AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066439


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066439.t1 MTR_1g115575 99.157 593 5 0 1 593 1 593 0.0 1201
MS.gene066439.t1 MTR_7g100430 73.042 549 141 4 46 593 40 582 0.0 791
MS.gene066439.t1 MTR_2g096190 46.209 554 253 9 61 593 15 544 3.25e-147 436
MS.gene066439.t1 MTR_4g062100 47.126 522 237 8 58 563 16 514 3.06e-145 431
MS.gene066439.t1 MTR_7g117620 45.421 546 255 7 61 593 31 546 9.83e-137 409
MS.gene066439.t1 MTR_1g032100 45.436 482 246 7 127 593 52 531 7.15e-128 386
MS.gene066439.t1 MTR_7g100390 42.620 542 273 7 66 593 3 520 3.77e-125 379
MS.gene066439.t1 MTR_8g105260 43.659 481 256 4 127 593 59 538 7.96e-125 378
MS.gene066439.t1 MTR_1g069110 27.021 433 263 12 170 559 18 440 1.39e-27 116
MS.gene066439.t1 MTR_2g101310 22.951 610 356 14 4 567 69 610 1.17e-26 115
MS.gene066439.t1 MTR_2g101310 25.403 248 184 1 96 343 1 247 1.37e-20 96.3
MS.gene066439.t1 MTR_3g105650 22.707 458 298 12 138 577 8 427 5.03e-25 108
MS.gene066439.t1 MTR_2g101320 28.896 308 202 5 74 367 37 341 2.31e-21 99.0
MS.gene066439.t1 MTR_2g101320 26.949 449 250 15 130 522 137 563 2.20e-20 95.9
MS.gene066439.t1 MTR_2g101320 26.471 238 173 2 107 343 11 247 5.61e-19 91.3
MS.gene066439.t1 MTR_2g101310 25.403 248 184 1 96 343 1 247 3.34e-20 94.4
MS.gene066439.t1 MTR_2g101310 21.912 502 281 12 4 462 69 502 4.77e-11 65.9
MS.gene066439.t1 MTR_8g467780 25.469 373 214 10 76 445 10 321 2.10e-19 91.7
MS.gene066439.t1 MTR_2g096760 31.707 205 121 4 134 322 14 215 2.62e-19 91.3
MS.gene066439.t1 MTR_8g073260 26.756 299 178 6 169 452 46 318 5.15e-19 90.5
MS.gene066439.t1 MTR_8g066670 23.622 381 230 9 138 482 1078 1433 1.92e-17 87.0
MS.gene066439.t1 MTR_1g059930 27.090 299 177 8 169 452 47 319 4.99e-17 84.3
MS.gene066439.t1 MTR_8g068990 24.860 358 194 11 169 489 47 366 2.21e-16 82.4
MS.gene066439.t1 MTR_5g085830 26.098 410 256 12 169 562 312 690 3.11e-16 82.8
MS.gene066439.t1 MTR_7g451420 24.611 321 206 6 138 445 12 309 3.27e-16 80.5
MS.gene066439.t1 MTR_5g085810 27.128 376 238 11 169 533 338 688 4.82e-16 82.0
MS.gene066439.t1 MTR_5g085480 24.319 477 310 14 128 562 207 674 8.53e-16 81.3
MS.gene066439.t1 MTR_5g085480 24.319 477 310 14 128 562 47 514 9.87e-16 80.9
MS.gene066439.t1 MTR_8g072510 23.653 427 245 13 169 556 45 429 1.03e-15 80.1
MS.gene066439.t1 MTR_4g063830 30.288 208 124 7 132 322 13 216 1.20e-15 80.1
MS.gene066439.t1 MTR_8g069880 22.636 349 206 8 169 480 42 363 2.22e-15 79.3
MS.gene066439.t1 MTR_7g099570 27.917 240 158 6 135 361 9 246 5.18e-15 78.6
MS.gene066439.t1 MTR_7g021090 23.099 355 208 9 169 488 44 368 2.61e-14 75.5
MS.gene066439.t1 MTR_8g040930 23.684 342 198 10 177 480 2 318 3.66e-14 75.1
MS.gene066439.t1 MTR_8g041240 23.684 342 198 10 177 480 2 318 3.66e-14 75.1
MS.gene066439.t1 MTR_8g062410 25.000 336 200 10 138 453 13 316 8.01e-14 74.3
MS.gene066439.t1 MTR_5g043640 33.708 178 111 5 132 306 20 193 1.33e-13 71.2
MS.gene066439.t1 MTR_3g016210 24.917 301 178 9 169 445 45 321 3.56e-13 72.4
MS.gene066439.t1 MTR_3g055310 29.670 182 106 5 383 542 262 443 3.64e-13 72.4
MS.gene066439.t1 MTR_3g055310 29.670 182 106 5 383 542 288 469 3.80e-13 72.4
MS.gene066439.t1 MTR_3g055310 29.670 182 106 5 383 542 315 496 4.56e-13 72.4
MS.gene066439.t1 MTR_3g055310 29.670 182 106 5 383 542 290 471 4.64e-13 72.0
MS.gene066439.t1 MTR_3g055310 29.670 182 106 5 383 542 147 328 5.07e-13 71.2
MS.gene066439.t1 MTR_3g055310 29.670 182 106 5 383 542 210 391 5.09e-13 71.6
MS.gene066439.t1 MTR_8g039620 21.809 376 234 9 169 509 49 399 6.06e-13 71.6
MS.gene066439.t1 MTR_8g080080 26.183 317 194 9 72 352 77 389 8.19e-13 71.6
MS.gene066439.t1 MTR_1g112830 29.952 207 137 5 120 322 120 322 1.45e-12 70.9
MS.gene066439.t1 MTR_3g085830 28.342 187 125 3 131 309 105 290 2.05e-12 70.5
MS.gene066439.t1 MTR_3g085830 27.208 283 173 9 100 355 108 384 3.83e-12 69.7
MS.gene066439.t1 MTR_5g028190 25.284 352 185 11 213 544 213 506 1.57e-11 67.4
MS.gene066439.t1 MTR_6g027840 27.935 247 158 7 90 323 125 364 2.13e-11 67.0
MS.gene066439.t1 MTR_4g116160 30.319 188 127 4 135 322 40 223 2.69e-11 67.0
MS.gene066439.t1 MTR_4g116160 30.319 188 127 4 135 322 40 223 3.40e-11 66.2
MS.gene066439.t1 MTR_4g129470 30.392 204 98 6 128 294 9 205 4.01e-11 66.2
MS.gene066439.t1 MTR_4g021880 25.806 217 145 5 121 322 86 301 5.80e-11 65.1
MS.gene066439.t1 MTR_1g089180 28.947 228 134 8 114 317 198 421 7.48e-11 65.1
MS.gene066439.t1 MTR_2g438740 21.257 541 333 15 53 545 57 552 8.22e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066439.t1 AT3G12360 80.684 585 104 4 14 593 10 590 0.0 954
MS.gene066439.t1 AT3G12360 80.895 581 102 4 18 593 2 578 0.0 950
MS.gene066439.t1 AT3G09550 71.502 586 148 3 24 593 25 607 0.0 833
MS.gene066439.t1 AT3G09550 71.502 586 148 3 24 593 25 607 0.0 833
MS.gene066439.t1 AT3G09550 71.502 586 148 3 24 593 32 614 0.0 832
MS.gene066439.t1 AT2G31820 43.534 549 271 7 60 593 138 662 7.75e-138 416
MS.gene066439.t1 AT1G05640 44.404 554 270 7 56 593 96 627 7.37e-136 410
