intergenic | 30.0% | |
| TTTCAACTTCTTAGACTTGT+CGG | - | chr3.2:28867198-28867217 | None:intergenic | 30.0% | |
| ! | AATTTCCTGCAACTTTTCAA+TGG | - | chr3.2:28867273-28867292 | None:intergenic | 30.0% |
| ! | ATTCCCATGTGTATCTATTT+TGG | + | chr3.2:28868569-28868588 | MS.gene50986:intron | 30.0% |
| ! | GAAGTTGAAAGTTTCTGAAA+AGG | + | chr3.2:28867208-28867227 | MS.gene50986:CDS | 30.0% |
| ! | GTGTAATAACTTCTCGTTTT+TGG | + | chr3.2:28868343-28868362 | MS.gene50986:intron | 30.0% |
| ! | GTGTTTTGCAAATCTCAATT+AGG | + | chr3.2:28869041-28869060 | MS.gene50986:intron | 30.0% |
| ! | TCATGATTGGTGATATAGTT+TGG | + | chr3.2:28869715-28869734 | MS.gene50986:intron | 30.0% |
| ! | TTGAAATAATTGAGCGGATT+CGG | - | chr3.2:28870075-28870094 | None:intergenic | 30.0% |
| !! | TGGTGTTAAAAGTGTTTCTA+TGG | + | chr3.2:28869424-28869443 | MS.gene50986:intron | 30.0% |
| !!! | TTTTCATCTGCATTTTTGGT+AGG | + | chr3.2:28867752-28867771 | MS.gene50986:intron | 30.0% |
| ACACCCATAAAATGGAAAGA+GGG | + | chr3.2:28869220-28869239 | MS.gene50986:CDS | 35.0% | |
| ATGAATGCAGTTTCTTTACC+TGG | + | chr3.2:28869829-28869848 | MS.gene50986:intron | 35.0% | |
| ATGATGAATGAGCTCATGAT+TGG | + | chr3.2:28869702-28869721 | MS.gene50986:intron | 35.0% | |
| ATTATGGTACCAGATCAATG+AGG | + | chr3.2:28867926-28867945 | MS.gene50986:intron | 35.0% | |
| ATTTGTGTCCCAAACAAACA+TGG | + | chr3.2:28869613-28869632 | MS.gene50986:intron | 35.0% | |
| CAAATGAGAAGAAAAGTGGT+TGG | - | chr3.2:28868683-28868702 | None:intergenic | 35.0% | |
| CGTAAGATCATGATACACAT+AGG | - | chr3.2:28868502-28868521 | None:intergenic | 35.0% | |
| CTTGAATGAAGAAGATCAGA+AGG | + | chr3.2:28868209-28868228 | MS.gene50986:CDS | 35.0% | |
| GAATAGCACTTGAATAGCTA+TGG | - | chr3.2:28868273-28868292 | None:intergenic | 35.0% | |
| GAGTTAGTCATGAGAAGAAA+GGG | + | chr3.2:28869373-28869392 | MS.gene50986:CDS | 35.0% | |
| GTACAATGAAGTAAGGAAAC+CGG | + | chr3.2:28867983-28868002 | MS.gene50986:CDS | 35.0% | |
| GTAGATTGCTGAAATGATCA+AGG | + | chr3.2:28870038-28870057 | MS.gene50986:intron | 35.0% | |
| TACGTTCATACTGTGATCAT+TGG | - | chr3.2:28868654-28868673 | None:intergenic | 35.0% | |
| TGAATCCTCAAAATAGGGAT+TGG | - | chr3.2:28869146-28869165 | None:intergenic | 35.0% | |
| TGGAAGACATTGGAAAACAA+AGG | + | chr3.2:28869444-28869463 | MS.gene50986:intron | 35.0% | |
| TTCTCATGACTAACTCCATT+GGG | - | chr3.2:28869369-28869388 | None:intergenic | 35.0% | |
| ! | ACTTTTACCTTCCTTGAAGA+AGG | + | chr3.2:28869178-28869197 | MS.gene50986:CDS | 35.0% |
| ! | AGCAGAAGTACAATGAAGTA+AGG | + | chr3.2:28867976-28867995 | MS.gene50986:CDS | 35.0% |
| ! | AGTGTTTCTATGGAAGACAT+TGG | + | chr3.2:28869434-28869453 | MS.gene50986:intron | 35.0% |
| ! | TACATGACTAAAAGTTCTGG+CGG | - | chr3.2:28867706-28867725 | None:intergenic | 35.0% |
| ! | TGAATTTCCAGAGTTTTGCA+TGG | + | chr3.2:28869580-28869599 | MS.gene50986:intron | 35.0% |
| ! | TTGCCCTCTTTCCATTTTAT+GGG | - | chr3.2:28869226-28869245 | None:intergenic | 35.0% |
| !! | GGGGTTGATGTTTAAACTTA+GGG | + | chr3.2:28867447-28867466 | MS.gene50986:intron | 35.0% |
| !! | GTTTGGTTCACCCTAATTTT+GGG | + | chr3.2:28867477-28867496 | MS.gene50986:intron | 35.0% |
