Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066439.t1 | XP_013470475.1 | 99.2 | 593 | 5 | 0 | 1 | 593 | 1 | 593 | 4.30E-204 | 721.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066439.t1 | Q9C7A2 | 78.5 | 585 | 117 | 4 | 14 | 593 | 10 | 590 | 1.2e-143 | 511.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066439.t1 | A0A072VSV9 | 99.2 | 593 | 5 | 0 | 1 | 593 | 1 | 593 | 3.1e-204 | 721.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056229 | MS.gene066439 | 0.815433 | 9.27E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066439.t1 | MTR_1g115575 | 99.157 | 593 | 5 | 0 | 1 | 593 | 1 | 593 | 0.0 | 1201 |
| MS.gene066439.t1 | MTR_7g100430 | 73.042 | 549 | 141 | 4 | 46 | 593 | 40 | 582 | 0.0 | 791 |
| MS.gene066439.t1 | MTR_2g096190 | 46.209 | 554 | 253 | 9 | 61 | 593 | 15 | 544 | 3.25e-147 | 436 |
| MS.gene066439.t1 | MTR_4g062100 | 47.126 | 522 | 237 | 8 | 58 | 563 | 16 | 514 | 3.06e-145 | 431 |
| MS.gene066439.t1 | MTR_7g117620 | 45.421 | 546 | 255 | 7 | 61 | 593 | 31 | 546 | 9.83e-137 | 409 |
| MS.gene066439.t1 | MTR_1g032100 | 45.436 | 482 | 246 | 7 | 127 | 593 | 52 | 531 | 7.15e-128 | 386 |
| MS.gene066439.t1 | MTR_7g100390 | 42.620 | 542 | 273 | 7 | 66 | 593 | 3 | 520 | 3.77e-125 | 379 |
| MS.gene066439.t1 | MTR_8g105260 | 43.659 | 481 | 256 | 4 | 127 | 593 | 59 | 538 | 7.96e-125 | 378 |
| MS.gene066439.t1 | MTR_1g069110 | 27.021 | 433 | 263 | 12 | 170 | 559 | 18 | 440 | 1.39e-27 | 116 |
| MS.gene066439.t1 | MTR_2g101310 | 22.951 | 610 | 356 | 14 | 4 | 567 | 69 | 610 | 1.17e-26 | 115 |
| MS.gene066439.t1 | MTR_2g101310 | 25.403 | 248 | 184 | 1 | 96 | 343 | 1 | 247 | 1.37e-20 | 96.3 |
| MS.gene066439.t1 | MTR_3g105650 | 22.707 | 458 | 298 | 12 | 138 | 577 | 8 | 427 | 5.03e-25 | 108 |
| MS.gene066439.t1 | MTR_2g101320 | 28.896 | 308 | 202 | 5 | 74 | 367 | 37 | 341 | 2.31e-21 | 99.0 |
| MS.gene066439.t1 | MTR_2g101320 | 26.949 | 449 | 250 | 15 | 130 | 522 | 137 | 563 | 2.20e-20 | 95.9 |
| MS.gene066439.t1 | MTR_2g101320 | 26.471 | 238 | 173 | 2 | 107 | 343 | 11 | 247 | 5.61e-19 | 91.3 |
| MS.gene066439.t1 | MTR_2g101310 | 25.403 | 248 | 184 | 1 | 96 | 343 | 1 | 247 | 3.34e-20 | 94.4 |
| MS.gene066439.t1 | MTR_2g101310 | 21.912 | 502 | 281 | 12 | 4 | 462 | 69 | 502 | 4.77e-11 | 65.9 |
| MS.gene066439.t1 | MTR_8g467780 | 25.469 | 373 | 214 | 10 | 76 | 445 | 10 | 321 | 2.10e-19 | 91.7 |
| MS.gene066439.t1 | MTR_2g096760 | 31.707 | 205 | 121 | 4 | 134 | 322 | 14 | 215 | 2.62e-19 | 91.3 |
| MS.gene066439.t1 | MTR_8g073260 | 26.756 | 299 | 178 | 6 | 169 | 452 | 46 | 318 | 5.15e-19 | 90.5 |
| MS.gene066439.t1 | MTR_8g066670 | 23.622 | 381 | 230 | 9 | 138 | 482 | 1078 | 1433 | 1.92e-17 | 87.0 |
| MS.gene066439.t1 | MTR_1g059930 | 27.090 | 299 | 177 | 8 | 169 | 452 | 47 | 319 | 4.99e-17 | 84.3 |
| MS.gene066439.t1 | MTR_8g068990 | 24.860 | 358 | 194 | 11 | 169 | 489 | 47 | 366 | 2.21e-16 | 82.4 |
| MS.gene066439.t1 | MTR_5g085830 | 26.098 | 410 | 256 | 12 | 169 | 562 | 312 | 690 | 3.11e-16 | 82.8 |
| MS.gene066439.t1 | MTR_7g451420 | 24.611 | 321 | 206 | 6 | 138 | 445 | 12 | 309 | 3.27e-16 | 80.5 |
| MS.gene066439.t1 | MTR_5g085810 | 27.128 | 376 | 238 | 11 | 169 | 533 | 338 | 688 | 4.82e-16 | 82.0 |
| MS.gene066439.t1 | MTR_5g085480 | 24.319 | 477 | 310 | 14 | 128 | 562 | 207 | 674 | 8.53e-16 | 81.3 |
| MS.gene066439.t1 | MTR_5g085480 | 24.319 | 477 | 310 | 14 | 128 | 562 | 47 | 514 | 9.87e-16 | 80.9 |
| MS.gene066439.t1 | MTR_8g072510 | 23.653 | 427 | 245 | 13 | 169 | 556 | 45 | 429 | 1.03e-15 | 80.1 |
| MS.gene066439.t1 | MTR_4g063830 | 30.288 | 208 | 124 | 7 | 132 | 322 | 13 | 216 | 1.20e-15 | 80.1 |
| MS.gene066439.t1 | MTR_8g069880 | 22.636 | 349 | 206 | 8 | 169 | 480 | 42 | 363 | 2.22e-15 | 79.3 |
| MS.gene066439.t1 | MTR_7g099570 | 27.917 | 240 | 158 | 6 | 135 | 361 | 9 | 246 | 5.18e-15 | 78.6 |
| MS.gene066439.t1 | MTR_7g021090 | 23.099 | 355 | 208 | 9 | 169 | 488 | 44 | 368 | 2.61e-14 | 75.5 |
| MS.gene066439.t1 | MTR_8g040930 | 23.684 | 342 | 198 | 10 | 177 | 480 | 2 | 318 | 3.66e-14 | 75.1 |
| MS.gene066439.t1 | MTR_8g041240 | 23.684 | 342 | 198 | 10 | 177 | 480 | 2 | 318 | 3.66e-14 | 75.1 |
| MS.gene066439.t1 | MTR_8g062410 | 25.000 | 336 | 200 | 10 | 138 | 453 | 13 | 316 | 8.01e-14 | 74.3 |
| MS.gene066439.t1 | MTR_5g043640 | 33.708 | 178 | 111 | 5 | 132 | 306 | 20 | 193 | 1.33e-13 | 71.2 |
| MS.gene066439.t1 | MTR_3g016210 | 24.917 | 301 | 178 | 9 | 169 | 445 | 45 | 321 | 3.56e-13 | 72.4 |
| MS.gene066439.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 262 | 443 | 3.64e-13 | 72.4 |
| MS.gene066439.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 288 | 469 | 3.80e-13 | 72.4 |
| MS.gene066439.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 315 | 496 | 4.56e-13 | 72.4 |
| MS.gene066439.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 290 | 471 | 4.64e-13 | 72.0 |
| MS.gene066439.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 147 | 328 | 5.07e-13 | 71.2 |
| MS.gene066439.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 210 | 391 | 5.09e-13 | 71.6 |
| MS.gene066439.t1 | MTR_8g039620 | 21.809 | 376 | 234 | 9 | 169 | 509 | 49 | 399 | 6.06e-13 | 71.6 |
| MS.gene066439.t1 | MTR_8g080080 | 26.183 | 317 | 194 | 9 | 72 | 352 | 77 | 389 | 8.19e-13 | 71.6 |
| MS.gene066439.t1 | MTR_1g112830 | 29.952 | 207 | 137 | 5 | 120 | 322 | 120 | 322 | 1.45e-12 | 70.9 |
| MS.gene066439.t1 | MTR_3g085830 | 28.342 | 187 | 125 | 3 | 131 | 309 | 105 | 290 | 2.05e-12 | 70.5 |
| MS.gene066439.t1 | MTR_3g085830 | 27.208 | 283 | 173 | 9 | 100 | 355 | 108 | 384 | 3.83e-12 | 69.7 |