MS.gene066439.t1 AT5G60070 46.595 558 244 13 61 593 20 548 3.29e-135 405
MS.gene066439.t1 AT2G01680 43.110 508 273 8 99 593 28 532 2.18e-129 390
MS.gene066439.t1 AT1G07710 44.565 552 264 5 61 593 15 543 2.36e-129 390
MS.gene066439.t1 AT1G07710 44.565 552 264 5 61 593 15 543 2.36e-129 390
MS.gene066439.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene066439.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene066439.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene066439.t1 AT5G02620 41.899 537 248 8 61 556 5 518 1.12e-118 363
MS.gene066439.t1 AT5G02620 41.899 537 248 8 61 556 5 518 1.12e-118 363
MS.gene066439.t1 AT1G10340 25.202 496 309 12 111 552 51 538 2.23e-34 138
MS.gene066439.t1 AT5G54710 27.308 520 284 17 68 552 97 557 1.47e-33 135
MS.gene066439.t1 AT5G54710 27.308 520 284 17 68 552 142 602 2.30e-33 135
MS.gene066439.t1 AT1G10340 24.593 492 313 11 111 552 51 534 2.36e-33 135
MS.gene066439.t1 AT1G34050 26.145 524 294 15 108 554 28 535 6.25e-33 134
MS.gene066439.t1 AT2G24600 26.892 502 290 18 72 538 70 529 3.52e-32 131
MS.gene066439.t1 AT2G24600 26.892 502 290 18 72 538 70 529 3.52e-32 131
MS.gene066439.t1 AT4G03500 26.047 549 280 17 58 522 54 560 2.27e-30 126
MS.gene066439.t1 AT4G03500 26.047 549 280 17 58 522 54 560 2.27e-30 126
MS.gene066439.t1 AT4G03500 26.047 549 280 17 58 522 77 583 2.41e-30 126
MS.gene066439.t1 AT1G03670 25.581 516 328 9 74 562 107 593 2.54e-26 114
MS.gene066439.t1 AT4G03490 27.674 430 267 12 133 551 180 576 5.93e-25 110
MS.gene066439.t1 AT4G03490 27.830 424 262 12 133 545 170 560 7.88e-25 109
MS.gene066439.t1 AT4G03490 27.830 424 262 12 133 545 180 570 8.09e-25 109
MS.gene066439.t1 AT4G03460 26.406 409 256 8 128 522 158 535 8.30e-24 106
MS.gene066439.t1 AT4G03460 26.406 409 256 8 128 522 190 567 8.97e-24 106
MS.gene066439.t1 AT4G03490 24.915 586 332 18 65 574 9 562 1.02e-23 106
MS.gene066439.t1 AT5G50140 22.913 515 297 16 126 563 22 513 1.04e-23 105
MS.gene066439.t1 AT4G03490 25.277 542 318 15 65 551 19 528 2.41e-23 105
MS.gene066439.t1 AT5G54700 28.435 313 159 9 223 523 20 279 1.38e-22 99.8
MS.gene066439.t1 AT4G10720 24.096 415 258 12 169 559 40 421 3.30e-22 100
MS.gene066439.t1 AT5G54700 27.809 356 182 12 202 523 2 316 6.72e-22 99.8
MS.gene066439.t1 AT4G10720 25.076 327 210 6 169 477 40 349 1.95e-21 97.4
MS.gene066439.t1 AT4G14390 24.722 449 281 11 128 556 226 637 2.14e-20 95.9
MS.gene066439.t1 AT4G14390 24.722 449 281 11 128 556 245 656 2.62e-20 95.5
MS.gene066439.t1 AT4G14390 24.889 450 280 12 128 556 245 657 2.97e-20 95.5
MS.gene066439.t1 AT4G03480 26.076 395 232 9 118 482 295 659 1.56e-19 93.2
MS.gene066439.t1 AT4G03480 26.076 395 232 9 118 482 292 656 1.64e-19 93.2
MS.gene066439.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene066439.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene066439.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene066439.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene066439.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene066439.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene066439.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene066439.t1 AT5G15500 23.427 461 288 15 130 559 1 427 2.69e-18 88.2
MS.gene066439.t1 AT2G24600 26.420 405 232 14 72 450 70 434 1.74e-17 86.3
MS.gene066439.t1 AT2G24600 26.420 405 232 14 72 450 70 434 1.74e-17 86.3
MS.gene066439.t1 AT4G03450 24.505 555 306 17 58 528 45 570 1.80e-17 86.7
MS.gene066439.t1 AT5G51160 25.000 352 198 8 157 478 38 353 2.37e-17 85.5
MS.gene066439.t1 AT4G03450 24.505 555 306 17 58 528 45 570 5.25e-17 85.1
MS.gene066439.t1 AT4G03470 26.044 503 294 18 77 542 157 618 1.33e-16 84.0
MS.gene066439.t1 AT3G04140 27.622 286 160 8 100 342 105 386 2.91e-16 82.8
MS.gene066439.t1 AT1G14500 22.769 325 215 5 169 475 40 346 3.82e-15 78.6
MS.gene066439.t1 AT2G03430 34.659 176 106 5 135 306 16 186 8.47e-15 74.7
MS.gene066439.t1 AT4G14390 26.748 329 195 8 128 443 226 521 4.90e-13 72.4
MS.gene066439.t1 AT5G54620 29.570 186 119 2 169 342 40 225 8.05e-13 71.2
MS.gene066439.t1 AT5G54610 27.717 184 123 2 169 342 40 223 8.10e-13 71.2
MS.gene066439.t1 AT3G18670 23.111 450 296 12 123 530 113 554 1.08e-12 71.2
MS.gene066439.t1 AT2G28840 27.273 209 129 7 132 322 12 215 2.01e-12 70.1
MS.gene066439.t1 AT4G03440 23.126 467 308 12 104 550 258 693 3.93e-12 69.7
MS.gene066439.t1 AT4G03440 23.126 467 308 12 104 550 251 686 4.34e-12 69.7
MS.gene066439.t1 AT4G03440 23.126 467 308 12 104 550 251 686 4.34e-12 69.7
MS.gene066439.t1 AT4G14400 23.242 512 310 20 75 538 71 547 3.99e-11 66.2
MS.gene066439.t1 AT4G14400 23.242 512 310 20 75 538 71 547 3.99e-11 66.2
MS.gene066439.t1 AT3G18670 23.684 304 183 7 236 530 346 609 4.68e-11 66.2
MS.gene066439.t1 AT4G14400 23.242 512 310 20 75 538 137 613 5.65e-11 65.9

Find 137 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTGCATATGGCTGTAAA+AGG 0.222840 1.2:+85731976 MS.gene066439:CDS
TGATATTGATTCTCAGATAA+TGG 0.227356 1.2:+85730722 MS.gene066439:CDS
GTGGAGTTTCCTCAGCTCTT+TGG 0.250605 1.2:-85733046 None:intergenic
