AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97346


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97346.t1 MTR_1g115575 99.157 593 5 0 1 593 1 593 0.0 1201
MS.gene97346.t1 MTR_7g100430 73.042 549 141 4 46 593 40 582 0.0 791
MS.gene97346.t1 MTR_2g096190 46.209 554 253 9 61 593 15 544 3.25e-147 436
MS.gene97346.t1 MTR_4g062100 47.126 522 237 8 58 563 16 514 3.06e-145 431
MS.gene97346.t1 MTR_7g117620 45.421 546 255 7 61 593 31 546 9.83e-137 409
MS.gene97346.t1 MTR_1g032100 45.436 482 246 7 127 593 52 531 7.15e-128 386
MS.gene97346.t1 MTR_7g100390 42.620 542 273 7 66 593 3 520 3.77e-125 379
MS.gene97346.t1 MTR_8g105260 43.659 481 256 4 127 593 59 538 7.96e-125 378
MS.gene97346.t1 MTR_1g069110 27.021 433 263 12 170 559 18 440 1.39e-27 116
MS.gene97346.t1 MTR_2g101310 22.951 610 356 14 4 567 69 610 1.17e-26 115
MS.gene97346.t1 MTR_2g101310 25.403 248 184 1 96 343 1 247 1.37e-20 96.3
MS.gene97346.t1 MTR_3g105650 22.707 458 298 12 138 577 8 427 5.03e-25 108
MS.gene97346.t1 MTR_2g101320 28.896 308 202 5 74 367 37 341 2.31e-21 99.0
MS.gene97346.t1 MTR_2g101320 26.949 449 250 15 130 522 137 563 2.20e-20 95.9
MS.gene97346.t1 MTR_2g101320 26.471 238 173 2 107 343 11 247 5.61e-19 91.3
MS.gene97346.t1 MTR_2g101310 25.403 248 184 1 96 343 1 247 3.34e-20 94.4
MS.gene97346.t1 MTR_2g101310 21.912 502 281 12 4 462 69 502 4.77e-11 65.9
MS.gene97346.t1 MTR_8g467780 25.469 373 214 10 76 445 10 321 2.10e-19 91.7
MS.gene97346.t1 MTR_2g096760 31.707 205 121 4 134 322 14 215 2.62e-19 91.3
MS.gene97346.t1 MTR_8g073260 26.756 299 178 6 169 452 46 318 5.15e-19 90.5
MS.gene97346.t1 MTR_8g066670 23.622 381 230 9 138 482 1078 1433 1.92e-17 87.0
MS.gene97346.t1 MTR_1g059930 27.090 299 177 8 169 452 47 319 4.99e-17 84.3
MS.gene97346.t1 MTR_8g068990 24.860 358 194 11 169 489 47 366 2.21e-16 82.4
MS.gene97346.t1 MTR_5g085830 26.098 410 256 12 169 562 312 690 3.11e-16 82.8
MS.gene97346.t1 MTR_7g451420 24.611 321 206 6 138 445 12 309 3.27e-16 80.5
MS.gene97346.t1 MTR_5g085810 27.128 376 238 11 169 533 338 688 4.82e-16 82.0
MS.gene97346.t1 MTR_5g085480 24.319 477 310 14 128 562 207 674 8.53e-16 81.3
MS.gene97346.t1 MTR_5g085480 24.319 477 310 14 128 562 47 514 9.87e-16 80.9
MS.gene97346.t1 MTR_8g072510 23.653 427 245 13 169 556 45 429 1.03e-15 80.1
MS.gene97346.t1 MTR_4g063830 30.288 208 124 7 132 322 13 216 1.20e-15 80.1
MS.gene97346.t1 MTR_8g069880 22.636 349 206 8 169 480 42 363 2.22e-15 79.3
MS.gene97346.t1 MTR_7g099570 27.917 240 158 6 135 361 9 246 5.18e-15 78.6
MS.gene97346.t1 MTR_7g021090 23.099 355 208 9 169 488 44 368 2.61e-14 75.5
MS.gene97346.t1 MTR_8g040930 23.684 342 198 10 177 480 2 318 3.66e-14 75.1
MS.gene97346.t1 MTR_8g041240 23.684 342 198 10 177 480 2 318 3.66e-14 75.1
MS.gene97346.t1 MTR_8g062410 25.000 336 200 10 138 453 13 316 8.01e-14 74.3
MS.gene97346.t1 MTR_5g043640 33.708 178 111 5 132 306 20 193 1.33e-13 71.2
MS.gene97346.t1 MTR_3g016210 24.917 301 178 9 169 445 45 321 3.56e-13 72.4
MS.gene97346.t1 MTR_3g055310 29.670 182 106 5 383 542 262 443 3.64e-13 72.4
MS.gene97346.t1 MTR_3g055310 29.670 182 106 5 383 542 288 469 3.80e-13 72.4
MS.gene97346.t1 MTR_3g055310 29.670 182 106 5 383 542 315 496 4.56e-13 72.4
MS.gene97346.t1 MTR_3g055310 29.670 182 106 5 383 542 290 471 4.64e-13 72.0
MS.gene97346.t1 MTR_3g055310 29.670 182 106 5 383 542 147 328 5.07e-13 71.2
MS.gene97346.t1 MTR_3g055310 29.670 182 106 5 383 542 210 391 5.09e-13 71.6
MS.gene97346.t1 MTR_8g039620 21.809 376 234 9 169 509 49 399 6.06e-13 71.6
MS.gene97346.t1 MTR_8g080080 26.183 317 194 9 72 352 77 389 8.19e-13 71.6
MS.gene97346.t1 MTR_1g112830 29.952 207 137 5 120 322 120 322 1.45e-12 70.9
MS.gene97346.t1 MTR_3g085830 28.342 187 125 3 131 309 105 290 2.05e-12 70.5
MS.gene97346.t1 MTR_3g085830 27.208 283 173 9 100 355 108 384 3.83e-12 69.7
MS.gene97346.t1 MTR_5g028190 25.284 352 185 11 213 544 213 506 1.57e-11 67.4
MS.gene97346.t1 MTR_6g027840 27.935 247 158 7 90 323 125 364 2.13e-11 67.0
MS.gene97346.t1 MTR_4g116160 30.319 188 127 4 135 322 40 223 2.69e-11 67.0
MS.gene97346.t1 MTR_4g116160 30.319 188 127 4 135 322 40 223 3.40e-11 66.2
MS.gene97346.t1 MTR_4g129470 30.392 204 98 6 128 294 9 205 4.01e-11 66.2
MS.gene97346.t1 MTR_4g021880 25.806 217 145 5 121 322 86 301 5.80e-11 65.1
MS.gene97346.t1 MTR_1g089180 28.947 228 134 8 114 317 198 421 7.48e-11 65.1
MS.gene97346.t1 MTR_2g438740 21.257 541 333 15 53 545 57 552 8.22e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97346.t1 AT3G12360 80.684 585 104 4 14 593 10 590 0.0 954
MS.gene97346.t1 AT3G12360 80.895 581 102 4 18 593 2 578 0.0 950
MS.gene97346.t1 AT3G09550 71.502 586 148 3 24 593 25 607 0.0 833
MS.gene97346.t1 AT3G09550 71.502 586 148 3 24 593 25 607 0.0 833
MS.gene97346.t1 AT3G09550 71.502 586 148 3 24 593 32 614 0.0 832
MS.gene97346.t1 AT2G31820 43.534 549 271 7 60 593 138 662 7.75e-138 416
MS.gene97346.t1 AT1G05640 44.404 554 270 7 56 593 96 627 7.37e-136 410
MS.gene97346.t1 AT5G60070 46.595 558 244 13 61 593 20 548 3.29e-135 405