| !! | TGGGGTTGATGTTTAAACTT+AGG | + | chr3.2:28867446-28867465 | MS.gene50986:intron | 35.0% |
| !! | TGTTTGGTTCACCCTAATTT+TGG | + | chr3.2:28867476-28867495 | MS.gene50986:intron | 35.0% |
| AATGGGTGACATTCATGATG+AGG | + | chr3.2:28869878-28869897 | MS.gene50986:CDS | 40.0% | |
| ACCCATTTCATCTTTCTGCT+CGG | - | chr3.2:28869865-28869884 | None:intergenic | 40.0% | |
| ACCGAGCAGAAAGATGAAAT+GGG | + | chr3.2:28869861-28869880 | MS.gene50986:CDS | 40.0% | |
| ACTTCTGTATGTTGGATCCT+AGG | - | chr3.2:28867508-28867527 | None:intergenic | 40.0% | |
| CACACCCATAAAATGGAAAG+AGG | + | chr3.2:28869219-28869238 | MS.gene50986:CDS | 40.0% | |
| CATAAAATGGAAAGAGGGCA+AGG | + | chr3.2:28869225-28869244 | MS.gene50986:CDS | 40.0% | |
| CTAGGGATCACCCAAAATTA+GGG | - | chr3.2:28867490-28867509 | None:intergenic | 40.0% | |
| CTTCTCATGACTAACTCCAT+TGG | - | chr3.2:28869370-28869389 | None:intergenic | 40.0% | |
| CTTCTGTATGTTGGATCCTA+GGG | - | chr3.2:28867507-28867526 | None:intergenic | 40.0% | |
| GCATTTAATCTCTCTTGAGG+TGG | + | chr3.2:28868938-28868957 | MS.gene50986:CDS | 40.0% | |
| GGAGTTAGTCATGAGAAGAA+AGG | + | chr3.2:28869372-28869391 | MS.gene50986:CDS | 40.0% | |
| TAACACCAACCTGATATCAG+AGG | - | chr3.2:28869412-28869431 | None:intergenic | 40.0% | |
| TCTCTCCATTGAAAAGTTGC+AGG | + | chr3.2:28867265-28867284 | MS.gene50986:CDS | 40.0% | |
| TGTCCCAAACAAACATGGTA+TGG | + | chr3.2:28869618-28869637 | MS.gene50986:intron | 40.0% | |
| TGTTGTTCCTTCTTCAAGGA+AGG | - | chr3.2:28869188-28869207 | None:intergenic | 40.0% | |
| TTCAAGAGATCACCAAGAAC+AGG | - | chr3.2:28868195-28868214 | None:intergenic | 40.0% | |
| ! | CTCTTTCCATTTTATGGGTG+TGG | - | chr3.2:28869221-28869240 | None:intergenic | 40.0% |
| ! | CTTGCCCTCTTTCCATTTTA+TGG | - | chr3.2:28869227-28869246 | None:intergenic | 40.0% |
| ! | GTTTGGGACACAAATAGAGT+TGG | - | chr3.2:28869608-28869627 | None:intergenic | 40.0% |
| ! | TTTCCATTTTATGGGTGTGG+CGG | - | chr3.2:28869218-28869237 | None:intergenic | 40.0% |
| !! | GCTTTGTTGTTCCTTCTTCA+AGG | - | chr3.2:28869192-28869211 | None:intergenic | 40.0% |
| !! | TTTTTGAGCCATCCTGTTCT+TGG | + | chr3.2:28868180-28868199 | MS.gene50986:CDS | 40.0% |
| AGAGATCACCAAGAACAGGA+TGG | - | chr3.2:28868191-28868210 | None:intergenic | 45.0% | |
| AGTTAGCCAGAAATCGGGAA+TGG | - | chr3.2:28868039-28868058 | None:intergenic | 45.0% | |
| ATGGTACCAGATCAATGAGG+AGG | + | chr3.2:28867929-28867948 | MS.gene50986:intron | 45.0% | |
| CACCGAGCAGAAAGATGAAA+TGG | + | chr3.2:28869860-28869879 | MS.gene50986:CDS | 45.0% | |
| CCAGTGTTATCTCACGAGTA+AGG | + | chr3.2:28869653-28869672 | MS.gene50986:intron | 45.0% | |
| CCTAGGGATCACCCAAAATT+AGG | - | chr3.2:28867491-28867510 | None:intergenic | 45.0% | |
| CCTTACTCGTGAGATAACAC+TGG | - | chr3.2:28869656-28869675 | None:intergenic | 45.0% | |
| GAAAACGCTGAAGAGATCGA+CGG | + | chr3.2:28867233-28867252 | MS.gene50986:CDS | 45.0% | |
| GTTGGAACCATGCAAAACTC+TGG | - | chr3.2:28869590-28869609 | None:intergenic | 45.0% | |
| TACCGCAGTTAGCCAGAAAT+CGG | - | chr3.2:28868045-28868064 | None:intergenic | 45.0% | |