| MS.gene066439.t1 | MTR_5g028190 | 25.284 | 352 | 185 | 11 | 213 | 544 | 213 | 506 | 1.57e-11 | 67.4 |
| MS.gene066439.t1 | MTR_6g027840 | 27.935 | 247 | 158 | 7 | 90 | 323 | 125 | 364 | 2.13e-11 | 67.0 |
| MS.gene066439.t1 | MTR_4g116160 | 30.319 | 188 | 127 | 4 | 135 | 322 | 40 | 223 | 2.69e-11 | 67.0 |
| MS.gene066439.t1 | MTR_4g116160 | 30.319 | 188 | 127 | 4 | 135 | 322 | 40 | 223 | 3.40e-11 | 66.2 |
| MS.gene066439.t1 | MTR_4g129470 | 30.392 | 204 | 98 | 6 | 128 | 294 | 9 | 205 | 4.01e-11 | 66.2 |
| MS.gene066439.t1 | MTR_4g021880 | 25.806 | 217 | 145 | 5 | 121 | 322 | 86 | 301 | 5.80e-11 | 65.1 |
| MS.gene066439.t1 | MTR_1g089180 | 28.947 | 228 | 134 | 8 | 114 | 317 | 198 | 421 | 7.48e-11 | 65.1 |
| MS.gene066439.t1 | MTR_2g438740 | 21.257 | 541 | 333 | 15 | 53 | 545 | 57 | 552 | 8.22e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066439.t1 | AT3G12360 | 80.684 | 585 | 104 | 4 | 14 | 593 | 10 | 590 | 0.0 | 954 |
| MS.gene066439.t1 | AT3G12360 | 80.895 | 581 | 102 | 4 | 18 | 593 | 2 | 578 | 0.0 | 950 |
| MS.gene066439.t1 | AT3G09550 | 71.502 | 586 | 148 | 3 | 24 | 593 | 25 | 607 | 0.0 | 833 |
| MS.gene066439.t1 | AT3G09550 | 71.502 | 586 | 148 | 3 | 24 | 593 | 25 | 607 | 0.0 | 833 |
| MS.gene066439.t1 | AT3G09550 | 71.502 | 586 | 148 | 3 | 24 | 593 | 32 | 614 | 0.0 | 832 |
| MS.gene066439.t1 | AT2G31820 | 43.534 | 549 | 271 | 7 | 60 | 593 | 138 | 662 | 7.75e-138 | 416 |
| MS.gene066439.t1 | AT1G05640 | 44.404 | 554 | 270 | 7 | 56 | 593 | 96 | 627 | 7.37e-136 | 410 |
| MS.gene066439.t1 | AT5G60070 | 46.595 | 558 | 244 | 13 | 61 | 593 | 20 | 548 | 3.29e-135 | 405 |
| MS.gene066439.t1 | AT2G01680 | 43.110 | 508 | 273 | 8 | 99 | 593 | 28 | 532 | 2.18e-129 | 390 |
| MS.gene066439.t1 | AT1G07710 | 44.565 | 552 | 264 | 5 | 61 | 593 | 15 | 543 | 2.36e-129 | 390 |
| MS.gene066439.t1 | AT1G07710 | 44.565 | 552 | 264 | 5 | 61 | 593 | 15 | 543 | 2.36e-129 | 390 |
| MS.gene066439.t1 | AT5G02620 | 43.774 | 514 | 248 | 7 | 61 | 556 | 5 | 495 | 4.11e-124 | 376 |
| MS.gene066439.t1 | AT5G02620 | 43.774 | 514 | 248 | 7 | 61 | 556 | 5 | 495 | 4.11e-124 | 376 |
| MS.gene066439.t1 | AT5G02620 | 43.774 | 514 | 248 | 7 | 61 | 556 | 5 | 495 | 4.11e-124 | 376 |
| MS.gene066439.t1 | AT5G02620 | 41.899 | 537 | 248 | 8 | 61 | 556 | 5 | 518 | 1.12e-118 | 363 |
| MS.gene066439.t1 | AT5G02620 | 41.899 | 537 | 248 | 8 | 61 | 556 | 5 | 518 | 1.12e-118 | 363 |
| MS.gene066439.t1 | AT1G10340 | 25.202 | 496 | 309 | 12 | 111 | 552 | 51 | 538 | 2.23e-34 | 138 |
| MS.gene066439.t1 | AT5G54710 | 27.308 | 520 | 284 | 17 | 68 | 552 | 97 | 557 | 1.47e-33 | 135 |
| MS.gene066439.t1 | AT5G54710 | 27.308 | 520 | 284 | 17 | 68 | 552 | 142 | 602 | 2.30e-33 | 135 |
| MS.gene066439.t1 | AT1G10340 | 24.593 | 492 | 313 | 11 | 111 | 552 | 51 | 534 | 2.36e-33 | 135 |
| MS.gene066439.t1 | AT1G34050 | 26.145 | 524 | 294 | 15 | 108 | 554 | 28 | 535 | 6.25e-33 | 134 |
| MS.gene066439.t1 | AT2G24600 | 26.892 | 502 | 290 | 18 | 72 | 538 | 70 | 529 | 3.52e-32 | 131 |
| MS.gene066439.t1 | AT2G24600 | 26.892 | 502 | 290 | 18 | 72 | 538 | 70 | 529 | 3.52e-32 | 131 |
| MS.gene066439.t1 | AT4G03500 | 26.047 | 549 | 280 | 17 | 58 | 522 | 54 | 560 | 2.27e-30 | 126 |
| MS.gene066439.t1 | AT4G03500 | 26.047 | 549 | 280 | 17 | 58 | 522 | 54 | 560 | 2.27e-30 | 126 |
| MS.gene066439.t1 | AT4G03500 | 26.047 | 549 | 280 | 17 | 58 | 522 | 77 | 583 | 2.41e-30 | 126 |
| MS.gene066439.t1 | AT1G03670 | 25.581 | 516 | 328 | 9 | 74 | 562 | 107 | 593 | 2.54e-26 | 114 |
| MS.gene066439.t1 | AT4G03490 | 27.674 | 430 | 267 | 12 | 133 | 551 | 180 | 576 | 5.93e-25 | 110 |
| MS.gene066439.t1 | AT4G03490 | 27.830 | 424 | 262 | 12 | 133 | 545 | 170 | 560 | 7.88e-25 | 109 |
| MS.gene066439.t1 | AT4G03490 | 27.830 | 424 | 262 | 12 | 133 | 545 | 180 | 570 | 8.09e-25 | 109 |
| MS.gene066439.t1 | AT4G03460 | 26.406 | 409 | 256 | 8 | 128 | 522 | 158 | 535 | 8.30e-24 | 106 |
| MS.gene066439.t1 | AT4G03460 | 26.406 | 409 | 256 | 8 | 128 | 522 | 190 | 567 | 8.97e-24 | 106 |
| MS.gene066439.t1 | AT4G03490 | 24.915 | 586 | 332 | 18 | 65 | 574 | 9 | 562 | 1.02e-23 | 106 |
| MS.gene066439.t1 | AT5G50140 | 22.913 | 515 | 297 | 16 | 126 | 563 | 22 | 513 | 1.04e-23 | 105 |
| MS.gene066439.t1 | AT4G03490 | 25.277 | 542 | 318 | 15 | 65 | 551 | 19 | 528 | 2.41e-23 | 105 |
| MS.gene066439.t1 | AT5G54700 | 28.435 | 313 | 159 | 9 | 223 | 523 | 20 | 279 | 1.38e-22 | 99.8 |
| MS.gene066439.t1 | AT4G10720 | 24.096 | 415 | 258 | 12 | 169 | 559 | 40 | 421 | 3.30e-22 | 100 |
| MS.gene066439.t1 | AT5G54700 | 27.809 | 356 | 182 | 12 | 202 | 523 | 2 | 316 | 6.72e-22 | 99.8 |
| MS.gene066439.t1 | AT4G10720 | 25.076 | 327 | 210 | 6 | 169 | 477 | 40 | 349 | 1.95e-21 | 97.4 |
| MS.gene066439.t1 | AT4G14390 | 24.722 | 449 | 281 | 11 | 128 | 556 | 226 | 637 | 2.14e-20 | 95.9 |
| MS.gene066439.t1 | AT4G14390 | 24.722 | 449 | 281 | 11 | 128 | 556 | 245 | 656 | 2.62e-20 | 95.5 |
| MS.gene066439.t1 | AT4G14390 | 24.889 | 450 | 280 | 12 | 128 | 556 | 245 | 657 | 2.97e-20 | 95.5 |
| MS.gene066439.t1 | AT4G03480 | 26.076 | 395 | 232 | 9 | 118 | 482 | 295 | 659 | 1.56e-19 | 93.2 |
| MS.gene066439.t1 | AT4G03480 | 26.076 | 395 | 232 | 9 | 118 | 482 | 292 | 656 | 1.64e-19 | 93.2 |
| MS.gene066439.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
| MS.gene066439.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
| MS.gene066439.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
| MS.gene066439.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