MS.gene97346.t1 AT2G01680 43.110 508 273 8 99 593 28 532 2.18e-129 390
MS.gene97346.t1 AT1G07710 44.565 552 264 5 61 593 15 543 2.36e-129 390
MS.gene97346.t1 AT1G07710 44.565 552 264 5 61 593 15 543 2.36e-129 390
MS.gene97346.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene97346.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene97346.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene97346.t1 AT5G02620 41.899 537 248 8 61 556 5 518 1.12e-118 363
MS.gene97346.t1 AT5G02620 41.899 537 248 8 61 556 5 518 1.12e-118 363
MS.gene97346.t1 AT1G10340 25.202 496 309 12 111 552 51 538 2.23e-34 138
MS.gene97346.t1 AT5G54710 27.308 520 284 17 68 552 97 557 1.47e-33 135
MS.gene97346.t1 AT5G54710 27.308 520 284 17 68 552 142 602 2.30e-33 135
MS.gene97346.t1 AT1G10340 24.593 492 313 11 111 552 51 534 2.36e-33 135
MS.gene97346.t1 AT1G34050 26.145 524 294 15 108 554 28 535 6.25e-33 134
MS.gene97346.t1 AT2G24600 26.892 502 290 18 72 538 70 529 3.52e-32 131
MS.gene97346.t1 AT2G24600 26.892 502 290 18 72 538 70 529 3.52e-32 131
MS.gene97346.t1 AT4G03500 26.047 549 280 17 58 522 54 560 2.27e-30 126
MS.gene97346.t1 AT4G03500 26.047 549 280 17 58 522 54 560 2.27e-30 126
MS.gene97346.t1 AT4G03500 26.047 549 280 17 58 522 77 583 2.41e-30 126
MS.gene97346.t1 AT1G03670 25.581 516 328 9 74 562 107 593 2.54e-26 114
MS.gene97346.t1 AT4G03490 27.674 430 267 12 133 551 180 576 5.93e-25 110
MS.gene97346.t1 AT4G03490 27.830 424 262 12 133 545 170 560 7.88e-25 109
MS.gene97346.t1 AT4G03490 27.830 424 262 12 133 545 180 570 8.09e-25 109
MS.gene97346.t1 AT4G03460 26.406 409 256 8 128 522 158 535 8.30e-24 106
MS.gene97346.t1 AT4G03460 26.406 409 256 8 128 522 190 567 8.97e-24 106
MS.gene97346.t1 AT4G03490 24.915 586 332 18 65 574 9 562 1.02e-23 106
MS.gene97346.t1 AT5G50140 22.913 515 297 16 126 563 22 513 1.04e-23 105
MS.gene97346.t1 AT4G03490 25.277 542 318 15 65 551 19 528 2.41e-23 105
MS.gene97346.t1 AT5G54700 28.435 313 159 9 223 523 20 279 1.38e-22 99.8
MS.gene97346.t1 AT4G10720 24.096 415 258 12 169 559 40 421 3.30e-22 100
MS.gene97346.t1 AT5G54700 27.809 356 182 12 202 523 2 316 6.72e-22 99.8
MS.gene97346.t1 AT4G10720 25.076 327 210 6 169 477 40 349 1.95e-21 97.4
MS.gene97346.t1 AT4G14390 24.722 449 281 11 128 556 226 637 2.14e-20 95.9
MS.gene97346.t1 AT4G14390 24.722 449 281 11 128 556 245 656 2.62e-20 95.5
MS.gene97346.t1 AT4G14390 24.889 450 280 12 128 556 245 657 2.97e-20 95.5
MS.gene97346.t1 AT4G03480 26.076 395 232 9 118 482 295 659 1.56e-19 93.2
MS.gene97346.t1 AT4G03480 26.076 395 232 9 118 482 292 656 1.64e-19 93.2
MS.gene97346.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene97346.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene97346.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene97346.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene97346.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene97346.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene97346.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene97346.t1 AT5G15500 23.427 461 288 15 130 559 1 427 2.69e-18 88.2
MS.gene97346.t1 AT2G24600 26.420 405 232 14 72 450 70 434 1.74e-17 86.3
MS.gene97346.t1 AT2G24600 26.420 405 232 14 72 450 70 434 1.74e-17 86.3
MS.gene97346.t1 AT4G03450 24.505 555 306 17 58 528 45 570 1.80e-17 86.7
MS.gene97346.t1 AT5G51160 25.000 352 198 8 157 478 38 353 2.37e-17 85.5
MS.gene97346.t1 AT4G03450 24.505 555 306 17 58 528 45 570 5.25e-17 85.1
MS.gene97346.t1 AT4G03470 26.044 503 294 18 77 542 157 618 1.33e-16 84.0
MS.gene97346.t1 AT3G04140 27.622 286 160 8 100 342 105 386 2.91e-16 82.8
MS.gene97346.t1 AT1G14500 22.769 325 215 5 169 475 40 346 3.82e-15 78.6
MS.gene97346.t1 AT2G03430 34.659 176 106 5 135 306 16 186 8.47e-15 74.7
MS.gene97346.t1 AT4G14390 26.748 329 195 8 128 443 226 521 4.90e-13 72.4
MS.gene97346.t1 AT5G54620 29.570 186 119 2 169 342 40 225 8.05e-13 71.2
MS.gene97346.t1 AT5G54610 27.717 184 123 2 169 342 40 223 8.10e-13 71.2
MS.gene97346.t1 AT3G18670 23.111 450 296 12 123 530 113 554 1.08e-12 71.2
MS.gene97346.t1 AT2G28840 27.273 209 129 7 132 322 12 215 2.01e-12 70.1
MS.gene97346.t1 AT4G03440 23.126 467 308 12 104 550 258 693 3.93e-12 69.7
MS.gene97346.t1 AT4G03440 23.126 467 308 12 104 550 251 686 4.34e-12 69.7
MS.gene97346.t1 AT4G03440 23.126 467 308 12 104 550 251 686 4.34e-12 69.7
MS.gene97346.t1 AT4G14400 23.242 512 310 20 75 538 71 547 3.99e-11 66.2
MS.gene97346.t1 AT4G14400 23.242 512 310 20 75 538 71 547 3.99e-11 66.2
MS.gene97346.t1 AT3G18670 23.684 304 183 7 236 530 346 609 4.68e-11 66.2
MS.gene97346.t1 AT4G14400 23.242 512 310 20 75 538 137 613 5.65e-11 65.9

Find 137 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTGCATATGGCTGTAAA+AGG 0.222840 1.2:+85797822 MS.gene97346:CDS
TGATATTGATTCTCAGATAA+TGG 0.227356 1.2:+85796532 MS.gene97346:CDS
GTGGAGTTTCCTCAGCTCTT+TGG 0.250605 1.2:-85798892 None:intergenic
GTTATGCTTCCTGACAAATT+TGG 0.259995 1.2:+85797894 MS.gene97346:CDS