| TCAAGTCCATTCCCGATTTC+TGG | + | chr3.2:28868030-28868049 | MS.gene50986:CDS | 45.0% | |
| TCATTGCGCTTGTCATACAC+CGG | - | chr3.2:28868005-28868024 | None:intergenic | 45.0% | |
| TTACCGCCACACCCATAAAA+TGG | + | chr3.2:28869212-28869231 | MS.gene50986:CDS | 45.0% | |
| ! | CGACTCCAATCCCTATTTTG+AGG | + | chr3.2:28869138-28869157 | MS.gene50986:CDS | 45.0% |
| !! | AACATGAAGGGCATTCCCAA+TGG | + | chr3.2:28869351-28869370 | MS.gene50986:intron | 45.0% |
| !! | CCTAATTTTGGGTGATCCCT+AGG | + | chr3.2:28867488-28867507 | MS.gene50986:intron | 45.0% |
| !! | TAAATATCTAAAAAAATAAA+TGG | - | chr3.2:28868917-28868936 | None:intergenic | 5.0% |
| !!! | AAAAAAATTAGTTTTTAATT+AGG | + | chr3.2:28867548-28867567 | MS.gene50986:intron | 5.0% |
| ACCGCAGTTAGCCAGAAATC+GGG | - | chr3.2:28868044-28868063 | None:intergenic | 50.0% | |
| AGCTGCCTCTGATATCAGGT+TGG | + | chr3.2:28869404-28869423 | MS.gene50986:intron | 50.0% | |
| !! | TCCCGATTTCTGGCTAACTG+CGG | + | chr3.2:28868040-28868059 | MS.gene50986:CDS | 50.0% |
| AGCGAGCTGCCTCTGATATC+AGG | + | chr3.2:28869400-28869419 | MS.gene50986:CDS | 55.0% | |
| ! | CGCTAGCCTCCTCATTGATC+TGG | - | chr3.2:28867938-28867957 | None:intergenic | 55.0% |
| !! | CTGCTCGGTGTCACAAAACC+AGG | - | chr3.2:28869850-28869869 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 28867188 | 28870107 | 28867188 | ID=MS.gene50986 |
| chr3.2 | mRNA | 28867188 | 28870107 | 28867188 | ID=MS.gene50986.t1;Parent=MS.gene50986 |
| chr3.2 | exon | 28867188 | 28867310 | 28867188 | ID=MS.gene50986.t1.exon1;Parent=MS.gene50986.t1 |
| chr3.2 | CDS | 28867188 | 28867310 | 28867188 | ID=cds.MS.gene50986.t1;Parent=MS.gene50986.t1 |
| chr3.2 | exon | 28867939 | 28868061 | 28867939 | ID=MS.gene50986.t1.exon2;Parent=MS.gene50986.t1 |
| chr3.2 | CDS | 28867939 | 28868061 | 28867939 | ID=cds.MS.gene50986.t1;Parent=MS.gene50986.t1 |
| chr3.2 | exon | 28868180 | 28868230 | 28868180 | ID=MS.gene50986.t1.exon3;Parent=MS.gene50986.t1 |
| chr3.2 | CDS | 28868180 | 28868230 | 28868180 | ID=cds.MS.gene50986.t1;Parent=MS.gene50986.t1 |
| chr3.2 | exon | 28868930 | 28869001 | 28868930 | ID=MS.gene50986.t1.exon4;Parent=MS.gene50986.t1 |
| chr3.2 | CDS | 28868930 | 28869001 | 28868930 | ID=cds.MS.gene50986.t1;Parent=MS.gene50986.t1 |
| chr3.2 | exon | 28869133 | 28869246 | 28869133 | ID=MS.gene50986.t1.exon5;Parent=MS.gene50986.t1 |
| chr3.2 | CDS | 28869133 | 28869246 | 28869133 | ID=cds.MS.gene50986.t1;Parent=MS.gene50986.t1 |
| chr3.2 | exon | 28869360 | 28869421 | 28869360 | ID=MS.gene50986.t1.exon6;Parent=MS.gene50986.t1 |
| chr3.2 | CDS | 28869360 | 28869421 | 28869360 | ID=cds.MS.gene50986.t1;Parent=MS.gene50986.t1 |
| chr3.2 | exon | 28869839 | 28869899 | 28869839 | ID=MS.gene50986.t1.exon7;Parent=MS.gene50986.t1 |
| chr3.2 | CDS | 28869839 | 28869899 | 28869839 | ID=cds.MS.gene50986.t1;Parent=MS.gene50986.t1 |
| chr3.2 | exon | 28870042 | 28870107 | 28870042 | ID=MS.gene50986.t1.exon8;Parent=MS.gene50986.t1 |
| chr3.2 | CDS | 28870042 | 28870107 | 28870042 | ID=cds.MS.gene50986.t1;Parent=MS.gene50986.t1 |
| Gene Sequence |
| Protein sequence |