GTTATGCTTCCTGACAAATT+TGG 0.259995 1.2:+85732048 MS.gene066439:CDS
GAACGAGTGGGCTGCAATTC+TGG 0.267500 1.2:+85733404 MS.gene066439:CDS
ACCTCCAATTTCAACCTTCC+AGG 0.283929 1.2:+85730346 MS.gene066439:CDS
ACTCAAAGAGATTCAGAAAA+AGG 0.285730 1.2:+85730477 MS.gene066439:CDS
AAGGACATCCTCTCTCGATA+TGG 0.290107 1.2:+85732895 MS.gene066439:CDS
CCAACCTGGAAGGTTGAAAT+TGG 0.303178 1.2:-85730350 None:intergenic
TTCATTTGCAGCCATTGTTC+AGG 0.330505 1.2:+85731693 MS.gene066439:intron
CTGCTTCTCTTTCTTCCTCA+TGG 0.331730 1.2:-85733508 None:intergenic
GCAATTCTGGTTACAGTTGT+TGG 0.335512 1.2:+85733417 MS.gene066439:CDS
GATATTGATTCTCAGATAAT+GGG 0.350929 1.2:+85730723 MS.gene066439:CDS
AATTCGATCAACCTCGGAAT+TGG 0.351942 1.2:-85733577 None:intergenic
TGAAGAGTCATCAGATATAA+AGG 0.366092 1.2:+85732876 MS.gene066439:CDS
TTTGTTTACTGCTGCTGAAA+AGG 0.377535 1.2:+85730842 MS.gene066439:CDS
AGATGGCGACGGAGATATTT+CGG 0.380641 1.2:-85730532 None:intergenic
GTTCAAATTACCCTTGTTAG+AGG 0.385400 1.2:+85733267 MS.gene066439:CDS
GTGATAATATCCGGAGTTAT+TGG 0.388823 1.2:+85733444 MS.gene066439:CDS
GTGAAACTAAAGCAGAGAAA+AGG 0.392404 1.2:+85733289 MS.gene066439:CDS
TTTGCATTTAGCTGCTCGTC+CGG 0.403120 1.2:+85731876 MS.gene066439:CDS
GTCAAAGGATGGCAGCTTGT+TGG 0.404723 1.2:+85731825 MS.gene066439:CDS
GGGTCATCTTGATGTTGTTA+AGG 0.408314 1.2:+85730863 MS.gene066439:CDS
AGAAAGAGAAGCAGCTAGCC+AGG 0.411228 1.2:+85733517 MS.gene066439:CDS
AGGACATCCTCTCTCGATAT+GGG 0.415929 1.2:+85732896 MS.gene066439:CDS
CACCACTGTCACCGAGTTTG+TGG 0.435710 1.2:-85733088 None:intergenic
CTCGTCGCTGCTGTTATAAG+TGG 0.455896 1.2:-85731772 None:intergenic
TCCGTCGTCCGCGACGGCGC+CGG 0.456322 1.2:+85730554 MS.gene066439:CDS
AGGCTTTCACGATTTCTGTA+TGG 0.466846 1.2:-85731900 None:intergenic
TTGCATTTAGCTGCTCGTCC+GGG 0.469773 1.2:+85731877 MS.gene066439:CDS
GCTGCTATATTCACCGTACC+TGG 0.472210 1.2:+85733138 MS.gene066439:CDS
TCCTCAGTTCGTCCCTTGGT+TGG 0.473921 1.2:-85732942 None:intergenic
CATTTACGTTTGTGTCTGGC+AGG 0.475438 1.2:-85732798 None:intergenic
TTGTTTACTGCTGCTGAAAA+GGG 0.479987 1.2:+85730843 MS.gene066439:CDS
GCTCAGCAAAGACCCTCAAT+TGG 0.481998 1.2:+85731924 MS.gene066439:CDS
CTTTAGTTTCACCTCTAACA+AGG 0.482809 1.2:-85733278 None:intergenic
CCAAGCTTAAGCAAAACTAT+TGG 0.486154 1.2:+85731733 MS.gene066439:CDS
TGAGTTGGATCCACTTCTCC+TGG 0.491866 1.2:-85733535 None:intergenic
GGGGATAACGATGATGGATC+AGG 0.492044 1.2:+85733162 MS.gene066439:CDS
CAGTCCTCCGAGCCAATTGA+GGG 0.492228 1.2:-85731936 None:intergenic
TCCTTTCAAACTCAGGAAAA+CGG 0.494021 1.2:+85730583 MS.gene066439:CDS
TGAAACTAAAGCAGAGAAAA+GGG 0.501105 1.2:+85733290 MS.gene066439:CDS
AGGGCAAACTGCATTGCATA+TGG 0.501695 1.2:+85731966 MS.gene066439:CDS
TCAGCTCTTTGGATATATTG+TGG 0.502735 1.2:-85733035 None:intergenic
ATCGTTATCCCCACCAGGTA+CGG 0.503271 1.2:-85733151 None:intergenic
TTGAGGGTCTTTGCTGAGCA+AGG 0.503619 1.2:-85731920 None:intergenic
AATGCATTTACGTTTGTGTC+TGG 0.503703 1.2:-85732802 None:intergenic
TTGGAAATTGCAAGATCCAA+TGG 0.508338 1.2:+85731844 MS.gene066439:CDS
AAGTACGTGAAGCAAGTAAC+GGG 0.508570 1.2:+85730627 MS.gene066439:CDS
GCTCGGAGGACTGACAAGAA+AGG 0.509842 1.2:+85731946 MS.gene066439:CDS
GACGGAGATATTTCGGAAAG+TGG 0.514348 1.2:-85730525 None:intergenic
CTCGGAGGACTGACAAGAAA+GGG 0.519611 1.2:+85731947 MS.gene066439:CDS
TTCACGATTTCTGTATGGCC+CGG 0.525638 1.2:-85731895 None:intergenic
GTTGGAGGAGTGATAATATC+CGG 0.527167 1.2:+85733435 MS.gene066439:CDS
GCCGGCGCCGTCGCGGACGA+CGG 0.529146 1.2:-85730555 None:intergenic
CATTGCATATGGCTGTAAAA+GGG 0.531587 1.2:+85731977 MS.gene066439:CDS
GAAAGATGTTCACACACAGC+TGG 0.535788 1.2:+85732984 MS.gene066439:CDS
CCTGGTGGGGATAACGATGA+TGG 0.535860 1.2:+85733156 MS.gene066439:CDS
GCCATCTCCGTCGTCCGCGA+CGG 0.536247 1.2:+85730548 MS.gene066439:CDS
GCTGTGTTGCCAAATTTGTC+AGG 0.537540 1.2:-85732057 None:intergenic
GGAAAACGGATCGATCAAGC+AGG 0.537963 1.2:+85730597 MS.gene066439:CDS
CTATATTCACCGTACCTGGT+GGG 0.538227 1.2:+85733142 MS.gene066439:CDS
CAGCATTGCATGTGGCAACC+AGG 0.541967 1.2:+85732076 MS.gene066439:CDS
AAGCAGCTAGCCAGGAGAAG+TGG 0.542236 1.2:+85733525 MS.gene066439:CDS
TCAGTCCTCCGAGCCAATTG+AGG 0.545108 1.2:-85731937 None:intergenic
TCGGAAAGTGGGTTCTGTGT+TGG 0.547229 1.2:-85730513 None:intergenic
GACTAGAGCCGGCGCCGTCG+CGG 0.548417 1.2:-85730562 None:intergenic
TTGCATATTGCTGCTAGTCA+AGG 0.549825 1.2:+85730948 MS.gene066439:CDS
CAGATAATGGGTACTTTGAG+TGG 0.549949 1.2:+85730735 MS.gene066439:CDS
CTCTGAATGATGCCATGAGT+TGG 0.551504 1.2:-85733550 None:intergenic
AAGAGCTGAGGAAACTCCAC+AGG 0.552962 1.2:+85733049 MS.gene066439:CDS
ATTCTGGTTACAGTTGTTGG+AGG 0.554005 1.2:+85733420 MS.gene066439:CDS
GATTAACAAGCTCATGTGGT+TGG 0.554304 1.2:+85733323 MS.gene066439:CDS
AAGGGACGAACTGAGGAAAA+CGG 0.554349 1.2:+85732948 MS.gene066439:CDS
ACCTGGAAGGTTGAAATTGG+AGG 0.558297 1.2:-85730347 None:intergenic
GCCGTCGCGGACGACGGAGA+TGG 0.559929 1.2:-85730549 None:intergenic
CCATCATCGTTATCCCCACC+AGG 0.564948 1.2:-85733156 None:intergenic
TTTAGTTTCACCTCTAACAA+GGG 0.565107 1.2:-85733277 None:intergenic
GAGTTTGAAAGGACTAGAGC+CGG 0.567456 1.2:-85730573 None:intergenic
