Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90825.t1 | XP_013470475.1 | 99.2 | 593 | 5 | 0 | 1 | 593 | 1 | 593 | 4.30E-204 | 721.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90825.t1 | Q9C7A2 | 78.5 | 585 | 117 | 4 | 14 | 593 | 10 | 590 | 1.2e-143 | 511.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90825.t1 | A0A072VSV9 | 99.2 | 593 | 5 | 0 | 1 | 593 | 1 | 593 | 3.1e-204 | 721.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056229 | MS.gene90825 | 0.809079 | 2.26E-50 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90825.t1 | MTR_1g115575 | 99.157 | 593 | 5 | 0 | 1 | 593 | 1 | 593 | 0.0 | 1201 |
MS.gene90825.t1 | MTR_7g100430 | 73.042 | 549 | 141 | 4 | 46 | 593 | 40 | 582 | 0.0 | 791 |
MS.gene90825.t1 | MTR_2g096190 | 46.209 | 554 | 253 | 9 | 61 | 593 | 15 | 544 | 3.25e-147 | 436 |
MS.gene90825.t1 | MTR_4g062100 | 47.126 | 522 | 237 | 8 | 58 | 563 | 16 | 514 | 3.06e-145 | 431 |
MS.gene90825.t1 | MTR_7g117620 | 45.421 | 546 | 255 | 7 | 61 | 593 | 31 | 546 | 9.83e-137 | 409 |
MS.gene90825.t1 | MTR_1g032100 | 45.436 | 482 | 246 | 7 | 127 | 593 | 52 | 531 | 7.15e-128 | 386 |
MS.gene90825.t1 | MTR_7g100390 | 42.620 | 542 | 273 | 7 | 66 | 593 | 3 | 520 | 3.77e-125 | 379 |
MS.gene90825.t1 | MTR_8g105260 | 43.659 | 481 | 256 | 4 | 127 | 593 | 59 | 538 | 7.96e-125 | 378 |
MS.gene90825.t1 | MTR_1g069110 | 27.021 | 433 | 263 | 12 | 170 | 559 | 18 | 440 | 1.39e-27 | 116 |
MS.gene90825.t1 | MTR_2g101310 | 22.951 | 610 | 356 | 14 | 4 | 567 | 69 | 610 | 1.17e-26 | 115 |
MS.gene90825.t1 | MTR_2g101310 | 25.403 | 248 | 184 | 1 | 96 | 343 | 1 | 247 | 1.37e-20 | 96.3 |
MS.gene90825.t1 | MTR_3g105650 | 22.707 | 458 | 298 | 12 | 138 | 577 | 8 | 427 | 5.03e-25 | 108 |
MS.gene90825.t1 | MTR_2g101320 | 28.896 | 308 | 202 | 5 | 74 | 367 | 37 | 341 | 2.31e-21 | 99.0 |
MS.gene90825.t1 | MTR_2g101320 | 26.949 | 449 | 250 | 15 | 130 | 522 | 137 | 563 | 2.20e-20 | 95.9 |
MS.gene90825.t1 | MTR_2g101320 | 26.471 | 238 | 173 | 2 | 107 | 343 | 11 | 247 | 5.61e-19 | 91.3 |
MS.gene90825.t1 | MTR_2g101310 | 25.403 | 248 | 184 | 1 | 96 | 343 | 1 | 247 | 3.34e-20 | 94.4 |
MS.gene90825.t1 | MTR_2g101310 | 21.912 | 502 | 281 | 12 | 4 | 462 | 69 | 502 | 4.77e-11 | 65.9 |
MS.gene90825.t1 | MTR_8g467780 | 25.469 | 373 | 214 | 10 | 76 | 445 | 10 | 321 | 2.10e-19 | 91.7 |
MS.gene90825.t1 | MTR_2g096760 | 31.707 | 205 | 121 | 4 | 134 | 322 | 14 | 215 | 2.62e-19 | 91.3 |
MS.gene90825.t1 | MTR_8g073260 | 26.756 | 299 | 178 | 6 | 169 | 452 | 46 | 318 | 5.15e-19 | 90.5 |
MS.gene90825.t1 | MTR_8g066670 | 23.622 | 381 | 230 | 9 | 138 | 482 | 1078 | 1433 | 1.92e-17 | 87.0 |
MS.gene90825.t1 | MTR_1g059930 | 27.090 | 299 | 177 | 8 | 169 | 452 | 47 | 319 | 4.99e-17 | 84.3 |
MS.gene90825.t1 | MTR_8g068990 | 24.860 | 358 | 194 | 11 | 169 | 489 | 47 | 366 | 2.21e-16 | 82.4 |
MS.gene90825.t1 | MTR_5g085830 | 26.098 | 410 | 256 | 12 | 169 | 562 | 312 | 690 | 3.11e-16 | 82.8 |
MS.gene90825.t1 | MTR_7g451420 | 24.611 | 321 | 206 | 6 | 138 | 445 | 12 | 309 | 3.27e-16 | 80.5 |
MS.gene90825.t1 | MTR_5g085810 | 27.128 | 376 | 238 | 11 | 169 | 533 | 338 | 688 | 4.82e-16 | 82.0 |
MS.gene90825.t1 | MTR_5g085480 | 24.319 | 477 | 310 | 14 | 128 | 562 | 207 | 674 | 8.53e-16 | 81.3 |
MS.gene90825.t1 | MTR_5g085480 | 24.319 | 477 | 310 | 14 | 128 | 562 | 47 | 514 | 9.87e-16 | 80.9 |
MS.gene90825.t1 | MTR_8g072510 | 23.653 | 427 | 245 | 13 | 169 | 556 | 45 | 429 | 1.03e-15 | 80.1 |
MS.gene90825.t1 | MTR_4g063830 | 30.288 | 208 | 124 | 7 | 132 | 322 | 13 | 216 | 1.20e-15 | 80.1 |
MS.gene90825.t1 | MTR_8g069880 | 22.636 | 349 | 206 | 8 | 169 | 480 | 42 | 363 | 2.22e-15 | 79.3 |
MS.gene90825.t1 | MTR_7g099570 | 27.917 | 240 | 158 | 6 | 135 | 361 | 9 | 246 | 5.18e-15 | 78.6 |
MS.gene90825.t1 | MTR_7g021090 | 23.099 | 355 | 208 | 9 | 169 | 488 | 44 | 368 | 2.61e-14 | 75.5 |
MS.gene90825.t1 | MTR_8g040930 | 23.684 | 342 | 198 | 10 | 177 | 480 | 2 | 318 | 3.66e-14 | 75.1 |
MS.gene90825.t1 | MTR_8g041240 | 23.684 | 342 | 198 | 10 | 177 | 480 | 2 | 318 | 3.66e-14 | 75.1 |
MS.gene90825.t1 | MTR_8g062410 | 25.000 | 336 | 200 | 10 | 138 | 453 | 13 | 316 | 8.01e-14 | 74.3 |
MS.gene90825.t1 | MTR_5g043640 | 33.708 | 178 | 111 | 5 | 132 | 306 | 20 | 193 | 1.33e-13 | 71.2 |
MS.gene90825.t1 | MTR_3g016210 | 24.917 | 301 | 178 | 9 | 169 | 445 | 45 | 321 | 3.56e-13 | 72.4 |
MS.gene90825.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 262 | 443 | 3.64e-13 | 72.4 |
MS.gene90825.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 288 | 469 | 3.80e-13 | 72.4 |
MS.gene90825.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 315 | 496 | 4.56e-13 | 72.4 |
MS.gene90825.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 290 | 471 | 4.64e-13 | 72.0 |
MS.gene90825.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 147 | 328 | 5.07e-13 | 71.2 |
MS.gene90825.t1 | MTR_3g055310 | 29.670 | 182 | 106 | 5 | 383 | 542 | 210 | 391 | 5.09e-13 | 71.6 |
MS.gene90825.t1 | MTR_8g039620 | 21.809 | 376 | 234 | 9 | 169 | 509 | 49 | 399 | 6.06e-13 | 71.6 |
MS.gene90825.t1 | MTR_8g080080 | 26.183 | 317 | 194 | 9 | 72 | 352 | 77 | 389 | 8.19e-13 | 71.6 |
MS.gene90825.t1 | MTR_1g112830 | 29.952 | 207 | 137 | 5 | 120 | 322 | 120 | 322 | 1.45e-12 | 70.9 |
MS.gene90825.t1 | MTR_3g085830 | 28.342 | 187 | 125 | 3 | 131 | 309 | 105 | 290 | 2.05e-12 | 70.5 |
MS.gene90825.t1 | MTR_3g085830 | 27.208 | 283 | 173 | 9 | 100 | 355 | 108 | 384 | 3.83e-12 | 69.7 |