GAACGAGTGGGCTGCAATTC+TGG 0.267500 1.2:+85799250 MS.gene97346:CDS
ACCTCCAATTTCAACCTTCC+AGG 0.283929 1.2:+85796154 MS.gene97346:CDS
ACTCAAAGAGATTCAGAAAA+AGG 0.285730 1.2:+85796287 MS.gene97346:CDS
AAGGACATCCTCTCTCGATA+TGG 0.290107 1.2:+85798741 MS.gene97346:CDS
CCAACCTGGAAGGTTGAAAT+TGG 0.303178 1.2:-85796158 None:intergenic
TTCATTTGCAGCCATTGTTC+AGG 0.330505 1.2:+85797539 MS.gene97346:intron
CTGCTTCTCTTTCTTCCTCA+TGG 0.331730 1.2:-85799354 None:intergenic
GCAATTCTGGTTACAGTTGT+TGG 0.335512 1.2:+85799263 MS.gene97346:CDS
GATATTGATTCTCAGATAAT+GGG 0.350929 1.2:+85796533 MS.gene97346:CDS
AATTCGATCAACCTCGGAAT+TGG 0.351942 1.2:-85799423 None:intergenic
TGAAGAGTCATCAGATATAA+AGG 0.366092 1.2:+85798722 MS.gene97346:CDS
TTTGTTTACTGCTGCTGAAA+AGG 0.377535 1.2:+85796652 MS.gene97346:CDS
AGATGGCGACGGAGATATTT+CGG 0.380641 1.2:-85796342 None:intergenic
GTTCAAATTACCCTTGTTAG+AGG 0.385400 1.2:+85799113 MS.gene97346:CDS
GTGATAATATCCGGAGTTAT+TGG 0.388823 1.2:+85799290 MS.gene97346:CDS
GTGAAACTAAAGCAGAGAAA+AGG 0.392404 1.2:+85799135 MS.gene97346:CDS
TTTGCATTTAGCTGCTCGTC+CGG 0.403120 1.2:+85797722 MS.gene97346:CDS
GTCAAAGGATGGCAGCTTGT+TGG 0.404723 1.2:+85797671 MS.gene97346:CDS
GGGTCATCTTGATGTTGTTA+AGG 0.408314 1.2:+85796673 MS.gene97346:CDS
AGAAAGAGAAGCAGCTAGCC+AGG 0.411228 1.2:+85799363 MS.gene97346:CDS
AGGACATCCTCTCTCGATAT+GGG 0.415929 1.2:+85798742 MS.gene97346:CDS
CACCACTGTCACCGAGTTTG+TGG 0.435710 1.2:-85798934 None:intergenic
CTCGTCGCTGCTGTTATAAG+TGG 0.455896 1.2:-85797618 None:intergenic
TCCGTCGTCCGCGACGGCGC+CGG 0.456322 1.2:+85796364 MS.gene97346:CDS
AGGCTTTCACGATTTCTGTA+TGG 0.466846 1.2:-85797746 None:intergenic
TTGCATTTAGCTGCTCGTCC+GGG 0.469773 1.2:+85797723 MS.gene97346:CDS
GCTGCTATATTCACCGTACC+TGG 0.472210 1.2:+85798984 MS.gene97346:CDS
TCCTCAGTTCGTCCCTTGGT+TGG 0.473921 1.2:-85798788 None:intergenic
CATTTACGTTTGTGTCTGGC+AGG 0.475438 1.2:-85798644 None:intergenic
TTGTTTACTGCTGCTGAAAA+GGG 0.479987 1.2:+85796653 MS.gene97346:CDS
GCTCAGCAAAGACCCTCAAT+TGG 0.481998 1.2:+85797770 MS.gene97346:CDS
CTTTAGTTTCACCTCTAACA+AGG 0.482809 1.2:-85799124 None:intergenic
CCAAGCTTAAGCAAAACTAT+TGG 0.486154 1.2:+85797579 MS.gene97346:CDS
TGAGTTGGATCCACTTCTCC+TGG 0.491866 1.2:-85799381 None:intergenic
GGGGATAACGATGATGGATC+AGG 0.492044 1.2:+85799008 MS.gene97346:CDS
CAGTCCTCCGAGCCAATTGA+GGG 0.492228 1.2:-85797782 None:intergenic
TCCTTTCAAACTCAGGAAAA+CGG 0.494021 1.2:+85796393 MS.gene97346:CDS
TGAAACTAAAGCAGAGAAAA+GGG 0.501105 1.2:+85799136 MS.gene97346:CDS
AGGGCAAACTGCATTGCATA+TGG 0.501695 1.2:+85797812 MS.gene97346:CDS
TCAGCTCTTTGGATATATTG+TGG 0.502735 1.2:-85798881 None:intergenic
ATCGTTATCCCCACCAGGTA+CGG 0.503271 1.2:-85798997 None:intergenic
TTGAGGGTCTTTGCTGAGCA+AGG 0.503619 1.2:-85797766 None:intergenic
AATGCATTTACGTTTGTGTC+TGG 0.503703 1.2:-85798648 None:intergenic
TTGGAAATTGCAAGATCCAA+TGG 0.508338 1.2:+85797690 MS.gene97346:CDS
AAGTACGTGAAGCAAGTAAC+GGG 0.508570 1.2:+85796437 MS.gene97346:CDS
GCTCGGAGGACTGACAAGAA+AGG 0.509842 1.2:+85797792 MS.gene97346:CDS
GACGGAGATATTTCGGAAAG+TGG 0.514348 1.2:-85796335 None:intergenic
CTCGGAGGACTGACAAGAAA+GGG 0.519611 1.2:+85797793 MS.gene97346:CDS
TTCACGATTTCTGTATGGCC+CGG 0.525638 1.2:-85797741 None:intergenic
GTTGGAGGAGTGATAATATC+CGG 0.527167 1.2:+85799281 MS.gene97346:CDS
GCCGGCGCCGTCGCGGACGA+CGG 0.529146 1.2:-85796365 None:intergenic
CATTGCATATGGCTGTAAAA+GGG 0.531587 1.2:+85797823 MS.gene97346:CDS
GAAAGATGTTCACACACAGC+TGG 0.535788 1.2:+85798830 MS.gene97346:CDS
CCTGGTGGGGATAACGATGA+TGG 0.535860 1.2:+85799002 MS.gene97346:CDS
GCCATCTCCGTCGTCCGCGA+CGG 0.536247 1.2:+85796358 MS.gene97346:CDS
GCTGTGTTGCCAAATTTGTC+AGG 0.537540 1.2:-85797903 None:intergenic
GGAAAACGGATCGATCAAGC+AGG 0.537963 1.2:+85796407 MS.gene97346:CDS
CTATATTCACCGTACCTGGT+GGG 0.538227 1.2:+85798988 MS.gene97346:CDS
CAGCATTGCATGTGGCAACC+AGG 0.541967 1.2:+85797922 MS.gene97346:CDS
AAGCAGCTAGCCAGGAGAAG+TGG 0.542236 1.2:+85799371 MS.gene97346:CDS
TCAGTCCTCCGAGCCAATTG+AGG 0.545108 1.2:-85797783 None:intergenic
TCGGAAAGTGGGTTCTGTGT+TGG 0.547229 1.2:-85796323 None:intergenic
GACTAGAGCCGGCGCCGTCG+CGG 0.548417 1.2:-85796372 None:intergenic
TTGCATATTGCTGCTAGTCA+AGG 0.549825 1.2:+85796758 MS.gene97346:CDS
CAGATAATGGGTACTTTGAG+TGG 0.549949 1.2:+85796545 MS.gene97346:CDS
CTCTGAATGATGCCATGAGT+TGG 0.551504 1.2:-85799396 None:intergenic
AAGAGCTGAGGAAACTCCAC+AGG 0.552962 1.2:+85798895 MS.gene97346:CDS
ATTCTGGTTACAGTTGTTGG+AGG 0.554005 1.2:+85799266 MS.gene97346:CDS
GATTAACAAGCTCATGTGGT+TGG 0.554304 1.2:+85799169 MS.gene97346:CDS
AAGGGACGAACTGAGGAAAA+CGG 0.554349 1.2:+85798794 MS.gene97346:CDS
ACCTGGAAGGTTGAAATTGG+AGG 0.558297 1.2:-85796155 None:intergenic
GCCGTCGCGGACGACGGAGA+TGG 0.559929 1.2:-85796359 None:intergenic
CCATCATCGTTATCCCCACC+AGG 0.564948 1.2:-85799002 None:intergenic
TTTAGTTTCACCTCTAACAA+GGG 0.565107 1.2:-85799123 None:intergenic
GAGTTTGAAAGGACTAGAGC+CGG 0.567456 1.2:-85796383 None:intergenic
GCAAAGACCCTCAATTGGCT+CGG 0.569896 1.2:+85797775 MS.gene97346:CDS