GCAAAGACCCTCAATTGGCT+CGG 0.569896 1.2:+85731929 MS.gene066439:CDS
GCTCTAGTCCTTTCAAACTC+AGG 0.572097 1.2:+85730576 MS.gene066439:CDS
CATTGTTAATTCCTTCCCTG+TGG 0.572226 1.2:-85733065 None:intergenic
AGCAGAGAAAAGGGTAGTTG+AGG 0.573019 1.2:+85733299 MS.gene066439:CDS
TCGTCGGTCGGAGGAACGAG+TGG 0.574175 1.2:+85733391 MS.gene066439:CDS
CGCTGCTGTTATAAGTGGAG+TGG 0.575162 1.2:-85731767 None:intergenic
GCTGCTAGTCAAGGACATCA+TGG 0.575482 1.2:+85730957 MS.gene066439:CDS
ATAAGTGGAGTGGCGTTGGA+TGG 0.578501 1.2:-85731757 None:intergenic
GCAGCTCAAAGAGGTGATGT+TGG 0.583391 1.2:+85730678 MS.gene066439:CDS
GTGAATGAAGAGAATGAACT+TGG 0.587406 1.2:+85730810 MS.gene066439:CDS
TCTGAGAATCAATATCAAGA+AGG 0.587872 1.2:-85730716 None:intergenic
ACGGAGATATTTCGGAAAGT+GGG 0.587917 1.2:-85730524 None:intergenic
TGTTATAAGTGGAGTGGCGT+TGG 0.592828 1.2:-85731761 None:intergenic
TTCAGAGTTCTCCAATTCCG+AGG 0.592884 1.2:+85733566 MS.gene066439:CDS
GCTATATTCACCGTACCTGG+TGG 0.598478 1.2:+85733141 MS.gene066439:CDS
ATCTAGTAAAACCTGAACAA+TGG 0.600510 1.2:-85731704 None:intergenic
GCCTCTTCGTACATAGTCGT+CGG 0.600824 1.2:+85733375 MS.gene066439:CDS
CGCATAAATTCGATCAACCT+CGG 0.601587 1.2:-85733583 None:intergenic
CGTACATAGTCGTCGGTCGG+AGG 0.602499 1.2:+85733382 MS.gene066439:CDS
GTTGGCTTCTGTCTGTACCT+CGG 0.602568 1.2:+85733341 MS.gene066439:CDS
CTGAGGAAACTCCACAGGGA+AGG 0.603249 1.2:+85733054 MS.gene066439:CDS
TATATTCACCGTACCTGGTG+GGG 0.603908 1.2:+85733143 MS.gene066439:CDS
GAAGTACGTGAAGCAAGTAA+CGG 0.604371 1.2:+85730626 MS.gene066439:CDS
GGAGAAGTGGATCCAACTCA+TGG 0.605497 1.2:+85733538 MS.gene066439:CDS
AGAAGAAGAACCAACCTGGA+AGG 0.609441 1.2:-85730360 None:intergenic
GACGAGAGGGCACGTCGAAG+TGG 0.609993 1.2:+85731789 MS.gene066439:CDS
GGTGAATGAACTTCTGTCAA+AGG 0.612992 1.2:+85731810 MS.gene066439:CDS
TTATAACAGCAGCGACGAGA+GGG 0.613377 1.2:+85731776 MS.gene066439:CDS
AATGAACTTCTGTCAAAGGA+TGG 0.613527 1.2:+85731814 MS.gene066439:CDS
TCTGATGACTCTTCAGAGAG+AGG 0.615975 1.2:-85732868 None:intergenic
AATTAACAATGCCACAAACT+CGG 0.616650 1.2:+85733077 MS.gene066439:CDS
CGTCGGTCGGAGGAACGAGT+GGG 0.619749 1.2:+85733392 MS.gene066439:CDS
ACCAACCAAGGGACGAACTG+AGG 0.620407 1.2:+85732941 MS.gene066439:CDS
CTAACGAGCTCAACCAACCA+AGG 0.621035 1.2:+85732929 MS.gene066439:CDS
CTTCATCTAGCAGCTCAAAG+AGG 0.623399 1.2:+85730669 MS.gene066439:CDS
CTTCGTACATAGTCGTCGGT+CGG 0.624785 1.2:+85733379 MS.gene066439:CDS
CTTATAACAGCAGCGACGAG+AGG 0.631608 1.2:+85731775 MS.gene066439:CDS
TGCCACAAACTCGGTGACAG+TGG 0.632510 1.2:+85733086 MS.gene066439:CDS
AGTCATAGTGCCAATAACTC+CGG 0.636725 1.2:-85733454 None:intergenic
TGGCAACACAGCATTGCATG+TGG 0.637663 1.2:+85732068 MS.gene066439:CDS
GGACATCCTCTCTCGATATG+GGG 0.638757 1.2:+85732897 MS.gene066439:CDS
TGACTAGCAGCAATATGCAA+AGG 0.639675 1.2:-85730945 None:intergenic
ACAATATATCCAAAGAGCTG+AGG 0.644642 1.2:+85733037 MS.gene066439:CDS
AAGACCCTCAATTGGCTCGG+AGG 0.651684 1.2:+85731932 MS.gene066439:CDS
GCGGACGACGGAGATGGCGA+CGG 0.652416 1.2:-85730543 None:intergenic
GGCTTCTGTCTGTACCTCGG+TGG 0.655940 1.2:+85733344 MS.gene066439:CDS
GAAAACGGATCGATCAAGCA+GGG 0.663000 1.2:+85730598 MS.gene066439:CDS
TAACGATGATGGATCAGGAG+TGG 0.663853 1.2:+85733167 MS.gene066439:CDS
TAAGTGCCCCATATCGAGAG+AGG 0.665007 1.2:-85732903 None:intergenic
AGGTGATTAACAAGCTCATG+TGG 0.671742 1.2:+85733319 MS.gene066439:CDS
ACCGACGACTATGTACGAAG+AGG 0.681066 1.2:-85733376 None:intergenic
CACAAACTCGGTGACAGTGG+TGG 0.691648 1.2:+85733089 MS.gene066439:CDS
TAACGAGCTCAACCAACCAA+GGG 0.693605 1.2:+85732930 MS.gene066439:CDS
CTATGACTTACTATGTAGTG+AGG 0.708286 1.2:+85733469 MS.gene066439:CDS
CTAAGAGAACAAGATCCATG+AGG 0.720939 1.2:+85733493 MS.gene066439:CDS
AGAGCTGAGGAAACTCCACA+GGG 0.730372 1.2:+85733050 MS.gene066439:CDS
AAAAGGGCAGAGCTGTGACG+TGG 0.742175 1.2:+85731993 MS.gene066439:CDS
AGAGGCAATAAATGCCACCG+AGG 0.784742 1.2:-85733358 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAAGAAAACAAG+AGG - chr1.2:85732661-85732680 None:intergenic 15.0%
!!! AATATTAGATTTTTCATTCA+AGG - chr1.2:85732734-85732753 None:intergenic 15.0%
!!! ATTTTGCTTTTTGTAAAAAT+GGG + chr1.2:85731070-85731089 MS.gene066439:intron 15.0%
!!! TATTTTGCTTTTTGTAAAAA+TGG + chr1.2:85731069-85731088 MS.gene066439:intron 15.0%
!!! TTTTTTTAAGAAGCTATTAA+TGG + chr1.2:85731462-85731481 MS.gene066439:intron 15.0%
!! AATTTAATCAGATATACTTC+TGG - chr1.2:85731350-85731369 None:intergenic 20.0%
!! GCAACTACTTAAATAAATAA+AGG - chr1.2:85732463-85732482 None:intergenic 20.0%
!! TAATACTACTACTACAAATA+TGG - chr1.2:85732235-85732254 None:intergenic 20.0%
!! TCATAATTGAGTTTCTTTAT+TGG - chr1.2:85731427-85731446 None:intergenic 20.0%
!!! TATTTTGAATGAATTGACTT+TGG + chr1.2:85731104-85731123 MS.gene066439:intron 20.0%
!!! TGTTATTTTGCTTTGAAAAT+TGG + chr1.2:85732537-85732556 MS.gene066439:intron 20.0%
!!! TTTTTTTTGGAACATATTCT+TGG + chr1.2:85731302-85731321 MS.gene066439:intron 20.0%
! AAACATGTTATATGAGACAA+GGG + chr1.2:85732603-85732622 MS.gene066439:intron 25.0%
! AACATCAAAACAAAGGAAAA+AGG - chr1.2:85731030-85731049 None:intergenic 25.0%
! AAGGTAAAACGATTTATGTT+TGG + chr1.2:85731141-85731160 MS.gene066439:intron 25.0%
! AGGTAAAACGATTTATGTTT+GGG + chr1.2:85731142-85731161 MS.gene066439:intron 25.0%
! ATTAACTTACTCGAACAAAT+CGG + chr1.2:85732185-85732204 MS.gene066439:intron 25.0%
! CTCAATTATGATGCTATTAA+TGG + chr1.2:85731436-85731455 MS.gene066439:intron 25.0%
! TTACAGTGAAGTAAAAAGAT+GGG - chr1.2:85730395-85730414 None:intergenic 25.0%
! TTGAGTATTTATCTTGCTTA+AGG + chr1.2:85731398-85731417 MS.gene066439:intron 25.0%
! TTTAAGTAGTTGCAAGTATA+AGG + chr1.2:85732470-85732489 MS.gene066439:intron 25.0%
! TTTACAGTGAAGTAAAAAGA+TGG - chr1.2:85730396-85730415 None:intergenic 25.0%
!! CAATTTTGTCTAGAAGTTTT+GGG + chr1.2:85732635-85732654 MS.gene066439:intron 25.0%
!! TATATTGTGGACATTTTTGT+TGG - chr1.2:85733025-85733044 None:intergenic 25.0%
!! TCAATTTTGTCTAGAAGTTT+TGG + chr1.2:85732634-85732653 MS.gene066439:intron 25.0%
!!! ATTGTTGTTTCTCAATTTCT+TGG + chr1.2:85732751-85732770 MS.gene066439:intron 25.0%
!!! GATATTGATTCTCAGATAAT+GGG + chr1.2:85730723-85730742 MS.gene066439:CDS 25.0%
!!! TGATATTGATTCTCAGATAA+TGG + chr1.2:85730722-85730741 MS.gene066439:CDS 25.0%
!!! TTTTCCTTTGTTTTGATGTT+GGG + chr1.2:85731030-85731049 MS.gene066439:intron 25.0%
!!! TTTTTCCTTTGTTTTGATGT+TGG + chr1.2:85731029-85731048 MS.gene066439:intron 25.0%
AAATCCCAACATCAAAACAA+AGG - chr1.2:85731037-85731056 None:intergenic 30.0%
AAGTCTCCAATATTGAAAAC+AGG + chr1.2:85732272-85732291 MS.gene066439:intron 30.0%
AATAAGACAACGTTGATGTT+TGG - chr1.2:85731567-85731586 None:intergenic 30.0%
AATTAACAATGCCACAAACT+CGG + chr1.2:85733077-85733096 MS.gene066439:CDS 30.0%
ACATAGCATTAACTCTACTA+CGG - chr1.2:85731533-85731552 None:intergenic 30.0%
ACTCAAAGAGATTCAGAAAA+AGG + chr1.2:85730477-85730496 MS.gene066439:CDS 30.0%
AGATTACTACAAAGAACAGA+AGG - chr1.2:85731663-85731682 None:intergenic 30.0%
ATCTAGTAAAACCTGAACAA+TGG - chr1.2:85731707-85731726 None:intergenic 30.0%
GAAACATGTTATATGAGACA+AGG + chr1.2:85732602-85732621 MS.gene066439:intron 30.0%
GTGCACACTACTTAAAAAAA+TGG - chr1.2:85732573-85732592 None:intergenic 30.0%
TACAGTGAAGTAAAAAGATG+GGG - chr1.2:85730394-85730413 None:intergenic 30.0%
TCATCACTATATGTACTGTA+TGG - chr1.2:85732155-85732174 None:intergenic 30.0%
TCTGAGAATCAATATCAAGA+AGG - chr1.2:85730719-85730738 None:intergenic 30.0%
TGAAACTAAAGCAGAGAAAA+GGG + chr1.2:85733290-85733309 MS.gene066439:CDS 30.0%
TGAAGAGTCATCAGATATAA+AGG + chr1.2:85732876-85732895 MS.gene066439:CDS 30.0%
TTAACTTACTCGAACAAATC+GGG + chr1.2:85732186-85732205 MS.gene066439:intron 30.0%
! AACATCAACGTTGTCTTATT+TGG + chr1.2:85731567-85731586 MS.gene066439:intron 30.0%
! AAGATTTTCAGCAATGTCAA+GGG - chr1.2:85732848-85732867 None:intergenic 30.0%
! GTTTCTAAAAAGAATCGATC+TGG + chr1.2:85730915-85730934 MS.gene066439:CDS 30.0%
! TAGCTACCTGTTTTCAATAT+TGG - chr1.2:85732281-85732300 None:intergenic 30.0%
! TTTAGTTTCACCTCTAACAA+GGG - chr1.2:85733280-85733299 None:intergenic 30.0%
!! CAATAGTTTTGCTTAAGCTT+GGG - chr1.2:85731735-85731754 None:intergenic 30.0%
!! TATTGCGCTTTTTACATCTT+TGG + chr1.2:85733233-85733252 MS.gene066439:CDS 30.0%
!! TTTGGCTAAAATTGAGTTGA+AGG + chr1.2:85731122-85731141 MS.gene066439:intron 30.0%
!!! ATGCAAAGCATTTTTTCCAT+TGG - chr1.2:85731863-85731882 None:intergenic 30.0%
!!! TTGTTTTGATGTTGGGATTT+TGG + chr1.2:85731037-85731056 MS.gene066439:intron 30.0%
AAGTAGTTGCAAGTATAAGG+TGG + chr1.2:85732473-85732492 MS.gene066439:intron 35.0%
AATGAACTTCTGTCAAAGGA+TGG + chr1.2:85731814-85731833 MS.gene066439:CDS 35.0%
AATGCATTTACGTTTGTGTC+TGG - chr1.2:85732805-85732824 None:intergenic 35.0%
ACAATATATCCAAAGAGCTG+AGG + chr1.2:85733037-85733056 MS.gene066439:CDS 35.0%
ACAGTGAAGTAAAAAGATGG+GGG - chr1.2:85730393-85730412 None:intergenic 35.0%
ACATGCTCAAAAGTAACTAG+GGG - chr1.2:85732704-85732723 None:intergenic 35.0%
CATTGCATATGGCTGTAAAA+GGG + chr1.2:85731977-85731996 MS.gene066439:CDS 35.0%
CCAAGCTTAAGCAAAACTAT+TGG + chr1.2:85731733-85731752 MS.gene066439:CDS 35.0%
CTATGACTTACTATGTAGTG+AGG + chr1.2:85733469-85733488 MS.gene066439:CDS 35.0%
CTTGAGTAGCTTCAATTTGT+GGG + chr1.2:85731606-85731625 MS.gene066439:intron 35.0%
GACATGCTCAAAAGTAACTA+GGG - chr1.2:85732705-85732724 None:intergenic 35.0%
GCTTCAAGTAGAATCAGTTA+TGG + chr1.2:85731240-85731259 MS.gene066439:intron 35.0%
GTGAAACTAAAGCAGAGAAA+AGG + chr1.2:85733289-85733308 MS.gene066439:CDS 35.0%
GTGAATGAAGAGAATGAACT+TGG + chr1.2:85730810-85730829 MS.gene066439:CDS 35.0%
GTGATAATATCCGGAGTTAT+TGG + chr1.2:85733444-85733463 MS.gene066439:CDS 35.0%
GTTATGCTTCCTGACAAATT+TGG + chr1.2:85732048-85732067 MS.gene066439:CDS 35.0%
GTTCAAATTACCCTTGTTAG+AGG + chr1.2:85733267-85733286 MS.gene066439:CDS 35.0%
TCAGCTCTTTGGATATATTG+TGG - chr1.2:85733038-85733057 None:intergenic 35.0%
TCAGTTATGGAGACAAAATC+AGG + chr1.2:85731253-85731272 MS.gene066439:intron 35.0%
TCCTTTCAAACTCAGGAAAA+CGG + chr1.2:85730583-85730602 MS.gene066439:CDS 35.0%
TGACATGCTCAAAAGTAACT+AGG - chr1.2:85732706-85732725 None:intergenic 35.0%
TGCTACAAAAAATGCAAACG+AGG + chr1.2:85732305-85732324 MS.gene066439:intron 35.0%
TTGGAAATTGCAAGATCCAA+TGG + chr1.2:85731844-85731863 MS.gene066439:CDS 35.0%
TTGTTTACTGCTGCTGAAAA+GGG + chr1.2:85730843-85730862 MS.gene066439:CDS 35.0%
TTTGTTTACTGCTGCTGAAA+AGG + chr1.2:85730842-85730861 MS.gene066439:CDS 35.0%
! CTTTAGTTTCACCTCTAACA+AGG - chr1.2:85733281-85733300 None:intergenic 35.0%
! GAAGATTTTCAGCAATGTCA+AGG - chr1.2:85732849-85732868 None:intergenic 35.0%
! TACGCTTTTACGTTTATTGC+AGG + chr1.2:85730444-85730463 MS.gene066439:intron 35.0%
! TAGCTTCAATTTGTGGGTTA+TGG + chr1.2:85731612-85731631 MS.gene066439:intron 35.0%
! TTTTACATCTTTGGCTGTTG+TGG + chr1.2:85733242-85733261 MS.gene066439:CDS 35.0%
!! CCAATAGTTTTGCTTAAGCT+TGG - chr1.2:85731736-85731755 None:intergenic 35.0%
!!! GACATTTTTGTTGGTTCTCT+TGG - chr1.2:85733016-85733035 None:intergenic 35.0%
AAGTACGTGAAGCAAGTAAC+GGG + chr1.2:85730627-85730646 MS.gene066439:CDS 40.0%
AATTCGATCAACCTCGGAAT+TGG - chr1.2:85733580-85733599 None:intergenic 40.0%
ACGGAGATATTTCGGAAAGT+GGG - chr1.2:85730527-85730546 None:intergenic 40.0%
AGATAGAAGAAGAACCAACC+TGG - chr1.2:85730367-85730386 None:intergenic 40.0%
AGGCTTTCACGATTTCTGTA+TGG - chr1.2:85731903-85731922 None:intergenic 40.0%
AGGTGATTAACAAGCTCATG+TGG + chr1.2:85733319-85733338 MS.gene066439:CDS 40.0%
AGTCATAGTGCCAATAACTC+CGG - chr1.2:85733457-85733476 None:intergenic 40.0%
CATTGTTAATTCCTTCCCTG+TGG - chr1.2:85733068-85733087 None:intergenic 40.0%
CCACAAATTGAAGCTACTCA+AGG - chr1.2:85731608-85731627 None:intergenic 40.0%
CCTTGAGTAGCTTCAATTTG+TGG + chr1.2:85731605-85731624 MS.gene066439:intron 40.0%
CGCATAAATTCGATCAACCT+CGG - chr1.2:85733586-85733605 None:intergenic 40.0%
CTAAGAGAACAAGATCCATG+AGG + chr1.2:85733493-85733512 MS.gene066439:CDS 40.0%
GAAGTACGTGAAGCAAGTAA+CGG + chr1.2:85730626-85730645 MS.gene066439:CDS 40.0%
GATTAACAAGCTCATGTGGT+TGG + chr1.2:85733323-85733342 MS.gene066439:CDS 40.0%
GCATTGCATATGGCTGTAAA+AGG + chr1.2:85731976-85731995 MS.gene066439:CDS 40.0%
GCTACTCAAGGTCTAACAAT+TGG - chr1.2:85731596-85731615 None:intergenic 40.0%
GGGTCATCTTGATGTTGTTA+AGG + chr1.2:85730863-85730882 MS.gene066439:CDS 40.0%
GGTGAATGAACTTCTGTCAA+AGG + chr1.2:85731810-85731829 MS.gene066439:CDS 40.0%
GTTGGAGGAGTGATAATATC+CGG + chr1.2:85733435-85733454 MS.gene066439:CDS 40.0%
TGACTAGCAGCAATATGCAA+AGG - chr1.2:85730948-85730967 None:intergenic 40.0%
TTCATTTGCAGCCATTGTTC+AGG + chr1.2:85731693-85731712 MS.gene066439:intron 40.0%
TTGCATATTGCTGCTAGTCA+AGG + chr1.2:85730948-85730967 MS.gene066439:CDS 40.0%
! ATTCTGGTTACAGTTGTTGG+AGG + chr1.2:85733420-85733439 MS.gene066439:CDS 40.0%
! GCAATTCTGGTTACAGTTGT+TGG + chr1.2:85733417-85733436 MS.gene066439:CDS 40.0%
! GCTTTTACGTTTATTGCAGG+TGG + chr1.2:85730447-85730466 MS.gene066439:intron 40.0%
! TCCGTTTTCCTGAGTTTGAA+AGG - chr1.2:85730587-85730606 None:intergenic 40.0%
!! CAGATAATGGGTACTTTGAG+TGG + chr1.2:85730735-85730754 MS.gene066439:CDS 40.0%
AACCAGGAAAAAGCGAGTAG+AGG + chr1.2:85732092-85732111 MS.gene066439:CDS 45.0%
AAGGACATCCTCTCTCGATA+TGG + chr1.2:85732895-85732914 MS.gene066439:CDS 45.0%
AAGGGACGAACTGAGGAAAA+CGG + chr1.2:85732948-85732967 MS.gene066439:CDS 45.0%
ACCTCCAATTTCAACCTTCC+AGG + chr1.2:85730346-85730365 MS.gene066439:CDS 45.0%
ACCTGGAAGGTTGAAATTGG+AGG - chr1.2:85730350-85730369 None:intergenic 45.0%
AGAAGAAGAACCAACCTGGA+AGG - chr1.2:85730363-85730382 None:intergenic 45.0%
AGATGGCGACGGAGATATTT+CGG - chr1.2:85730535-85730554 None:intergenic 45.0%
AGCAGAGAAAAGGGTAGTTG+AGG + chr1.2:85733299-85733318 MS.gene066439:CDS 45.0%
AGGACATCCTCTCTCGATAT+GGG + chr1.2:85732896-85732915 MS.gene066439:CDS 45.0%
AGGGCAAACTGCATTGCATA+TGG + chr1.2:85731966-85731985 MS.gene066439:CDS 45.0%
CATTTACGTTTGTGTCTGGC+AGG - chr1.2:85732801-85732820 None:intergenic 45.0%
CCAACCTGGAAGGTTGAAAT+TGG - chr1.2:85730353-85730372 None:intergenic 45.0%
CCAATTTCAACCTTCCAGGT+TGG + chr1.2:85730350-85730369 MS.gene066439:intron 45.0%
CTATATTCACCGTACCTGGT+GGG + chr1.2:85733142-85733161 MS.gene066439:CDS 45.0%
CTCTGAATGATGCCATGAGT+TGG - chr1.2:85733553-85733572 None:intergenic 45.0%
CTGCTTCTCTTTCTTCCTCA+TGG - chr1.2:85733511-85733530 None:intergenic 45.0%
CTTCATCTAGCAGCTCAAAG+AGG + chr1.2:85730669-85730688 MS.gene066439:CDS 45.0%
GAAAACGGATCGATCAAGCA+GGG + chr1.2:85730598-85730617 MS.gene066439:CDS 45.0%
GAAAGATGTTCACACACAGC+TGG + chr1.2:85732984-85733003 MS.gene066439:CDS 45.0%
GACGGAGATATTTCGGAAAG+TGG - chr1.2:85730528-85730547 None:intergenic 45.0%
GAGTTTGAAAGGACTAGAGC+CGG - chr1.2:85730576-85730595 None:intergenic 45.0%
GCTCTAGTCCTTTCAAACTC+AGG + chr1.2:85730576-85730595 MS.gene066439:CDS 45.0%
GCTGTGTTGCCAAATTTGTC+AGG - chr1.2:85732060-85732079 None:intergenic 45.0%
TAACGAGCTCAACCAACCAA+GGG + chr1.2:85732930-85732949 MS.gene066439:CDS 45.0%
TATATTCACCGTACCTGGTG+GGG + chr1.2:85733143-85733162 MS.gene066439:CDS 45.0%
TCTGATGACTCTTCAGAGAG+AGG - chr1.2:85732871-85732890 None:intergenic 45.0%
TGTTATAAGTGGAGTGGCGT+TGG - chr1.2:85731764-85731783 None:intergenic 45.0%
TTATAACAGCAGCGACGAGA+GGG + chr1.2:85731776-85731795 MS.gene066439:CDS 45.0%
TTCACGATTTCTGTATGGCC+CGG - chr1.2:85731898-85731917 None:intergenic 45.0%