| MS.gene066439.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
| MS.gene066439.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
| MS.gene066439.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
| MS.gene066439.t1 | AT5G15500 | 23.427 | 461 | 288 | 15 | 130 | 559 | 1 | 427 | 2.69e-18 | 88.2 |
| MS.gene066439.t1 | AT2G24600 | 26.420 | 405 | 232 | 14 | 72 | 450 | 70 | 434 | 1.74e-17 | 86.3 |
| MS.gene066439.t1 | AT2G24600 | 26.420 | 405 | 232 | 14 | 72 | 450 | 70 | 434 | 1.74e-17 | 86.3 |
| MS.gene066439.t1 | AT4G03450 | 24.505 | 555 | 306 | 17 | 58 | 528 | 45 | 570 | 1.80e-17 | 86.7 |
| MS.gene066439.t1 | AT5G51160 | 25.000 | 352 | 198 | 8 | 157 | 478 | 38 | 353 | 2.37e-17 | 85.5 |
| MS.gene066439.t1 | AT4G03450 | 24.505 | 555 | 306 | 17 | 58 | 528 | 45 | 570 | 5.25e-17 | 85.1 |
| MS.gene066439.t1 | AT4G03470 | 26.044 | 503 | 294 | 18 | 77 | 542 | 157 | 618 | 1.33e-16 | 84.0 |
| MS.gene066439.t1 | AT3G04140 | 27.622 | 286 | 160 | 8 | 100 | 342 | 105 | 386 | 2.91e-16 | 82.8 |
| MS.gene066439.t1 | AT1G14500 | 22.769 | 325 | 215 | 5 | 169 | 475 | 40 | 346 | 3.82e-15 | 78.6 |
| MS.gene066439.t1 | AT2G03430 | 34.659 | 176 | 106 | 5 | 135 | 306 | 16 | 186 | 8.47e-15 | 74.7 |
| MS.gene066439.t1 | AT4G14390 | 26.748 | 329 | 195 | 8 | 128 | 443 | 226 | 521 | 4.90e-13 | 72.4 |
| MS.gene066439.t1 | AT5G54620 | 29.570 | 186 | 119 | 2 | 169 | 342 | 40 | 225 | 8.05e-13 | 71.2 |
| MS.gene066439.t1 | AT5G54610 | 27.717 | 184 | 123 | 2 | 169 | 342 | 40 | 223 | 8.10e-13 | 71.2 |
| MS.gene066439.t1 | AT3G18670 | 23.111 | 450 | 296 | 12 | 123 | 530 | 113 | 554 | 1.08e-12 | 71.2 |
| MS.gene066439.t1 | AT2G28840 | 27.273 | 209 | 129 | 7 | 132 | 322 | 12 | 215 | 2.01e-12 | 70.1 |
| MS.gene066439.t1 | AT4G03440 | 23.126 | 467 | 308 | 12 | 104 | 550 | 258 | 693 | 3.93e-12 | 69.7 |
| MS.gene066439.t1 | AT4G03440 | 23.126 | 467 | 308 | 12 | 104 | 550 | 251 | 686 | 4.34e-12 | 69.7 |
| MS.gene066439.t1 | AT4G03440 | 23.126 | 467 | 308 | 12 | 104 | 550 | 251 | 686 | 4.34e-12 | 69.7 |
| MS.gene066439.t1 | AT4G14400 | 23.242 | 512 | 310 | 20 | 75 | 538 | 71 | 547 | 3.99e-11 | 66.2 |
| MS.gene066439.t1 | AT4G14400 | 23.242 | 512 | 310 | 20 | 75 | 538 | 71 | 547 | 3.99e-11 | 66.2 |
| MS.gene066439.t1 | AT3G18670 | 23.684 | 304 | 183 | 7 | 236 | 530 | 346 | 609 | 4.68e-11 | 66.2 |
| MS.gene066439.t1 | AT4G14400 | 23.242 | 512 | 310 | 20 | 75 | 538 | 137 | 613 | 5.65e-11 | 65.9 |
Find 137 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGCATATGGCTGTAAA+AGG | 0.222840 | 1.2:+85731976 | MS.gene066439:CDS |
| TGATATTGATTCTCAGATAA+TGG | 0.227356 | 1.2:+85730722 | MS.gene066439:CDS |
| GTGGAGTTTCCTCAGCTCTT+TGG | 0.250605 | 1.2:-85733046 | None:intergenic |
| GTTATGCTTCCTGACAAATT+TGG | 0.259995 | 1.2:+85732048 | MS.gene066439:CDS |
| GAACGAGTGGGCTGCAATTC+TGG | 0.267500 | 1.2:+85733404 | MS.gene066439:CDS |
| ACCTCCAATTTCAACCTTCC+AGG | 0.283929 | 1.2:+85730346 | MS.gene066439:CDS |
| ACTCAAAGAGATTCAGAAAA+AGG | 0.285730 | 1.2:+85730477 | MS.gene066439:CDS |
| AAGGACATCCTCTCTCGATA+TGG | 0.290107 | 1.2:+85732895 | MS.gene066439:CDS |
| CCAACCTGGAAGGTTGAAAT+TGG | 0.303178 | 1.2:-85730350 | None:intergenic |
| TTCATTTGCAGCCATTGTTC+AGG | 0.330505 | 1.2:+85731693 | MS.gene066439:intron |
| CTGCTTCTCTTTCTTCCTCA+TGG | 0.331730 | 1.2:-85733508 | None:intergenic |
| GCAATTCTGGTTACAGTTGT+TGG | 0.335512 | 1.2:+85733417 | MS.gene066439:CDS |
| GATATTGATTCTCAGATAAT+GGG | 0.350929 | 1.2:+85730723 | MS.gene066439:CDS |
| AATTCGATCAACCTCGGAAT+TGG | 0.351942 | 1.2:-85733577 | None:intergenic |
| TGAAGAGTCATCAGATATAA+AGG | 0.366092 | 1.2:+85732876 | MS.gene066439:CDS |
| TTTGTTTACTGCTGCTGAAA+AGG | 0.377535 | 1.2:+85730842 | MS.gene066439:CDS |
| AGATGGCGACGGAGATATTT+CGG | 0.380641 | 1.2:-85730532 | None:intergenic |
| GTTCAAATTACCCTTGTTAG+AGG | 0.385400 | 1.2:+85733267 | MS.gene066439:CDS |
| GTGATAATATCCGGAGTTAT+TGG | 0.388823 | 1.2:+85733444 | MS.gene066439:CDS |
| GTGAAACTAAAGCAGAGAAA+AGG | 0.392404 | 1.2:+85733289 | MS.gene066439:CDS |
| TTTGCATTTAGCTGCTCGTC+CGG | 0.403120 | 1.2:+85731876 | MS.gene066439:CDS |
| GTCAAAGGATGGCAGCTTGT+TGG | 0.404723 | 1.2:+85731825 | MS.gene066439:CDS |
| GGGTCATCTTGATGTTGTTA+AGG | 0.408314 | 1.2:+85730863 | MS.gene066439:CDS |
| AGAAAGAGAAGCAGCTAGCC+AGG | 0.411228 | 1.2:+85733517 | MS.gene066439:CDS |
| AGGACATCCTCTCTCGATAT+GGG | 0.415929 | 1.2:+85732896 | MS.gene066439:CDS |
| CACCACTGTCACCGAGTTTG+TGG | 0.435710 | 1.2:-85733088 | None:intergenic |
| CTCGTCGCTGCTGTTATAAG+TGG | 0.455896 | 1.2:-85731772 | None:intergenic |
| TCCGTCGTCCGCGACGGCGC+CGG | 0.456322 | 1.2:+85730554 | MS.gene066439:CDS |
| AGGCTTTCACGATTTCTGTA+TGG | 0.466846 | 1.2:-85731900 | None:intergenic |
| TTGCATTTAGCTGCTCGTCC+GGG | 0.469773 | 1.2:+85731877 | MS.gene066439:CDS |
| GCTGCTATATTCACCGTACC+TGG | 0.472210 | 1.2:+85733138 | MS.gene066439:CDS |
| TCCTCAGTTCGTCCCTTGGT+TGG | 0.473921 | 1.2:-85732942 | None:intergenic |
| CATTTACGTTTGTGTCTGGC+AGG | 0.475438 | 1.2:-85732798 | None:intergenic |
| TTGTTTACTGCTGCTGAAAA+GGG | 0.479987 | 1.2:+85730843 | MS.gene066439:CDS |
| GCTCAGCAAAGACCCTCAAT+TGG | 0.481998 | 1.2:+85731924 | MS.gene066439:CDS |
| CTTTAGTTTCACCTCTAACA+AGG | 0.482809 | 1.2:-85733278 | None:intergenic |
| CCAAGCTTAAGCAAAACTAT+TGG | 0.486154 | 1.2:+85731733 | MS.gene066439:CDS |
| TGAGTTGGATCCACTTCTCC+TGG | 0.491866 | 1.2:-85733535 | None:intergenic |
| GGGGATAACGATGATGGATC+AGG | 0.492044 | 1.2:+85733162 | MS.gene066439:CDS |
| CAGTCCTCCGAGCCAATTGA+GGG | 0.492228 | 1.2:-85731936 | None:intergenic |
| TCCTTTCAAACTCAGGAAAA+CGG | 0.494021 | 1.2:+85730583 | MS.gene066439:CDS |
| TGAAACTAAAGCAGAGAAAA+GGG | 0.501105 | 1.2:+85733290 | MS.gene066439:CDS |
| AGGGCAAACTGCATTGCATA+TGG | 0.501695 | 1.2:+85731966 | MS.gene066439:CDS |
| TCAGCTCTTTGGATATATTG+TGG | 0.502735 | 1.2:-85733035 | None:intergenic |
| ATCGTTATCCCCACCAGGTA+CGG | 0.503271 | 1.2:-85733151 | None:intergenic |
| TTGAGGGTCTTTGCTGAGCA+AGG | 0.503619 | 1.2:-85731920 | None:intergenic |
| AATGCATTTACGTTTGTGTC+TGG | 0.503703 | 1.2:-85732802 | None:intergenic |
| TTGGAAATTGCAAGATCCAA+TGG | 0.508338 | 1.2:+85731844 | MS.gene066439:CDS |
| AAGTACGTGAAGCAAGTAAC+GGG | 0.508570 | 1.2:+85730627 | MS.gene066439:CDS |
| GCTCGGAGGACTGACAAGAA+AGG | 0.509842 | 1.2:+85731946 | MS.gene066439:CDS |
| GACGGAGATATTTCGGAAAG+TGG | 0.514348 | 1.2:-85730525 | None:intergenic |
| CTCGGAGGACTGACAAGAAA+GGG | 0.519611 | 1.2:+85731947 | MS.gene066439:CDS |
| TTCACGATTTCTGTATGGCC+CGG | 0.525638 | 1.2:-85731895 | None:intergenic |
| GTTGGAGGAGTGATAATATC+CGG | 0.527167 | 1.2:+85733435 | MS.gene066439:CDS |
| GCCGGCGCCGTCGCGGACGA+CGG | 0.529146 | 1.2:-85730555 | None:intergenic |
| CATTGCATATGGCTGTAAAA+GGG | 0.531587 | 1.2:+85731977 | MS.gene066439:CDS |
| GAAAGATGTTCACACACAGC+TGG | 0.535788 | 1.2:+85732984 | MS.gene066439:CDS |
| CCTGGTGGGGATAACGATGA+TGG | 0.535860 | 1.2:+85733156 | MS.gene066439:CDS |
| GCCATCTCCGTCGTCCGCGA+CGG | 0.536247 | 1.2:+85730548 | MS.gene066439:CDS |
| GCTGTGTTGCCAAATTTGTC+AGG | 0.537540 | 1.2:-85732057 | None:intergenic |
| GGAAAACGGATCGATCAAGC+AGG | 0.537963 | 1.2:+85730597 | MS.gene066439:CDS |
| CTATATTCACCGTACCTGGT+GGG | 0.538227 | 1.2:+85733142 | MS.gene066439:CDS |
| CAGCATTGCATGTGGCAACC+AGG | 0.541967 | 1.2:+85732076 | MS.gene066439:CDS |
| AAGCAGCTAGCCAGGAGAAG+TGG | 0.542236 | 1.2:+85733525 | MS.gene066439:CDS |
| TCAGTCCTCCGAGCCAATTG+AGG | 0.545108 | 1.2:-85731937 | None:intergenic |
| TCGGAAAGTGGGTTCTGTGT+TGG | 0.547229 | 1.2:-85730513 | None:intergenic |
| GACTAGAGCCGGCGCCGTCG+CGG | 0.548417 | 1.2:-85730562 | None:intergenic |
| TTGCATATTGCTGCTAGTCA+AGG | 0.549825 | 1.2:+85730948 | MS.gene066439:CDS |
| CAGATAATGGGTACTTTGAG+TGG | 0.549949 | 1.2:+85730735 | MS.gene066439:CDS |
| CTCTGAATGATGCCATGAGT+TGG | 0.551504 | 1.2:-85733550 | None:intergenic |
| AAGAGCTGAGGAAACTCCAC+AGG | 0.552962 | 1.2:+85733049 | MS.gene066439:CDS |
| ATTCTGGTTACAGTTGTTGG+AGG | 0.554005 | 1.2:+85733420 | MS.gene066439:CDS |
| GATTAACAAGCTCATGTGGT+TGG | 0.554304 | 1.2:+85733323 | MS.gene066439:CDS |
| AAGGGACGAACTGAGGAAAA+CGG | 0.554349 | 1.2:+85732948 | MS.gene066439:CDS |
| ACCTGGAAGGTTGAAATTGG+AGG | 0.558297 | 1.2:-85730347 | None:intergenic |
| GCCGTCGCGGACGACGGAGA+TGG | 0.559929 | 1.2:-85730549 | None:intergenic |
| CCATCATCGTTATCCCCACC+AGG | 0.564948 | 1.2:-85733156 | None:intergenic |
| TTTAGTTTCACCTCTAACAA+GGG | 0.565107 | 1.2:-85733277 | None:intergenic |
| GAGTTTGAAAGGACTAGAGC+CGG | 0.567456 | 1.2:-85730573 | None:intergenic |
| GCAAAGACCCTCAATTGGCT+CGG | 0.569896 | 1.2:+85731929 | MS.gene066439:CDS |
| GCTCTAGTCCTTTCAAACTC+AGG | 0.572097 | 1.2:+85730576 | MS.gene066439:CDS |
| CATTGTTAATTCCTTCCCTG+TGG | 0.572226 | 1.2:-85733065 | None:intergenic |
| AGCAGAGAAAAGGGTAGTTG+AGG | 0.573019 | 1.2:+85733299 | MS.gene066439:CDS |
| TCGTCGGTCGGAGGAACGAG+TGG | 0.574175 | 1.2:+85733391 | MS.gene066439:CDS |
| CGCTGCTGTTATAAGTGGAG+TGG | 0.575162 | 1.2:-85731767 | None:intergenic |
| GCTGCTAGTCAAGGACATCA+TGG | 0.575482 | 1.2:+85730957 | MS.gene066439:CDS |
| ATAAGTGGAGTGGCGTTGGA+TGG | 0.578501 | 1.2:-85731757 | None:intergenic |
| GCAGCTCAAAGAGGTGATGT+TGG | 0.583391 | 1.2:+85730678 | MS.gene066439:CDS |
| GTGAATGAAGAGAATGAACT+TGG | 0.587406 | 1.2:+85730810 | MS.gene066439:CDS |
| TCTGAGAATCAATATCAAGA+AGG | 0.587872 | 1.2:-85730716 | None:intergenic |
| ACGGAGATATTTCGGAAAGT+GGG | 0.587917 | 1.2:-85730524 | None:intergenic |
| TGTTATAAGTGGAGTGGCGT+TGG | 0.592828 | 1.2:-85731761 | None:intergenic |
| TTCAGAGTTCTCCAATTCCG+AGG | 0.592884 | 1.2:+85733566 | MS.gene066439:CDS |
| GCTATATTCACCGTACCTGG+TGG | 0.598478 | 1.2:+85733141 | MS.gene066439:CDS |
| ATCTAGTAAAACCTGAACAA+TGG | 0.600510 | 1.2:-85731704 | None:intergenic |
| GCCTCTTCGTACATAGTCGT+CGG | 0.600824 | 1.2:+85733375 | MS.gene066439:CDS |
| CGCATAAATTCGATCAACCT+CGG | 0.601587 | 1.2:-85733583 | None:intergenic |
| CGTACATAGTCGTCGGTCGG+AGG | 0.602499 | 1.2:+85733382 | MS.gene066439:CDS |
| GTTGGCTTCTGTCTGTACCT+CGG | 0.602568 | 1.2:+85733341 | MS.gene066439:CDS |
| CTGAGGAAACTCCACAGGGA+AGG | 0.603249 | 1.2:+85733054 | MS.gene066439:CDS |
| TATATTCACCGTACCTGGTG+GGG | 0.603908 | 1.2:+85733143 | MS.gene066439:CDS |
| GAAGTACGTGAAGCAAGTAA+CGG | 0.604371 | 1.2:+85730626 | MS.gene066439:CDS |
| GGAGAAGTGGATCCAACTCA+TGG | 0.605497 | 1.2:+85733538 | MS.gene066439:CDS |
| AGAAGAAGAACCAACCTGGA+AGG | 0.609441 | 1.2:-85730360 | None:intergenic |
| GACGAGAGGGCACGTCGAAG+TGG | 0.609993 | 1.2:+85731789 | MS.gene066439:CDS |
| GGTGAATGAACTTCTGTCAA+AGG | 0.612992 | 1.2:+85731810 | MS.gene066439:CDS |
| TTATAACAGCAGCGACGAGA+GGG | 0.613377 | 1.2:+85731776 | MS.gene066439:CDS |
| AATGAACTTCTGTCAAAGGA+TGG | 0.613527 | 1.2:+85731814 | MS.gene066439:CDS |
| TCTGATGACTCTTCAGAGAG+AGG | 0.615975 | 1.2:-85732868 | None:intergenic |
| AATTAACAATGCCACAAACT+CGG | 0.616650 | 1.2:+85733077 | MS.gene066439:CDS |
| CGTCGGTCGGAGGAACGAGT+GGG | 0.619749 | 1.2:+85733392 | MS.gene066439:CDS |
| ACCAACCAAGGGACGAACTG+AGG | 0.620407 | 1.2:+85732941 | MS.gene066439:CDS |
| CTAACGAGCTCAACCAACCA+AGG | 0.621035 | 1.2:+85732929 | MS.gene066439:CDS |
| CTTCATCTAGCAGCTCAAAG+AGG | 0.623399 | 1.2:+85730669 | MS.gene066439:CDS |
| CTTCGTACATAGTCGTCGGT+CGG | 0.624785 | 1.2:+85733379 | MS.gene066439:CDS |
| CTTATAACAGCAGCGACGAG+AGG | 0.631608 | 1.2:+85731775 | MS.gene066439:CDS |
| TGCCACAAACTCGGTGACAG+TGG | 0.632510 | 1.2:+85733086 | MS.gene066439:CDS |
| AGTCATAGTGCCAATAACTC+CGG | 0.636725 | 1.2:-85733454 | None:intergenic |
| TGGCAACACAGCATTGCATG+TGG | 0.637663 | 1.2:+85732068 | MS.gene066439:CDS |
| GGACATCCTCTCTCGATATG+GGG | 0.638757 | 1.2:+85732897 | MS.gene066439:CDS |
| TGACTAGCAGCAATATGCAA+AGG | 0.639675 | 1.2:-85730945 | None:intergenic |
| ACAATATATCCAAAGAGCTG+AGG | 0.644642 | 1.2:+85733037 | MS.gene066439:CDS |
| AAGACCCTCAATTGGCTCGG+AGG | 0.651684 | 1.2:+85731932 | MS.gene066439:CDS |
| GCGGACGACGGAGATGGCGA+CGG | 0.652416 | 1.2:-85730543 | None:intergenic |
| GGCTTCTGTCTGTACCTCGG+TGG | 0.655940 | 1.2:+85733344 | MS.gene066439:CDS |
| GAAAACGGATCGATCAAGCA+GGG | 0.663000 | 1.2:+85730598 | MS.gene066439:CDS |
| TAACGATGATGGATCAGGAG+TGG | 0.663853 | 1.2:+85733167 | MS.gene066439:CDS |
| TAAGTGCCCCATATCGAGAG+AGG | 0.665007 | 1.2:-85732903 | None:intergenic |
| AGGTGATTAACAAGCTCATG+TGG | 0.671742 | 1.2:+85733319 | MS.gene066439:CDS |
| ACCGACGACTATGTACGAAG+AGG | 0.681066 | 1.2:-85733376 | None:intergenic |
| CACAAACTCGGTGACAGTGG+TGG | 0.691648 | 1.2:+85733089 | MS.gene066439:CDS |
| TAACGAGCTCAACCAACCAA+GGG | 0.693605 | 1.2:+85732930 | MS.gene066439:CDS |
| CTATGACTTACTATGTAGTG+AGG | 0.708286 | 1.2:+85733469 | MS.gene066439:CDS |
| CTAAGAGAACAAGATCCATG+AGG | 0.720939 | 1.2:+85733493 | MS.gene066439:CDS |
| AGAGCTGAGGAAACTCCACA+GGG | 0.730372 | 1.2:+85733050 | MS.gene066439:CDS |
| AAAAGGGCAGAGCTGTGACG+TGG | 0.742175 | 1.2:+85731993 | MS.gene066439:CDS |
| AGAGGCAATAAATGCCACCG+AGG | 0.784742 | 1.2:-85733358 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAAAGAAAACAAG+AGG | - | chr1.2:85732661-85732680 | None:intergenic | 15.0% |
| !!! | AATATTAGATTTTTCATTCA+AGG | - | chr1.2:85732734-85732753 | None:intergenic | 15.0% |
| !!! | ATTTTGCTTTTTGTAAAAAT+GGG | + | chr1.2:85731070-85731089 | MS.gene066439:intron | 15.0% |
| !!! | TATTTTGCTTTTTGTAAAAA+TGG | + | chr1.2:85731069-85731088 | MS.gene066439:intron | 15.0% |
| !!! | TTTTTTTAAGAAGCTATTAA+TGG | + | chr1.2:85731462-85731481 | MS.gene066439:intron | 15.0% |
| !! | AATTTAATCAGATATACTTC+TGG | - | chr1.2:85731350-85731369 | None:intergenic | 20.0% |
| !! | GCAACTACTTAAATAAATAA+AGG | - | chr1.2:85732463-85732482 | None:intergenic | 20.0% |
| !! | TAATACTACTACTACAAATA+TGG | - | chr1.2:85732235-85732254 | None:intergenic | 20.0% |
| !! | TCATAATTGAGTTTCTTTAT+TGG | - | chr1.2:85731427-85731446 | None:intergenic | 20.0% |
| !!! | TATTTTGAATGAATTGACTT+TGG | + | chr1.2:85731104-85731123 | MS.gene066439:intron | 20.0% |
| !!! | TGTTATTTTGCTTTGAAAAT+TGG | + | chr1.2:85732537-85732556 | MS.gene066439:intron | 20.0% |
| !!! | TTTTTTTTGGAACATATTCT+TGG | + | chr1.2:85731302-85731321 | MS.gene066439:intron | 20.0% |
| ! | AAACATGTTATATGAGACAA+GGG | + | chr1.2:85732603-85732622 | MS.gene066439:intron | 25.0% |
| ! | AACATCAAAACAAAGGAAAA+AGG | - | chr1.2:85731030-85731049 | None:intergenic | 25.0% |
| ! | AAGGTAAAACGATTTATGTT+TGG | + | chr1.2:85731141-85731160 | MS.gene066439:intron | 25.0% |
| ! | AGGTAAAACGATTTATGTTT+GGG | + | chr1.2:85731142-85731161 | MS.gene066439:intron | 25.0% |
| ! | ATTAACTTACTCGAACAAAT+CGG | + | chr1.2:85732185-85732204 | MS.gene066439:intron | 25.0% |
| ! | CTCAATTATGATGCTATTAA+TGG | + | chr1.2:85731436-85731455 | MS.gene066439:intron | 25.0% |
| ! | TTACAGTGAAGTAAAAAGAT+GGG | - | chr1.2:85730395-85730414 | None:intergenic | 25.0% |
| ! | TTGAGTATTTATCTTGCTTA+AGG | + | chr1.2:85731398-85731417 | MS.gene066439:intron | 25.0% |
| ! | TTTAAGTAGTTGCAAGTATA+AGG | + | chr1.2:85732470-85732489 | MS.gene066439:intron | 25.0% |
| ! | TTTACAGTGAAGTAAAAAGA+TGG | - | chr1.2:85730396-85730415 | None:intergenic | 25.0% |
| !! | CAATTTTGTCTAGAAGTTTT+GGG | + | chr1.2:85732635-85732654 | MS.gene066439:intron | 25.0% |
| !! | TATATTGTGGACATTTTTGT+TGG | - | chr1.2:85733025-85733044 | None:intergenic | 25.0% |
| !! | TCAATTTTGTCTAGAAGTTT+TGG | + | chr1.2:85732634-85732653 | MS.gene066439:intron | 25.0% |
| !!! | ATTGTTGTTTCTCAATTTCT+TGG | + | chr1.2:85732751-85732770 | MS.gene066439:intron | 25.0% |
| !!! | GATATTGATTCTCAGATAAT+GGG | + | chr1.2:85730723-85730742 | MS.gene066439:CDS | 25.0% |
| !!! | TGATATTGATTCTCAGATAA+TGG | + | chr1.2:85730722-85730741 | MS.gene066439:CDS | 25.0% |
| !!! | TTTTCCTTTGTTTTGATGTT+GGG | + | chr1.2:85731030-85731049 | MS.gene066439:intron | 25.0% |
| !!! | TTTTTCCTTTGTTTTGATGT+TGG | + | chr1.2:85731029-85731048 | MS.gene066439:intron | 25.0% |
| AAATCCCAACATCAAAACAA+AGG | - | chr1.2:85731037-85731056 | None:intergenic | 30.0% | |
| AAGTCTCCAATATTGAAAAC+AGG | + | chr1.2:85732272-85732291 | MS.gene066439:intron | 30.0% | |
| AATAAGACAACGTTGATGTT+TGG | - | chr1.2:85731567-85731586 | None:intergenic | 30.0% | |
| AATTAACAATGCCACAAACT+CGG | + | chr1.2:85733077-85733096 | MS.gene066439:CDS | 30.0% | |
| ACATAGCATTAACTCTACTA+CGG | - | chr1.2:85731533-85731552 | None:intergenic | 30.0% | |
| ACTCAAAGAGATTCAGAAAA+AGG | + | chr1.2:85730477-85730496 | MS.gene066439:CDS | 30.0% | |
| AGATTACTACAAAGAACAGA+AGG | - | chr1.2:85731663-85731682 | None:intergenic | 30.0% | |
| ATCTAGTAAAACCTGAACAA+TGG | - | chr1.2:85731707-85731726 | None:intergenic | 30.0% | |
| GAAACATGTTATATGAGACA+AGG | + | chr1.2:85732602-85732621 | MS.gene066439:intron | 30.0% | |
| GTGCACACTACTTAAAAAAA+TGG | - | chr1.2:85732573-85732592 | None:intergenic | 30.0% | |
| TACAGTGAAGTAAAAAGATG+GGG | - | chr1.2:85730394-85730413 | None:intergenic | 30.0% | |
| TCATCACTATATGTACTGTA+TGG | - | chr1.2:85732155-85732174 | None:intergenic | 30.0% | |
| TCTGAGAATCAATATCAAGA+AGG | - | chr1.2:85730719-85730738 | None:intergenic | 30.0% | |
| TGAAACTAAAGCAGAGAAAA+GGG | + | chr1.2:85733290-85733309 | MS.gene066439:CDS | 30.0% | |
| TGAAGAGTCATCAGATATAA+AGG | + | chr1.2:85732876-85732895 | MS.gene066439:CDS | 30.0% | |
| TTAACTTACTCGAACAAATC+GGG | + | chr1.2:85732186-85732205 | MS.gene066439:intron | 30.0% | |
| ! | AACATCAACGTTGTCTTATT+TGG | + | chr1.2:85731567-85731586 | MS.gene066439:intron | 30.0% |
| ! | AAGATTTTCAGCAATGTCAA+GGG | - | chr1.2:85732848-85732867 | None:intergenic | 30.0% |
| ! | GTTTCTAAAAAGAATCGATC+TGG | + | chr1.2:85730915-85730934 | MS.gene066439:CDS | 30.0% |
| ! | TAGCTACCTGTTTTCAATAT+TGG | - | chr1.2:85732281-85732300 | None:intergenic | 30.0% |
| ! | TTTAGTTTCACCTCTAACAA+GGG | - | chr1.2:85733280-85733299 | None:intergenic | 30.0% |
| !! | CAATAGTTTTGCTTAAGCTT+GGG | - | chr1.2:85731735-85731754 | None:intergenic | 30.0% |
| !! | TATTGCGCTTTTTACATCTT+TGG | + | chr1.2:85733233-85733252 | MS.gene066439:CDS | 30.0% |
| !! | TTTGGCTAAAATTGAGTTGA+AGG | + | chr1.2:85731122-85731141 | MS.gene066439:intron | 30.0% |
| !!! | ATGCAAAGCATTTTTTCCAT+TGG | - | chr1.2:85731863-85731882 | None:intergenic | 30.0% |
| !!! | TTGTTTTGATGTTGGGATTT+TGG | + | chr1.2:85731037-85731056 | MS.gene066439:intron | 30.0% |
| AAGTAGTTGCAAGTATAAGG+TGG | + | chr1.2:85732473-85732492 | MS.gene066439:intron | 35.0% | |
| AATGAACTTCTGTCAAAGGA+TGG | + | chr1.2:85731814-85731833 | MS.gene066439:CDS | 35.0% | |
| AATGCATTTACGTTTGTGTC+TGG | - | chr1.2:85732805-85732824 | None:intergenic | 35.0% | |
| ACAATATATCCAAAGAGCTG+AGG | + | chr1.2:85733037-85733056 | MS.gene066439:CDS | 35.0% | |
| ACAGTGAAGTAAAAAGATGG+GGG | - | chr1.2:85730393-85730412 | None:intergenic | 35.0% | |
| ACATGCTCAAAAGTAACTAG+GGG | - | chr1.2:85732704-85732723 | None:intergenic | 35.0% | |
| CATTGCATATGGCTGTAAAA+GGG | + | chr1.2:85731977-85731996 | MS.gene066439:CDS | 35.0% | |
| CCAAGCTTAAGCAAAACTAT+TGG | + | chr1.2:85731733-85731752 | MS.gene066439:CDS | 35.0% | |
| CTATGACTTACTATGTAGTG+AGG | + | chr1.2:85733469-85733488 | MS.gene066439:CDS | 35.0% | |
| CTTGAGTAGCTTCAATTTGT+GGG | + | chr1.2:85731606-85731625 | MS.gene066439:intron | 35.0% | |
| GACATGCTCAAAAGTAACTA+GGG | - | chr1.2:85732705-85732724 | None:intergenic | 35.0% | |
| GCTTCAAGTAGAATCAGTTA+TGG | + | chr1.2:85731240-85731259 | MS.gene066439:intron | 35.0% | |
| GTGAAACTAAAGCAGAGAAA+AGG | + | chr1.2:85733289-85733308 | MS.gene066439:CDS | 35.0% | |
| GTGAATGAAGAGAATGAACT+TGG | + | chr1.2:85730810-85730829 | MS.gene066439:CDS | 35.0% | |
| GTGATAATATCCGGAGTTAT+TGG | + | chr1.2:85733444-85733463 | MS.gene066439:CDS | 35.0% | |
| GTTATGCTTCCTGACAAATT+TGG | + | chr1.2:85732048-85732067 | MS.gene066439:CDS | 35.0% | |
| GTTCAAATTACCCTTGTTAG+AGG | + | chr1.2:85733267-85733286 | MS.gene066439:CDS | 35.0% | |
| TCAGCTCTTTGGATATATTG+TGG | - | chr1.2:85733038-85733057 | None:intergenic | 35.0% | |
| TCAGTTATGGAGACAAAATC+AGG | + | chr1.2:85731253-85731272 | MS.gene066439:intron | 35.0% | |
| TCCTTTCAAACTCAGGAAAA+CGG | + | chr1.2:85730583-85730602 | MS.gene066439:CDS | 35.0% | |
| TGACATGCTCAAAAGTAACT+AGG | - | chr1.2:85732706-85732725 | None:intergenic | 35.0% | |
| TGCTACAAAAAATGCAAACG+AGG | + | chr1.2:85732305-85732324 | MS.gene066439:intron | 35.0% | |
| TTGGAAATTGCAAGATCCAA+TGG | + | chr1.2:85731844-85731863 | MS.gene066439:CDS | 35.0% | |
| TTGTTTACTGCTGCTGAAAA+GGG | + | chr1.2:85730843-85730862 | MS.gene066439:CDS | 35.0% | |
| TTTGTTTACTGCTGCTGAAA+AGG | + | chr1.2:85730842-85730861 | MS.gene066439:CDS | 35.0% | |
| ! | CTTTAGTTTCACCTCTAACA+AGG | - | chr1.2:85733281-85733300 | None:intergenic | 35.0% |
| ! | GAAGATTTTCAGCAATGTCA+AGG | - | chr1.2:85732849-85732868 | None:intergenic | 35.0% |
| ! | TACGCTTTTACGTTTATTGC+AGG | + | chr1.2:85730444-85730463 | MS.gene066439:intron | 35.0% |
| ! | TAGCTTCAATTTGTGGGTTA+TGG | + | chr1.2:85731612-85731631 | MS.gene066439:intron | 35.0% |
| ! | TTTTACATCTTTGGCTGTTG+TGG | + | chr1.2:85733242-85733261 | MS.gene066439:CDS | 35.0% |
| !! | CCAATAGTTTTGCTTAAGCT+TGG | - | chr1.2:85731736-85731755 | None:intergenic | 35.0% |
| !!! | GACATTTTTGTTGGTTCTCT+TGG | - | chr1.2:85733016-85733035 | None:intergenic | 35.0% |
| AAGTACGTGAAGCAAGTAAC+GGG | + | chr1.2:85730627-85730646 | MS.gene066439:CDS | 40.0% | |
| AATTCGATCAACCTCGGAAT+TGG | - | chr1.2:85733580-85733599 | None:intergenic | 40.0% | |
| ACGGAGATATTTCGGAAAGT+GGG | - | chr1.2:85730527-85730546 | None:intergenic | 40.0% | |
| AGATAGAAGAAGAACCAACC+TGG | - | chr1.2:85730367-85730386 | None:intergenic | 40.0% | |
| AGGCTTTCACGATTTCTGTA+TGG | - | chr1.2:85731903-85731922 | None:intergenic | 40.0% | |
| AGGTGATTAACAAGCTCATG+TGG | + | chr1.2:85733319-85733338 | MS.gene066439:CDS | 40.0% | |
| AGTCATAGTGCCAATAACTC+CGG | - | chr1.2:85733457-85733476 | None:intergenic | 40.0% | |
| CATTGTTAATTCCTTCCCTG+TGG | - | chr1.2:85733068-85733087 | None:intergenic | 40.0% | |
| CCACAAATTGAAGCTACTCA+AGG | - | chr1.2:85731608-85731627 | None:intergenic | 40.0% | |
| CCTTGAGTAGCTTCAATTTG+TGG | + | chr1.2:85731605-85731624 | MS.gene066439:intron | 40.0% | |
| CGCATAAATTCGATCAACCT+CGG | - | chr1.2:85733586-85733605 | None:intergenic | 40.0% | |
| CTAAGAGAACAAGATCCATG+AGG | + | chr1.2:85733493-85733512 | MS.gene066439:CDS | 40.0% | |
| GAAGTACGTGAAGCAAGTAA+CGG | + | chr1.2:85730626-85730645 | MS.gene066439:CDS | 40.0% | |
| GATTAACAAGCTCATGTGGT+TGG | + | chr1.2:85733323-85733342 | MS.gene066439:CDS | 40.0% | |
| GCATTGCATATGGCTGTAAA+AGG | + | chr1.2:85731976-85731995 | MS.gene066439:CDS | 40.0% | |
| GCTACTCAAGGTCTAACAAT+TGG | - | chr1.2:85731596-85731615 | None:intergenic | 40.0% | |
| GGGTCATCTTGATGTTGTTA+AGG | + | chr1.2:85730863-85730882 | MS.gene066439:CDS | 40.0% | |
| GGTGAATGAACTTCTGTCAA+AGG | + | chr1.2:85731810-85731829 | MS.gene066439:CDS | 40.0% | |
| GTTGGAGGAGTGATAATATC+CGG | + | chr1.2:85733435-85733454 | MS.gene066439:CDS | 40.0% | |
| TGACTAGCAGCAATATGCAA+AGG | - | chr1.2:85730948-85730967 | None:intergenic | 40.0% | |
| TTCATTTGCAGCCATTGTTC+AGG | + | chr1.2:85731693-85731712 | MS.gene066439:intron | 40.0% | |
| TTGCATATTGCTGCTAGTCA+AGG | + | chr1.2:85730948-85730967 | MS.gene066439:CDS | 40.0% | |
| ! | ATTCTGGTTACAGTTGTTGG+AGG | + | chr1.2:85733420-85733439 | MS.gene066439:CDS | 40.0% |
| ! | GCAATTCTGGTTACAGTTGT+TGG | + | chr1.2:85733417-85733436 | MS.gene066439:CDS | 40.0% |
| ! | GCTTTTACGTTTATTGCAGG+TGG | + | chr1.2:85730447-85730466 | MS.gene066439:intron | 40.0% |
| ! | TCCGTTTTCCTGAGTTTGAA+AGG | - | chr1.2:85730587-85730606 | None:intergenic | 40.0% |
| !! | CAGATAATGGGTACTTTGAG+TGG | + | chr1.2:85730735-85730754 | MS.gene066439:CDS | 40.0% |
| AACCAGGAAAAAGCGAGTAG+AGG | + | chr1.2:85732092-85732111 | MS.gene066439:CDS | 45.0% | |
| AAGGACATCCTCTCTCGATA+TGG | + | chr1.2:85732895-85732914 | MS.gene066439:CDS | 45.0% | |
| AAGGGACGAACTGAGGAAAA+CGG | + | chr1.2:85732948-85732967 | MS.gene066439:CDS | 45.0% | |
| ACCTCCAATTTCAACCTTCC+AGG | + | chr1.2:85730346-85730365 | MS.gene066439:CDS | 45.0% | |
| ACCTGGAAGGTTGAAATTGG+AGG | - | chr1.2:85730350-85730369 | None:intergenic | 45.0% | |
| AGAAGAAGAACCAACCTGGA+AGG | - | chr1.2:85730363-85730382 | None:intergenic | 45.0% | |
| AGATGGCGACGGAGATATTT+CGG | - | chr1.2:85730535-85730554 | None:intergenic | 45.0% | |
| AGCAGAGAAAAGGGTAGTTG+AGG | + | chr1.2:85733299-85733318 | MS.gene066439:CDS | 45.0% | |
| AGGACATCCTCTCTCGATAT+GGG | + | chr1.2:85732896-85732915 | MS.gene066439:CDS | 45.0% | |
| AGGGCAAACTGCATTGCATA+TGG | + | chr1.2:85731966-85731985 | MS.gene066439:CDS | 45.0% | |
| CATTTACGTTTGTGTCTGGC+AGG | - | chr1.2:85732801-85732820 | None:intergenic | 45.0% | |
| CCAACCTGGAAGGTTGAAAT+TGG | - | chr1.2:85730353-85730372 | None:intergenic | 45.0% | |
| CCAATTTCAACCTTCCAGGT+TGG | + | chr1.2:85730350-85730369 | MS.gene066439:intron | 45.0% | |
| CTATATTCACCGTACCTGGT+GGG | + | chr1.2:85733142-85733161 | MS.gene066439:CDS | 45.0% | |
| CTCTGAATGATGCCATGAGT+TGG | - | chr1.2:85733553-85733572 | None:intergenic | 45.0% | |
| CTGCTTCTCTTTCTTCCTCA+TGG | - | chr1.2:85733511-85733530 | None:intergenic | 45.0% | |
| CTTCATCTAGCAGCTCAAAG+AGG | + | chr1.2:85730669-85730688 | MS.gene066439:CDS | 45.0% | |
| GAAAACGGATCGATCAAGCA+GGG | + | chr1.2:85730598-85730617 | MS.gene066439:CDS | 45.0% | |
| GAAAGATGTTCACACACAGC+TGG | + | chr1.2:85732984-85733003 | MS.gene066439:CDS | 45.0% | |
| GACGGAGATATTTCGGAAAG+TGG | - | chr1.2:85730528-85730547 | None:intergenic | 45.0% | |
| GAGTTTGAAAGGACTAGAGC+CGG | - | chr1.2:85730576-85730595 | None:intergenic | 45.0% | |
| GCTCTAGTCCTTTCAAACTC+AGG | + | chr1.2:85730576-85730595 | MS.gene066439:CDS | 45.0% | |
| GCTGTGTTGCCAAATTTGTC+AGG | - | chr1.2:85732060-85732079 | None:intergenic | 45.0% | |
| TAACGAGCTCAACCAACCAA+GGG | + | chr1.2:85732930-85732949 | MS.gene066439:CDS | 45.0% | |
| TATATTCACCGTACCTGGTG+GGG | + | chr1.2:85733143-85733162 | MS.gene066439:CDS | 45.0% | |
| TCTGATGACTCTTCAGAGAG+AGG | - | chr1.2:85732871-85732890 | None:intergenic | 45.0% | |
| TGTTATAAGTGGAGTGGCGT+TGG | - | chr1.2:85731764-85731783 | None:intergenic | 45.0% | |
| TTATAACAGCAGCGACGAGA+GGG | + | chr1.2:85731776-85731795 | MS.gene066439:CDS | 45.0% | |
| TTCACGATTTCTGTATGGCC+CGG | - | chr1.2:85731898-85731917 | None:intergenic | 45.0% | |
| TTCAGAGTTCTCCAATTCCG+AGG | + | chr1.2:85733566-85733585 | MS.gene066439:CDS | 45.0% | |
| TTTGCATTTAGCTGCTCGTC+CGG | + | chr1.2:85731876-85731895 | MS.gene066439:CDS | 45.0% | |
| !! | CAATGTCAAGGGCTGTTTTG+TGG | - | chr1.2:85732837-85732856 | None:intergenic | 45.0% |
| !! | TAACGATGATGGATCAGGAG+TGG | + | chr1.2:85733167-85733186 | MS.gene066439:CDS | 45.0% |
| !!! | TACCTCTACTCGCTTTTTCC+TGG | - | chr1.2:85732097-85732116 | None:intergenic | 45.0% |
| !!! | TTTTGTATTTTTTTTTTTTT+TGG | + | chr1.2:85731289-85731308 | MS.gene066439:intron | 5.0% |
| AAGAGCTGAGGAAACTCCAC+AGG | + | chr1.2:85733049-85733068 | MS.gene066439:CDS | 50.0% | |
| ACCGACGACTATGTACGAAG+AGG | - | chr1.2:85733379-85733398 | None:intergenic | 50.0% | |
| AGAAAGAGAAGCAGCTAGCC+AGG | + | chr1.2:85733517-85733536 | MS.gene066439:CDS | 50.0% | |
| AGAGCTGAGGAAACTCCACA+GGG | + | chr1.2:85733050-85733069 | MS.gene066439:CDS | 50.0% | |
| AGAGGCAATAAATGCCACCG+AGG | - | chr1.2:85733361-85733380 | None:intergenic | 50.0% | |
| ATCGTTATCCCCACCAGGTA+CGG | - | chr1.2:85733154-85733173 | None:intergenic | 50.0% | |
| CGCTGCTGTTATAAGTGGAG+TGG | - | chr1.2:85731770-85731789 | None:intergenic | 50.0% | |
| CTAACGAGCTCAACCAACCA+AGG | + | chr1.2:85732929-85732948 | MS.gene066439:CDS | 50.0% | |
| CTCGGAGGACTGACAAGAAA+GGG | + | chr1.2:85731947-85731966 | MS.gene066439:CDS | 50.0% | |
| CTCGTCGCTGCTGTTATAAG+TGG | - | chr1.2:85731775-85731794 | None:intergenic | 50.0% | |
| CTTATAACAGCAGCGACGAG+AGG | + | chr1.2:85731775-85731794 | MS.gene066439:CDS | 50.0% | |
| CTTCGTACATAGTCGTCGGT+CGG | + | chr1.2:85733379-85733398 | MS.gene066439:CDS | 50.0% | |
| GCAAAGACCCTCAATTGGCT+CGG | + | chr1.2:85731929-85731948 | MS.gene066439:CDS | 50.0% | |
| GCAGCTCAAAGAGGTGATGT+TGG | + | chr1.2:85730678-85730697 | MS.gene066439:CDS | 50.0% | |
| GCCTCTTCGTACATAGTCGT+CGG | + | chr1.2:85733375-85733394 | MS.gene066439:CDS | 50.0% | |
| GCTATATTCACCGTACCTGG+TGG | + | chr1.2:85733141-85733160 | MS.gene066439:CDS | 50.0% | |
| GCTCAGCAAAGACCCTCAAT+TGG | + | chr1.2:85731924-85731943 | MS.gene066439:CDS | 50.0% | |
| GCTGCTAGTCAAGGACATCA+TGG | + | chr1.2:85730957-85730976 | MS.gene066439:CDS | 50.0% | |
| GCTGCTATATTCACCGTACC+TGG | + | chr1.2:85733138-85733157 | MS.gene066439:CDS | 50.0% | |
| GGAAAACGGATCGATCAAGC+AGG | + | chr1.2:85730597-85730616 | MS.gene066439:CDS | 50.0% | |
| GGACATCCTCTCTCGATATG+GGG | + | chr1.2:85732897-85732916 | MS.gene066439:CDS | 50.0% | |
| GGAGAAGTGGATCCAACTCA+TGG | + | chr1.2:85733538-85733557 | MS.gene066439:CDS | 50.0% | |
| GTCAAAGGATGGCAGCTTGT+TGG | + | chr1.2:85731825-85731844 | MS.gene066439:CDS | 50.0% | |
| GTGGAGTTTCCTCAGCTCTT+TGG | - | chr1.2:85733049-85733068 | None:intergenic | 50.0% | |
| TAAGTGCCCCATATCGAGAG+AGG | - | chr1.2:85732906-85732925 | None:intergenic | 50.0% | |
| TGGCAACACAGCATTGCATG+TGG | + | chr1.2:85732068-85732087 | MS.gene066439:CDS | 50.0% | |
| TTGAGGGTCTTTGCTGAGCA+AGG | - | chr1.2:85731923-85731942 | None:intergenic | 50.0% | |
| TTGCATTTAGCTGCTCGTCC+GGG | + | chr1.2:85731877-85731896 | MS.gene066439:CDS | 50.0% | |
| ! | ATAAGTGGAGTGGCGTTGGA+TGG | - | chr1.2:85731760-85731779 | None:intergenic | 50.0% |
| ! | GTTGGCTTCTGTCTGTACCT+CGG | + | chr1.2:85733341-85733360 | MS.gene066439:CDS | 50.0% |
| ! | GTTTTCCTCAGTTCGTCCCT+TGG | - | chr1.2:85732949-85732968 | None:intergenic | 50.0% |
| ! | TCGGAAAGTGGGTTCTGTGT+TGG | - | chr1.2:85730516-85730535 | None:intergenic | 50.0% |
| ! | TGAGTTGGATCCACTTCTCC+TGG | - | chr1.2:85733538-85733557 | None:intergenic | 50.0% |
| !! | GGGGATAACGATGATGGATC+AGG | + | chr1.2:85733162-85733181 | MS.gene066439:CDS | 50.0% |
| AAAAGGGCAGAGCTGTGACG+TGG | + | chr1.2:85731993-85732012 | MS.gene066439:CDS | 55.0% | |
| AAGCAGCTAGCCAGGAGAAG+TGG | + | chr1.2:85733525-85733544 | MS.gene066439:CDS | 55.0% | |
| ACCAACCAAGGGACGAACTG+AGG | + | chr1.2:85732941-85732960 | MS.gene066439:CDS | 55.0% | |
| CACCACTGTCACCGAGTTTG+TGG | - | chr1.2:85733091-85733110 | None:intergenic | 55.0% | |
| CAGCATTGCATGTGGCAACC+AGG | + | chr1.2:85732076-85732095 | MS.gene066439:CDS | 55.0% | |
| CAGTCCTCCGAGCCAATTGA+GGG | - | chr1.2:85731939-85731958 | None:intergenic | 55.0% | |
| CCATCATCGTTATCCCCACC+AGG | - | chr1.2:85733159-85733178 | None:intergenic | 55.0% | |
| CCTGGTGGGGATAACGATGA+TGG | + | chr1.2:85733156-85733175 | MS.gene066439:CDS | 55.0% | |
| CTGAGGAAACTCCACAGGGA+AGG | + | chr1.2:85733054-85733073 | MS.gene066439:CDS | 55.0% | |
| GCTCGGAGGACTGACAAGAA+AGG | + | chr1.2:85731946-85731965 | MS.gene066439:CDS | 55.0% | |
| TCAGTCCTCCGAGCCAATTG+AGG | - | chr1.2:85731940-85731959 | None:intergenic | 55.0% | |
| TCCTCAGTTCGTCCCTTGGT+TGG | - | chr1.2:85732945-85732964 | None:intergenic | 55.0% | |
| ! | CACAAACTCGGTGACAGTGG+TGG | + | chr1.2:85733089-85733108 | MS.gene066439:CDS | 55.0% |
| ! | TGCCACAAACTCGGTGACAG+TGG | + | chr1.2:85733086-85733105 | MS.gene066439:CDS | 55.0% |
| !! | AAGACCCTCAATTGGCTCGG+AGG | + | chr1.2:85731932-85731951 | MS.gene066439:CDS | 55.0% |
| !! | GAACGAGTGGGCTGCAATTC+TGG | + | chr1.2:85733404-85733423 | MS.gene066439:CDS | 55.0% |
| CGTACATAGTCGTCGGTCGG+AGG | + | chr1.2:85733382-85733401 | MS.gene066439:CDS | 60.0% | |
| GGCTTCTGTCTGTACCTCGG+TGG | + | chr1.2:85733344-85733363 | MS.gene066439:CDS | 60.0% | |
| CGTCGGTCGGAGGAACGAGT+GGG | + | chr1.2:85733392-85733411 | MS.gene066439:CDS | 65.0% | |
| TCGTCGGTCGGAGGAACGAG+TGG | + | chr1.2:85733391-85733410 | MS.gene066439:CDS | 65.0% | |
| ! | GACGAGAGGGCACGTCGAAG+TGG | + | chr1.2:85731789-85731808 | MS.gene066439:CDS | 65.0% |
| GCCATCTCCGTCGTCCGCGA+CGG | + | chr1.2:85730548-85730567 | MS.gene066439:CDS | 70.0% | |
| GCGGACGACGGAGATGGCGA+CGG | - | chr1.2:85730546-85730565 | None:intergenic | 70.0% | |
| GACTAGAGCCGGCGCCGTCG+CGG | - | chr1.2:85730565-85730584 | None:intergenic | 75.0% | |
| GCCGTCGCGGACGACGGAGA+TGG | - | chr1.2:85730552-85730571 | None:intergenic | 75.0% | |
| ! | TCCGTCGTCCGCGACGGCGC+CGG | + | chr1.2:85730554-85730573 | MS.gene066439:CDS | 80.0% |
| ! | GCCGGCGCCGTCGCGGACGA+CGG | - | chr1.2:85730558-85730577 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 85730343 | 85733611 | 85730343 | ID=MS.gene066439 |
| chr1.2 | mRNA | 85730343 | 85733611 | 85730343 | ID=MS.gene066439.t1;Parent=MS.gene066439 |
| chr1.2 | exon | 85730343 | 85730367 | 85730343 | ID=MS.gene066439.t1.exon1;Parent=MS.gene066439.t1 |
| chr1.2 | CDS | 85730343 | 85730367 | 85730343 | ID=cds.MS.gene066439.t1;Parent=MS.gene066439.t1 |
| chr1.2 | exon | 85730466 | 85730978 | 85730466 | ID=MS.gene066439.t1.exon2;Parent=MS.gene066439.t1 |
| chr1.2 | CDS | 85730466 | 85730978 | 85730466 | ID=cds.MS.gene066439.t1;Parent=MS.gene066439.t1 |
| chr1.2 | exon | 85731704 | 85732113 | 85731704 | ID=MS.gene066439.t1.exon3;Parent=MS.gene066439.t1 |
| chr1.2 | CDS | 85731704 | 85732113 | 85731704 | ID=cds.MS.gene066439.t1;Parent=MS.gene066439.t1 |
| chr1.2 | exon | 85732778 | 85733611 | 85732778 | ID=MS.gene066439.t1.exon4;Parent=MS.gene066439.t1 |
| chr1.2 | CDS | 85732778 | 85733611 | 85732778 | ID=cds.MS.gene066439.t1;Parent=MS.gene066439.t1 |
| Gene Sequence |
| Protein sequence |