GCTCTAGTCCTTTCAAACTC+AGG 0.572097 1.2:+85796386 MS.gene97346:CDS
CATTGTTAATTCCTTCCCTG+TGG 0.572226 1.2:-85798911 None:intergenic
AGCAGAGAAAAGGGTAGTTG+AGG 0.573019 1.2:+85799145 MS.gene97346:CDS
TCGTCGGTCGGAGGAACGAG+TGG 0.574175 1.2:+85799237 MS.gene97346:CDS
CGCTGCTGTTATAAGTGGAG+TGG 0.575162 1.2:-85797613 None:intergenic
GCTGCTAGTCAAGGACATCA+TGG 0.575482 1.2:+85796767 MS.gene97346:CDS
ATAAGTGGAGTGGCGTTGGA+TGG 0.578501 1.2:-85797603 None:intergenic
GCAGCTCAAAGAGGTGATGT+TGG 0.583391 1.2:+85796488 MS.gene97346:CDS
GTGAATGAAGAGAATGAACT+TGG 0.587406 1.2:+85796620 MS.gene97346:CDS
TCTGAGAATCAATATCAAGA+AGG 0.587872 1.2:-85796526 None:intergenic
ACGGAGATATTTCGGAAAGT+GGG 0.587917 1.2:-85796334 None:intergenic
TGTTATAAGTGGAGTGGCGT+TGG 0.592828 1.2:-85797607 None:intergenic
TTCAGAGTTCTCCAATTCCG+AGG 0.592884 1.2:+85799412 MS.gene97346:CDS
GCTATATTCACCGTACCTGG+TGG 0.598478 1.2:+85798987 MS.gene97346:CDS
ATCTAGTAAAACCTGAACAA+TGG 0.600510 1.2:-85797550 None:intergenic
GCCTCTTCGTACATAGTCGT+CGG 0.600824 1.2:+85799221 MS.gene97346:CDS
CGCATAAATTCGATCAACCT+CGG 0.601587 1.2:-85799429 None:intergenic
CGTACATAGTCGTCGGTCGG+AGG 0.602499 1.2:+85799228 MS.gene97346:CDS
GTTGGCTTCTGTCTGTACCT+CGG 0.602568 1.2:+85799187 MS.gene97346:CDS
CTGAGGAAACTCCACAGGGA+AGG 0.603249 1.2:+85798900 MS.gene97346:CDS
TATATTCACCGTACCTGGTG+GGG 0.603908 1.2:+85798989 MS.gene97346:CDS
GAAGTACGTGAAGCAAGTAA+CGG 0.604371 1.2:+85796436 MS.gene97346:CDS
GGAGAAGTGGATCCAACTCA+TGG 0.605497 1.2:+85799384 MS.gene97346:CDS
AGAAGAAGAACCAACCTGGA+AGG 0.609441 1.2:-85796168 None:intergenic
GACGAGAGGGCACGTCGAAG+TGG 0.609993 1.2:+85797635 MS.gene97346:CDS
GGTGAATGAACTTCTGTCAA+AGG 0.612992 1.2:+85797656 MS.gene97346:CDS
TTATAACAGCAGCGACGAGA+GGG 0.613377 1.2:+85797622 MS.gene97346:CDS
AATGAACTTCTGTCAAAGGA+TGG 0.613527 1.2:+85797660 MS.gene97346:CDS
TCTGATGACTCTTCAGAGAG+AGG 0.615975 1.2:-85798714 None:intergenic
AATTAACAATGCCACAAACT+CGG 0.616650 1.2:+85798923 MS.gene97346:CDS
CGTCGGTCGGAGGAACGAGT+GGG 0.619749 1.2:+85799238 MS.gene97346:CDS
ACCAACCAAGGGACGAACTG+AGG 0.620407 1.2:+85798787 MS.gene97346:CDS
CTAACGAGCTCAACCAACCA+AGG 0.621035 1.2:+85798775 MS.gene97346:CDS
CTTCATCTAGCAGCTCAAAG+AGG 0.623399 1.2:+85796479 MS.gene97346:CDS
CTTCGTACATAGTCGTCGGT+CGG 0.624785 1.2:+85799225 MS.gene97346:CDS
CTTATAACAGCAGCGACGAG+AGG 0.631608 1.2:+85797621 MS.gene97346:CDS
TGCCACAAACTCGGTGACAG+TGG 0.632510 1.2:+85798932 MS.gene97346:CDS
AGTCATAGTGCCAATAACTC+CGG 0.636725 1.2:-85799300 None:intergenic
TGGCAACACAGCATTGCATG+TGG 0.637663 1.2:+85797914 MS.gene97346:CDS
GGACATCCTCTCTCGATATG+GGG 0.638757 1.2:+85798743 MS.gene97346:CDS
TGACTAGCAGCAATATGCAA+AGG 0.639675 1.2:-85796755 None:intergenic
ACAATATATCCAAAGAGCTG+AGG 0.644642 1.2:+85798883 MS.gene97346:CDS
AAGACCCTCAATTGGCTCGG+AGG 0.651684 1.2:+85797778 MS.gene97346:CDS
GCGGACGACGGAGATGGCGA+CGG 0.652416 1.2:-85796353 None:intergenic
GGCTTCTGTCTGTACCTCGG+TGG 0.655940 1.2:+85799190 MS.gene97346:CDS
GAAAACGGATCGATCAAGCA+GGG 0.663000 1.2:+85796408 MS.gene97346:CDS
TAACGATGATGGATCAGGAG+TGG 0.663853 1.2:+85799013 MS.gene97346:CDS
TAAGTGCCCCATATCGAGAG+AGG 0.665007 1.2:-85798749 None:intergenic
AGGTGATTAACAAGCTCATG+TGG 0.671742 1.2:+85799165 MS.gene97346:CDS
ACCGACGACTATGTACGAAG+AGG 0.681066 1.2:-85799222 None:intergenic
CACAAACTCGGTGACAGTGG+TGG 0.691648 1.2:+85798935 MS.gene97346:CDS
TAACGAGCTCAACCAACCAA+GGG 0.693605 1.2:+85798776 MS.gene97346:CDS
CTATGACTTACTATGTAGTG+AGG 0.708286 1.2:+85799315 MS.gene97346:CDS
CTAAGAGAACAAGATCCATG+AGG 0.720939 1.2:+85799339 MS.gene97346:CDS
AGAGCTGAGGAAACTCCACA+GGG 0.730372 1.2:+85798896 MS.gene97346:CDS
AAAAGGGCAGAGCTGTGACG+TGG 0.742175 1.2:+85797839 MS.gene97346:CDS
AGAGGCAATAAATGCCACCG+AGG 0.784742 1.2:-85799204 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTGTATTTTTTTTTTT+TGG + chr1.2:85797097-85797116 MS.gene97346:intron 10.0%
!! AAAAATTAAAAGAAAACAAG+AGG - chr1.2:85798507-85798526 None:intergenic 15.0%
!!! AATATTAGATTTTTCATTCA+AGG - chr1.2:85798580-85798599 None:intergenic 15.0%
!!! ATTTTGCTTTTTGTAAAAAT+GGG + chr1.2:85796880-85796899 MS.gene97346:intron 15.0%
!!! TATTTTGCTTTTTGTAAAAA+TGG + chr1.2:85796879-85796898 MS.gene97346:intron 15.0%
!!! TTTTTTTAAGAAGCTATTAA+TGG + chr1.2:85797308-85797327 MS.gene97346:intron 15.0%
!! AATTTAATCAGATATACTTC+TGG - chr1.2:85797196-85797215 None:intergenic 20.0%
!! GCAACTACTTAAATAAATAA+AGG - chr1.2:85798309-85798328 None:intergenic 20.0%
!! TAATACTACTACTACAAATA+TGG - chr1.2:85798081-85798100 None:intergenic 20.0%
!! TCATAATTGAGTTTCTTAAT+TGG - chr1.2:85797273-85797292 None:intergenic 20.0%
!!! TATTTTGAATGAATTGACTT+TGG + chr1.2:85796914-85796933 MS.gene97346:intron 20.0%
!!! TGTTATTTTGCTTTGAAAAT+TGG + chr1.2:85798383-85798402 MS.gene97346:intron 20.0%
!!! TTTTTTTTGGAACATATTCT+TGG + chr1.2:85797110-85797129 MS.gene97346:intron 20.0%
! AAACATGTTATATGAGACAA+GGG + chr1.2:85798449-85798468 MS.gene97346:intron 25.0%
! AACATCAAAACAAAGGAAAA+AGG - chr1.2:85796840-85796859 None:intergenic 25.0%