MS.gene90825.t1 | MTR_5g028190 | 25.284 | 352 | 185 | 11 | 213 | 544 | 213 | 506 | 1.57e-11 | 67.4 |
MS.gene90825.t1 | MTR_6g027840 | 27.935 | 247 | 158 | 7 | 90 | 323 | 125 | 364 | 2.13e-11 | 67.0 |
MS.gene90825.t1 | MTR_4g116160 | 30.319 | 188 | 127 | 4 | 135 | 322 | 40 | 223 | 2.69e-11 | 67.0 |
MS.gene90825.t1 | MTR_4g116160 | 30.319 | 188 | 127 | 4 | 135 | 322 | 40 | 223 | 3.40e-11 | 66.2 |
MS.gene90825.t1 | MTR_4g129470 | 30.392 | 204 | 98 | 6 | 128 | 294 | 9 | 205 | 4.01e-11 | 66.2 |
MS.gene90825.t1 | MTR_4g021880 | 25.806 | 217 | 145 | 5 | 121 | 322 | 86 | 301 | 5.80e-11 | 65.1 |
MS.gene90825.t1 | MTR_1g089180 | 28.947 | 228 | 134 | 8 | 114 | 317 | 198 | 421 | 7.48e-11 | 65.1 |
MS.gene90825.t1 | MTR_2g438740 | 21.257 | 541 | 333 | 15 | 53 | 545 | 57 | 552 | 8.22e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90825.t1 | AT3G12360 | 80.684 | 585 | 104 | 4 | 14 | 593 | 10 | 590 | 0.0 | 954 |
MS.gene90825.t1 | AT3G12360 | 80.895 | 581 | 102 | 4 | 18 | 593 | 2 | 578 | 0.0 | 950 |
MS.gene90825.t1 | AT3G09550 | 71.502 | 586 | 148 | 3 | 24 | 593 | 25 | 607 | 0.0 | 833 |
MS.gene90825.t1 | AT3G09550 | 71.502 | 586 | 148 | 3 | 24 | 593 | 25 | 607 | 0.0 | 833 |
MS.gene90825.t1 | AT3G09550 | 71.502 | 586 | 148 | 3 | 24 | 593 | 32 | 614 | 0.0 | 832 |
MS.gene90825.t1 | AT2G31820 | 43.534 | 549 | 271 | 7 | 60 | 593 | 138 | 662 | 7.75e-138 | 416 |
MS.gene90825.t1 | AT1G05640 | 44.404 | 554 | 270 | 7 | 56 | 593 | 96 | 627 | 7.37e-136 | 410 |
MS.gene90825.t1 | AT5G60070 | 46.595 | 558 | 244 | 13 | 61 | 593 | 20 | 548 | 3.29e-135 | 405 |
MS.gene90825.t1 | AT2G01680 | 43.110 | 508 | 273 | 8 | 99 | 593 | 28 | 532 | 2.18e-129 | 390 |
MS.gene90825.t1 | AT1G07710 | 44.565 | 552 | 264 | 5 | 61 | 593 | 15 | 543 | 2.36e-129 | 390 |
MS.gene90825.t1 | AT1G07710 | 44.565 | 552 | 264 | 5 | 61 | 593 | 15 | 543 | 2.36e-129 | 390 |
MS.gene90825.t1 | AT5G02620 | 43.774 | 514 | 248 | 7 | 61 | 556 | 5 | 495 | 4.11e-124 | 376 |
MS.gene90825.t1 | AT5G02620 | 43.774 | 514 | 248 | 7 | 61 | 556 | 5 | 495 | 4.11e-124 | 376 |
MS.gene90825.t1 | AT5G02620 | 43.774 | 514 | 248 | 7 | 61 | 556 | 5 | 495 | 4.11e-124 | 376 |
MS.gene90825.t1 | AT5G02620 | 41.899 | 537 | 248 | 8 | 61 | 556 | 5 | 518 | 1.12e-118 | 363 |
MS.gene90825.t1 | AT5G02620 | 41.899 | 537 | 248 | 8 | 61 | 556 | 5 | 518 | 1.12e-118 | 363 |
MS.gene90825.t1 | AT1G10340 | 25.202 | 496 | 309 | 12 | 111 | 552 | 51 | 538 | 2.23e-34 | 138 |
MS.gene90825.t1 | AT5G54710 | 27.308 | 520 | 284 | 17 | 68 | 552 | 97 | 557 | 1.47e-33 | 135 |
MS.gene90825.t1 | AT5G54710 | 27.308 | 520 | 284 | 17 | 68 | 552 | 142 | 602 | 2.30e-33 | 135 |
MS.gene90825.t1 | AT1G10340 | 24.593 | 492 | 313 | 11 | 111 | 552 | 51 | 534 | 2.36e-33 | 135 |
MS.gene90825.t1 | AT1G34050 | 26.145 | 524 | 294 | 15 | 108 | 554 | 28 | 535 | 6.25e-33 | 134 |
MS.gene90825.t1 | AT2G24600 | 26.892 | 502 | 290 | 18 | 72 | 538 | 70 | 529 | 3.52e-32 | 131 |
MS.gene90825.t1 | AT2G24600 | 26.892 | 502 | 290 | 18 | 72 | 538 | 70 | 529 | 3.52e-32 | 131 |
MS.gene90825.t1 | AT4G03500 | 26.047 | 549 | 280 | 17 | 58 | 522 | 54 | 560 | 2.27e-30 | 126 |
MS.gene90825.t1 | AT4G03500 | 26.047 | 549 | 280 | 17 | 58 | 522 | 54 | 560 | 2.27e-30 | 126 |
MS.gene90825.t1 | AT4G03500 | 26.047 | 549 | 280 | 17 | 58 | 522 | 77 | 583 | 2.41e-30 | 126 |
MS.gene90825.t1 | AT1G03670 | 25.581 | 516 | 328 | 9 | 74 | 562 | 107 | 593 | 2.54e-26 | 114 |
MS.gene90825.t1 | AT4G03490 | 27.674 | 430 | 267 | 12 | 133 | 551 | 180 | 576 | 5.93e-25 | 110 |
MS.gene90825.t1 | AT4G03490 | 27.830 | 424 | 262 | 12 | 133 | 545 | 170 | 560 | 7.88e-25 | 109 |
MS.gene90825.t1 | AT4G03490 | 27.830 | 424 | 262 | 12 | 133 | 545 | 180 | 570 | 8.09e-25 | 109 |
MS.gene90825.t1 | AT4G03460 | 26.406 | 409 | 256 | 8 | 128 | 522 | 158 | 535 | 8.30e-24 | 106 |
MS.gene90825.t1 | AT4G03460 | 26.406 | 409 | 256 | 8 | 128 | 522 | 190 | 567 | 8.97e-24 | 106 |
MS.gene90825.t1 | AT4G03490 | 24.915 | 586 | 332 | 18 | 65 | 574 | 9 | 562 | 1.02e-23 | 106 |
MS.gene90825.t1 | AT5G50140 | 22.913 | 515 | 297 | 16 | 126 | 563 | 22 | 513 | 1.04e-23 | 105 |
MS.gene90825.t1 | AT4G03490 | 25.277 | 542 | 318 | 15 | 65 | 551 | 19 | 528 | 2.41e-23 | 105 |
MS.gene90825.t1 | AT5G54700 | 28.435 | 313 | 159 | 9 | 223 | 523 | 20 | 279 | 1.38e-22 | 99.8 |
MS.gene90825.t1 | AT4G10720 | 24.096 | 415 | 258 | 12 | 169 | 559 | 40 | 421 | 3.30e-22 | 100 |
MS.gene90825.t1 | AT5G54700 | 27.809 | 356 | 182 | 12 | 202 | 523 | 2 | 316 | 6.72e-22 | 99.8 |
MS.gene90825.t1 | AT4G10720 | 25.076 | 327 | 210 | 6 | 169 | 477 | 40 | 349 | 1.95e-21 | 97.4 |
MS.gene90825.t1 | AT4G14390 | 24.722 | 449 | 281 | 11 | 128 | 556 | 226 | 637 | 2.14e-20 | 95.9 |
MS.gene90825.t1 | AT4G14390 | 24.722 | 449 | 281 | 11 | 128 | 556 | 245 | 656 | 2.62e-20 | 95.5 |
MS.gene90825.t1 | AT4G14390 | 24.889 | 450 | 280 | 12 | 128 | 556 | 245 | 657 | 2.97e-20 | 95.5 |
MS.gene90825.t1 | AT4G03480 | 26.076 | 395 | 232 | 9 | 118 | 482 | 295 | 659 | 1.56e-19 | 93.2 |
MS.gene90825.t1 | AT4G03480 | 26.076 | 395 | 232 | 9 | 118 | 482 | 292 | 656 | 1.64e-19 | 93.2 |
MS.gene90825.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
MS.gene90825.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
MS.gene90825.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
MS.gene90825.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
MS.gene90825.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
MS.gene90825.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
MS.gene90825.t1 | AT4G05040 | 28.736 | 348 | 199 | 9 | 118 | 447 | 211 | 527 | 8.96e-19 | 90.5 |
MS.gene90825.t1 | AT5G15500 | 23.427 | 461 | 288 | 15 | 130 | 559 | 1 | 427 | 2.69e-18 | 88.2 |
MS.gene90825.t1 | AT2G24600 | 26.420 | 405 | 232 | 14 | 72 | 450 | 70 | 434 | 1.74e-17 | 86.3 |
MS.gene90825.t1 | AT2G24600 | 26.420 | 405 | 232 | 14 | 72 | 450 | 70 | 434 | 1.74e-17 | 86.3 |
MS.gene90825.t1 | AT4G03450 | 24.505 | 555 | 306 | 17 | 58 | 528 | 45 | 570 | 1.80e-17 | 86.7 |
MS.gene90825.t1 | AT5G51160 | 25.000 | 352 | 198 | 8 | 157 | 478 | 38 | 353 | 2.37e-17 | 85.5 |
MS.gene90825.t1 | AT4G03450 | 24.505 | 555 | 306 | 17 | 58 | 528 | 45 | 570 | 5.25e-17 | 85.1 |
MS.gene90825.t1 | AT4G03470 | 26.044 | 503 | 294 | 18 | 77 | 542 | 157 | 618 | 1.33e-16 | 84.0 |
MS.gene90825.t1 | AT3G04140 | 27.622 | 286 | 160 | 8 | 100 | 342 | 105 | 386 | 2.91e-16 | 82.8 |
MS.gene90825.t1 | AT1G14500 | 22.769 | 325 | 215 | 5 | 169 | 475 | 40 | 346 | 3.82e-15 | 78.6 |
MS.gene90825.t1 | AT2G03430 | 34.659 | 176 | 106 | 5 | 135 | 306 | 16 | 186 | 8.47e-15 | 74.7 |
MS.gene90825.t1 | AT4G14390 | 26.748 | 329 | 195 | 8 | 128 | 443 | 226 | 521 | 4.90e-13 | 72.4 |
MS.gene90825.t1 | AT5G54620 | 29.570 | 186 | 119 | 2 | 169 | 342 | 40 | 225 | 8.05e-13 | 71.2 |
MS.gene90825.t1 | AT5G54610 | 27.717 | 184 | 123 | 2 | 169 | 342 | 40 | 223 | 8.10e-13 | 71.2 |
MS.gene90825.t1 | AT3G18670 | 23.111 | 450 | 296 | 12 | 123 | 530 | 113 | 554 | 1.08e-12 | 71.2 |
MS.gene90825.t1 | AT2G28840 | 27.273 | 209 | 129 | 7 | 132 | 322 | 12 | 215 | 2.01e-12 | 70.1 |
MS.gene90825.t1 | AT4G03440 | 23.126 | 467 | 308 | 12 | 104 | 550 | 258 | 693 | 3.93e-12 | 69.7 |
MS.gene90825.t1 | AT4G03440 | 23.126 | 467 | 308 | 12 | 104 | 550 | 251 | 686 | 4.34e-12 | 69.7 |
MS.gene90825.t1 | AT4G03440 | 23.126 | 467 | 308 | 12 | 104 | 550 | 251 | 686 | 4.34e-12 | 69.7 |
MS.gene90825.t1 | AT4G14400 | 23.242 | 512 | 310 | 20 | 75 | 538 | 71 | 547 | 3.99e-11 | 66.2 |
MS.gene90825.t1 | AT4G14400 | 23.242 | 512 | 310 | 20 | 75 | 538 | 71 | 547 | 3.99e-11 | 66.2 |
MS.gene90825.t1 | AT3G18670 | 23.684 | 304 | 183 | 7 | 236 | 530 | 346 | 609 | 4.68e-11 | 66.2 |
MS.gene90825.t1 | AT4G14400 | 23.242 | 512 | 310 | 20 | 75 | 538 | 137 | 613 | 5.65e-11 | 65.9 |
Find 137 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATTGCATATGGCTGTAAA+AGG | 0.222840 | 1.4:+87830101 | MS.gene90825:CDS |
TGATATTGATTCTCAGATAA+TGG | 0.227356 | 1.4:+87828847 | MS.gene90825:CDS |
GTGGAGTTTCCTCAGCTCTT+TGG | 0.250605 | 1.4:-87831171 | None:intergenic |
GTTATGCTTCCTGACAAATT+TGG | 0.259995 | 1.4:+87830173 | MS.gene90825:CDS |
GAACGAGTGGGCTGCAATTC+TGG | 0.267500 | 1.4:+87831529 | MS.gene90825:CDS |
ACCTCCAATTTCAACCTTCC+AGG | 0.283929 | 1.4:+87828466 | MS.gene90825:CDS |
ACTCAAAGAGATTCAGAAAA+AGG | 0.285730 | 1.4:+87828602 | MS.gene90825:CDS |
AAGGACATCCTCTCTCGATA+TGG | 0.290107 | 1.4:+87831020 | MS.gene90825:CDS |
CCAACCTGGAAGGTTGAAAT+TGG | 0.303178 | 1.4:-87828470 | None:intergenic |
TTCATTTGCAGCCATTGTTC+AGG | 0.330505 | 1.4:+87829818 | MS.gene90825:intron |
CTGCTTCTCTTTCTTCCTCA+TGG | 0.331730 | 1.4:-87831633 | None:intergenic |
GCAATTCTGGTTACAGTTGT+TGG | 0.335512 | 1.4:+87831542 | MS.gene90825:CDS |
GATATTGATTCTCAGATAAT+GGG | 0.350929 | 1.4:+87828848 | MS.gene90825:CDS |
AATTCGATCAACCTCGGAAT+TGG | 0.351942 | 1.4:-87831702 | None:intergenic |
TGAAGAGTCATCAGATATAA+AGG | 0.366092 | 1.4:+87831001 | MS.gene90825:CDS |
TTTGTTTACTGCTGCTGAAA+AGG | 0.377535 | 1.4:+87828967 | MS.gene90825:CDS |
AGATGGCGACGGAGATATTT+CGG | 0.380641 | 1.4:-87828657 | None:intergenic |
GTTCAAATTACCCTTGTTAG+AGG | 0.385400 | 1.4:+87831392 | MS.gene90825:CDS |
GTGATAATATCCGGAGTTAT+TGG | 0.388823 | 1.4:+87831569 | MS.gene90825:CDS |
GTGAAACTAAAGCAGAGAAA+AGG | 0.392404 | 1.4:+87831414 | MS.gene90825:CDS |
TTTGCATTTAGCTGCTCGTC+CGG | 0.403120 | 1.4:+87830001 | MS.gene90825:CDS |
GTCAAAGGATGGCAGCTTGT+TGG | 0.404723 | 1.4:+87829950 | MS.gene90825:CDS |
GGGTCATCTTGATGTTGTTA+AGG | 0.408314 | 1.4:+87828988 | MS.gene90825:CDS |
AGAAAGAGAAGCAGCTAGCC+AGG | 0.411228 | 1.4:+87831642 | MS.gene90825:CDS |
AGGACATCCTCTCTCGATAT+GGG | 0.415929 | 1.4:+87831021 | MS.gene90825:CDS |
CACCACTGTCACCGAGTTTG+TGG | 0.435710 | 1.4:-87831213 | None:intergenic |
CTCGTCGCTGCTGTTATAAG+TGG | 0.455896 | 1.4:-87829897 | None:intergenic |
TCCGTCGTCCGCGACGGCGC+CGG | 0.456322 | 1.4:+87828679 | MS.gene90825:CDS |
AGGCTTTCACGATTTCTGTA+TGG | 0.466846 | 1.4:-87830025 | None:intergenic |
TTGCATTTAGCTGCTCGTCC+GGG | 0.469773 | 1.4:+87830002 | MS.gene90825:CDS |
GCTGCTATATTCACCGTACC+TGG | 0.472210 | 1.4:+87831263 | MS.gene90825:CDS |
TCCTCAGTTCGTCCCTTGGT+TGG | 0.473921 | 1.4:-87831067 | None:intergenic |
CATTTACGTTTGTGTCTGGC+AGG | 0.475438 | 1.4:-87830923 | None:intergenic |
TTGTTTACTGCTGCTGAAAA+GGG | 0.479987 | 1.4:+87828968 | MS.gene90825:CDS |
GCTCAGCAAAGACCCTCAAT+TGG | 0.481998 | 1.4:+87830049 | MS.gene90825:CDS |
CTTTAGTTTCACCTCTAACA+AGG | 0.482809 | 1.4:-87831403 | None:intergenic |
CCAAGCTTAAGCAAAACTAT+TGG | 0.486154 | 1.4:+87829858 | MS.gene90825:CDS |
TGAGTTGGATCCACTTCTCC+TGG | 0.491866 | 1.4:-87831660 | None:intergenic |
GGGGATAACGATGATGGATC+AGG | 0.492044 | 1.4:+87831287 | MS.gene90825:CDS |
CAGTCCTCCGAGCCAATTGA+GGG | 0.492228 | 1.4:-87830061 | None:intergenic |
TCCTTTCAAACTCAGGAAAA+CGG | 0.494021 | 1.4:+87828708 | MS.gene90825:CDS |
TGAAACTAAAGCAGAGAAAA+GGG | 0.501105 | 1.4:+87831415 | MS.gene90825:CDS |
AGGGCAAACTGCATTGCATA+TGG | 0.501695 | 1.4:+87830091 | MS.gene90825:CDS |
TCAGCTCTTTGGATATATTG+TGG | 0.502735 | 1.4:-87831160 | None:intergenic |
ATCGTTATCCCCACCAGGTA+CGG | 0.503271 | 1.4:-87831276 | None:intergenic |
TTGAGGGTCTTTGCTGAGCA+AGG | 0.503619 | 1.4:-87830045 | None:intergenic |
AATGCATTTACGTTTGTGTC+TGG | 0.503703 | 1.4:-87830927 | None:intergenic |
TTGGAAATTGCAAGATCCAA+TGG | 0.508338 | 1.4:+87829969 | MS.gene90825:CDS |
AAGTACGTGAAGCAAGTAAC+GGG | 0.508570 | 1.4:+87828752 | MS.gene90825:CDS |
GCTCGGAGGACTGACAAGAA+AGG | 0.509842 | 1.4:+87830071 | MS.gene90825:CDS |
GACGGAGATATTTCGGAAAG+TGG | 0.514348 | 1.4:-87828650 | None:intergenic |
CTCGGAGGACTGACAAGAAA+GGG | 0.519611 | 1.4:+87830072 | MS.gene90825:CDS |
TTCACGATTTCTGTATGGCC+CGG | 0.525638 | 1.4:-87830020 | None:intergenic |
GTTGGAGGAGTGATAATATC+CGG | 0.527167 | 1.4:+87831560 | MS.gene90825:CDS |
GCCGGCGCCGTCGCGGACGA+CGG | 0.529146 | 1.4:-87828680 | None:intergenic |
CATTGCATATGGCTGTAAAA+GGG | 0.531587 | 1.4:+87830102 | MS.gene90825:CDS |
GAAAGATGTTCACACACAGC+TGG | 0.535788 | 1.4:+87831109 | MS.gene90825:CDS |
CCTGGTGGGGATAACGATGA+TGG | 0.535860 | 1.4:+87831281 | MS.gene90825:CDS |
GCCATCTCCGTCGTCCGCGA+CGG | 0.536247 | 1.4:+87828673 | MS.gene90825:CDS |
GCTGTGTTGCCAAATTTGTC+AGG | 0.537540 | 1.4:-87830182 | None:intergenic |
GGAAAACGGATCGATCAAGC+AGG | 0.537963 | 1.4:+87828722 | MS.gene90825:CDS |
CTATATTCACCGTACCTGGT+GGG | 0.538227 | 1.4:+87831267 | MS.gene90825:CDS |
CAGCATTGCATGTGGCAACC+AGG | 0.541967 | 1.4:+87830201 | MS.gene90825:CDS |
AAGCAGCTAGCCAGGAGAAG+TGG | 0.542236 | 1.4:+87831650 | MS.gene90825:CDS |
TCAGTCCTCCGAGCCAATTG+AGG | 0.545108 | 1.4:-87830062 | None:intergenic |
TCGGAAAGTGGGTTCTGTGT+TGG | 0.547229 | 1.4:-87828638 | None:intergenic |
GACTAGAGCCGGCGCCGTCG+CGG | 0.548417 | 1.4:-87828687 | None:intergenic |
TTGCATATTGCTGCTAGTCA+AGG | 0.549825 | 1.4:+87829073 | MS.gene90825:CDS |
CAGATAATGGGTACTTTGAG+TGG | 0.549949 | 1.4:+87828860 | MS.gene90825:CDS |
CTCTGAATGATGCCATGAGT+TGG | 0.551504 | 1.4:-87831675 | None:intergenic |
AAGAGCTGAGGAAACTCCAC+AGG | 0.552962 | 1.4:+87831174 | MS.gene90825:CDS |
ATTCTGGTTACAGTTGTTGG+AGG | 0.554005 | 1.4:+87831545 | MS.gene90825:CDS |
GATTAACAAGCTCATGTGGT+TGG | 0.554304 | 1.4:+87831448 | MS.gene90825:CDS |
AAGGGACGAACTGAGGAAAA+CGG | 0.554349 | 1.4:+87831073 | MS.gene90825:CDS |
ACCTGGAAGGTTGAAATTGG+AGG | 0.558297 | 1.4:-87828467 | None:intergenic |
GCCGTCGCGGACGACGGAGA+TGG | 0.559929 | 1.4:-87828674 | None:intergenic |
CCATCATCGTTATCCCCACC+AGG | 0.564948 | 1.4:-87831281 | None:intergenic |
TTTAGTTTCACCTCTAACAA+GGG | 0.565107 | 1.4:-87831402 | None:intergenic |
GAGTTTGAAAGGACTAGAGC+CGG | 0.567456 | 1.4:-87828698 | None:intergenic |
GCAAAGACCCTCAATTGGCT+CGG | 0.569896 | 1.4:+87830054 | MS.gene90825:CDS |
GCTCTAGTCCTTTCAAACTC+AGG | 0.572097 | 1.4:+87828701 | MS.gene90825:CDS |
CATTGTTAATTCCTTCCCTG+TGG | 0.572226 | 1.4:-87831190 | None:intergenic |
AGCAGAGAAAAGGGTAGTTG+AGG | 0.573019 | 1.4:+87831424 | MS.gene90825:CDS |
TCGTCGGTCGGAGGAACGAG+TGG | 0.574175 | 1.4:+87831516 | MS.gene90825:CDS |
CGCTGCTGTTATAAGTGGAG+TGG | 0.575162 | 1.4:-87829892 | None:intergenic |
GCTGCTAGTCAAGGACATCA+TGG | 0.575482 | 1.4:+87829082 | MS.gene90825:CDS |
ATAAGTGGAGTGGCGTTGGA+TGG | 0.578501 | 1.4:-87829882 | None:intergenic |
GCAGCTCAAAGAGGTGATGT+TGG | 0.583391 | 1.4:+87828803 | MS.gene90825:CDS |
GTGAATGAAGAGAATGAACT+TGG | 0.587406 | 1.4:+87828935 | MS.gene90825:CDS |
TCTGAGAATCAATATCAAGA+AGG | 0.587872 | 1.4:-87828841 | None:intergenic |
ACGGAGATATTTCGGAAAGT+GGG | 0.587917 | 1.4:-87828649 | None:intergenic |
TGTTATAAGTGGAGTGGCGT+TGG | 0.592828 | 1.4:-87829886 | None:intergenic |
TTCAGAGTTCTCCAATTCCG+AGG | 0.592884 | 1.4:+87831691 | MS.gene90825:CDS |
GCTATATTCACCGTACCTGG+TGG | 0.598478 | 1.4:+87831266 | MS.gene90825:CDS |
ATCTAGTAAAACCTGAACAA+TGG | 0.600510 | 1.4:-87829829 | None:intergenic |
GCCTCTTCGTACATAGTCGT+CGG | 0.600824 | 1.4:+87831500 | MS.gene90825:CDS |
CGCATAAATTCGATCAACCT+CGG | 0.601587 | 1.4:-87831708 | None:intergenic |
CGTACATAGTCGTCGGTCGG+AGG | 0.602499 | 1.4:+87831507 | MS.gene90825:CDS |
GTTGGCTTCTGTCTGTACCT+CGG | 0.602568 | 1.4:+87831466 | MS.gene90825:CDS |
CTGAGGAAACTCCACAGGGA+AGG | 0.603249 | 1.4:+87831179 | MS.gene90825:CDS |
TATATTCACCGTACCTGGTG+GGG | 0.603908 | 1.4:+87831268 | MS.gene90825:CDS |
GAAGTACGTGAAGCAAGTAA+CGG | 0.604371 | 1.4:+87828751 | MS.gene90825:CDS |
GGAGAAGTGGATCCAACTCA+TGG | 0.605497 | 1.4:+87831663 | MS.gene90825:CDS |
AGAAGAAGAACCAACCTGGA+AGG | 0.609441 | 1.4:-87828480 | None:intergenic |
GACGAGAGGGCACGTCGAAG+TGG | 0.609993 | 1.4:+87829914 | MS.gene90825:CDS |
GGTGAATGAACTTCTGTCAA+AGG | 0.612992 | 1.4:+87829935 | MS.gene90825:CDS |
TTATAACAGCAGCGACGAGA+GGG | 0.613377 | 1.4:+87829901 | MS.gene90825:CDS |
AATGAACTTCTGTCAAAGGA+TGG | 0.613527 | 1.4:+87829939 | MS.gene90825:CDS |
TCTGATGACTCTTCAGAGAG+AGG | 0.615975 | 1.4:-87830993 | None:intergenic |
AATTAACAATGCCACAAACT+CGG | 0.616650 | 1.4:+87831202 | MS.gene90825:CDS |
CGTCGGTCGGAGGAACGAGT+GGG | 0.619749 | 1.4:+87831517 | MS.gene90825:CDS |
ACCAACCAAGGGACGAACTG+AGG | 0.620407 | 1.4:+87831066 | MS.gene90825:CDS |
CTAACGAGCTCAACCAACCA+AGG | 0.621035 | 1.4:+87831054 | MS.gene90825:CDS |
CTTCATCTAGCAGCTCAAAG+AGG | 0.623399 | 1.4:+87828794 | MS.gene90825:CDS |
CTTCGTACATAGTCGTCGGT+CGG | 0.624785 | 1.4:+87831504 | MS.gene90825:CDS |
CTTATAACAGCAGCGACGAG+AGG | 0.631608 | 1.4:+87829900 | MS.gene90825:CDS |
TGCCACAAACTCGGTGACAG+TGG | 0.632510 | 1.4:+87831211 | MS.gene90825:CDS |
AGTCATAGTGCCAATAACTC+CGG | 0.636725 | 1.4:-87831579 | None:intergenic |
TGGCAACACAGCATTGCATG+TGG | 0.637663 | 1.4:+87830193 | MS.gene90825:CDS |
GGACATCCTCTCTCGATATG+GGG | 0.638757 | 1.4:+87831022 | MS.gene90825:CDS |
TGACTAGCAGCAATATGCAA+AGG | 0.639675 | 1.4:-87829070 | None:intergenic |
ACAATATATCCAAAGAGCTG+AGG | 0.644642 | 1.4:+87831162 | MS.gene90825:CDS |
AAGACCCTCAATTGGCTCGG+AGG | 0.651684 | 1.4:+87830057 | MS.gene90825:CDS |
GCGGACGACGGAGATGGCGA+CGG | 0.652416 | 1.4:-87828668 | None:intergenic |
GGCTTCTGTCTGTACCTCGG+TGG | 0.655940 | 1.4:+87831469 | MS.gene90825:CDS |
GAAAACGGATCGATCAAGCA+GGG | 0.663000 | 1.4:+87828723 | MS.gene90825:CDS |
TAACGATGATGGATCAGGAG+TGG | 0.663853 | 1.4:+87831292 | MS.gene90825:CDS |
TAAGTGCCCCATATCGAGAG+AGG | 0.665007 | 1.4:-87831028 | None:intergenic |
AGGTGATTAACAAGCTCATG+TGG | 0.671742 | 1.4:+87831444 | MS.gene90825:CDS |
ACCGACGACTATGTACGAAG+AGG | 0.681066 | 1.4:-87831501 | None:intergenic |
CACAAACTCGGTGACAGTGG+TGG | 0.691648 | 1.4:+87831214 | MS.gene90825:CDS |
TAACGAGCTCAACCAACCAA+GGG | 0.693605 | 1.4:+87831055 | MS.gene90825:CDS |
CTATGACTTACTATGTAGTG+AGG | 0.708286 | 1.4:+87831594 | MS.gene90825:CDS |
CTAAGAGAACAAGATCCATG+AGG | 0.720939 | 1.4:+87831618 | MS.gene90825:CDS |
AGAGCTGAGGAAACTCCACA+GGG | 0.730372 | 1.4:+87831175 | MS.gene90825:CDS |
AAAAGGGCAGAGCTGTGACG+TGG | 0.742175 | 1.4:+87830118 | MS.gene90825:CDS |
AGAGGCAATAAATGCCACCG+AGG | 0.784742 | 1.4:-87831483 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTAAAAGAAAACAAG+AGG | - | chr1.4:87830786-87830805 | None:intergenic | 15.0% |
!!! | AATATTAGATTTTTCATTCA+AGG | - | chr1.4:87830859-87830878 | None:intergenic | 15.0% |
!!! | ATTTTGCTTTTTGTAAAAAT+GGG | + | chr1.4:87829195-87829214 | MS.gene90825:intron | 15.0% |
!!! | TATTTTGCTTTTTGTAAAAA+TGG | + | chr1.4:87829194-87829213 | MS.gene90825:intron | 15.0% |
!!! | TTTTTTTAAGAAGCTATTAA+TGG | + | chr1.4:87829587-87829606 | MS.gene90825:intron | 15.0% |
!! | AATTTAATCAGATATACTTC+TGG | - | chr1.4:87829475-87829494 | None:intergenic | 20.0% |
!! | GCAACTACTTAAATAAATAA+AGG | - | chr1.4:87830588-87830607 | None:intergenic | 20.0% |
!! | TAATACTACTACTACAAATA+TGG | - | chr1.4:87830360-87830379 | None:intergenic | 20.0% |
!! | TCATAATTGAGTTTCTTTAT+TGG | - | chr1.4:87829552-87829571 | None:intergenic | 20.0% |
!!! | TATTTTGAATGAATTGACTT+TGG | + | chr1.4:87829229-87829248 | MS.gene90825:intron | 20.0% |
!!! | TGTTATTTTGCTTTGAAAAT+TGG | + | chr1.4:87830662-87830681 | MS.gene90825:intron | 20.0% |
!!! | TTTTTTTTGGAACATATTCT+TGG | + | chr1.4:87829427-87829446 | MS.gene90825:intron | 20.0% |
! | AAACATGTTATATGAGACAA+GGG | + | chr1.4:87830728-87830747 | MS.gene90825:intron | 25.0% |
! | AACATCAAAACAAAGGAAAA+AGG | - | chr1.4:87829155-87829174 | None:intergenic | 25.0% |
! | AAGGTAAAACGATTTATGTT+TGG | + | chr1.4:87829266-87829285 | MS.gene90825:intron | 25.0% |
! | AGGTAAAACGATTTATGTTT+GGG | + | chr1.4:87829267-87829286 | MS.gene90825:intron | 25.0% |
! | ATTAACTTACTCGAACAAAT+CGG | + | chr1.4:87830310-87830329 | MS.gene90825:intron | 25.0% |
! | CTCAATTATGATGCTATTAA+TGG | + | chr1.4:87829561-87829580 | MS.gene90825:intron | 25.0% |
! | TTACAGTGAAGTAAAAAGAT+GGG | - | chr1.4:87828515-87828534 | None:intergenic | 25.0% |
! | TTGAGTATTTATCTTGCTTA+AGG | + | chr1.4:87829523-87829542 | MS.gene90825:intron | 25.0% |
! | TTTAAGTAGTTGCAAGTATA+AGG | + | chr1.4:87830595-87830614 | MS.gene90825:intron | 25.0% |
! | TTTACAGTGAAGTAAAAAGA+TGG | - | chr1.4:87828516-87828535 | None:intergenic | 25.0% |
!! | CAATTTTGTCTAGAAGTTTT+GGG | + | chr1.4:87830760-87830779 | MS.gene90825:intron | 25.0% |
!! | TATATTGTGGACATTTTTGT+TGG | - | chr1.4:87831150-87831169 | None:intergenic | 25.0% |
!! | TCAATTTTGTCTAGAAGTTT+TGG | + | chr1.4:87830759-87830778 | MS.gene90825:intron | 25.0% |
!!! | ATTGTTGTTTCTCAATTTCT+TGG | + | chr1.4:87830876-87830895 | MS.gene90825:intron | 25.0% |
!!! | GATATTGATTCTCAGATAAT+GGG | + | chr1.4:87828848-87828867 | MS.gene90825:CDS | 25.0% |
!!! | TGATATTGATTCTCAGATAA+TGG | + | chr1.4:87828847-87828866 | MS.gene90825:CDS | 25.0% |
!!! | TTTTCCTTTGTTTTGATGTT+GGG | + | chr1.4:87829155-87829174 | MS.gene90825:intron | 25.0% |
!!! | TTTTTCCTTTGTTTTGATGT+TGG | + | chr1.4:87829154-87829173 | MS.gene90825:intron | 25.0% |
AAATCCCAACATCAAAACAA+AGG | - | chr1.4:87829162-87829181 | None:intergenic | 30.0% | |
AAGTCTCCAATATTGAAAAC+AGG | + | chr1.4:87830397-87830416 | MS.gene90825:intron | 30.0% | |
AATAAGACAACGTTGATGTT+TGG | - | chr1.4:87829692-87829711 | None:intergenic | 30.0% | |
AATTAACAATGCCACAAACT+CGG | + | chr1.4:87831202-87831221 | MS.gene90825:CDS | 30.0% | |
ACATAGCATTAACTCTACTA+CGG | - | chr1.4:87829658-87829677 | None:intergenic | 30.0% | |
ACTCAAAGAGATTCAGAAAA+AGG | + | chr1.4:87828602-87828621 | MS.gene90825:CDS | 30.0% | |
AGATTACTACAAAGAACAGA+AGG | - | chr1.4:87829788-87829807 | None:intergenic | 30.0% | |
ATCTAGTAAAACCTGAACAA+TGG | - | chr1.4:87829832-87829851 | None:intergenic | 30.0% | |
GAAACATGTTATATGAGACA+AGG | + | chr1.4:87830727-87830746 | MS.gene90825:intron | 30.0% | |
GTGCACACTACTTAAAAAAA+TGG | - | chr1.4:87830698-87830717 | None:intergenic | 30.0% | |
TACAGTGAAGTAAAAAGATG+GGG | - | chr1.4:87828514-87828533 | None:intergenic | 30.0% | |
TCATCACTATATGTACTGTA+TGG | - | chr1.4:87830280-87830299 | None:intergenic | 30.0% | |
TCTGAGAATCAATATCAAGA+AGG | - | chr1.4:87828844-87828863 | None:intergenic | 30.0% | |
TGAAACTAAAGCAGAGAAAA+GGG | + | chr1.4:87831415-87831434 | MS.gene90825:CDS | 30.0% | |
TGAAGAGTCATCAGATATAA+AGG | + | chr1.4:87831001-87831020 | MS.gene90825:CDS | 30.0% | |
TTAACTTACTCGAACAAATC+GGG | + | chr1.4:87830311-87830330 | MS.gene90825:intron | 30.0% | |
! | AACATCAACGTTGTCTTATT+TGG | + | chr1.4:87829692-87829711 | MS.gene90825:intron | 30.0% |
! | AAGATTTTCAGCAATGTCAA+GGG | - | chr1.4:87830973-87830992 | None:intergenic | 30.0% |
! | GTTTCTAAAAAGAATCGATC+TGG | + | chr1.4:87829040-87829059 | MS.gene90825:CDS | 30.0% |
! | TAGCTACCTGTTTTCAATAT+TGG | - | chr1.4:87830406-87830425 | None:intergenic | 30.0% |
! | TTTAGTTTCACCTCTAACAA+GGG | - | chr1.4:87831405-87831424 | None:intergenic | 30.0% |
!! | CAATAGTTTTGCTTAAGCTT+GGG | - | chr1.4:87829860-87829879 | None:intergenic | 30.0% |
!! | TATTGCGCTTTTTACATCTT+TGG | + | chr1.4:87831358-87831377 | MS.gene90825:CDS | 30.0% |
!! | TTTGGCTAAAATTGAGTTGA+AGG | + | chr1.4:87829247-87829266 | MS.gene90825:intron | 30.0% |
!!! | ATGCAAAGCATTTTTTCCAT+TGG | - | chr1.4:87829988-87830007 | None:intergenic | 30.0% |
!!! | TTGTTTTGATGTTGGGATTT+TGG | + | chr1.4:87829162-87829181 | MS.gene90825:intron | 30.0% |
AAGTAGTTGCAAGTATAAGG+TGG | + | chr1.4:87830598-87830617 | MS.gene90825:intron | 35.0% | |
AATGAACTTCTGTCAAAGGA+TGG | + | chr1.4:87829939-87829958 | MS.gene90825:CDS | 35.0% | |
AATGCATTTACGTTTGTGTC+TGG | - | chr1.4:87830930-87830949 | None:intergenic | 35.0% | |
ACAATATATCCAAAGAGCTG+AGG | + | chr1.4:87831162-87831181 | MS.gene90825:CDS | 35.0% | |
ACAGTGAAGTAAAAAGATGG+GGG | - | chr1.4:87828513-87828532 | None:intergenic | 35.0% | |
ACATGCTCAAAAGTAACTAG+GGG | - | chr1.4:87830829-87830848 | None:intergenic | 35.0% | |
CATTGCATATGGCTGTAAAA+GGG | + | chr1.4:87830102-87830121 | MS.gene90825:CDS | 35.0% | |
CCAAGCTTAAGCAAAACTAT+TGG | + | chr1.4:87829858-87829877 | MS.gene90825:CDS | 35.0% | |
CTATGACTTACTATGTAGTG+AGG | + | chr1.4:87831594-87831613 | MS.gene90825:CDS | 35.0% | |
CTTGAGTAGCTTCAATTTGT+GGG | + | chr1.4:87829731-87829750 | MS.gene90825:intron | 35.0% | |
GACATGCTCAAAAGTAACTA+GGG | - | chr1.4:87830830-87830849 | None:intergenic | 35.0% | |
GCTTCAAGTAGAATCAGTTA+TGG | + | chr1.4:87829365-87829384 | MS.gene90825:intron | 35.0% | |
GTGAAACTAAAGCAGAGAAA+AGG | + | chr1.4:87831414-87831433 | MS.gene90825:CDS | 35.0% | |
GTGAATGAAGAGAATGAACT+TGG | + | chr1.4:87828935-87828954 | MS.gene90825:CDS | 35.0% | |
GTGATAATATCCGGAGTTAT+TGG | + | chr1.4:87831569-87831588 | MS.gene90825:CDS | 35.0% | |
GTTATGCTTCCTGACAAATT+TGG | + | chr1.4:87830173-87830192 | MS.gene90825:CDS | 35.0% | |
GTTCAAATTACCCTTGTTAG+AGG | + | chr1.4:87831392-87831411 | MS.gene90825:CDS | 35.0% | |
TCAGCTCTTTGGATATATTG+TGG | - | chr1.4:87831163-87831182 | None:intergenic | 35.0% | |
TCAGTTATGGAGACAAAATC+AGG | + | chr1.4:87829378-87829397 | MS.gene90825:intron | 35.0% | |
TCCTTTCAAACTCAGGAAAA+CGG | + | chr1.4:87828708-87828727 | MS.gene90825:CDS | 35.0% | |
TGACATGCTCAAAAGTAACT+AGG | - | chr1.4:87830831-87830850 | None:intergenic | 35.0% | |
TGCTACAAAAAATGCAAACG+AGG | + | chr1.4:87830430-87830449 | MS.gene90825:intron | 35.0% | |
TTGGAAATTGCAAGATCCAA+TGG | + | chr1.4:87829969-87829988 | MS.gene90825:CDS | 35.0% | |
TTGTTTACTGCTGCTGAAAA+GGG | + | chr1.4:87828968-87828987 | MS.gene90825:CDS | 35.0% | |
TTTGTTTACTGCTGCTGAAA+AGG | + | chr1.4:87828967-87828986 | MS.gene90825:CDS | 35.0% | |
! | CTTTAGTTTCACCTCTAACA+AGG | - | chr1.4:87831406-87831425 | None:intergenic | 35.0% |
! | GAAGATTTTCAGCAATGTCA+AGG | - | chr1.4:87830974-87830993 | None:intergenic | 35.0% |
! | TACGCTTTTACGTTTATTGC+AGG | + | chr1.4:87828569-87828588 | MS.gene90825:intron | 35.0% |
! | TAGCTTCAATTTGTGGGTTA+TGG | + | chr1.4:87829737-87829756 | MS.gene90825:intron | 35.0% |
! | TTTTACATCTTTGGCTGTTG+TGG | + | chr1.4:87831367-87831386 | MS.gene90825:CDS | 35.0% |
!! | CCAATAGTTTTGCTTAAGCT+TGG | - | chr1.4:87829861-87829880 | None:intergenic | 35.0% |
!!! | GACATTTTTGTTGGTTCTCT+TGG | - | chr1.4:87831141-87831160 | None:intergenic | 35.0% |
AAGTACGTGAAGCAAGTAAC+GGG | + | chr1.4:87828752-87828771 | MS.gene90825:CDS | 40.0% | |
AATTCGATCAACCTCGGAAT+TGG | - | chr1.4:87831705-87831724 | None:intergenic | 40.0% | |
ACGGAGATATTTCGGAAAGT+GGG | - | chr1.4:87828652-87828671 | None:intergenic | 40.0% | |
AGATAGAAGAAGAACCAACC+TGG | - | chr1.4:87828487-87828506 | None:intergenic | 40.0% | |
AGGCTTTCACGATTTCTGTA+TGG | - | chr1.4:87830028-87830047 | None:intergenic | 40.0% | |
AGGTGATTAACAAGCTCATG+TGG | + | chr1.4:87831444-87831463 | MS.gene90825:CDS | 40.0% | |
AGTCATAGTGCCAATAACTC+CGG | - | chr1.4:87831582-87831601 | None:intergenic | 40.0% | |
CATTGTTAATTCCTTCCCTG+TGG | - | chr1.4:87831193-87831212 | None:intergenic | 40.0% | |
CCACAAATTGAAGCTACTCA+AGG | - | chr1.4:87829733-87829752 | None:intergenic | 40.0% | |
CCTTGAGTAGCTTCAATTTG+TGG | + | chr1.4:87829730-87829749 | MS.gene90825:intron | 40.0% | |
CGCATAAATTCGATCAACCT+CGG | - | chr1.4:87831711-87831730 | None:intergenic | 40.0% | |
CTAAGAGAACAAGATCCATG+AGG | + | chr1.4:87831618-87831637 | MS.gene90825:CDS | 40.0% | |
GAAGTACGTGAAGCAAGTAA+CGG | + | chr1.4:87828751-87828770 | MS.gene90825:CDS | 40.0% | |
GATTAACAAGCTCATGTGGT+TGG | + | chr1.4:87831448-87831467 | MS.gene90825:CDS | 40.0% | |
GCATTGCATATGGCTGTAAA+AGG | + | chr1.4:87830101-87830120 | MS.gene90825:CDS | 40.0% | |
GCTACTCAAGGTCTAACAAT+TGG | - | chr1.4:87829721-87829740 | None:intergenic | 40.0% | |
GGGTCATCTTGATGTTGTTA+AGG | + | chr1.4:87828988-87829007 | MS.gene90825:CDS | 40.0% | |
GGTGAATGAACTTCTGTCAA+AGG | + | chr1.4:87829935-87829954 | MS.gene90825:CDS | 40.0% | |
GTTGGAGGAGTGATAATATC+CGG | + | chr1.4:87831560-87831579 | MS.gene90825:CDS | 40.0% | |
TGACTAGCAGCAATATGCAA+AGG | - | chr1.4:87829073-87829092 | None:intergenic | 40.0% | |
TTCATTTGCAGCCATTGTTC+AGG | + | chr1.4:87829818-87829837 | MS.gene90825:intron | 40.0% | |
TTGCATATTGCTGCTAGTCA+AGG | + | chr1.4:87829073-87829092 | MS.gene90825:CDS | 40.0% | |
! | ATTCTGGTTACAGTTGTTGG+AGG | + | chr1.4:87831545-87831564 | MS.gene90825:CDS | 40.0% |
! | GCAATTCTGGTTACAGTTGT+TGG | + | chr1.4:87831542-87831561 | MS.gene90825:CDS | 40.0% |
! | GCTTTTACGTTTATTGCAGG+TGG | + | chr1.4:87828572-87828591 | MS.gene90825:intron | 40.0% |
! | TCCGTTTTCCTGAGTTTGAA+AGG | - | chr1.4:87828712-87828731 | None:intergenic | 40.0% |
!! | CAGATAATGGGTACTTTGAG+TGG | + | chr1.4:87828860-87828879 | MS.gene90825:CDS | 40.0% |
AACCAGGAAAAAGCGAGTAG+AGG | + | chr1.4:87830217-87830236 | MS.gene90825:CDS | 45.0% | |
AAGGACATCCTCTCTCGATA+TGG | + | chr1.4:87831020-87831039 | MS.gene90825:CDS | 45.0% | |
AAGGGACGAACTGAGGAAAA+CGG | + | chr1.4:87831073-87831092 | MS.gene90825:CDS | 45.0% | |
ACCTCCAATTTCAACCTTCC+AGG | + | chr1.4:87828466-87828485 | MS.gene90825:CDS | 45.0% | |
ACCTGGAAGGTTGAAATTGG+AGG | - | chr1.4:87828470-87828489 | None:intergenic | 45.0% | |
AGAAGAAGAACCAACCTGGA+AGG | - | chr1.4:87828483-87828502 | None:intergenic | 45.0% | |
AGATGGCGACGGAGATATTT+CGG | - | chr1.4:87828660-87828679 | None:intergenic | 45.0% | |
AGCAGAGAAAAGGGTAGTTG+AGG | + | chr1.4:87831424-87831443 | MS.gene90825:CDS | 45.0% | |
AGGACATCCTCTCTCGATAT+GGG | + | chr1.4:87831021-87831040 | MS.gene90825:CDS | 45.0% | |
AGGGCAAACTGCATTGCATA+TGG | + | chr1.4:87830091-87830110 | MS.gene90825:CDS | 45.0% | |
CATTTACGTTTGTGTCTGGC+AGG | - | chr1.4:87830926-87830945 | None:intergenic | 45.0% | |
CCAACCTGGAAGGTTGAAAT+TGG | - | chr1.4:87828473-87828492 | None:intergenic | 45.0% | |
CCAATTTCAACCTTCCAGGT+TGG | + | chr1.4:87828470-87828489 | MS.gene90825:intron | 45.0% | |
CTATATTCACCGTACCTGGT+GGG | + | chr1.4:87831267-87831286 | MS.gene90825:CDS | 45.0% | |
CTCTGAATGATGCCATGAGT+TGG | - | chr1.4:87831678-87831697 | None:intergenic | 45.0% | |
CTGCTTCTCTTTCTTCCTCA+TGG | - | chr1.4:87831636-87831655 | None:intergenic | 45.0% | |
CTTCATCTAGCAGCTCAAAG+AGG | + | chr1.4:87828794-87828813 | MS.gene90825:CDS | 45.0% | |
GAAAACGGATCGATCAAGCA+GGG | + | chr1.4:87828723-87828742 | MS.gene90825:CDS | 45.0% | |
GAAAGATGTTCACACACAGC+TGG | + | chr1.4:87831109-87831128 | MS.gene90825:CDS | 45.0% | |
GACGGAGATATTTCGGAAAG+TGG | - | chr1.4:87828653-87828672 | None:intergenic | 45.0% | |
GAGTTTGAAAGGACTAGAGC+CGG | - | chr1.4:87828701-87828720 | None:intergenic | 45.0% | |
GCTCTAGTCCTTTCAAACTC+AGG | + | chr1.4:87828701-87828720 | MS.gene90825:CDS | 45.0% | |
GCTGTGTTGCCAAATTTGTC+AGG | - | chr1.4:87830185-87830204 | None:intergenic | 45.0% | |
TAACGAGCTCAACCAACCAA+GGG | + | chr1.4:87831055-87831074 | MS.gene90825:CDS | 45.0% | |
TATATTCACCGTACCTGGTG+GGG | + | chr1.4:87831268-87831287 | MS.gene90825:CDS | 45.0% | |
TCTGATGACTCTTCAGAGAG+AGG | - | chr1.4:87830996-87831015 | None:intergenic | 45.0% | |
TGTTATAAGTGGAGTGGCGT+TGG | - | chr1.4:87829889-87829908 | None:intergenic | 45.0% | |
TTATAACAGCAGCGACGAGA+GGG | + | chr1.4:87829901-87829920 | MS.gene90825:CDS | 45.0% | |
TTCACGATTTCTGTATGGCC+CGG | - | chr1.4:87830023-87830042 | None:intergenic | 45.0% | |
TTCAGAGTTCTCCAATTCCG+AGG | + | chr1.4:87831691-87831710 | MS.gene90825:CDS | 45.0% | |
TTTGCATTTAGCTGCTCGTC+CGG | + | chr1.4:87830001-87830020 | MS.gene90825:CDS | 45.0% | |
!! | CAATGTCAAGGGCTGTTTTG+TGG | - | chr1.4:87830962-87830981 | None:intergenic | 45.0% |
!! | TAACGATGATGGATCAGGAG+TGG | + | chr1.4:87831292-87831311 | MS.gene90825:CDS | 45.0% |
!!! | TACCTCTACTCGCTTTTTCC+TGG | - | chr1.4:87830222-87830241 | None:intergenic | 45.0% |
!!! | TTTTGTATTTTTTTTTTTTT+TGG | + | chr1.4:87829414-87829433 | MS.gene90825:intron | 5.0% |
AAGAGCTGAGGAAACTCCAC+AGG | + | chr1.4:87831174-87831193 | MS.gene90825:CDS | 50.0% | |
ACCGACGACTATGTACGAAG+AGG | - | chr1.4:87831504-87831523 | None:intergenic | 50.0% | |
AGAAAGAGAAGCAGCTAGCC+AGG | + | chr1.4:87831642-87831661 | MS.gene90825:CDS | 50.0% | |
AGAGCTGAGGAAACTCCACA+GGG | + | chr1.4:87831175-87831194 | MS.gene90825:CDS | 50.0% | |
AGAGGCAATAAATGCCACCG+AGG | - | chr1.4:87831486-87831505 | None:intergenic | 50.0% | |
ATCGTTATCCCCACCAGGTA+CGG | - | chr1.4:87831279-87831298 | None:intergenic | 50.0% | |
CGCTGCTGTTATAAGTGGAG+TGG | - | chr1.4:87829895-87829914 | None:intergenic | 50.0% | |
CTAACGAGCTCAACCAACCA+AGG | + | chr1.4:87831054-87831073 | MS.gene90825:CDS | 50.0% | |
CTCGGAGGACTGACAAGAAA+GGG | + | chr1.4:87830072-87830091 | MS.gene90825:CDS | 50.0% | |
CTCGTCGCTGCTGTTATAAG+TGG | - | chr1.4:87829900-87829919 | None:intergenic | 50.0% | |
CTTATAACAGCAGCGACGAG+AGG | + | chr1.4:87829900-87829919 | MS.gene90825:CDS | 50.0% | |
CTTCGTACATAGTCGTCGGT+CGG | + | chr1.4:87831504-87831523 | MS.gene90825:CDS | 50.0% | |
GCAAAGACCCTCAATTGGCT+CGG | + | chr1.4:87830054-87830073 | MS.gene90825:CDS | 50.0% | |
GCAGCTCAAAGAGGTGATGT+TGG | + | chr1.4:87828803-87828822 | MS.gene90825:CDS | 50.0% | |
GCCTCTTCGTACATAGTCGT+CGG | + | chr1.4:87831500-87831519 | MS.gene90825:CDS | 50.0% | |
GCTATATTCACCGTACCTGG+TGG | + | chr1.4:87831266-87831285 | MS.gene90825:CDS | 50.0% | |
GCTCAGCAAAGACCCTCAAT+TGG | + | chr1.4:87830049-87830068 | MS.gene90825:CDS | 50.0% | |
GCTGCTAGTCAAGGACATCA+TGG | + | chr1.4:87829082-87829101 | MS.gene90825:CDS | 50.0% | |
GCTGCTATATTCACCGTACC+TGG | + | chr1.4:87831263-87831282 | MS.gene90825:CDS | 50.0% | |
GGAAAACGGATCGATCAAGC+AGG | + | chr1.4:87828722-87828741 | MS.gene90825:CDS | 50.0% | |
GGACATCCTCTCTCGATATG+GGG | + | chr1.4:87831022-87831041 | MS.gene90825:CDS | 50.0% | |
GGAGAAGTGGATCCAACTCA+TGG | + | chr1.4:87831663-87831682 | MS.gene90825:CDS | 50.0% | |
GTCAAAGGATGGCAGCTTGT+TGG | + | chr1.4:87829950-87829969 | MS.gene90825:CDS | 50.0% | |
GTGGAGTTTCCTCAGCTCTT+TGG | - | chr1.4:87831174-87831193 | None:intergenic | 50.0% | |
TAAGTGCCCCATATCGAGAG+AGG | - | chr1.4:87831031-87831050 | None:intergenic | 50.0% | |
TGGCAACACAGCATTGCATG+TGG | + | chr1.4:87830193-87830212 | MS.gene90825:CDS | 50.0% | |
TTGAGGGTCTTTGCTGAGCA+AGG | - | chr1.4:87830048-87830067 | None:intergenic | 50.0% | |
TTGCATTTAGCTGCTCGTCC+GGG | + | chr1.4:87830002-87830021 | MS.gene90825:CDS | 50.0% | |
! | ATAAGTGGAGTGGCGTTGGA+TGG | - | chr1.4:87829885-87829904 | None:intergenic | 50.0% |
! | GTTGGCTTCTGTCTGTACCT+CGG | + | chr1.4:87831466-87831485 | MS.gene90825:CDS | 50.0% |
! | GTTTTCCTCAGTTCGTCCCT+TGG | - | chr1.4:87831074-87831093 | None:intergenic | 50.0% |
! | TCGGAAAGTGGGTTCTGTGT+TGG | - | chr1.4:87828641-87828660 | None:intergenic | 50.0% |
! | TGAGTTGGATCCACTTCTCC+TGG | - | chr1.4:87831663-87831682 | None:intergenic | 50.0% |
!! | GGGGATAACGATGATGGATC+AGG | + | chr1.4:87831287-87831306 | MS.gene90825:CDS | 50.0% |
AAAAGGGCAGAGCTGTGACG+TGG | + | chr1.4:87830118-87830137 | MS.gene90825:CDS | 55.0% | |
AAGCAGCTAGCCAGGAGAAG+TGG | + | chr1.4:87831650-87831669 | MS.gene90825:CDS | 55.0% | |
ACCAACCAAGGGACGAACTG+AGG | + | chr1.4:87831066-87831085 | MS.gene90825:CDS | 55.0% | |
CACCACTGTCACCGAGTTTG+TGG | - | chr1.4:87831216-87831235 | None:intergenic | 55.0% | |
CAGCATTGCATGTGGCAACC+AGG | + | chr1.4:87830201-87830220 | MS.gene90825:CDS | 55.0% | |
CAGTCCTCCGAGCCAATTGA+GGG | - | chr1.4:87830064-87830083 | None:intergenic | 55.0% | |
CCATCATCGTTATCCCCACC+AGG | - | chr1.4:87831284-87831303 | None:intergenic | 55.0% | |
CCTGGTGGGGATAACGATGA+TGG | + | chr1.4:87831281-87831300 | MS.gene90825:CDS | 55.0% | |
CTGAGGAAACTCCACAGGGA+AGG | + | chr1.4:87831179-87831198 | MS.gene90825:CDS | 55.0% | |
GCTCGGAGGACTGACAAGAA+AGG | + | chr1.4:87830071-87830090 | MS.gene90825:CDS | 55.0% | |
TCAGTCCTCCGAGCCAATTG+AGG | - | chr1.4:87830065-87830084 | None:intergenic | 55.0% | |
TCCTCAGTTCGTCCCTTGGT+TGG | - | chr1.4:87831070-87831089 | None:intergenic | 55.0% | |
! | CACAAACTCGGTGACAGTGG+TGG | + | chr1.4:87831214-87831233 | MS.gene90825:CDS | 55.0% |
! | TGCCACAAACTCGGTGACAG+TGG | + | chr1.4:87831211-87831230 | MS.gene90825:CDS | 55.0% |
!! | AAGACCCTCAATTGGCTCGG+AGG | + | chr1.4:87830057-87830076 | MS.gene90825:CDS | 55.0% |
!! | GAACGAGTGGGCTGCAATTC+TGG | + | chr1.4:87831529-87831548 | MS.gene90825:CDS | 55.0% |
CGTACATAGTCGTCGGTCGG+AGG | + | chr1.4:87831507-87831526 | MS.gene90825:CDS | 60.0% | |
GGCTTCTGTCTGTACCTCGG+TGG | + | chr1.4:87831469-87831488 | MS.gene90825:CDS | 60.0% | |
CGTCGGTCGGAGGAACGAGT+GGG | + | chr1.4:87831517-87831536 | MS.gene90825:CDS | 65.0% | |
TCGTCGGTCGGAGGAACGAG+TGG | + | chr1.4:87831516-87831535 | MS.gene90825:CDS | 65.0% | |
! | GACGAGAGGGCACGTCGAAG+TGG | + | chr1.4:87829914-87829933 | MS.gene90825:CDS | 65.0% |
GCCATCTCCGTCGTCCGCGA+CGG | + | chr1.4:87828673-87828692 | MS.gene90825:CDS | 70.0% | |
GCGGACGACGGAGATGGCGA+CGG | - | chr1.4:87828671-87828690 | None:intergenic | 70.0% | |
GACTAGAGCCGGCGCCGTCG+CGG | - | chr1.4:87828690-87828709 | None:intergenic | 75.0% | |
GCCGTCGCGGACGACGGAGA+TGG | - | chr1.4:87828677-87828696 | None:intergenic | 75.0% | |
! | TCCGTCGTCCGCGACGGCGC+CGG | + | chr1.4:87828679-87828698 | MS.gene90825:CDS | 80.0% |
! | GCCGGCGCCGTCGCGGACGA+CGG | - | chr1.4:87828683-87828702 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 87828463 | 87831736 | 87828463 | ID=MS.gene90825 |
chr1.4 | mRNA | 87828463 | 87831736 | 87828463 | ID=MS.gene90825.t1;Parent=MS.gene90825 |
chr1.4 | exon | 87828463 | 87828487 | 87828463 | ID=MS.gene90825.t1.exon1;Parent=MS.gene90825.t1 |
chr1.4 | CDS | 87828463 | 87828487 | 87828463 | ID=cds.MS.gene90825.t1;Parent=MS.gene90825.t1 |
chr1.4 | exon | 87828591 | 87829103 | 87828591 | ID=MS.gene90825.t1.exon2;Parent=MS.gene90825.t1 |
chr1.4 | CDS | 87828591 | 87829103 | 87828591 | ID=cds.MS.gene90825.t1;Parent=MS.gene90825.t1 |
chr1.4 | exon | 87829829 | 87830238 | 87829829 | ID=MS.gene90825.t1.exon3;Parent=MS.gene90825.t1 |
chr1.4 | CDS | 87829829 | 87830238 | 87829829 | ID=cds.MS.gene90825.t1;Parent=MS.gene90825.t1 |
chr1.4 | exon | 87830903 | 87831736 | 87830903 | ID=MS.gene90825.t1.exon4;Parent=MS.gene90825.t1 |
chr1.4 | CDS | 87830903 | 87831736 | 87830903 | ID=cds.MS.gene90825.t1;Parent=MS.gene90825.t1 |
Gene Sequence |
Protein sequence |