TTCAGAGTTCTCCAATTCCG+AGG + chr1.2:85733566-85733585 MS.gene066439:CDS 45.0%
TTTGCATTTAGCTGCTCGTC+CGG + chr1.2:85731876-85731895 MS.gene066439:CDS 45.0%
!! CAATGTCAAGGGCTGTTTTG+TGG - chr1.2:85732837-85732856 None:intergenic 45.0%
!! TAACGATGATGGATCAGGAG+TGG + chr1.2:85733167-85733186 MS.gene066439:CDS 45.0%
!!! TACCTCTACTCGCTTTTTCC+TGG - chr1.2:85732097-85732116 None:intergenic 45.0%
!!! TTTTGTATTTTTTTTTTTTT+TGG + chr1.2:85731289-85731308 MS.gene066439:intron 5.0%
AAGAGCTGAGGAAACTCCAC+AGG + chr1.2:85733049-85733068 MS.gene066439:CDS 50.0%
ACCGACGACTATGTACGAAG+AGG - chr1.2:85733379-85733398 None:intergenic 50.0%
AGAAAGAGAAGCAGCTAGCC+AGG + chr1.2:85733517-85733536 MS.gene066439:CDS 50.0%
AGAGCTGAGGAAACTCCACA+GGG + chr1.2:85733050-85733069 MS.gene066439:CDS 50.0%
AGAGGCAATAAATGCCACCG+AGG - chr1.2:85733361-85733380 None:intergenic 50.0%
ATCGTTATCCCCACCAGGTA+CGG - chr1.2:85733154-85733173 None:intergenic 50.0%
CGCTGCTGTTATAAGTGGAG+TGG - chr1.2:85731770-85731789 None:intergenic 50.0%
CTAACGAGCTCAACCAACCA+AGG + chr1.2:85732929-85732948 MS.gene066439:CDS 50.0%
CTCGGAGGACTGACAAGAAA+GGG + chr1.2:85731947-85731966 MS.gene066439:CDS 50.0%
CTCGTCGCTGCTGTTATAAG+TGG - chr1.2:85731775-85731794 None:intergenic 50.0%
CTTATAACAGCAGCGACGAG+AGG + chr1.2:85731775-85731794 MS.gene066439:CDS 50.0%
CTTCGTACATAGTCGTCGGT+CGG + chr1.2:85733379-85733398 MS.gene066439:CDS 50.0%
GCAAAGACCCTCAATTGGCT+CGG + chr1.2:85731929-85731948 MS.gene066439:CDS 50.0%
GCAGCTCAAAGAGGTGATGT+TGG + chr1.2:85730678-85730697 MS.gene066439:CDS 50.0%
GCCTCTTCGTACATAGTCGT+CGG + chr1.2:85733375-85733394 MS.gene066439:CDS 50.0%
GCTATATTCACCGTACCTGG+TGG + chr1.2:85733141-85733160 MS.gene066439:CDS 50.0%
GCTCAGCAAAGACCCTCAAT+TGG + chr1.2:85731924-85731943 MS.gene066439:CDS 50.0%
GCTGCTAGTCAAGGACATCA+TGG + chr1.2:85730957-85730976 MS.gene066439:CDS 50.0%
GCTGCTATATTCACCGTACC+TGG + chr1.2:85733138-85733157 MS.gene066439:CDS 50.0%
GGAAAACGGATCGATCAAGC+AGG + chr1.2:85730597-85730616 MS.gene066439:CDS 50.0%
GGACATCCTCTCTCGATATG+GGG + chr1.2:85732897-85732916 MS.gene066439:CDS 50.0%
GGAGAAGTGGATCCAACTCA+TGG + chr1.2:85733538-85733557 MS.gene066439:CDS 50.0%
GTCAAAGGATGGCAGCTTGT+TGG + chr1.2:85731825-85731844 MS.gene066439:CDS 50.0%
GTGGAGTTTCCTCAGCTCTT+TGG - chr1.2:85733049-85733068 None:intergenic 50.0%
TAAGTGCCCCATATCGAGAG+AGG - chr1.2:85732906-85732925 None:intergenic 50.0%
TGGCAACACAGCATTGCATG+TGG + chr1.2:85732068-85732087 MS.gene066439:CDS 50.0%
TTGAGGGTCTTTGCTGAGCA+AGG - chr1.2:85731923-85731942 None:intergenic 50.0%
TTGCATTTAGCTGCTCGTCC+GGG + chr1.2:85731877-85731896 MS.gene066439:CDS 50.0%
! ATAAGTGGAGTGGCGTTGGA+TGG - chr1.2:85731760-85731779 None:intergenic 50.0%
! GTTGGCTTCTGTCTGTACCT+CGG + chr1.2:85733341-85733360 MS.gene066439:CDS 50.0%
! GTTTTCCTCAGTTCGTCCCT+TGG - chr1.2:85732949-85732968 None:intergenic 50.0%
! TCGGAAAGTGGGTTCTGTGT+TGG - chr1.2:85730516-85730535 None:intergenic 50.0%
! TGAGTTGGATCCACTTCTCC+TGG - chr1.2:85733538-85733557 None:intergenic 50.0%
!! GGGGATAACGATGATGGATC+AGG + chr1.2:85733162-85733181 MS.gene066439:CDS 50.0%
AAAAGGGCAGAGCTGTGACG+TGG + chr1.2:85731993-85732012 MS.gene066439:CDS 55.0%
AAGCAGCTAGCCAGGAGAAG+TGG + chr1.2:85733525-85733544 MS.gene066439:CDS 55.0%
ACCAACCAAGGGACGAACTG+AGG + chr1.2:85732941-85732960 MS.gene066439:CDS 55.0%
CACCACTGTCACCGAGTTTG+TGG - chr1.2:85733091-85733110 None:intergenic 55.0%
CAGCATTGCATGTGGCAACC+AGG + chr1.2:85732076-85732095 MS.gene066439:CDS 55.0%
CAGTCCTCCGAGCCAATTGA+GGG - chr1.2:85731939-85731958 None:intergenic 55.0%
CCATCATCGTTATCCCCACC+AGG - chr1.2:85733159-85733178 None:intergenic 55.0%
CCTGGTGGGGATAACGATGA+TGG + chr1.2:85733156-85733175 MS.gene066439:CDS 55.0%
CTGAGGAAACTCCACAGGGA+AGG + chr1.2:85733054-85733073 MS.gene066439:CDS 55.0%
GCTCGGAGGACTGACAAGAA+AGG + chr1.2:85731946-85731965 MS.gene066439:CDS 55.0%
TCAGTCCTCCGAGCCAATTG+AGG - chr1.2:85731940-85731959 None:intergenic 55.0%
TCCTCAGTTCGTCCCTTGGT+TGG - chr1.2:85732945-85732964 None:intergenic 55.0%
! CACAAACTCGGTGACAGTGG+TGG + chr1.2:85733089-85733108 MS.gene066439:CDS 55.0%
! TGCCACAAACTCGGTGACAG+TGG + chr1.2:85733086-85733105 MS.gene066439:CDS 55.0%
!! AAGACCCTCAATTGGCTCGG+AGG + chr1.2:85731932-85731951 MS.gene066439:CDS 55.0%
!! GAACGAGTGGGCTGCAATTC+TGG + chr1.2:85733404-85733423 MS.gene066439:CDS 55.0%
CGTACATAGTCGTCGGTCGG+AGG + chr1.2:85733382-85733401 MS.gene066439:CDS 60.0%
GGCTTCTGTCTGTACCTCGG+TGG + chr1.2:85733344-85733363 MS.gene066439:CDS 60.0%
CGTCGGTCGGAGGAACGAGT+GGG + chr1.2:85733392-85733411 MS.gene066439:CDS 65.0%
TCGTCGGTCGGAGGAACGAG+TGG + chr1.2:85733391-85733410 MS.gene066439:CDS 65.0%
! GACGAGAGGGCACGTCGAAG+TGG + chr1.2:85731789-85731808 MS.gene066439:CDS 65.0%
GCCATCTCCGTCGTCCGCGA+CGG + chr1.2:85730548-85730567 MS.gene066439:CDS 70.0%
GCGGACGACGGAGATGGCGA+CGG - chr1.2:85730546-85730565 None:intergenic 70.0%
GACTAGAGCCGGCGCCGTCG+CGG - chr1.2:85730565-85730584 None:intergenic 75.0%
GCCGTCGCGGACGACGGAGA+TGG - chr1.2:85730552-85730571 None:intergenic 75.0%
! TCCGTCGTCCGCGACGGCGC+CGG + chr1.2:85730554-85730573 MS.gene066439:CDS 80.0%
! GCCGGCGCCGTCGCGGACGA+CGG - chr1.2:85730558-85730577 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 85730343 85733611 85730343 ID=MS.gene066439
chr1.2 mRNA 85730343 85733611 85730343 ID=MS.gene066439.t1;Parent=MS.gene066439
chr1.2 exon 85730343 85730367 85730343 ID=MS.gene066439.t1.exon1;Parent=MS.gene066439.t1
chr1.2 CDS 85730343 85730367 85730343 ID=cds.MS.gene066439.t1;Parent=MS.gene066439.t1
chr1.2 exon 85730466 85730978 85730466 ID=MS.gene066439.t1.exon2;Parent=MS.gene066439.t1
chr1.2 CDS 85730466 85730978 85730466 ID=cds.MS.gene066439.t1;Parent=MS.gene066439.t1
chr1.2 exon 85731704 85732113 85731704 ID=MS.gene066439.t1.exon3;Parent=MS.gene066439.t1
chr1.2 CDS 85731704 85732113 85731704 ID=cds.MS.gene066439.t1;Parent=MS.gene066439.t1
chr1.2 exon 85732778 85733611 85732778 ID=MS.gene066439.t1.exon4;Parent=MS.gene066439.t1
chr1.2 CDS 85732778 85733611 85732778 ID=cds.MS.gene066439.t1;Parent=MS.gene066439.t1
Gene Sequence

>MS.gene066439

ATGACCTCCAATTTCAACCTTCCAGGTTGGTTCTTCTTCTATCTGCACCCCCATCTTTTTACTTCACTGTAAACTGTAAATTTTACAGTTTTTTTTTTTACTACGCTTTTACGTTTATTGCAGGTGGAGCTCAAACTCAAAGAGATTCAGAAAAAGGAACGATGATGACACCAACACAGAACCCACTTTCCGAAATATCTCCGTCGCCATCTCCGTCGTCCGCGACGGCGCCGGCTCTAGTCCTTTCAAACTCAGGAAAACGGATCGATCAAGCAGGGAAGAAGAAGTACGTGAAGCAAGTAACGGGTCGTCACAACGACACAGAGCTTCATCTAGCAGCTCAAAGAGGTGATGTTGGTGCTGTGAGACAGATCCTTCTTGATATTGATTCTCAGATAATGGGTACTTTGAGTGGTGATGATGATGTTGATCTTAACGCTGAGATTGCTGAAGTTCGTGCTCTTGTTGTGAATGAAGAGAATGAACTTGGTGAAACTGCTTTGTTTACTGCTGCTGAAAAGGGTCATCTTGATGTTGTTAAGGAGTTGTTGAAACATTCAACTCTTCAAACTGTTTCTAAAAAGAATCGATCTGGTTTTGATCCTTTGCATATTGCTGCTAGTCAAGGACATCATGGTATGACTTCTTGTATTCAATGTCTTGTCAGATGTTCTGTTTTTATTACCTTTTTCCTTTGTTTTGATGTTGGGATTTTGGAAATTTCATTATTTTGCTTTTTGTAAAAATGGGTGAGAAAAATTTATTTTGAATGAATTGACTTTGGCTAAAATTGAGTTGAAGGTAAAACGATTTATGTTTGGGTACATTCATCTAAGCGAGTTGAACAATAAATTTGAGTTTAAAAATCAATTCTAGAATAAGAAGCTACAATTTCTAGCTTCAAGTAGAATCAGTTATGGAGACAAAATCAGGATGTTTGAGTGAGTTTTGTATTTTTTTTTTTTTTGGAACATATTCTTGGTTTCAACTTTAGTAGAAGAACACCAGAAGTATATCTGATTAAATTTGTAATTTATTAAGTTATGAGCTGACTATTGAGTATTTATCTTGCTTAAGGTATCCAATAAAGAAACTCAATTATGATGCTATTAATGGACTTTTTTTTAAGAAGCTATTAATGGAAATTTTAAGAGAAATGTTATGACACGAGTTTTAATATTATTAATCCGTAGTAGAGTTAATGCTATGTAGACAAGTCTGCCAAACATCAACGTTGTCTTATTTGGATTCCAATTGTTAGACCTTGAGTAGCTTCAATTTGTGGGTTATGGTGTTCTTGAAAATGTGAGTACTTTGCCTTCTGTTCTTTGTAGTAATCTGTTGTGAATTTTCATTTGCAGCCATTGTTCAGGTTTTACTAGATTATGACCCAAGCTTAAGCAAAACTATTGGTCCATCCAACGCCACTCCACTTATAACAGCAGCGACGAGAGGGCACGTCGAAGTGGTGAATGAACTTCTGTCAAAGGATGGCAGCTTGTTGGAAATTGCAAGATCCAATGGAAAAAATGCTTTGCATTTAGCTGCTCGTCCGGGCCATACAGAAATCGTGAAAGCCTTGCTCAGCAAAGACCCTCAATTGGCTCGGAGGACTGACAAGAAAGGGCAAACTGCATTGCATATGGCTGTAAAAGGGCAGAGCTGTGACGTGGTGAAATTGCTTCTTGATGCAGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGCAACACAGCATTGCATGTGGCAACCAGGAAAAAGCGAGTAGAGGTATGTAACATTAGCACAGCATTACAAGCAGTCAAGCACCATACAGTACATATAGTGATGAAGTAAAACAAATTAACTTACTCGAACAAATCGGGCTCACTTGACATAGCTAAATATGCCATATTTGTAGTAGTAGTATTAGTTATAGAATGATTAACAAGTCTCCAATATTGAAAACAGGTAGCTAATTATGCTACAAAAAATGCAAACGAGGCTGCTAATTTGTTATTATATTTTATATTCTGTGTCTCATATTATGTGTCTCATAATTCATTTGAATTTTTGTCTCAAATTATTTGTCATTTTATAATATCAATACAATATTTATTACTTTTTTCAAAAGTTACCTTTATTTATTTAAGTAGTTGCAAGTATAAGGTGGACAAATAATAAATGAAGTACAATGATATTTTAGTCTCAACATGTTATTTTGCTTTGAAAATTGGTATAAGTAAACCATTTTTTTAAGTAGTGTGCACATTACTAATGAAACATGTTATATGAGACAAGGGATGTAACTTCAATTTTGTCTAGAAGTTTTGGGCCTCTTGTTTTCTTTTAATTTTTATACATGAAAAACACTTGTTCCCCTAGTTACTTTTGAGCATGTCATTGTTCCTTGAATGAAAAATCTAATATTGTTGTTTCTCAATTTCTTGGACAGATAGTGAATGAGTTGTTACTCCTGCCAGACACAAACGTAAATGCATTAACACGAGACCACAAAACAGCCCTTGACATTGCTGAAAATCTTCCTCTCTCTGAAGAGTCATCAGATATAAAGGACATCCTCTCTCGATATGGGGCACTTAGAGCTAACGAGCTCAACCAACCAAGGGACGAACTGAGGAAAACGGTTACACAAATTAAGAAAGATGTTCACACACAGCTGGAACAAACCAAGAGAACCAACAAAAATGTCCACAATATATCCAAAGAGCTGAGGAAACTCCACAGGGAAGGAATTAACAATGCCACAAACTCGGTGACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACCGTACCTGGTGGGGATAACGATGATGGATCAGGAGTGGTAGCGAGTTATTCTGCTTTTAAAATTTTCTTCATATTCAATGCTATTGCGCTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCCTTGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTAGTTGAGGTGATTAACAAGCTCATGTGGTTGGCTTCTGTCTGTACCTCGGTGGCATTTATTGCCTCTTCGTACATAGTCGTCGGTCGGAGGAACGAGTGGGCTGCAATTCTGGTTACAGTTGTTGGAGGAGTGATAATATCCGGAGTTATTGGCACTATGACTTACTATGTAGTGAGGTCTAAGAGAACAAGATCCATGAGGAAGAAAGAGAAGCAGCTAGCCAGGAGAAGTGGATCCAACTCATGGCATCATTCAGAGTTCTCCAATTCCGAGGTTGATCGAATTTATGCGCTCTAA

Protein sequence

>MS.gene066439.t1

MTSNFNLPGGAQTQRDSEKGTMMTPTQNPLSEISPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDIDSQIMGTLSGDDDVDLNAEIAEVRALVVNEENELGETALFTAAEKGHLDVVKELLKHSTLQTVSKKNRSGFDPLHIAASQGHHAIVQVLLDYDPSLSKTIGPSNATPLITAATRGHVEVVNELLSKDGSLLEIARSNGKNALHLAARPGHTEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLLLPDTNVNALTRDHKTALDIAENLPLSEESSDIKDILSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNDDGSGVVASYSAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRNEWAAILVTVVGGVIISGVIGTMTYYVVRSKRTRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAL