Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055898.t1 | XP_003590457.1 | 98.2 | 338 | 6 | 0 | 1 | 338 | 1 | 338 | 9.90E-198 | 699.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055898.t1 | Q96G74 | 27.2 | 151 | 103 | 2 | 171 | 314 | 188 | 338 | 5.8e-13 | 76.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055898.t1 | G7IA91 | 98.2 | 338 | 6 | 0 | 1 | 338 | 1 | 338 | 7.1e-198 | 699.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055898 | MS.gene34070 | PPI |
| MS.gene055898 | MS.gene99991 | PPI |
| MS.gene055898 | MS.gene005908 | PPI |
| MS.gene34071 | MS.gene055898 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055898.t1 | MTR_1g063900 | 98.225 | 338 | 6 | 0 | 1 | 338 | 1 | 338 | 0.0 | 696 |
| MS.gene055898.t1 | MTR_1g063900 | 97.786 | 271 | 6 | 0 | 1 | 271 | 1 | 271 | 0.0 | 555 |
| MS.gene055898.t1 | MTR_1g094650 | 50.847 | 354 | 143 | 6 | 8 | 334 | 10 | 359 | 8.56e-111 | 327 |
| MS.gene055898.t1 | MTR_3g081150 | 55.135 | 185 | 81 | 1 | 150 | 334 | 47 | 229 | 4.28e-76 | 233 |
| MS.gene055898.t1 | MTR_6g033065 | 52.105 | 190 | 86 | 2 | 147 | 334 | 44 | 230 | 5.21e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055898.t1 | AT5G03330 | 55.410 | 305 | 121 | 5 | 45 | 334 | 50 | 354 | 4.28e-109 | 322 |
| MS.gene055898.t1 | AT5G03330 | 55.410 | 305 | 121 | 5 | 45 | 334 | 50 | 354 | 4.28e-109 | 322 |
| MS.gene055898.t1 | AT5G04250 | 44.699 | 349 | 174 | 3 | 1 | 334 | 1 | 345 | 3.78e-99 | 296 |
| MS.gene055898.t1 | AT5G04250 | 44.699 | 349 | 174 | 3 | 1 | 334 | 1 | 345 | 3.78e-99 | 296 |
| MS.gene055898.t1 | AT5G03330 | 54.710 | 276 | 110 | 5 | 45 | 305 | 50 | 325 | 1.39e-89 | 272 |
| MS.gene055898.t1 | AT5G03330 | 54.710 | 276 | 110 | 5 | 45 | 305 | 50 | 325 | 1.39e-89 | 272 |
| MS.gene055898.t1 | AT3G02070 | 55.789 | 190 | 79 | 2 | 147 | 334 | 33 | 219 | 2.49e-78 | 239 |
| MS.gene055898.t1 | AT3G02070 | 55.789 | 190 | 79 | 2 | 147 | 334 | 33 | 219 | 2.49e-78 | 239 |
| MS.gene055898.t1 | AT3G22260 | 51.892 | 185 | 87 | 1 | 150 | 334 | 58 | 240 | 1.15e-65 | 207 |
| MS.gene055898.t1 | AT3G22260 | 50.526 | 190 | 87 | 2 | 150 | 334 | 58 | 245 | 3.98e-63 | 201 |
| MS.gene055898.t1 | AT3G22260 | 50.526 | 190 | 87 | 2 | 150 | 334 | 58 | 245 | 3.98e-63 | 201 |
| MS.gene055898.t1 | AT3G22260 | 50.526 | 190 | 87 | 2 | 150 | 334 | 58 | 245 | 3.98e-63 | 201 |
| MS.gene055898.t1 | AT3G22260 | 50.526 | 190 | 87 | 2 | 150 | 334 | 58 | 245 | 3.98e-63 | 201 |
| MS.gene055898.t1 | AT3G22260 | 50.526 | 190 | 87 | 2 | 150 | 334 | 58 | 245 | 3.98e-63 | 201 |
| MS.gene055898.t1 | AT2G39320 | 40.984 | 122 | 52 | 2 | 198 | 318 | 2 | 104 | 1.14e-22 | 94.0 |
Find 60 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCATTGGATGATGAAAT+TGG | 0.162385 | 1.3:-46095517 | MS.gene055898:CDS |
| CATGGAATATAATGAATATT+TGG | 0.203978 | 1.3:-46093756 | MS.gene055898:CDS |
| AAGAAAATCTTACCTCCTTT+TGG | 0.253179 | 1.3:+46093163 | None:intergenic |
| ACATATCCTTCATATATATC+TGG | 0.343275 | 1.3:+46093782 | None:intergenic |
| CGTTATAGTCCTGGATACTA+TGG | 0.356047 | 1.3:-46095985 | MS.gene055898:CDS |
| CATATGAAGGCTCAGAAGTA+TGG | 0.356593 | 1.3:+46095779 | None:intergenic |
| CATACCTCCTTGAGGATAGA+TGG | 0.380354 | 1.3:+46092745 | None:intergenic |
| CTTCTGAGCCTTCATATGAT+TGG | 0.400034 | 1.3:-46095774 | MS.gene055898:CDS |
| ATCAGATCATGAAAGGCTTC+TGG | 0.414468 | 1.3:-46094403 | MS.gene055898:CDS |
| TCTTCAAGCCGCGGCAGATT+CGG | 0.417780 | 1.3:-46093595 | MS.gene055898:intron |
| CAAATATTCATTATATTCCA+TGG | 0.419565 | 1.3:+46093757 | None:intergenic |
| ATTACAGTTATATGACTTTG+TGG | 0.422681 | 1.3:-46094161 | MS.gene055898:CDS |
| TGATCTCGTCATTCTCTACT+TGG | 0.423582 | 1.3:+46095884 | None:intergenic |
| GAAGCTAAACTTACAGGAAT+GGG | 0.430027 | 1.3:+46095472 | None:intergenic |
| TACTTTCAGAAGTATCATAA+TGG | 0.431762 | 1.3:+46095908 | None:intergenic |
| CTCACAAATTTGTGGTGATC+AGG | 0.446674 | 1.3:+46093937 | None:intergenic |
| ATCCATTGGATGATGAAATT+GGG | 0.458225 | 1.3:-46095516 | MS.gene055898:CDS |
| ACAAGGTGATGGTAATTGTC+AGG | 0.460550 | 1.3:-46094128 | MS.gene055898:intron |
| GACATAACTCAACATGATAC+TGG | 0.462268 | 1.3:-46095961 | MS.gene055898:CDS |
| GTCGATCCTCGTTATAGTCC+TGG | 0.463062 | 1.3:-46095994 | MS.gene055898:CDS |
| GCTTCTTGACAATTATCCAT+TGG | 0.473123 | 1.3:-46095530 | MS.gene055898:CDS |
| CCGATGATGAGCTATTGTTC+AGG | 0.473899 | 1.3:-46095742 | MS.gene055898:CDS |
| TGAAACTAGGAGTGGTGAAT+GGG | 0.478508 | 1.3:-46093631 | MS.gene055898:intron |
| GATGTTGCTTCATCAATAGA+TGG | 0.481748 | 1.3:+46094423 | None:intergenic |
| AGAAGCTAAACTTACAGGAA+TGG | 0.503330 | 1.3:+46095471 | None:intergenic |
| ATGAAACTAGGAGTGGTGAA+TGG | 0.525646 | 1.3:-46093632 | MS.gene055898:intron |
| TGAAGTAGAGGGAGTCTCAT+CGG | 0.525785 | 1.3:-46095554 | MS.gene055898:CDS |
| GCATTCAGATGTTGTTCAGT+GGG | 0.529867 | 1.3:-46096034 | MS.gene055898:CDS |
| AATATTTGGATAAGATGTCT+AGG | 0.530005 | 1.3:-46093742 | MS.gene055898:intron |
| TCTCATCCAGATATATATGA+AGG | 0.537154 | 1.3:-46093788 | MS.gene055898:CDS |
| AGTCAAGAAAGAAGAAAAGA+TGG | 0.538536 | 1.3:-46092484 | MS.gene055898:CDS |
| TTGTAGTCCTAGTGAAGTAG+AGG | 0.540675 | 1.3:-46095566 | MS.gene055898:CDS |
| TGAGCGTTCAAGTTATTCAC+AGG | 0.542997 | 1.3:-46095818 | MS.gene055898:CDS |
| AAATATTCATTATATTCCAT+GGG | 0.552117 | 1.3:+46093758 | None:intergenic |
| GAGACGAAAAGTTGTGAACC+AGG | 0.558171 | 1.3:-46093917 | MS.gene055898:intron |
| GTGTTATGCCAATCATATGA+AGG | 0.562233 | 1.3:+46095766 | None:intergenic |
| GTTATGTCACCATAGTATCC+AGG | 0.570278 | 1.3:+46095976 | None:intergenic |
| AAGCAACATCAGATCATGAA+AGG | 0.577443 | 1.3:-46094410 | MS.gene055898:CDS |
| GAGCATAAAGTACAAGGTGA+TGG | 0.591615 | 1.3:-46094139 | MS.gene055898:CDS |
| TCTTTCTCCAGTATGGTGTG+AGG | 0.597080 | 1.3:-46093249 | MS.gene055898:intron |
| CAAGAAAGAAGAAAAGATGG+TGG | 0.598589 | 1.3:-46092481 | MS.gene055898:CDS |
| TACAACTCCATCTATCCTCA+AGG | 0.603599 | 1.3:-46092752 | MS.gene055898:CDS |
| AGCATTCAGATGTTGTTCAG+TGG | 0.611379 | 1.3:-46096035 | MS.gene055898:CDS |
| CCTGAACAATAGCTCATCAT+CGG | 0.613174 | 1.3:+46095742 | None:intergenic |
| CTCCCAATTTCATCATCCAA+TGG | 0.616863 | 1.3:+46095514 | None:intergenic |
| GAGACTCCCTCTACTTCACT+AGG | 0.617455 | 1.3:+46095559 | None:intergenic |
| GGTCATGATTATGCACATGA+AGG | 0.618845 | 1.3:-46095619 | MS.gene055898:CDS |
| GAAACTAGGAGTGGTGAATG+GGG | 0.624351 | 1.3:-46093630 | MS.gene055898:intron |
| TTTGTGGAGCATAAAGTACA+AGG | 0.635922 | 1.3:-46094145 | MS.gene055898:CDS |
| ATATGAAGGATATGTTCCCA+TGG | 0.636647 | 1.3:-46093774 | MS.gene055898:CDS |
| TGTAGTCCTAGTGAAGTAGA+GGG | 0.639828 | 1.3:-46095565 | MS.gene055898:CDS |
| ACAACTGATCAGATAATGCA+CGG | 0.643277 | 1.3:+46093968 | None:intergenic |
| ATCATGAAAGGCTTCTGGAG+AGG | 0.644141 | 1.3:-46094398 | MS.gene055898:intron |
| AACACGTACCGAATCTGCCG+CGG | 0.644959 | 1.3:+46093587 | None:intergenic |
| ATGATGAGCTATTGTTCAGG+AGG | 0.650253 | 1.3:-46095739 | MS.gene055898:intron |
| CATTGGATGATGAAATTGGG+AGG | 0.656789 | 1.3:-46095513 | MS.gene055898:CDS |
| TCATGTGACTCTTCAAGCCG+CGG | 0.658571 | 1.3:-46093604 | MS.gene055898:CDS |
| CATTCAGATGTTGTTCAGTG+GGG | 0.679592 | 1.3:-46096033 | MS.gene055898:CDS |
| AACTCCATCTATCCTCAAGG+AGG | 0.722572 | 1.3:-46092749 | MS.gene055898:intron |
| TAGTATCCAGGACTATAACG+AGG | 0.765147 | 1.3:+46095988 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTCTTATAAATAATATT+TGG | - | chr1.3:46095443-46095462 | MS.gene055898:intron | 10.0% |
| !! | TTCATTGTTTATAAAAATTT+AGG | - | chr1.3:46094235-46094254 | MS.gene055898:intron | 10.0% |
| !! | AAATATTCATTATATTCCAT+GGG | + | chr1.3:46094753-46094772 | None:intergenic | 15.0% |
| !! | AAGAAAATAAAAGAATGTTA+TGG | + | chr1.3:46093643-46093662 | None:intergenic | 15.0% |
| !! | TTGTTTATAAAAATTTAGGT+TGG | - | chr1.3:46094239-46094258 | MS.gene055898:intron | 15.0% |
| !!! | ATACATTATCAGTTTTAATT+TGG | + | chr1.3:46095931-46095950 | None:intergenic | 15.0% |
| !!! | TCGTAAGAAATATTTTATAT+AGG | + | chr1.3:46094823-46094842 | None:intergenic | 15.0% |
| !!! | TTAATCTTTTTGCATAAATT+TGG | - | chr1.3:46092838-46092857 | MS.gene055898:intron | 15.0% |
| !!! | TTATAGTTTGTAAATGAAAA+AGG | - | chr1.3:46093850-46093869 | MS.gene055898:intron | 15.0% |
| !!! | TTTTACAAAAATTTCATACT+TGG | - | chr1.3:46095790-46095809 | MS.gene055898:CDS | 15.0% |
| !! | AAAGAGAAGAGAAAAATAAT+TGG | + | chr1.3:46095244-46095263 | None:intergenic | 20.0% |
| !! | AACCAAAAGTAAATAATATG+GGG | + | chr1.3:46094213-46094232 | None:intergenic | 20.0% |
| !! | AACTTTAATCAGTTTCATTT+CGG | - | chr1.3:46094455-46094474 | MS.gene055898:intron | 20.0% |
| !! | AAGCAAAGGTTTAAATTATT+TGG | - | chr1.3:46095854-46095873 | MS.gene055898:CDS | 20.0% |
| !! | AGAACCAAAAGTAAATAATA+TGG | + | chr1.3:46094215-46094234 | None:intergenic | 20.0% |
| !! | ATGAAAGAAAAAGTTGTTAT+TGG | + | chr1.3:46094851-46094870 | None:intergenic | 20.0% |
| !! | ATTAGAAAGGGATATAAATA+AGG | - | chr1.3:46093793-46093812 | MS.gene055898:CDS | 20.0% |
| !! | CAAATATTCATTATATTCCA+TGG | + | chr1.3:46094754-46094773 | None:intergenic | 20.0% |
| !! | CATGGAATATAATGAATATT+TGG | - | chr1.3:46094752-46094771 | MS.gene055898:intron | 20.0% |
| !! | GAACCAAAAGTAAATAATAT+GGG | + | chr1.3:46094214-46094233 | None:intergenic | 20.0% |
| !! | GAGAAATATAGTATATGATT+TGG | - | chr1.3:46095956-46095975 | MS.gene055898:CDS | 20.0% |
| !! | TACAATGAATAGAATAGTAA+TGG | + | chr1.3:46094990-46095009 | None:intergenic | 20.0% |
| !! | TGAATCAATAAATATGTACT+CGG | - | chr1.3:46093072-46093091 | MS.gene055898:intron | 20.0% |
| !! | TTAGAAAGGGATATAAATAA+GGG | - | chr1.3:46093794-46093813 | MS.gene055898:CDS | 20.0% |
| !! | TTGAAAAACCATTTCTATAT+TGG | + | chr1.3:46095557-46095576 | None:intergenic | 20.0% |
| !!! | AGTGATTTTCATAAGTTTTT+GGG | - | chr1.3:46095722-46095741 | MS.gene055898:intron | 20.0% |
| !!! | ATGTTCTATTTTTTTTGAAG+AGG | - | chr1.3:46093136-46093155 | MS.gene055898:intron | 20.0% |
| !!! | TATAGATTTGTTTGAACTTT+TGG | - | chr1.3:46095594-46095613 | MS.gene055898:CDS | 20.0% |
| !!! | TTTGTTATAATATTTGAGCT+TGG | - | chr1.3:46095177-46095196 | MS.gene055898:intron | 20.0% |
| !!! | TTTTTATTAGCTTTTAACCA+AGG | + | chr1.3:46094158-46094177 | None:intergenic | 20.0% |
| !!! | TTTTTGTACATTATTATCCT+GGG | - | chr1.3:46094662-46094681 | MS.gene055898:intron | 20.0% |
| ! | AAACTAACTGATCTAACTAA+TGG | + | chr1.3:46093763-46093782 | None:intergenic | 25.0% |
| ! | AAATAAGGGAAAATCAGATT+AGG | - | chr1.3:46093808-46093827 | MS.gene055898:intron | 25.0% |
| ! | AACATAGTGAAAAAGTTGTT+TGG | + | chr1.3:46093121-46093140 | None:intergenic | 25.0% |