! AAGGTAAAACGATTTATGTT+TGG + chr1.2:85796951-85796970 MS.gene97346:intron 25.0%
! AGGTAAAACGATTTATGTTT+GGG + chr1.2:85796952-85796971 MS.gene97346:intron 25.0%
! ATTAACTTACTCGAACAAAT+CGG + chr1.2:85798031-85798050 MS.gene97346:intron 25.0%
! CTCAATTATGATGCTATTAA+TGG + chr1.2:85797282-85797301 MS.gene97346:intron 25.0%
! TTACAGTGAAGTAAAAAGAT+GGG - chr1.2:85796203-85796222 None:intergenic 25.0%
! TTGAGTATTTATCTTGCTTA+AGG + chr1.2:85797244-85797263 MS.gene97346:intron 25.0%
! TTTAAGTAGTTGCAAGTATA+AGG + chr1.2:85798316-85798335 MS.gene97346:intron 25.0%
! TTTACAGTGAAGTAAAAAGA+TGG - chr1.2:85796204-85796223 None:intergenic 25.0%
!! CAATTTTGTCTAGAAGTTTT+GGG + chr1.2:85798481-85798500 MS.gene97346:intron 25.0%
!! TATATTGTGGACATTTTTGT+TGG - chr1.2:85798871-85798890 None:intergenic 25.0%
!! TCAATTTTGTCTAGAAGTTT+TGG + chr1.2:85798480-85798499 MS.gene97346:intron 25.0%
!!! ATTGTTGTTTCTCAATTTCT+TGG + chr1.2:85798597-85798616 MS.gene97346:intron 25.0%
!!! GATATTGATTCTCAGATAAT+GGG + chr1.2:85796533-85796552 MS.gene97346:CDS 25.0%
!!! TGATATTGATTCTCAGATAA+TGG + chr1.2:85796532-85796551 MS.gene97346:CDS 25.0%
!!! TTTTCCTTTGTTTTGATGTT+GGG + chr1.2:85796840-85796859 MS.gene97346:intron 25.0%
!!! TTTTTCCTTTGTTTTGATGT+TGG + chr1.2:85796839-85796858 MS.gene97346:intron 25.0%
AAATCCCAACATCAAAACAA+AGG - chr1.2:85796847-85796866 None:intergenic 30.0%
AAGTCTCCAATATTGAAAAC+AGG + chr1.2:85798118-85798137 MS.gene97346:intron 30.0%
AATAAGACAACGTTGATGTT+TGG - chr1.2:85797413-85797432 None:intergenic 30.0%
AATTAACAATGCCACAAACT+CGG + chr1.2:85798923-85798942 MS.gene97346:CDS 30.0%
ACATAGCATTAACTCTACTA+CGG - chr1.2:85797379-85797398 None:intergenic 30.0%
ACTCAAAGAGATTCAGAAAA+AGG + chr1.2:85796287-85796306 MS.gene97346:CDS 30.0%
AGATTACTACAAAGAACAGA+AGG - chr1.2:85797509-85797528 None:intergenic 30.0%
ATCTAGTAAAACCTGAACAA+TGG - chr1.2:85797553-85797572 None:intergenic 30.0%
GAAACATGTTATATGAGACA+AGG + chr1.2:85798448-85798467 MS.gene97346:intron 30.0%
GTGCACACTACTTAAAAAAA+TGG - chr1.2:85798419-85798438 None:intergenic 30.0%
TACAGTGAAGTAAAAAGATG+GGG - chr1.2:85796202-85796221 None:intergenic 30.0%
TCTGAGAATCAATATCAAGA+AGG - chr1.2:85796529-85796548 None:intergenic 30.0%
TGAAACTAAAGCAGAGAAAA+GGG + chr1.2:85799136-85799155 MS.gene97346:CDS 30.0%
TGAAGAGTCATCAGATATAA+AGG + chr1.2:85798722-85798741 MS.gene97346:CDS 30.0%
TTAACTTACTCGAACAAATC+GGG + chr1.2:85798032-85798051 MS.gene97346:intron 30.0%
! AACATCAACGTTGTCTTATT+TGG + chr1.2:85797413-85797432 MS.gene97346:intron 30.0%
! AAGATTTTCAGCAATGTCAA+GGG - chr1.2:85798694-85798713 None:intergenic 30.0%
! GTTTCTAAAAAGAATCGATC+TGG + chr1.2:85796725-85796744 MS.gene97346:CDS 30.0%
! TAGCTACCTGTTTTCAATAT+TGG - chr1.2:85798127-85798146 None:intergenic 30.0%
! TTTAGTTTCACCTCTAACAA+GGG - chr1.2:85799126-85799145 None:intergenic 30.0%
!! CAATAGTTTTGCTTAAGCTT+GGG - chr1.2:85797581-85797600 None:intergenic 30.0%
!! TATTGCGCTTTTTACATCTT+TGG + chr1.2:85799079-85799098 MS.gene97346:CDS 30.0%
!! TTTGGCTAAAATTGAGTTGA+AGG + chr1.2:85796932-85796951 MS.gene97346:intron 30.0%
!!! ATGCAAAGCATTTTTTCCAT+TGG - chr1.2:85797709-85797728 None:intergenic 30.0%
!!! TTGTTTTGATGTTGGGATTT+TGG + chr1.2:85796847-85796866 MS.gene97346:intron 30.0%
AAGTAGTTGCAAGTATAAGG+TGG + chr1.2:85798319-85798338 MS.gene97346:intron 35.0%
AATGAACTTCTGTCAAAGGA+TGG + chr1.2:85797660-85797679 MS.gene97346:CDS 35.0%
AATGCATTTACGTTTGTGTC+TGG - chr1.2:85798651-85798670 None:intergenic 35.0%
ACAATATATCCAAAGAGCTG+AGG + chr1.2:85798883-85798902 MS.gene97346:CDS 35.0%
ACAGTGAAGTAAAAAGATGG+GGG - chr1.2:85796201-85796220 None:intergenic 35.0%
ACATGCTCAAAAGTAACTAG+GGG - chr1.2:85798550-85798569 None:intergenic 35.0%
CATTGCATATGGCTGTAAAA+GGG + chr1.2:85797823-85797842 MS.gene97346:CDS 35.0%
CCAAGCTTAAGCAAAACTAT+TGG + chr1.2:85797579-85797598 MS.gene97346:CDS 35.0%
CTATGACTTACTATGTAGTG+AGG + chr1.2:85799315-85799334 MS.gene97346:CDS 35.0%
CTTGAGTAGCTTCAATTTGT+GGG + chr1.2:85797452-85797471 MS.gene97346:intron 35.0%
GACATGCTCAAAAGTAACTA+GGG - chr1.2:85798551-85798570 None:intergenic 35.0%
GCTTCAAGTAGAATCAGTTA+TGG + chr1.2:85797050-85797069 MS.gene97346:intron 35.0%
GTGAAACTAAAGCAGAGAAA+AGG + chr1.2:85799135-85799154 MS.gene97346:CDS 35.0%
GTGAATGAAGAGAATGAACT+TGG + chr1.2:85796620-85796639 MS.gene97346:CDS 35.0%
GTGATAATATCCGGAGTTAT+TGG + chr1.2:85799290-85799309 MS.gene97346:CDS 35.0%
GTTATGCTTCCTGACAAATT+TGG + chr1.2:85797894-85797913 MS.gene97346:CDS 35.0%
GTTCAAATTACCCTTGTTAG+AGG + chr1.2:85799113-85799132 MS.gene97346:CDS 35.0%
TCAGCTCTTTGGATATATTG+TGG - chr1.2:85798884-85798903 None:intergenic 35.0%
TCAGTTATGGAGACAAAATC+AGG + chr1.2:85797063-85797082 MS.gene97346:intron 35.0%
TCATCACTATGTGTACTGTA+TGG - chr1.2:85798001-85798020 None:intergenic 35.0%
TCCTTTCAAACTCAGGAAAA+CGG + chr1.2:85796393-85796412 MS.gene97346:CDS 35.0%
TGACATGCTCAAAAGTAACT+AGG - chr1.2:85798552-85798571 None:intergenic 35.0%
TGCTACAAAAAATGCAAACG+AGG + chr1.2:85798151-85798170 MS.gene97346:intron 35.0%
TTGGAAATTGCAAGATCCAA+TGG + chr1.2:85797690-85797709 MS.gene97346:CDS 35.0%
TTGTTTACTGCTGCTGAAAA+GGG + chr1.2:85796653-85796672 MS.gene97346:CDS 35.0%
TTTGTTTACTGCTGCTGAAA+AGG + chr1.2:85796652-85796671 MS.gene97346:CDS 35.0%
! CTTTAGTTTCACCTCTAACA+AGG - chr1.2:85799127-85799146 None:intergenic 35.0%
! GAAGATTTTCAGCAATGTCA+AGG - chr1.2:85798695-85798714 None:intergenic 35.0%
! TACGCTTTTACGTTTATTGC+AGG + chr1.2:85796254-85796273 MS.gene97346:intron 35.0%
! TAGCTTCAATTTGTGGGTTA+TGG + chr1.2:85797458-85797477 MS.gene97346:intron 35.0%
! TTTTACATCTTTGGCTGTTG+TGG + chr1.2:85799088-85799107 MS.gene97346:CDS 35.0%
!! CCAATAGTTTTGCTTAAGCT+TGG - chr1.2:85797582-85797601 None:intergenic 35.0%
!!! GACATTTTTGTTGGTTCTCT+TGG - chr1.2:85798862-85798881 None:intergenic 35.0%
AAGTACGTGAAGCAAGTAAC+GGG + chr1.2:85796437-85796456 MS.gene97346:CDS 40.0%
AATTCGATCAACCTCGGAAT+TGG - chr1.2:85799426-85799445 None:intergenic 40.0%
ACGGAGATATTTCGGAAAGT+GGG - chr1.2:85796337-85796356 None:intergenic 40.0%
AGATAGAAGAAGAACCAACC+TGG - chr1.2:85796175-85796194 None:intergenic 40.0%
AGGCTTTCACGATTTCTGTA+TGG - chr1.2:85797749-85797768 None:intergenic 40.0%
AGGTGATTAACAAGCTCATG+TGG + chr1.2:85799165-85799184 MS.gene97346:CDS 40.0%
AGTCATAGTGCCAATAACTC+CGG - chr1.2:85799303-85799322 None:intergenic 40.0%
CATTGTTAATTCCTTCCCTG+TGG - chr1.2:85798914-85798933 None:intergenic 40.0%
CCACAAATTGAAGCTACTCA+AGG - chr1.2:85797454-85797473 None:intergenic 40.0%
CCTTGAGTAGCTTCAATTTG+TGG + chr1.2:85797451-85797470 MS.gene97346:intron 40.0%
CGCATAAATTCGATCAACCT+CGG - chr1.2:85799432-85799451 None:intergenic 40.0%
CTAAGAGAACAAGATCCATG+AGG + chr1.2:85799339-85799358 MS.gene97346:CDS 40.0%
GAAGTACGTGAAGCAAGTAA+CGG + chr1.2:85796436-85796455 MS.gene97346:CDS 40.0%
GATTAACAAGCTCATGTGGT+TGG + chr1.2:85799169-85799188 MS.gene97346:CDS 40.0%
GCATTGCATATGGCTGTAAA+AGG + chr1.2:85797822-85797841 MS.gene97346:CDS 40.0%
GCTACTCAAGGTCTAACAAT+TGG - chr1.2:85797442-85797461 None:intergenic 40.0%
GGGTCATCTTGATGTTGTTA+AGG + chr1.2:85796673-85796692 MS.gene97346:CDS 40.0%
GGTGAATGAACTTCTGTCAA+AGG + chr1.2:85797656-85797675 MS.gene97346:CDS 40.0%
GTTGGAGGAGTGATAATATC+CGG + chr1.2:85799281-85799300 MS.gene97346:CDS 40.0%
TGACTAGCAGCAATATGCAA+AGG - chr1.2:85796758-85796777 None:intergenic 40.0%
TTCATTTGCAGCCATTGTTC+AGG + chr1.2:85797539-85797558 MS.gene97346:intron 40.0%
TTGCATATTGCTGCTAGTCA+AGG + chr1.2:85796758-85796777 MS.gene97346:CDS 40.0%
! ATTCTGGTTACAGTTGTTGG+AGG + chr1.2:85799266-85799285 MS.gene97346:CDS 40.0%
! GCAATTCTGGTTACAGTTGT+TGG + chr1.2:85799263-85799282 MS.gene97346:CDS 40.0%
! GCTTTTACGTTTATTGCAGG+TGG + chr1.2:85796257-85796276 MS.gene97346:intron 40.0%
! TCCGTTTTCCTGAGTTTGAA+AGG - chr1.2:85796397-85796416 None:intergenic 40.0%
!! CAGATAATGGGTACTTTGAG+TGG + chr1.2:85796545-85796564 MS.gene97346:CDS 40.0%
AACCAGGAAAAAGCGAGTAG+AGG + chr1.2:85797938-85797957 MS.gene97346:CDS 45.0%
AAGGACATCCTCTCTCGATA+TGG + chr1.2:85798741-85798760 MS.gene97346:CDS 45.0%
AAGGGACGAACTGAGGAAAA+CGG + chr1.2:85798794-85798813 MS.gene97346:CDS 45.0%
ACCTCCAATTTCAACCTTCC+AGG + chr1.2:85796154-85796173 MS.gene97346:CDS 45.0%
ACCTGGAAGGTTGAAATTGG+AGG - chr1.2:85796158-85796177 None:intergenic 45.0%
AGAAGAAGAACCAACCTGGA+AGG - chr1.2:85796171-85796190 None:intergenic 45.0%
AGATGGCGACGGAGATATTT+CGG - chr1.2:85796345-85796364 None:intergenic 45.0%
AGCAGAGAAAAGGGTAGTTG+AGG + chr1.2:85799145-85799164 MS.gene97346:CDS 45.0%
AGGACATCCTCTCTCGATAT+GGG + chr1.2:85798742-85798761 MS.gene97346:CDS 45.0%
AGGGCAAACTGCATTGCATA+TGG + chr1.2:85797812-85797831 MS.gene97346:CDS 45.0%
CATTTACGTTTGTGTCTGGC+AGG - chr1.2:85798647-85798666 None:intergenic 45.0%
CCAACCTGGAAGGTTGAAAT+TGG - chr1.2:85796161-85796180 None:intergenic 45.0%
CCAATTTCAACCTTCCAGGT+TGG + chr1.2:85796158-85796177 MS.gene97346:intron 45.0%
CTATATTCACCGTACCTGGT+GGG + chr1.2:85798988-85799007 MS.gene97346:CDS 45.0%
CTCTGAATGATGCCATGAGT+TGG - chr1.2:85799399-85799418 None:intergenic 45.0%
CTGCTTCTCTTTCTTCCTCA+TGG - chr1.2:85799357-85799376 None:intergenic 45.0%
CTTCATCTAGCAGCTCAAAG+AGG + chr1.2:85796479-85796498 MS.gene97346:CDS 45.0%
GAAAACGGATCGATCAAGCA+GGG + chr1.2:85796408-85796427 MS.gene97346:CDS 45.0%
GAAAGATGTTCACACACAGC+TGG + chr1.2:85798830-85798849 MS.gene97346:CDS 45.0%
GACGGAGATATTTCGGAAAG+TGG - chr1.2:85796338-85796357 None:intergenic 45.0%
GAGTTTGAAAGGACTAGAGC+CGG - chr1.2:85796386-85796405 None:intergenic 45.0%
GCTCTAGTCCTTTCAAACTC+AGG + chr1.2:85796386-85796405 MS.gene97346:CDS 45.0%
GCTGTGTTGCCAAATTTGTC+AGG - chr1.2:85797906-85797925 None:intergenic 45.0%
TAACGAGCTCAACCAACCAA+GGG + chr1.2:85798776-85798795 MS.gene97346:CDS 45.0%
TATATTCACCGTACCTGGTG+GGG + chr1.2:85798989-85799008 MS.gene97346:CDS 45.0%
TCTGATGACTCTTCAGAGAG+AGG - chr1.2:85798717-85798736 None:intergenic 45.0%
TGTTATAAGTGGAGTGGCGT+TGG - chr1.2:85797610-85797629 None:intergenic 45.0%
TTATAACAGCAGCGACGAGA+GGG + chr1.2:85797622-85797641 MS.gene97346:CDS 45.0%
TTCACGATTTCTGTATGGCC+CGG - chr1.2:85797744-85797763 None:intergenic 45.0%
