Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056229.t1 | XP_003627849.1 | 96 | 1118 | 35 | 1 | 1 | 1108 | 1 | 1118 | 0.00E+00 | 2286.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056229.t1 | A5F5U6 | 39.8 | 1102 | 540 | 20 | 24 | 1093 | 13 | 1023 | 2.0e-224 | 780.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056229.t1 | G7LG20 | 96.0 | 1118 | 35 | 1 | 1 | 1108 | 1 | 1118 | 0.0e+00 | 2286.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056229 | MS.gene066439 | 0.815433 | 9.27E-52 | -1.69E-46 |
| MS.gene056229 | MS.gene28284 | 0.838845 | 2.26E-57 | -1.69E-46 |
| MS.gene056229 | MS.gene35252 | 0.806561 | 7.75E-50 | -1.69E-46 |
| MS.gene056229 | MS.gene45812 | 0.801151 | 1.03E-48 | -1.69E-46 |
| MS.gene056229 | MS.gene56840 | 0.809863 | 1.53E-50 | -1.69E-46 |
| MS.gene056229 | MS.gene90825 | 0.809079 | 2.26E-50 | -1.69E-46 |
| MS.gene056229 | MS.gene97346 | 0.818828 | 1.60E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056229.t1 | MTR_8g039160 | 95.975 | 1118 | 35 | 1 | 1 | 1108 | 1 | 1118 | 0.0 | 2236 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056229.t1 | AT3G54440 | 67.087 | 1109 | 348 | 3 | 8 | 1105 | 3 | 1105 | 0.0 | 1583 |
| MS.gene056229.t1 | AT3G54440 | 67.027 | 1110 | 348 | 4 | 8 | 1105 | 3 | 1106 | 0.0 | 1578 |
| MS.gene056229.t1 | AT3G54440 | 66.310 | 1122 | 348 | 4 | 8 | 1105 | 3 | 1118 | 0.0 | 1574 |
Find 273 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTTGCCTTTCCCACTTC+TGG | 0.164865 | 8.1:+65100522 | None:intergenic |
| TTCATCATCTTCATCTTCTT+TGG | 0.170568 | 8.1:-65104714 | MS.gene056229:CDS |
| GGAATATATGCTTCAAAATA+TGG | 0.197510 | 8.1:-65097015 | MS.gene056229:CDS |
| TAACTGCTCTGCGGCTTTAT+TGG | 0.204346 | 8.1:+65098289 | None:intergenic |
| TGCTTCTGGGGATGTCATTT+TGG | 0.205199 | 8.1:-65097295 | MS.gene056229:CDS |
| AGGGCATACACCCGTGTTTC+TGG | 0.206830 | 8.1:-65097557 | MS.gene056229:CDS |
| TTAAATCTTTGTCTGGATAT+TGG | 0.221104 | 8.1:-65103801 | MS.gene056229:CDS |
| ACATACACAATTTATGCTTC+TGG | 0.242009 | 8.1:-65097309 | MS.gene056229:CDS |
| TGGGCATATGGAGGTGAATT+TGG | 0.252083 | 8.1:-65098741 | MS.gene056229:CDS |
| ATGGGAATTTGCATATATAT+TGG | 0.252616 | 8.1:-65098942 | MS.gene056229:CDS |
| GACTCCAAGGAGGCTTTATA+TGG | 0.256554 | 8.1:-65098897 | MS.gene056229:CDS |
| ATAAAACCTTTGATTTCTTC+TGG | 0.257675 | 8.1:+65097346 | None:intergenic |
| AGGAGTACATGTTATGAATA+AGG | 0.259844 | 8.1:-65097577 | MS.gene056229:intron |
| CACAATTATGAGCTAGTTAA+AGG | 0.265051 | 8.1:-65096928 | MS.gene056229:CDS |
| ATGTGTTCACGACCAATATT+TGG | 0.269667 | 8.1:-65096444 | MS.gene056229:CDS |
| TGCTCCAAACAATAGTTATA+AGG | 0.285170 | 8.1:-65104675 | MS.gene056229:CDS |
| AACCAACAACTGCGCCTTTA+GGG | 0.288905 | 8.1:-65101152 | MS.gene056229:CDS |
| CACAAACAACTGCTGGTTAA+TGG | 0.289008 | 8.1:-65100588 | MS.gene056229:CDS |
| CAAACAATAGTTATAAGGTT+TGG | 0.297132 | 8.1:-65104670 | MS.gene056229:CDS |
| CATGTTCCTTATATTGTTCC+AGG | 0.306781 | 8.1:-65097096 | MS.gene056229:CDS |
| ACGAAGCAAAGTGGATTATC+TGG | 0.308876 | 8.1:-65103908 | MS.gene056229:CDS |
| CAACCAACAACTGCGCCTTT+AGG | 0.312369 | 8.1:-65101153 | MS.gene056229:CDS |
| AAAACCATGTGTCTCAATAT+TGG | 0.318441 | 8.1:+65099517 | None:intergenic |
| GAAGCTACACTCTATGATTC+TGG | 0.323404 | 8.1:-65101240 | MS.gene056229:CDS |
| TGGAAAGATGATGCTGTTAA+TGG | 0.325237 | 8.1:-65103868 | MS.gene056229:CDS |
| TCACTTAAATTCACCTTGAT+TGG | 0.328554 | 8.1:+65098507 | None:intergenic |
| ACCTTTGATTTCTTCTGGTT+TGG | 0.328842 | 8.1:+65097351 | None:intergenic |
| AAACAATAGTTATAAGGTTT+GGG | 0.335880 | 8.1:-65104669 | MS.gene056229:CDS |
| GATTCCCCTGGAACAATATA+AGG | 0.337392 | 8.1:+65097090 | None:intergenic |
| TATATTGTTCCAGGGGAATC+TGG | 0.339319 | 8.1:-65097087 | MS.gene056229:CDS |
| ATCATACCTTCCCACTCTTT+AGG | 0.342422 | 8.1:+65103153 | None:intergenic |
| CCGGTAACTCCAGCTACTTC+TGG | 0.342898 | 8.1:-65096383 | MS.gene056229:CDS |
| TGGGAATTTGCATATATATT+GGG | 0.343536 | 8.1:-65098941 | MS.gene056229:CDS |
| CAAACCTTATAACTATTGTT+TGG | 0.344950 | 8.1:+65104671 | None:intergenic |
| ATTTCATGATAGTGAGTTCC+AGG | 0.345918 | 8.1:-65103737 | MS.gene056229:CDS |
| ATCATAGAGTGTAGCTTCTA+TGG | 0.346306 | 8.1:+65101245 | None:intergenic |
| TTTCTCCATTTGATGAATGA+TGG | 0.348602 | 8.1:+65104641 | None:intergenic |
| CCAGAAGTAGCTGGAGTTAC+CGG | 0.348864 | 8.1:+65096383 | None:intergenic |
| ATCACACATGCATTATTTCC+TGG | 0.358955 | 8.1:-65099400 | MS.gene056229:CDS |
| TATGTCGTTGATTGGCAATC+AGG | 0.361563 | 8.1:-65098268 | MS.gene056229:CDS |
| GAAGCAATTGACAACACATT+TGG | 0.364283 | 8.1:-65098919 | MS.gene056229:CDS |
| AGACCACAAGCACATGGGTT+TGG | 0.374469 | 8.1:-65096489 | MS.gene056229:CDS |
| CAAGACCATTGGCGCATGTC+TGG | 0.374491 | 8.1:-65102092 | MS.gene056229:CDS |
| GCCCTATGTATATGCGAGTT+TGG | 0.375212 | 8.1:-65099157 | MS.gene056229:CDS |
| TCATACTCGCACAGTATTAG+AGG | 0.376241 | 8.1:+65099095 | None:intergenic |
| TTTAAGTGACGGAAAATTAG+AGG | 0.381031 | 8.1:-65098493 | MS.gene056229:intron |
| TGATTCCAGGCTATCAATAT+TGG | 0.382164 | 8.1:-65097714 | MS.gene056229:intron |
| TGTAACCTTCAACAGATTCA+TGG | 0.384506 | 8.1:+65104591 | None:intergenic |
| TAGCCGTTCAAGTGTTTAGA+TGG | 0.386493 | 8.1:-65102139 | MS.gene056229:CDS |
| TTCACGCCTCTTATTAAAAC+AGG | 0.387060 | 8.1:+65100561 | None:intergenic |
| CATACACAATTTATGCTTCT+GGG | 0.390353 | 8.1:-65097308 | MS.gene056229:CDS |
| TGGTTTCTCAATCTGCTGTT+TGG | 0.393218 | 8.1:-65103888 | MS.gene056229:CDS |
| GACCACAAGCACATGGGTTT+GGG | 0.394165 | 8.1:-65096488 | MS.gene056229:CDS |
| TATGAGCTATGTGATTTGTT+TGG | 0.395260 | 8.1:-65099560 | MS.gene056229:CDS |
| TCATCTTCATCTTCTTTGGT+TGG | 0.395485 | 8.1:-65104710 | MS.gene056229:CDS |
| GTGTAGGATCACTTAAATAT+TGG | 0.397599 | 8.1:-65103936 | MS.gene056229:intron |
| TGCGCAGCAGCATTTCTATC+TGG | 0.398061 | 8.1:+65097153 | None:intergenic |
| TTCTCCATTTGATGAATGAT+GGG | 0.400191 | 8.1:+65104642 | None:intergenic |
| CATTAACCAGCAGTTGTTTG+TGG | 0.400206 | 8.1:+65100589 | None:intergenic |
| AAAGCTTTGGTCAGCAGAAC+AGG | 0.400641 | 8.1:-65101091 | MS.gene056229:intron |
| GGAGTACATGTTATGAATAA+GGG | 0.405550 | 8.1:-65097576 | MS.gene056229:intron |
| TATATGGGATTGGGTTGATC+AGG | 0.407078 | 8.1:-65098881 | MS.gene056229:intron |
| GGAATCCTCTGATGGGAATC+CGG | 0.411642 | 8.1:-65101211 | MS.gene056229:CDS |
| CTTCCCACTCTTTAGGAAGA+TGG | 0.413677 | 8.1:+65103160 | None:intergenic |
| AAGGAGGCTTTATATGGGAT+TGG | 0.413887 | 8.1:-65098891 | MS.gene056229:CDS |
| CAGGTCCATGGTATTCTCTA+TGG | 0.414758 | 8.1:-65098249 | MS.gene056229:CDS |
| ATTGGACAGTTCCTTCGAAT+TGG | 0.415249 | 8.1:-65103293 | MS.gene056229:intron |
| GTGGTAGGGCAGATGTTAGA+TGG | 0.416056 | 8.1:-65097065 | MS.gene056229:CDS |
| AGGAGGCTTTATATGGGATT+GGG | 0.417518 | 8.1:-65098890 | MS.gene056229:CDS |
| CACTCTATGATTCTGGAAGC+TGG | 0.420632 | 8.1:-65101233 | MS.gene056229:CDS |
| AAATTTAGCAGGGACATTGC+TGG | 0.420937 | 8.1:+65103756 | None:intergenic |
| GTAACATTCAACACTAAAAC+AGG | 0.421090 | 8.1:-65097624 | MS.gene056229:intron |
| CATTGCCATGAATCTGTTGA+AGG | 0.421511 | 8.1:-65104596 | MS.gene056229:intron |
| TTCAAGGAAGAGATTCTTCT+CGG | 0.426876 | 8.1:-65099232 | MS.gene056229:CDS |
| TATGTTACATTTGTATATAT+AGG | 0.428619 | 8.1:+65103249 | None:intergenic |
| GTTAACTTACCATGTAAAAC+AGG | 0.430946 | 8.1:+65098654 | None:intergenic |
| AACTGCAATCACCAAAGCTT+TGG | 0.432238 | 8.1:-65101104 | MS.gene056229:CDS |
| TGGATAAACGGCCATCCTAT+AGG | 0.432553 | 8.1:-65102679 | MS.gene056229:CDS |
| GAACGGCTAGAACATTCTTC+AGG | 0.433961 | 8.1:+65102153 | None:intergenic |
| AAAGGAGGAAGATCAGCATT+TGG | 0.434408 | 8.1:+65097258 | None:intergenic |
| ATTAACCAGCAGTTGTTTGT+GGG | 0.439762 | 8.1:+65100590 | None:intergenic |
| TCCTCCTTTATCATTGTCAA+TGG | 0.442513 | 8.1:+65097527 | None:intergenic |
| CCCTATGTATATGCGAGTTT+GGG | 0.444022 | 8.1:-65099156 | MS.gene056229:CDS |
| AAATGCGGTTAAAGTGTTAG+TGG | 0.445852 | 8.1:-65097412 | MS.gene056229:CDS |
| TGCATTATTTCCTGGTCTCT+AGG | 0.446467 | 8.1:-65099392 | MS.gene056229:CDS |
| TGGTCTCTAGGGAATGAATC+TGG | 0.448268 | 8.1:-65099380 | MS.gene056229:CDS |
| AATGCATCAGGTTGGATTCA+AGG | 0.448460 | 8.1:-65099248 | MS.gene056229:intron |
| AACCCTAAAGGCGCAGTTGT+TGG | 0.450432 | 8.1:+65101150 | None:intergenic |
| ACAACTAATGTATAGAGGTT+TGG | 0.453042 | 8.1:+65100687 | None:intergenic |
| AGAGCAGTTATGTCGTTGAT+TGG | 0.453299 | 8.1:-65098276 | MS.gene056229:CDS |
| CTAGGGAATGAATCTGGATT+CGG | 0.454163 | 8.1:-65099374 | MS.gene056229:CDS |
| GCTTCCATTGACAATGATAA+AGG | 0.455900 | 8.1:-65097531 | MS.gene056229:CDS |
| CAGCTTCAACCCAGCGTGTA+GGG | 0.458293 | 8.1:+65098173 | None:intergenic |
| GCACTGGAGGAACCAAATAT+TGG | 0.459462 | 8.1:+65096432 | None:intergenic |
| CCAGACAAAGATTTAACAAA+AGG | 0.460237 | 8.1:+65103808 | None:intergenic |
| AAATGCTGCTGCGCAGGTTG+CGG | 0.461757 | 8.1:-65097145 | MS.gene056229:CDS |
| TCTTCCTCCTTTGCCACGCG+TGG | 0.462670 | 8.1:-65097247 | MS.gene056229:CDS |
| TGTTCTGCTGACCAAAGCTT+TGG | 0.462738 | 8.1:+65101093 | None:intergenic |
| TTGTCCAAGTGGAAAGCTGC+TGG | 0.463387 | 8.1:-65097489 | MS.gene056229:CDS |
| GTCGTCCTCAAAGATAAATC+TGG | 0.463737 | 8.1:-65100666 | MS.gene056229:CDS |
| CGTGGGAATCGAGATGAACT+TGG | 0.463775 | 8.1:-65097229 | MS.gene056229:CDS |
| TTAAATTCACCTTGATTGGT+TGG | 0.466615 | 8.1:+65098511 | None:intergenic |
| AAAGGAGGATCAAGGGGAAA+TGG | 0.466988 | 8.1:+65103225 | None:intergenic |
| ACGTGTTTCTGTAGGATCAT+TGG | 0.467539 | 8.1:+65099118 | None:intergenic |
| AAGACCCATCATTCATCAAA+TGG | 0.468785 | 8.1:-65104646 | MS.gene056229:CDS |
| GGAACAGTGTCTCTCTTAGA+TGG | 0.470496 | 8.1:+65098118 | None:intergenic |
| TCACTATCATGAAATTTAGC+AGG | 0.471366 | 8.1:+65103745 | None:intergenic |
| GAGTCATACCTGTATCCTAT+AGG | 0.475275 | 8.1:+65102664 | None:intergenic |
| AAGTACTCCATTCTGAATCC+TGG | 0.475597 | 8.1:+65103719 | None:intergenic |
| AGCTGGTATATTTCAGCAGA+TGG | 0.477055 | 8.1:-65098346 | MS.gene056229:CDS |
| CGGAGATAACCTAACAGAAA+AGG | 0.479851 | 8.1:+65096403 | None:intergenic |
| TGACAGGTATTCACATGCAA+TGG | 0.482914 | 8.1:-65098974 | MS.gene056229:intron |
| GCATTATTTCCTGGTCTCTA+GGG | 0.483687 | 8.1:-65099391 | MS.gene056229:CDS |
| AATTTAGCAGGGACATTGCT+GGG | 0.486146 | 8.1:+65103757 | None:intergenic |
| CTGCTCTGCGGCTTTATTGG+AGG | 0.486334 | 8.1:+65098292 | None:intergenic |
| CTATCTGGATAACACTCAAA+TGG | 0.487845 | 8.1:+65097168 | None:intergenic |
| GACAGGTATTCACATGCAAT+GGG | 0.488489 | 8.1:-65098973 | MS.gene056229:intron |
| GGTACAAAGCAATGGGCATA+TGG | 0.489144 | 8.1:-65098753 | MS.gene056229:CDS |
| TTTGTTTGAACGGTCTCGTA+TGG | 0.490798 | 8.1:-65098695 | MS.gene056229:CDS |
| TCTCGGGTTATACATTATGA+AGG | 0.491601 | 8.1:-65099215 | MS.gene056229:CDS |
| CGCCCAAACCCATGTGCTTG+TGG | 0.491929 | 8.1:+65096486 | None:intergenic |
| GTTCCTACTGAAAATCCAAC+TGG | 0.493013 | 8.1:-65103201 | MS.gene056229:CDS |
| TTGGATCAAGTAAGTTGGTA+TGG | 0.496315 | 8.1:-65097198 | MS.gene056229:CDS |
| ACAGGATGAGCAGTTCGATC+AGG | 0.498959 | 8.1:+65098672 | None:intergenic |
| GCCGTTTATCCACGCACAAA+AGG | 0.507068 | 8.1:+65102690 | None:intergenic |
| AGCAGACGGTACAAAGCAAT+GGG | 0.508687 | 8.1:-65098760 | MS.gene056229:CDS |
| ACATTAGATGAAAGAAGATC+CGG | 0.509912 | 8.1:+65101192 | None:intergenic |
| AACAGCTCTCAGCAATAAAG+TGG | 0.510245 | 8.1:+65097454 | None:intergenic |
| TCAGCAGATGGATACAAACT+TGG | 0.510513 | 8.1:-65098334 | MS.gene056229:CDS |
| CTGGAGAGTTGGAGTTCAGC+TGG | 0.512743 | 8.1:-65098363 | MS.gene056229:CDS |
| ACGGCCATCCTATAGGATAC+AGG | 0.513529 | 8.1:-65102672 | MS.gene056229:intron |
| AATCCCATATAAAGCCTCCT+TGG | 0.513637 | 8.1:+65098893 | None:intergenic |
| AACCTAACAGAAAAGGAGTA+AGG | 0.513934 | 8.1:+65096410 | None:intergenic |
| CTTGCACTCATTTGCATGGG+TGG | 0.515880 | 8.1:+65096985 | None:intergenic |
| CACGTCCAGATTTATCTTTG+AGG | 0.516054 | 8.1:+65100661 | None:intergenic |
| ACCTTGAGGATCAAGACCAT+TGG | 0.516261 | 8.1:-65102103 | MS.gene056229:CDS |
| AAGAGAACCCTCCTTGCCCT+TGG | 0.516769 | 8.1:+65097374 | None:intergenic |
| ACAGAAAAGGAGTAAGGCAC+TGG | 0.517353 | 8.1:+65096416 | None:intergenic |
| AATTCCAGCAGCTTTCCACT+TGG | 0.519444 | 8.1:+65097485 | None:intergenic |
| ACTCCAAGGAGGCTTTATAT+GGG | 0.520376 | 8.1:-65098896 | MS.gene056229:CDS |
| GGAAGCTGGGAATCCTCTGA+TGG | 0.522227 | 8.1:-65101219 | MS.gene056229:CDS |
| TGTTCTGTACAGAGTGCGAC+AGG | 0.522462 | 8.1:-65097435 | MS.gene056229:CDS |
| AGATAGAAATGCTGCTGCGC+AGG | 0.523174 | 8.1:-65097151 | MS.gene056229:CDS |
| AATCATTGGATCAAGTAAGT+TGG | 0.523512 | 8.1:-65097203 | MS.gene056229:CDS |
| TCGATTCCCACGCGTGGCAA+AGG | 0.525991 | 8.1:+65097240 | None:intergenic |
| TCCAGGGGAATCTGGTGGTA+GGG | 0.528005 | 8.1:-65097079 | MS.gene056229:CDS |
| GACTTTGATTGTATCTCCAA+CGG | 0.528055 | 8.1:+65097668 | None:intergenic |
| CAGGCTATCAATATTGGTAG+TGG | 0.528455 | 8.1:-65097708 | MS.gene056229:CDS |
| TAGGAACGAAAGGAGGATCA+AGG | 0.528970 | 8.1:+65103217 | None:intergenic |
| GGATGCCAGACATGCGCCAA+TGG | 0.530052 | 8.1:+65102087 | None:intergenic |
| TCCTACTCTGGAACCAATGT+GGG | 0.531213 | 8.1:-65099471 | MS.gene056229:CDS |
| GTTTGGGCGGAGATGATAGT+TGG | 0.531663 | 8.1:-65096472 | MS.gene056229:CDS |
| CTAAAGGCGCAGTTGTTGGT+TGG | 0.531853 | 8.1:+65101154 | None:intergenic |
| ACATCTCAAGCATCCTACTC+TGG | 0.532299 | 8.1:-65099483 | MS.gene056229:CDS |
| ATGTCATGACCAGAAGTAGC+TGG | 0.533090 | 8.1:+65096374 | None:intergenic |
| CCATGGTGTTACCAAGGGCA+AGG | 0.533252 | 8.1:-65097385 | MS.gene056229:CDS |
| CCTTCGAATTGGCAGCTGCA+TGG | 0.533685 | 8.1:-65103282 | MS.gene056229:CDS |
| GTTCTTATACCAACCAATCA+AGG | 0.533846 | 8.1:-65098520 | MS.gene056229:CDS |
| GGACGACAACTAATGTATAG+AGG | 0.534254 | 8.1:+65100682 | None:intergenic |
| TCAGTGACTTCAAACTCTGC+AGG | 0.534335 | 8.1:+65102200 | None:intergenic |
| TCCAACTGGCTGCTACAGAA+TGG | 0.535017 | 8.1:-65103187 | MS.gene056229:CDS |
| ACTCTATGATTCTGGAAGCT+GGG | 0.535525 | 8.1:-65101232 | MS.gene056229:CDS |
| TAAAGCCCACAAACAACTGC+TGG | 0.536619 | 8.1:-65100595 | MS.gene056229:CDS |
| AAGAAATACCTTGACCATGC+AGG | 0.537091 | 8.1:+65100494 | None:intergenic |
| CAAGTAAGTTGGTATGGAAG+AGG | 0.537732 | 8.1:-65097192 | MS.gene056229:CDS |
| GCAATGTTGGATCGTGTGAT+TGG | 0.538798 | 8.1:-65099443 | MS.gene056229:CDS |
| GCAAGGACAGTCAAGACAGC+AGG | 0.538931 | 8.1:-65102226 | MS.gene056229:intron |
| ATGCAATGGGAAACAGCAAT+GGG | 0.539255 | 8.1:-65098960 | MS.gene056229:CDS |
| AACGTGGATGTTGAGGATAA+TGG | 0.541026 | 8.1:+65099585 | None:intergenic |
| AATCTAGTTGTTGAAACCGT+TGG | 0.542542 | 8.1:-65097684 | MS.gene056229:CDS |
| GTAGCTTGCACTCATTTGCA+TGG | 0.542678 | 8.1:+65096981 | None:intergenic |
| TCCATTCTGTAGCAGCCAGT+TGG | 0.543364 | 8.1:+65103186 | None:intergenic |
| AACATTGCAGTTGCCCACAT+TGG | 0.543939 | 8.1:+65099458 | None:intergenic |
| GTTATACATTATGAAGGAGG+TGG | 0.544919 | 8.1:-65099209 | MS.gene056229:CDS |
| AATGTGGGCAACTGCAATGT+TGG | 0.545197 | 8.1:-65099456 | MS.gene056229:CDS |
| TCAAGGAAGAGATTCTTCTC+GGG | 0.548389 | 8.1:-65099231 | MS.gene056229:CDS |
| CTTCCTCCTTTGCCACGCGT+GGG | 0.549184 | 8.1:-65097246 | MS.gene056229:CDS |
| AAGCAGACGGTACAAAGCAA+TGG | 0.551667 | 8.1:-65098761 | MS.gene056229:CDS |
| GCCCTACCACCAGATTCCCC+TGG | 0.552474 | 8.1:+65097078 | None:intergenic |
| ATGTTCCTTATATTGTTCCA+GGG | 0.558572 | 8.1:-65097095 | MS.gene056229:CDS |
| TTGTTTGGAGCAAGAAGAAG+TGG | 0.563596 | 8.1:+65104686 | None:intergenic |
| ATACACAATTTATGCTTCTG+GGG | 0.564364 | 8.1:-65097307 | MS.gene056229:CDS |
| TTCCAGGGGAATCTGGTGGT+AGG | 0.564919 | 8.1:-65097080 | MS.gene056229:CDS |
| ATTAGAGGACGTGTTTCTGT+AGG | 0.566007 | 8.1:+65099110 | None:intergenic |
| TCCCAAACTCGCATATACAT+AGG | 0.566075 | 8.1:+65099155 | None:intergenic |
| CCTACACGCTGGGTTGAAGC+TGG | 0.566327 | 8.1:-65098172 | MS.gene056229:CDS |
| CTGATAGTTATTTGTCCAAG+TGG | 0.567405 | 8.1:-65097500 | MS.gene056229:CDS |
| GGTGTTACCAAGGGCAAGGA+GGG | 0.568952 | 8.1:-65097381 | MS.gene056229:CDS |
| TAGCTTGCACTCATTTGCAT+GGG | 0.569490 | 8.1:+65096982 | None:intergenic |
| TGGAAGCTCGCCAGAAACAC+GGG | 0.571698 | 8.1:+65097547 | None:intergenic |
| CATAGAATCCTGCATGGTCA+AGG | 0.571949 | 8.1:-65100502 | MS.gene056229:intron |
| ACTCCATCTAAACACTTGAA+CGG | 0.572559 | 8.1:+65102136 | None:intergenic |
| CATGCAATGGGAAACAGCAA+TGG | 0.572998 | 8.1:-65098961 | MS.gene056229:CDS |
| ATTGACAATGATAAAGGAGG+AGG | 0.573054 | 8.1:-65097525 | MS.gene056229:CDS |
| CCCAAACTCGCATATACATA+GGG | 0.573558 | 8.1:+65099156 | None:intergenic |
| TCATCTAGACCACAAGCACA+TGG | 0.575195 | 8.1:-65096495 | MS.gene056229:CDS |
| GCCCACATTGGTTCCAGAGT+AGG | 0.576555 | 8.1:+65099470 | None:intergenic |
| TGTTCCTTATATTGTTCCAG+GGG | 0.576557 | 8.1:-65097094 | MS.gene056229:CDS |
| TCATACCAACGTGGATGTTG+AGG | 0.577231 | 8.1:+65099578 | None:intergenic |
| TCCAAACCAGAAGAAATCAA+AGG | 0.580242 | 8.1:-65097352 | MS.gene056229:CDS |
| ATTCCCACGCGTGGCAAAGG+AGG | 0.580859 | 8.1:+65097243 | None:intergenic |
| GTTAGATTTGAAGAAATAGT+CGG | 0.582094 | 8.1:+65101712 | None:intergenic |
| ATGGAAGCTCGCCAGAAACA+CGG | 0.584576 | 8.1:+65097546 | None:intergenic |
| GCATGAACATCATCCAGAAG+TGG | 0.588110 | 8.1:-65100535 | MS.gene056229:CDS |
| AGGATAATGGCTGTTCCTCA+CGG | 0.588770 | 8.1:+65099598 | None:intergenic |
| TTGATTGGCAATCAGGTCCA+TGG | 0.591889 | 8.1:-65098261 | MS.gene056229:CDS |
| GACAACACATTTGGACTCCA+AGG | 0.592777 | 8.1:-65098910 | MS.gene056229:CDS |
| CCAGCTTCAACCCAGCGTGT+AGG | 0.593463 | 8.1:+65098172 | None:intergenic |
| GTGAGTTCCAGGATTCAGAA+TGG | 0.593700 | 8.1:-65103726 | MS.gene056229:CDS |
| AAATATTGGTCGTGAACACA+TGG | 0.594381 | 8.1:+65096446 | None:intergenic |
| CCATGCAGCTGCCAATTCGA+AGG | 0.594770 | 8.1:+65103282 | None:intergenic |
| CGGGTTATACATTATGAAGG+AGG | 0.594871 | 8.1:-65099212 | MS.gene056229:CDS |
| GTGTGATTGGCATGGTTGAG+AGG | 0.594959 | 8.1:-65099430 | MS.gene056229:CDS |
| AACTAGCTCATAATTGTGTG+CGG | 0.596080 | 8.1:+65096933 | None:intergenic |
| TGTTGGTTGGAATGTTATGT+CGG | 0.596597 | 8.1:+65101167 | None:intergenic |
| TGGTAGGGCAGATGTTAGAT+GGG | 0.596827 | 8.1:-65097064 | MS.gene056229:CDS |
| CACAAGCACATGGGTTTGGG+CGG | 0.600176 | 8.1:-65096485 | MS.gene056229:CDS |
| ACATCATCCAGAAGTGGGAA+AGG | 0.600447 | 8.1:-65100529 | MS.gene056229:CDS |
| ACTTCCATCTTCCTAAAGAG+TGG | 0.600920 | 8.1:-65103164 | MS.gene056229:CDS |
| GACTGTGAATCAAGTCAAGT+AGG | 0.601132 | 8.1:-65100633 | MS.gene056229:CDS |
| GTATAGCCATAAAACCCTAA+AGG | 0.601450 | 8.1:+65101138 | None:intergenic |
| AGGAACGAAAGGAGGATCAA+GGG | 0.601470 | 8.1:+65103218 | None:intergenic |
| TCAGAATGGAGTACTTTACC+TGG | 0.601537 | 8.1:-65103712 | MS.gene056229:intron |
| GAAGCTGGGAATCCTCTGAT+GGG | 0.603594 | 8.1:-65101218 | MS.gene056229:CDS |
| TGGCAATGTAAATGAACATG+TGG | 0.605259 | 8.1:+65104611 | None:intergenic |
| CTTCCATCTTCCTAAAGAGT+GGG | 0.611019 | 8.1:-65103163 | MS.gene056229:CDS |
| CATACCTGTATCCTATAGGA+TGG | 0.612930 | 8.1:+65102668 | None:intergenic |
| AAGTAAGTTGGTATGGAAGA+GGG | 0.616500 | 8.1:-65097191 | MS.gene056229:CDS |
| ATCCTACTCTGGAACCAATG+TGG | 0.616773 | 8.1:-65099472 | MS.gene056229:CDS |
| TTCATCTCGATTCCCACGCG+TGG | 0.616808 | 8.1:+65097234 | None:intergenic |
| TTGGTATCAACGAAGCAAAG+TGG | 0.616942 | 8.1:-65103917 | MS.gene056229:CDS |
| CTTCGGAAGGTTCAAGCAGA+CGG | 0.616957 | 8.1:-65098774 | MS.gene056229:CDS |
| TTACATTTGTATATATAGGA+CGG | 0.618958 | 8.1:+65103253 | None:intergenic |
| CATGAACATCATCCAGAAGT+GGG | 0.621222 | 8.1:-65100534 | MS.gene056229:CDS |
| ATCAAGGTGAATTTAAGTGA+CGG | 0.621430 | 8.1:-65098504 | MS.gene056229:CDS |
| TGATTGCTAGGCTCTTCGGA+AGG | 0.623371 | 8.1:-65098787 | MS.gene056229:intron |
| GGGCACACAATATCAGTGCA+TGG | 0.624317 | 8.1:+65099176 | None:intergenic |
| AGATTCATTCCCTAGAGACC+AGG | 0.625123 | 8.1:+65099382 | None:intergenic |
| CACTATCATGAAATTTAGCA+GGG | 0.626645 | 8.1:+65103746 | None:intergenic |
| GCCAATGGTCTTGATCCTCA+AGG | 0.628346 | 8.1:+65102102 | None:intergenic |
| CATCTTCCTAAAGAGTGGGA+AGG | 0.632656 | 8.1:-65103159 | MS.gene056229:intron |
| CAAGTGTTTAGATGGAGTGA+TGG | 0.635673 | 8.1:-65102131 | MS.gene056229:CDS |
| GTTGGATCGTGTGATTGGCA+TGG | 0.639581 | 8.1:-65099438 | MS.gene056229:CDS |
| GAAAAGGAGTAAGGCACTGG+AGG | 0.641574 | 8.1:+65096419 | None:intergenic |
| ATGGCATTCATCATCATCAG+AGG | 0.644858 | 8.1:-65098230 | MS.gene056229:CDS |
| TCCATTGACAATGATAAAGG+AGG | 0.645206 | 8.1:-65097528 | MS.gene056229:CDS |
| TTCTTCAGGTCTGAACCACA+TGG | 0.647843 | 8.1:+65102167 | None:intergenic |
| ATTGTTCCAGGGGAATCTGG+TGG | 0.648023 | 8.1:-65097084 | MS.gene056229:CDS |
| ACAAAGCAATGGGCATATGG+AGG | 0.650441 | 8.1:-65098750 | MS.gene056229:CDS |
| TGTGATTGGCATGGTTGAGA+GGG | 0.651715 | 8.1:-65099429 | MS.gene056229:CDS |
| CCTTGCCCTTGGTAACACCA+TGG | 0.651791 | 8.1:+65097385 | None:intergenic |
| CATCTAGACCACAAGCACAT+GGG | 0.652053 | 8.1:-65096494 | MS.gene056229:CDS |
| AAGATCCGGATTCCCATCAG+AGG | 0.654491 | 8.1:+65101206 | None:intergenic |
| GGCAAACATAGAATCCTGCA+TGG | 0.657884 | 8.1:-65100508 | MS.gene056229:CDS |
| TGCAAGCTACTATAGCACTT+CGG | 0.663356 | 8.1:-65096968 | MS.gene056229:CDS |
| TGGTGTTACCAAGGGCAAGG+AGG | 0.665446 | 8.1:-65097382 | MS.gene056229:CDS |
| GGAACGAAAGGAGGATCAAG+GGG | 0.665703 | 8.1:+65103219 | None:intergenic |
| GCTGAACTCCAACTCTCCAG+TGG | 0.669099 | 8.1:+65098366 | None:intergenic |
| AACACATTTGGACTCCAAGG+AGG | 0.678148 | 8.1:-65098907 | MS.gene056229:CDS |
| GAAGCCAATATTGAGACACA+TGG | 0.690125 | 8.1:-65099521 | MS.gene056229:CDS |
| GAATGCCATAGAGAATACCA+TGG | 0.691255 | 8.1:+65098244 | None:intergenic |
| ACAGAGTGCGACAGGAAATG+CGG | 0.691328 | 8.1:-65097427 | MS.gene056229:CDS |
| ATTATCCTCAACATCCACGT+TGG | 0.696263 | 8.1:-65099583 | MS.gene056229:CDS |
| TCTTCTTCTAGCAAAGCCAG+AGG | 0.698538 | 8.1:-65102054 | MS.gene056229:intron |
| AGTTAAAGGAGATAACATTG+AGG | 0.710032 | 8.1:-65096914 | MS.gene056229:intron |
| TTGCTAGAAGAAGAACATCA+CGG | 0.712658 | 8.1:+65102063 | None:intergenic |
| GCTCATAATTGTGTGCGGCG+CGG | 0.713347 | 8.1:+65096938 | None:intergenic |
| GGCAATGTAAATGAACATGT+GGG | 0.719822 | 8.1:+65104612 | None:intergenic |
| TCAACGACATAACTGCTCTG+CGG | 0.753314 | 8.1:+65098280 | None:intergenic |
| GAGTGATGGATGTTACCTTG+AGG | 0.763210 | 8.1:-65102117 | MS.gene056229:CDS |
| AAAACAATATCAATGCCGTG+AGG | 0.781560 | 8.1:-65099613 | MS.gene056229:CDS |
| TCACATAGCTCATACCAACG+TGG | 0.806258 | 8.1:+65099569 | None:intergenic |
| CTAGAAGAAGAACATCACGG+TGG | 0.808389 | 8.1:+65102066 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 65096346 | 65104741 | 65096346 | ID=MS.gene056229 |
| chr8.1 | mRNA | 65096346 | 65104741 | 65096346 | ID=MS.gene056229.t1;Parent=MS.gene056229 |
| chr8.1 | exon | 65104597 | 65104741 | 65104597 | ID=MS.gene056229.t1.exon1;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65104597 | 65104741 | 65104597 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65103713 | 65103952 | 65103713 | ID=MS.gene056229.t1.exon2;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65103713 | 65103952 | 65103713 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65103160 | 65103306 | 65103160 | ID=MS.gene056229.t1.exon3;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65103160 | 65103306 | 65103160 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65102673 | 65102751 | 65102673 | ID=MS.gene056229.t1.exon4;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65102673 | 65102751 | 65102673 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65102055 | 65102238 | 65102055 | ID=MS.gene056229.t1.exon5;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65102055 | 65102238 | 65102055 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65101679 | 65101744 | 65101679 | ID=MS.gene056229.t1.exon6;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65101679 | 65101744 | 65101679 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65101092 | 65101328 | 65101092 | ID=MS.gene056229.t1.exon7;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65101092 | 65101328 | 65101092 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65100503 | 65100709 | 65100503 | ID=MS.gene056229.t1.exon8;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65100503 | 65100709 | 65100503 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65099351 | 65099654 | 65099351 | ID=MS.gene056229.t1.exon9;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65099351 | 65099654 | 65099351 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65099101 | 65099260 | 65099101 | ID=MS.gene056229.t1.exon10;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65099101 | 65099260 | 65099101 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65098882 | 65098990 | 65098882 | ID=MS.gene056229.t1.exon11;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65098882 | 65098990 | 65098882 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65098664 | 65098799 | 65098664 | ID=MS.gene056229.t1.exon12;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65098664 | 65098799 | 65098664 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65098494 | 65098549 | 65098494 | ID=MS.gene056229.t1.exon13;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65098494 | 65098549 | 65098494 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65098114 | 65098413 | 65098114 | ID=MS.gene056229.t1.exon14;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65098114 | 65098413 | 65098114 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65097625 | 65097727 | 65097625 | ID=MS.gene056229.t1.exon15;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65097625 | 65097727 | 65097625 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65096915 | 65097594 | 65096915 | ID=MS.gene056229.t1.exon16;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65096915 | 65097594 | 65096915 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| chr8.1 | exon | 65096346 | 65096519 | 65096346 | ID=MS.gene056229.t1.exon17;Parent=MS.gene056229.t1 |
| chr8.1 | CDS | 65096346 | 65096519 | 65096346 | ID=cds.MS.gene056229.t1;Parent=MS.gene056229.t1 |
| Gene Sequence |
| Protein sequence |