| ! | AATATTTGGATAAGATGTCT+AGG | - | chr1.3:46094766-46094785 | MS.gene055898:intron | 25.0% |
| ! | AATTAGCTGAAAATGTAGTT+TGG | + | chr1.3:46093208-46093227 | None:intergenic | 25.0% |
| ! | ACATATCCTTCATATATATC+TGG | + | chr1.3:46094729-46094748 | None:intergenic | 25.0% |
| ! | ACCAAAAGTAAATAATATGG+GGG | + | chr1.3:46094212-46094231 | None:intergenic | 25.0% |
| ! | AGATTTCAAGAAACAATTTG+AGG | + | chr1.3:46095404-46095423 | None:intergenic | 25.0% |
| ! | ATTACAGTTATATGACTTTG+TGG | - | chr1.3:46094347-46094366 | MS.gene055898:intron | 25.0% |
| ! | GACACATAGAAATACTAAAA+CGG | + | chr1.3:46093696-46093715 | None:intergenic | 25.0% |
| ! | GGAAATATAGAAGATACTAA+GGG | - | chr1.3:46093402-46093421 | MS.gene055898:intron | 25.0% |
| ! | GGAGAAGGAAAATATAATTT+GGG | + | chr1.3:46095119-46095138 | None:intergenic | 25.0% |
| ! | TAATCTGTTTAACAATGTAG+TGG | + | chr1.3:46094331-46094350 | None:intergenic | 25.0% |
| ! | TGGAAATATAGAAGATACTA+AGG | - | chr1.3:46093401-46093420 | MS.gene055898:intron | 25.0% |
| ! | TGGAGAAGGAAAATATAATT+TGG | + | chr1.3:46095120-46095139 | None:intergenic | 25.0% |
| !! | ATTTGTGATGACTTCTTTTA+AGG | - | chr1.3:46095284-46095303 | MS.gene055898:intron | 25.0% |
| !! | CAGTGATTTTCATAAGTTTT+TGG | - | chr1.3:46095721-46095740 | MS.gene055898:intron | 25.0% |
| !! | CTTTAGCAAAATTTTTGTCT+GGG | - | chr1.3:46095035-46095054 | MS.gene055898:intron | 25.0% |
| !! | CTTTCATTTTGAATGAAACT+AGG | - | chr1.3:46094864-46094883 | MS.gene055898:intron | 25.0% |
| !! | CTTTTTGTACATTATTATCC+TGG | - | chr1.3:46094661-46094680 | MS.gene055898:intron | 25.0% |
| !! | GAGCTCATATTGATTAATTT+AGG | - | chr1.3:46095644-46095663 | MS.gene055898:intron | 25.0% |
| !! | TCTTTAGCAAAATTTTTGTC+TGG | - | chr1.3:46095034-46095053 | MS.gene055898:intron | 25.0% |
| !! | TTAAAGTTACTTTACACATG+TGG | + | chr1.3:46094443-46094462 | None:intergenic | 25.0% |
| !!! | TACTTTCAGAAGTATCATAA+TGG | + | chr1.3:46092603-46092622 | None:intergenic | 25.0% |
| !!! | TCATGACTTTTCCATTTTTT+AGG | - | chr1.3:46095622-46095641 | MS.gene055898:intron | 25.0% |
| AAAGGAGATCTATCATAAAG+TGG | - | chr1.3:46093868-46093887 | MS.gene055898:intron | 30.0% | |
| AACAATGTAGTGGCTTAATT+TGG | + | chr1.3:46094321-46094340 | None:intergenic | 30.0% | |
| AAGGAGATCTATCATAAAGT+GGG | - | chr1.3:46093869-46093888 | MS.gene055898:intron | 30.0% | |
| AGTCAAGAAAGAAGAAAAGA+TGG | - | chr1.3:46096024-46096043 | MS.gene055898:CDS | 30.0% | |
| ATAATTTGGGCACAATTGAA+AGG | + | chr1.3:46095106-46095125 | None:intergenic | 30.0% | |
| ATATGATAAATCCTCACTTC+AGG | + | chr1.3:46095381-46095400 | None:intergenic | 30.0% | |
| ATCCATTGGATGATGAAATT+GGG | - | chr1.3:46092992-46093011 | MS.gene055898:intron | 30.0% | |
| ATCTGAACCTTGAAAACATT+TGG | - | chr1.3:46095420-46095439 | MS.gene055898:intron | 30.0% | |
| ATTAGAGAGTTCATTTCTCT+TGG | - | chr1.3:46093987-46094006 | MS.gene055898:intron | 30.0% | |
| ATTGATTGAGAGTAGTAGAA+AGG | + | chr1.3:46093919-46093938 | None:intergenic | 30.0% | |
| CAATATGAGCTCCTAAAAAA+TGG | + | chr1.3:46095636-46095655 | None:intergenic | 30.0% | |
| CTTATTGGAAATCCATGAAA+TGG | + | chr1.3:46095520-46095539 | None:intergenic | 30.0% | |
| GGTACAAAAATTTGGAAAAG+TGG | + | chr1.3:46094419-46094438 | None:intergenic | 30.0% | |
| GGTACAAAATAGCAATGAAA+AGG | + | chr1.3:46093100-46093119 | None:intergenic | 30.0% | |
| GGTATTAGTCACAAGTAAAA+AGG | + | chr1.3:46095223-46095242 | None:intergenic | 30.0% | |
| TAGCACATTCCAAAAATCAA+TGG | - | chr1.3:46094055-46094074 | MS.gene055898:intron | 30.0% | |
| TATCCATTGGATGATGAAAT+TGG | - | chr1.3:46092991-46093010 | MS.gene055898:intron | 30.0% | |
| TCTAGAAGCCAATATAGAAA+TGG | - | chr1.3:46095546-46095565 | MS.gene055898:CDS | 30.0% | |
| TCTCATCCAGATATATATGA+AGG | - | chr1.3:46094720-46094739 | MS.gene055898:intron | 30.0% | |
| TTCATGGATTTCCAATAAGT+AGG | - | chr1.3:46095521-46095540 | MS.gene055898:CDS | 30.0% | |
| TTGTTAGAGAGGATTAGAAA+GGG | - | chr1.3:46093781-46093800 | MS.gene055898:CDS | 30.0% | |
| TTTGTTAGAGAGGATTAGAA+AGG | - | chr1.3:46093780-46093799 | MS.gene055898:CDS | 30.0% | |
| ! | AAATACTAAAACGGAGTGTT+TGG | + | chr1.3:46093687-46093706 | None:intergenic | 30.0% |
| ! | AAGAAAATCTTACCTCCTTT+TGG | + | chr1.3:46095348-46095367 | None:intergenic | 30.0% |
| ! | AATCAGAATTTTACATGCTC+AGG | - | chr1.3:46092868-46092887 | MS.gene055898:intron | 30.0% |
| ! | AGAATGTCCAAATGTTTTCA+AGG | + | chr1.3:46095430-46095449 | None:intergenic | 30.0% |
| ! | ATTTTGAATGAAACTAGGAG+TGG | - | chr1.3:46094869-46094888 | MS.gene055898:intron | 30.0% |
| ! | GTAAGATTTTCTTAGTAGTG+AGG | - | chr1.3:46095355-46095374 | MS.gene055898:intron | 30.0% |
| ! | TCATTTTCAATGAATTGTGC+AGG | + | chr1.3:46093547-46093566 | None:intergenic | 30.0% |
| ! | TCCCCCATATTATTTACTTT+TGG | - | chr1.3:46094208-46094227 | MS.gene055898:intron | 30.0% |
| ! | TCGTTATATGTCTTTTATGG+TGG | - | chr1.3:46093714-46093733 | MS.gene055898:intron | 30.0% |
| ! | TTTCAAAGCATTTATTCCTG+TGG | - | chr1.3:46093284-46093303 | MS.gene055898:intron | 30.0% |
| ! | TTTTCTTCATTCTTGCACAA+CGG | - | chr1.3:46093656-46093675 | MS.gene055898:intron | 30.0% |
| !! | GTGTCGTTATATGTCTTTTA+TGG | - | chr1.3:46093711-46093730 | MS.gene055898:intron | 30.0% |
| !!! | GGAATTTCTCCATTGATTTT+TGG | + | chr1.3:46094067-46094086 | None:intergenic | 30.0% |
| !!! | TTTTAATTTGGCCAAACACA+GGG | + | chr1.3:46095919-46095938 | None:intergenic | 30.0% |
| AAAAATACCATACCTCCTTG+AGG | + | chr1.3:46095774-46095793 | None:intergenic | 35.0% | |
| AAACAAGCTCAACAAAGCAA+AGG | - | chr1.3:46095840-46095859 | MS.gene055898:CDS | 35.0% | |
| AACCAAGAAGCTAAACTTAC+AGG | + | chr1.3:46093045-46093064 | None:intergenic | 35.0% | |
| AAGAAGCTGCATTCTTTCAT+TGG | + | chr1.3:46093330-46093349 | None:intergenic | 35.0% | |
| AAGCAACATCAGATCATGAA+AGG | - | chr1.3:46094098-46094117 | MS.gene055898:intron | 35.0% | |
| ACAACTGATCAGATAATGCA+CGG | + | chr1.3:46094543-46094562 | None:intergenic | 35.0% | |
| ACATCAAATTTCCCTGTGTT+TGG | - | chr1.3:46095905-46095924 | MS.gene055898:CDS | 35.0% | |
| ACATTTCATTATCAGAACCC+AGG | + | chr1.3:46094682-46094701 | None:intergenic | 35.0% | |
| AGAAGCTAAACTTACAGGAA+TGG | + | chr1.3:46093040-46093059 | None:intergenic | 35.0% | |
| ATATGAAGGATATGTTCCCA+TGG | - | chr1.3:46094734-46094753 | MS.gene055898:intron | 35.0% | |
| ATGTCACTGAATGAAACTGT+AGG | - | chr1.3:46095480-46095499 | MS.gene055898:intron | 35.0% | |
| CAAGAAAGAAGAAAAGATGG+TGG | - | chr1.3:46096027-46096046 | MS.gene055898:CDS | 35.0% | |
| GAAGCTAAACTTACAGGAAT+GGG | + | chr1.3:46093039-46093058 | None:intergenic | 35.0% | |
| GACATAACTCAACATGATAC+TGG | - | chr1.3:46092547-46092566 | MS.gene055898:intron | 35.0% | |
| GCTTCTAGATTCCTACTTAT+TGG | + | chr1.3:46095535-46095554 | None:intergenic | 35.0% | |
| GCTTCTTGACAATTATCCAT+TGG | - | chr1.3:46092978-46092997 | MS.gene055898:intron | 35.0% | |
| GGATTCTTCAAATGTTGCAA+TGG | - | chr1.3:46095149-46095168 | MS.gene055898:intron | 35.0% | |
| GTCATAAGCATATTGTTCCT+TGG | - | chr1.3:46094138-46094157 | MS.gene055898:CDS | 35.0% | |
| GTGTTATGCCAATCATATGA+AGG | + | chr1.3:46092745-46092764 | None:intergenic | 35.0% | |
| TAACTAATGGTCTAACCAAC+TGG | + | chr1.3:46093750-46093769 | None:intergenic | 35.0% | |
| TAAGGGAAAATCAGATTAGG+AGG | - | chr1.3:46093811-46093830 | MS.gene055898:intron | 35.0% | |
| TCATTGGTGTGAATGAAGAT+TGG | + | chr1.3:46093314-46093333 | None:intergenic | 35.0% | |
| TTGAAGAATCCAGCAGAAAA+TGG | + | chr1.3:46095140-46095159 | None:intergenic | 35.0% | |
| TTTGTGGAGCATAAAGTACA+AGG | - | chr1.3:46094363-46094382 | MS.gene055898:intron | 35.0% | |
| ! | AAGTTACTTTACACATGTGG+AGG | + | chr1.3:46094440-46094459 | None:intergenic | 35.0% |
| ! | CATGTGGAGGTACAAAAATT+TGG | + | chr1.3:46094427-46094446 | None:intergenic | 35.0% |
| ! | CTTTTCGTCTCACAAATTTG+TGG | + | chr1.3:46094582-46094601 | None:intergenic | 35.0% |
| ! | GATGTTGCTTCATCAATAGA+TGG | + | chr1.3:46094088-46094107 | None:intergenic | 35.0% |
| ! | TTCCTGTAAGTTTAGCTTCT+TGG | - | chr1.3:46093040-46093059 | MS.gene055898:intron | 35.0% |
| !! | GATCAGTTAGTTTGTTAGAG+AGG | - | chr1.3:46093770-46093789 | MS.gene055898:CDS | 35.0% |
| !! | TTTCATAAGTTTTTGGGCTG+AGG | - | chr1.3:46095728-46095747 | MS.gene055898:intron | 35.0% |
| !!! | AGTTTTGAGAAACCAAAAGG+AGG | - | chr1.3:46095333-46095352 | MS.gene055898:intron | 35.0% |
| !!! | CCTAGTTTTGAGAAACCAAA+AGG | - | chr1.3:46095330-46095349 | MS.gene055898:intron | 35.0% |
| !!! | CCTTTTGGTTTCTCAAAACT+AGG | + | chr1.3:46095333-46095352 | None:intergenic | 35.0% |
| !!! | GTTTTAATTTGGCCAAACAC+AGG | + | chr1.3:46095920-46095939 | None:intergenic | 35.0% |
| AACAAATGCCACCTTGTCTT+CGG | + | chr1.3:46093578-46093597 | None:intergenic | 40.0% | |
| AATCCAGCAGAAAATGGAGA+AGG | + | chr1.3:46095134-46095153 | None:intergenic | 40.0% | |
| AGCATTCAGATGTTGTTCAG+TGG | - | chr1.3:46092473-46092492 | MS.gene055898:CDS | 40.0% | |
| ATCAGATCATGAAAGGCTTC+TGG | - | chr1.3:46094105-46094124 | MS.gene055898:intron | 40.0% | |
| ATCATAAAGTGGGAACCCTT+GGG | - | chr1.3:46093879-46093898 | MS.gene055898:intron | 40.0% | |
| ATGAAACTAGGAGTGGTGAA+TGG | - | chr1.3:46094876-46094895 | MS.gene055898:intron | 40.0% | |
| ATGATGAGCTATTGTTCAGG+AGG | - | chr1.3:46092769-46092788 | MS.gene055898:CDS | 40.0% | |
| CAAATATCCTCACACCATAC+TGG | + | chr1.3:46095269-46095288 | None:intergenic | 40.0% | |
| CAGTATCTGCTTCCATTTCA+TGG | - | chr1.3:46095505-46095524 | MS.gene055898:CDS | 40.0% | |
| CATATGAAGGCTCAGAAGTA+TGG | + | chr1.3:46092732-46092751 | None:intergenic | 40.0% | |
| CATTCAGATGTTGTTCAGTG+GGG | - | chr1.3:46092475-46092494 | MS.gene055898:CDS | 40.0% | |
| CATTGGATGATGAAATTGGG+AGG | - | chr1.3:46092995-46093014 | MS.gene055898:intron | 40.0% | |
| CCTGAACAATAGCTCATCAT+CGG | + | chr1.3:46092769-46092788 | None:intergenic | 40.0% | |
| CGTTATAGTCCTGGATACTA+TGG | - | chr1.3:46092523-46092542 | MS.gene055898:intron | 40.0% | |
| CTCACAAATTTGTGGTGATC+AGG | + | chr1.3:46094574-46094593 | None:intergenic | 40.0% | |
| CTCCCAATTTCATCATCCAA+TGG | + | chr1.3:46092997-46093016 | None:intergenic | 40.0% | |
| CTTCTGAGCCTTCATATGAT+TGG | - | chr1.3:46092734-46092753 | MS.gene055898:intron | 40.0% | |
| CTTGTTTGAATCTTCCACTC+TGG | - | chr1.3:46093347-46093366 | MS.gene055898:intron | 40.0% | |
| GACTCGCTTGAAGTTATATC+TGG | + | chr1.3:46096008-46096027 | None:intergenic | 40.0% | |
| GAGCATAAAGTACAAGGTGA+TGG | - | chr1.3:46094369-46094388 | MS.gene055898:intron | 40.0% | |
| GCATTCAGATGTTGTTCAGT+GGG | - | chr1.3:46092474-46092493 | MS.gene055898:CDS | 40.0% | |
| GGTCATGATTATGCACATGA+AGG | - | chr1.3:46092889-46092908 | MS.gene055898:intron | 40.0% | |
| GTTATGTCACCATAGTATCC+AGG | + | chr1.3:46092535-46092554 | None:intergenic | 40.0% | |
| TACAACTCCATCTATCCTCA+AGG | - | chr1.3:46095756-46095775 | MS.gene055898:CDS | 40.0% | |
| TAGTATCCAGGACTATAACG+AGG | + | chr1.3:46092523-46092542 | None:intergenic | 40.0% | |
| TATCATAAAGTGGGAACCCT+TGG | - | chr1.3:46093878-46093897 | MS.gene055898:intron | 40.0% | |
| TCTCTTCTCTTTCTCCAGTA+TGG | - | chr1.3:46095252-46095271 | MS.gene055898:intron | 40.0% | |
| TGAAACTAGGAGTGGTGAAT+GGG | - | chr1.3:46094877-46094896 | MS.gene055898:intron | 40.0% | |
| TGATCTCGTCATTCTCTACT+TGG | + | chr1.3:46092627-46092646 | None:intergenic | 40.0% | |
| TGTAGTCCTAGTGAAGTAGA+GGG | - | chr1.3:46092943-46092962 | MS.gene055898:intron | 40.0% | |
| TTGTAGTCCTAGTGAAGTAG+AGG | - | chr1.3:46092942-46092961 | MS.gene055898:intron | 40.0% | |
| ! | ACAAGGTGATGGTAATTGTC+AGG | - | chr1.3:46094380-46094399 | MS.gene055898:intron | 40.0% |
| ! | TGAGCGTTCAAGTTATTCAC+AGG | - | chr1.3:46092690-46092709 | MS.gene055898:intron | 40.0% |
| ! | TTTCCTTCTCCATTTTCTGC+TGG | - | chr1.3:46095128-46095147 | MS.gene055898:intron | 40.0% |
| !! | AACCAGGTTTGTTGTTTAGC+GGG | - | chr1.3:46094607-46094626 | MS.gene055898:intron | 40.0% |
| !! | AATGAAGATTGGTTTGCCAC+AGG | + | chr1.3:46093303-46093322 | None:intergenic | 40.0% |
| !! | GAACCAGGTTTGTTGTTTAG+CGG | - | chr1.3:46094606-46094625 | MS.gene055898:intron | 40.0% |
| !! | TGGTACAGAGTGGTCATTTT+TGG | - | chr1.3:46093367-46093386 | MS.gene055898:intron | 40.0% |
| !!! | ACAGAGTGGTCATTTTTGGA+GGG | - | chr1.3:46093371-46093390 | MS.gene055898:intron | 40.0% |
| !!! | TACAGAGTGGTCATTTTTGG+AGG | - | chr1.3:46093370-46093389 | MS.gene055898:intron | 40.0% |
| AACCCGCTAAACAACAAACC+TGG | + | chr1.3:46094612-46094631 | None:intergenic | 45.0% | |
| AACTCCATCTATCCTCAAGG+AGG | - | chr1.3:46095759-46095778 | MS.gene055898:CDS | 45.0% | |
| CATACCTCCTTGAGGATAGA+TGG | + | chr1.3:46095766-46095785 | None:intergenic | 45.0% | |
| CATCTATCCTCAAGGAGGTA+TGG | - | chr1.3:46095764-46095783 | MS.gene055898:CDS | 45.0% | |
| CCGATGATGAGCTATTGTTC+AGG | - | chr1.3:46092766-46092785 | MS.gene055898:CDS | 45.0% | |
| GAAACTAGGAGTGGTGAATG+GGG | - | chr1.3:46094878-46094897 | MS.gene055898:intron | 45.0% | |
| GAGACGAAAAGTTGTGAACC+AGG | - | chr1.3:46094591-46094610 | MS.gene055898:intron | 45.0% | |
| GAGAGTAGTAGAAAGGTCAG+AGG | + | chr1.3:46093912-46093931 | None:intergenic | 45.0% | |
| GTGTGCACACACATACATCA+CGG | + | chr1.3:46094186-46094205 | None:intergenic | 45.0% | |
| TCATAAAGTGGGAACCCTTG+GGG | - | chr1.3:46093880-46093899 | MS.gene055898:intron | 45.0% | |
| TCTGGGTAAGTTTCGTTGCA+TGG | - | chr1.3:46095052-46095071 | MS.gene055898:intron | 45.0% | |
| TCTTTCTCCAGTATGGTGTG+AGG | - | chr1.3:46095259-46095278 | MS.gene055898:intron | 45.0% | |
| TGAAGTAGAGGGAGTCTCAT+CGG | - | chr1.3:46092954-46092973 | MS.gene055898:intron | 45.0% | |
| TGAGAAACATGCCGAAGACA+AGG | - | chr1.3:46093564-46093583 | MS.gene055898:intron | 45.0% | |
| ! | ATCATGAAAGGCTTCTGGAG+AGG | - | chr1.3:46094110-46094129 | MS.gene055898:intron | 45.0% |
| !! | GCTATTGTTCAGGAGGTATC+TGG | - | chr1.3:46092776-46092795 | MS.gene055898:CDS | 45.0% |
| !!! | AGAGTGGTCATTTTTGGAGG+GGG | - | chr1.3:46093373-46093392 | MS.gene055898:intron | 45.0% |
| !!! | CAGAGTGGTCATTTTTGGAG+GGG | - | chr1.3:46093372-46093391 | MS.gene055898:intron | 45.0% |
| ATGACCACTCTGTACCAGAG+TGG | + | chr1.3:46093364-46093383 | None:intergenic | 50.0% | |
| GAAACATGCCGAAGACAAGG+TGG | - | chr1.3:46093567-46093586 | MS.gene055898:intron | 50.0% | |
| GAGACTCCCTCTACTTCACT+AGG | + | chr1.3:46092952-46092971 | None:intergenic | 50.0% | |
| GGTGGTTCATTTCTGCCAGT+TGG | - | chr1.3:46093732-46093751 | MS.gene055898:intron | 50.0% | |
| GTCGATCCTCGTTATAGTCC+TGG | - | chr1.3:46092514-46092533 | MS.gene055898:intron | 50.0% | |
| TAGTAGTGAGGCCTGAAGTG+AGG | - | chr1.3:46095367-46095386 | MS.gene055898:intron | 50.0% | |
| TCATGTGACTCTTCAAGCCG+CGG | - | chr1.3:46094904-46094923 | MS.gene055898:intron | 50.0% | |
| TCTTCCACTCTGGTACAGAG+TGG | - | chr1.3:46093357-46093376 | MS.gene055898:intron | 50.0% | |
| AACACGTACCGAATCTGCCG+CGG | + | chr1.3:46094924-46094943 | None:intergenic | 55.0% | |
| TCTTCAAGCCGCGGCAGATT+CGG | - | chr1.3:46094913-46094932 | MS.gene055898:intron | 55.0% | |
| !! | CATTTTTGGAGGGGGTGGAG+TGG | - | chr1.3:46093381-46093400 | MS.gene055898:intron | 55.0% |
| !!! | GTGGTCATTTTTGGAGGGGG+TGG | - | chr1.3:46093376-46093395 | MS.gene055898:intron | 55.0% |
| GTCAGAGGTCTCTGCCCCAA+GGG | + | chr1.3:46093897-46093916 | None:intergenic | 60.0% | |
| GGTCAGAGGTCTCTGCCCCA+AGG | + | chr1.3:46093898-46093917 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 46092460 | 46096070 | 46092460 | ID=MS.gene055898 |
| chr1.3 | mRNA | 46092460 | 46096070 | 46092460 | ID=MS.gene055898.t1;Parent=MS.gene055898 |
| chr1.3 | exon | 46095740 | 46096070 | 46095740 | ID=MS.gene055898.t1.exon1;Parent=MS.gene055898.t1 |
| chr1.3 | CDS | 46095740 | 46096070 | 46095740 | ID=cds.MS.gene055898.t1;Parent=MS.gene055898.t1 |
| chr1.3 | exon | 46095486 | 46095640 | 46095486 | ID=MS.gene055898.t1.exon2;Parent=MS.gene055898.t1 |
| chr1.3 | CDS | 46095486 | 46095640 | 46095486 | ID=cds.MS.gene055898.t1;Parent=MS.gene055898.t1 |
| chr1.3 | exon | 46094399 | 46094472 | 46094399 | ID=MS.gene055898.t1.exon3;Parent=MS.gene055898.t1 |
| chr1.3 | CDS | 46094399 | 46094472 | 46094399 | ID=cds.MS.gene055898.t1;Parent=MS.gene055898.t1 |
| chr1.3 | exon | 46094129 | 46094183 | 46094129 | ID=MS.gene055898.t1.exon4;Parent=MS.gene055898.t1 |
| chr1.3 | CDS | 46094129 | 46094183 | 46094129 | ID=cds.MS.gene055898.t1;Parent=MS.gene055898.t1 |
| chr1.3 | exon | 46093918 | 46093992 | 46093918 | ID=MS.gene055898.t1.exon5;Parent=MS.gene055898.t1 |
| chr1.3 | CDS | 46093918 | 46093992 | 46093918 | ID=cds.MS.gene055898.t1;Parent=MS.gene055898.t1 |
| chr1.3 | exon | 46093743 | 46093816 | 46093743 | ID=MS.gene055898.t1.exon6;Parent=MS.gene055898.t1 |
| chr1.3 | CDS | 46093743 | 46093816 | 46093743 | ID=cds.MS.gene055898.t1;Parent=MS.gene055898.t1 |
| chr1.3 | exon | 46093596 | 46093644 | 46093596 | ID=MS.gene055898.t1.exon7;Parent=MS.gene055898.t1 |
| chr1.3 | CDS | 46093596 | 46093644 | 46093596 | ID=cds.MS.gene055898.t1;Parent=MS.gene055898.t1 |
| chr1.3 | exon | 46093176 | 46093260 | 46093176 | ID=MS.gene055898.t1.exon8;Parent=MS.gene055898.t1 |
| chr1.3 | CDS | 46093176 | 46093260 | 46093176 | ID=cds.MS.gene055898.t1;Parent=MS.gene055898.t1 |
| chr1.3 | exon | 46092750 | 46092806 | 46092750 | ID=MS.gene055898.t1.exon9;Parent=MS.gene055898.t1 |
| chr1.3 | CDS | 46092750 | 46092806 | 46092750 | ID=cds.MS.gene055898.t1;Parent=MS.gene055898.t1 |
| chr1.3 | exon | 46092460 | 46092521 | 46092460 | ID=MS.gene055898.t1.exon10;Parent=MS.gene055898.t1 |
| chr1.3 | CDS | 46092460 | 46092521 | 46092460 | ID=cds.MS.gene055898.t1;Parent=MS.gene055898.t1 |
| Gene Sequence |
| Protein sequence |