TTCAGAGTTCTCCAATTCCG+AGG + chr1.2:85799412-85799431 MS.gene97346:CDS 45.0%
TTTGCATTTAGCTGCTCGTC+CGG + chr1.2:85797722-85797741 MS.gene97346:CDS 45.0%
!! CAATGTCAAGGGCTGTTTTG+TGG - chr1.2:85798683-85798702 None:intergenic 45.0%
!! TAACGATGATGGATCAGGAG+TGG + chr1.2:85799013-85799032 MS.gene97346:CDS 45.0%
!!! TACCTCTACTCGCTTTTTCC+TGG - chr1.2:85797943-85797962 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTGAA+AGG - chr1.2:85797156-85797175 None:intergenic 5.0%
AAGAGCTGAGGAAACTCCAC+AGG + chr1.2:85798895-85798914 MS.gene97346:CDS 50.0%
ACCGACGACTATGTACGAAG+AGG - chr1.2:85799225-85799244 None:intergenic 50.0%
AGAAAGAGAAGCAGCTAGCC+AGG + chr1.2:85799363-85799382 MS.gene97346:CDS 50.0%
AGAGCTGAGGAAACTCCACA+GGG + chr1.2:85798896-85798915 MS.gene97346:CDS 50.0%
AGAGGCAATAAATGCCACCG+AGG - chr1.2:85799207-85799226 None:intergenic 50.0%
ATCGTTATCCCCACCAGGTA+CGG - chr1.2:85799000-85799019 None:intergenic 50.0%
CGCTGCTGTTATAAGTGGAG+TGG - chr1.2:85797616-85797635 None:intergenic 50.0%
CTAACGAGCTCAACCAACCA+AGG + chr1.2:85798775-85798794 MS.gene97346:CDS 50.0%
CTCGGAGGACTGACAAGAAA+GGG + chr1.2:85797793-85797812 MS.gene97346:CDS 50.0%
CTCGTCGCTGCTGTTATAAG+TGG - chr1.2:85797621-85797640 None:intergenic 50.0%
CTTATAACAGCAGCGACGAG+AGG + chr1.2:85797621-85797640 MS.gene97346:CDS 50.0%
CTTCGTACATAGTCGTCGGT+CGG + chr1.2:85799225-85799244 MS.gene97346:CDS 50.0%
GCAAAGACCCTCAATTGGCT+CGG + chr1.2:85797775-85797794 MS.gene97346:CDS 50.0%
GCAGCTCAAAGAGGTGATGT+TGG + chr1.2:85796488-85796507 MS.gene97346:CDS 50.0%
GCCTCTTCGTACATAGTCGT+CGG + chr1.2:85799221-85799240 MS.gene97346:CDS 50.0%
GCTATATTCACCGTACCTGG+TGG + chr1.2:85798987-85799006 MS.gene97346:CDS 50.0%
GCTCAGCAAAGACCCTCAAT+TGG + chr1.2:85797770-85797789 MS.gene97346:CDS 50.0%
GCTGCTAGTCAAGGACATCA+TGG + chr1.2:85796767-85796786 MS.gene97346:CDS 50.0%
GCTGCTATATTCACCGTACC+TGG + chr1.2:85798984-85799003 MS.gene97346:CDS 50.0%
GGAAAACGGATCGATCAAGC+AGG + chr1.2:85796407-85796426 MS.gene97346:CDS 50.0%
GGACATCCTCTCTCGATATG+GGG + chr1.2:85798743-85798762 MS.gene97346:CDS 50.0%
GGAGAAGTGGATCCAACTCA+TGG + chr1.2:85799384-85799403 MS.gene97346:CDS 50.0%
GTCAAAGGATGGCAGCTTGT+TGG + chr1.2:85797671-85797690 MS.gene97346:CDS 50.0%
GTGGAGTTTCCTCAGCTCTT+TGG - chr1.2:85798895-85798914 None:intergenic 50.0%
TAAGTGCCCCATATCGAGAG+AGG - chr1.2:85798752-85798771 None:intergenic 50.0%
TGGCAACACAGCATTGCATG+TGG + chr1.2:85797914-85797933 MS.gene97346:CDS 50.0%
TTGAGGGTCTTTGCTGAGCA+AGG - chr1.2:85797769-85797788 None:intergenic 50.0%
TTGCATTTAGCTGCTCGTCC+GGG + chr1.2:85797723-85797742 MS.gene97346:CDS 50.0%
! ATAAGTGGAGTGGCGTTGGA+TGG - chr1.2:85797606-85797625 None:intergenic 50.0%
! GTTGGCTTCTGTCTGTACCT+CGG + chr1.2:85799187-85799206 MS.gene97346:CDS 50.0%
! GTTTTCCTCAGTTCGTCCCT+TGG - chr1.2:85798795-85798814 None:intergenic 50.0%
! TCGGAAAGTGGGTTCTGTGT+TGG - chr1.2:85796326-85796345 None:intergenic 50.0%
! TGAGTTGGATCCACTTCTCC+TGG - chr1.2:85799384-85799403 None:intergenic 50.0%
!! GGGGATAACGATGATGGATC+AGG + chr1.2:85799008-85799027 MS.gene97346:CDS 50.0%
AAAAGGGCAGAGCTGTGACG+TGG + chr1.2:85797839-85797858 MS.gene97346:CDS 55.0%
AAGCAGCTAGCCAGGAGAAG+TGG + chr1.2:85799371-85799390 MS.gene97346:CDS 55.0%
ACCAACCAAGGGACGAACTG+AGG + chr1.2:85798787-85798806 MS.gene97346:CDS 55.0%
CACCACTGTCACCGAGTTTG+TGG - chr1.2:85798937-85798956 None:intergenic 55.0%
CAGCATTGCATGTGGCAACC+AGG + chr1.2:85797922-85797941 MS.gene97346:CDS 55.0%
CAGTCCTCCGAGCCAATTGA+GGG - chr1.2:85797785-85797804 None:intergenic 55.0%
CCATCATCGTTATCCCCACC+AGG - chr1.2:85799005-85799024 None:intergenic 55.0%
CCTGGTGGGGATAACGATGA+TGG + chr1.2:85799002-85799021 MS.gene97346:CDS 55.0%
CTGAGGAAACTCCACAGGGA+AGG + chr1.2:85798900-85798919 MS.gene97346:CDS 55.0%
GCTCGGAGGACTGACAAGAA+AGG + chr1.2:85797792-85797811 MS.gene97346:CDS 55.0%
TCAGTCCTCCGAGCCAATTG+AGG - chr1.2:85797786-85797805 None:intergenic 55.0%
TCCTCAGTTCGTCCCTTGGT+TGG - chr1.2:85798791-85798810 None:intergenic 55.0%
! CACAAACTCGGTGACAGTGG+TGG + chr1.2:85798935-85798954 MS.gene97346:CDS 55.0%
! TGCCACAAACTCGGTGACAG+TGG + chr1.2:85798932-85798951 MS.gene97346:CDS 55.0%
!! AAGACCCTCAATTGGCTCGG+AGG + chr1.2:85797778-85797797 MS.gene97346:CDS 55.0%
!! GAACGAGTGGGCTGCAATTC+TGG + chr1.2:85799250-85799269 MS.gene97346:CDS 55.0%
CGTACATAGTCGTCGGTCGG+AGG + chr1.2:85799228-85799247 MS.gene97346:CDS 60.0%
GGCTTCTGTCTGTACCTCGG+TGG + chr1.2:85799190-85799209 MS.gene97346:CDS 60.0%
CGTCGGTCGGAGGAACGAGT+GGG + chr1.2:85799238-85799257 MS.gene97346:CDS 65.0%
TCGTCGGTCGGAGGAACGAG+TGG + chr1.2:85799237-85799256 MS.gene97346:CDS 65.0%
! GACGAGAGGGCACGTCGAAG+TGG + chr1.2:85797635-85797654 MS.gene97346:CDS 65.0%
GCCATCTCCGTCGTCCGCGA+CGG + chr1.2:85796358-85796377 MS.gene97346:CDS 70.0%
GCGGACGACGGAGATGGCGA+CGG - chr1.2:85796356-85796375 None:intergenic 70.0%
GACTAGAGCCGGCGCCGTCG+CGG - chr1.2:85796375-85796394 None:intergenic 75.0%
GCCGTCGCGGACGACGGAGA+TGG - chr1.2:85796362-85796381 None:intergenic 75.0%
! TCCGTCGTCCGCGACGGCGC+CGG + chr1.2:85796364-85796383 MS.gene97346:CDS 80.0%
! GCCGGCGCCGTCGCGGACGA+CGG - chr1.2:85796368-85796387 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 85796151 85799457 85796151 ID=MS.gene97346
chr1.2 mRNA 85796151 85799457 85796151 ID=MS.gene97346.t1;Parent=MS.gene97346
chr1.2 exon 85796151 85796175 85796151 ID=MS.gene97346.t1.exon1;Parent=MS.gene97346.t1
chr1.2 CDS 85796151 85796175 85796151 ID=cds.MS.gene97346.t1;Parent=MS.gene97346.t1
chr1.2 exon 85796276 85796788 85796276 ID=MS.gene97346.t1.exon2;Parent=MS.gene97346.t1
chr1.2 CDS 85796276 85796788 85796276 ID=cds.MS.gene97346.t1;Parent=MS.gene97346.t1
chr1.2 exon 85797550 85797959 85797550 ID=MS.gene97346.t1.exon3;Parent=MS.gene97346.t1
chr1.2 CDS 85797550 85797959 85797550 ID=cds.MS.gene97346.t1;Parent=MS.gene97346.t1
chr1.2 exon 85798624 85799457 85798624 ID=MS.gene97346.t1.exon4;Parent=MS.gene97346.t1
chr1.2 CDS 85798624 85799457 85798624 ID=cds.MS.gene97346.t1;Parent=MS.gene97346.t1
Gene Sequence

>MS.gene97346

ATGACCTCCAATTTCAACCTTCCAGGTTGGTTCTTCTTCTATCTGCACCCCCATCTTTTTACTTCACTGTAAACTGTAAATTTTACAGTTTTTTTTTTTTTACTACGCTTTTACGTTTATTGCAGGTGGAGCTCAAACTCAAAGAGATTCAGAAAAAGGAACGATGATGACACCAACACAGAACCCACTTTCCGAAATATCTCCGTCGCCATCTCCGTCGTCCGCGACGGCGCCGGCTCTAGTCCTTTCAAACTCAGGAAAACGGATCGATCAAGCAGGGAAGAAGAAGTACGTGAAGCAAGTAACGGGTCGTCACAACGACACAGAGCTTCATCTAGCAGCTCAAAGAGGTGATGTTGGTGCTGTGAGACAGATCCTTCTTGATATTGATTCTCAGATAATGGGTACTTTGAGTGGTGATGATGATGTTGATCTTAACGCTGAGATTGCTGAAGTTCGTGCTCTTGTTGTGAATGAAGAGAATGAACTTGGTGAAACTGCTTTGTTTACTGCTGCTGAAAAGGGTCATCTTGATGTTGTTAAGGAGTTGTTGAAACATTCAACTCTTCAAACTGTTTCTAAAAAGAATCGATCTGGTTTTGATCCTTTGCATATTGCTGCTAGTCAAGGACATCATGGTATGACTTCTTGTATTCAATGTCTTGTCAGATGCTCTGTTTTTATTACCTTTTTCCTTTGTTTTGATGTTGGGATTTTGGAAATTTCATTATTTTGCTTTTTGTAAAAATGGGTGAGAAAAATTTATTTTGAATGAATTGACTTTGGCTAAAATTGAGTTGAAGGTAAAACGATTTATGTTTGGGTACATTCATCTAAGCGAGTTGAACAATAAATTTGAGTTTAAAAATCAATTCTAGAATAAGAAGCTACAATTTCTAGCTTCAAGTAGAATCAGTTATGGAGACAAAATCAGGATGTTTGAGTGAGTTTTGTATTTTTTTTTTTTGGAACATATTCTTGGTTTCAACTTTAGTAGAAGAACCTTTCAAAAAAAAAAAAAAAAAACTTTAGTAGAAGAACACCAGAAGTATATCTGATTAAATTTGTAATTTATTAAGTTATGAGCTGACTATTGAGTATTTATCTTGCTTAAGGTATCCAATTAAGAAACTCAATTATGATGCTATTAATGGACTTTTTTTTAAGAAGCTATTAATGGAAATTTTAAGAGAAATGTTATGACACGAGTTTTAATATTATTAATCCGTAGTAGAGTTAATGCTATGTAGACAAGTCTGCCAAACATCAACGTTGTCTTATTTGGATTCCAATTGTTAGACCTTGAGTAGCTTCAATTTGTGGGTTATGGTGTTCTTGAAAATGTGAGTACTTTGCCTTCTGTTCTTTGTAGTAATCTGTTGTGAATTTTCATTTGCAGCCATTGTTCAGGTTTTACTAGATTATGACCCAAGCTTAAGCAAAACTATTGGTCCATCCAACGCCACTCCACTTATAACAGCAGCGACGAGAGGGCACGTCGAAGTGGTGAATGAACTTCTGTCAAAGGATGGCAGCTTGTTGGAAATTGCAAGATCCAATGGAAAAAATGCTTTGCATTTAGCTGCTCGTCCGGGCCATACAGAAATCGTGAAAGCCTTGCTCAGCAAAGACCCTCAATTGGCTCGGAGGACTGACAAGAAAGGGCAAACTGCATTGCATATGGCTGTAAAAGGGCAGAGCTGTGACGTGGTGAAATTGCTTCTTGATGCAGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGCAACACAGCATTGCATGTGGCAACCAGGAAAAAGCGAGTAGAGGTATGTAACATTAGCACAGCATTACAAGCAGTCAAGCACCATACAGTACACATAGTGATGAAGTAAAACAAATTAACTTACTCGAACAAATCGGGCTCACTTGACATAGCTAAATATGCCATATTTGTAGTAGTAGTATTAGTTATAGAATGATTAACAAGTCTCCAATATTGAAAACAGGTAGCTAATTATGCTACAAAAAATGCAAACGAGGCTGCTAATTTGTTATTATATTTTATATTCTCTGTCTCATATTATGTGTCTCATAATTCATTTGAATTTTTGTCTCAAATTATTTGTCATTTTATAATATCAATACAATATTTATTACTTTTTTCAAAAGTTACCTTTATTTATTTAAGTAGTTGCAAGTATAAGGTGGACAAATAATAAATGAAGTACAATGATATTTTAGTCTCAACATGTTATTTTGCTTTGAAAATTGGTATAAGTAAACCATTTTTTTAAGTAGTGTGCACATTACTAATGAAACATGTTATATGAGACAAGGGATGTAACTTCAATTTTGTCTAGAAGTTTTGGGCCTCTTGTTTTCTTTTAATTTTTATACATGAAAAACACTTGTTCCCCTAGTTACTTTTGAGCATGTCATTGTTCCTTGAATGAAAAATCTAATATTGTTGTTTCTCAATTTCTTGGACAGATAGTGAATGAGTTGTTACTCCTGCCAGACACAAACGTAAATGCATTAACACGAGACCACAAAACAGCCCTTGACATTGCTGAAAATCTTCCTCTCTCTGAAGAGTCATCAGATATAAAGGACATCCTCTCTCGATATGGGGCACTTAGAGCTAACGAGCTCAACCAACCAAGGGACGAACTGAGGAAAACGGTTACACAAATTAAGAAAGATGTTCACACACAGCTGGAACAAACCAAGAGAACCAACAAAAATGTCCACAATATATCCAAAGAGCTGAGGAAACTCCACAGGGAAGGAATTAACAATGCCACAAACTCGGTGACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACCGTACCTGGTGGGGATAACGATGATGGATCAGGAGTGGTAGCGAGTTATTCTGCTTTTAAAATTTTCTTCATATTCAATGCTATTGCGCTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCCTTGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTAGTTGAGGTGATTAACAAGCTCATGTGGTTGGCTTCTGTCTGTACCTCGGTGGCATTTATTGCCTCTTCGTACATAGTCGTCGGTCGGAGGAACGAGTGGGCTGCAATTCTGGTTACAGTTGTTGGAGGAGTGATAATATCCGGAGTTATTGGCACTATGACTTACTATGTAGTGAGGTCTAAGAGAACAAGATCCATGAGGAAGAAAGAGAAGCAGCTAGCCAGGAGAAGTGGATCCAACTCATGGCATCATTCAGAGTTCTCCAATTCCGAGGTTGATCGAATTTATGCGCTCTAA

Protein sequence

>MS.gene97346.t1

MTSNFNLPGGAQTQRDSEKGTMMTPTQNPLSEISPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDIDSQIMGTLSGDDDVDLNAEIAEVRALVVNEENELGETALFTAAEKGHLDVVKELLKHSTLQTVSKKNRSGFDPLHIAASQGHHAIVQVLLDYDPSLSKTIGPSNATPLITAATRGHVEVVNELLSKDGSLLEIARSNGKNALHLAARPGHTEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLLLPDTNVNALTRDHKTALDIAENLPLSEESSDIKDILSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNDDGSGVVASYSAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRNEWAAILVTVVGGVIISGVIGTMTYYVVRSKRTRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAL