AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90825


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90825.t1 MTR_1g115575 99.157 593 5 0 1 593 1 593 0.0 1201
MS.gene90825.t1 MTR_7g100430 73.042 549 141 4 46 593 40 582 0.0 791
MS.gene90825.t1 MTR_2g096190 46.209 554 253 9 61 593 15 544 3.25e-147 436
MS.gene90825.t1 MTR_4g062100 47.126 522 237 8 58 563 16 514 3.06e-145 431
MS.gene90825.t1 MTR_7g117620 45.421 546 255 7 61 593 31 546 9.83e-137 409
MS.gene90825.t1 MTR_1g032100 45.436 482 246 7 127 593 52 531 7.15e-128 386
MS.gene90825.t1 MTR_7g100390 42.620 542 273 7 66 593 3 520 3.77e-125 379
MS.gene90825.t1 MTR_8g105260 43.659 481 256 4 127 593 59 538 7.96e-125 378
MS.gene90825.t1 MTR_1g069110 27.021 433 263 12 170 559 18 440 1.39e-27 116
MS.gene90825.t1 MTR_2g101310 22.951 610 356 14 4 567 69 610 1.17e-26 115
MS.gene90825.t1 MTR_2g101310 25.403 248 184 1 96 343 1 247 1.37e-20 96.3
MS.gene90825.t1 MTR_3g105650 22.707 458 298 12 138 577 8 427 5.03e-25 108
MS.gene90825.t1 MTR_2g101320 28.896 308 202 5 74 367 37 341 2.31e-21 99.0
MS.gene90825.t1 MTR_2g101320 26.949 449 250 15 130 522 137 563 2.20e-20 95.9
MS.gene90825.t1 MTR_2g101320 26.471 238 173 2 107 343 11 247 5.61e-19 91.3
MS.gene90825.t1 MTR_2g101310 25.403 248 184 1 96 343 1 247 3.34e-20 94.4
MS.gene90825.t1 MTR_2g101310 21.912 502 281 12 4 462 69 502 4.77e-11 65.9
MS.gene90825.t1 MTR_8g467780 25.469 373 214 10 76 445 10 321 2.10e-19 91.7
MS.gene90825.t1 MTR_2g096760 31.707 205 121 4 134 322 14 215 2.62e-19 91.3
MS.gene90825.t1 MTR_8g073260 26.756 299 178 6 169 452 46 318 5.15e-19 90.5
MS.gene90825.t1 MTR_8g066670 23.622 381 230 9 138 482 1078 1433 1.92e-17 87.0
MS.gene90825.t1 MTR_1g059930 27.090 299 177 8 169 452 47 319 4.99e-17 84.3
MS.gene90825.t1 MTR_8g068990 24.860 358 194 11 169 489 47 366 2.21e-16 82.4
MS.gene90825.t1 MTR_5g085830 26.098 410 256 12 169 562 312 690 3.11e-16 82.8
MS.gene90825.t1 MTR_7g451420 24.611 321 206 6 138 445 12 309 3.27e-16 80.5
MS.gene90825.t1 MTR_5g085810 27.128 376 238 11 169 533 338 688 4.82e-16 82.0
MS.gene90825.t1 MTR_5g085480 24.319 477 310 14 128 562 207 674 8.53e-16 81.3
MS.gene90825.t1 MTR_5g085480 24.319 477 310 14 128 562 47 514 9.87e-16 80.9
MS.gene90825.t1 MTR_8g072510 23.653 427 245 13 169 556 45 429 1.03e-15 80.1
MS.gene90825.t1 MTR_4g063830 30.288 208 124 7 132 322 13 216 1.20e-15 80.1
MS.gene90825.t1 MTR_8g069880 22.636 349 206 8 169 480 42 363 2.22e-15 79.3
MS.gene90825.t1 MTR_7g099570 27.917 240 158 6 135 361 9 246 5.18e-15 78.6
MS.gene90825.t1 MTR_7g021090 23.099 355 208 9 169 488 44 368 2.61e-14 75.5
MS.gene90825.t1 MTR_8g040930 23.684 342 198 10 177 480 2 318 3.66e-14 75.1
MS.gene90825.t1 MTR_8g041240 23.684 342 198 10 177 480 2 318 3.66e-14 75.1
MS.gene90825.t1 MTR_8g062410 25.000 336 200 10 138 453 13 316 8.01e-14 74.3
MS.gene90825.t1 MTR_5g043640 33.708 178 111 5 132 306 20 193 1.33e-13 71.2
MS.gene90825.t1 MTR_3g016210 24.917 301 178 9 169 445 45 321 3.56e-13 72.4
MS.gene90825.t1 MTR_3g055310 29.670 182 106 5 383 542 262 443 3.64e-13 72.4
MS.gene90825.t1 MTR_3g055310 29.670 182 106 5 383 542 288 469 3.80e-13 72.4
MS.gene90825.t1 MTR_3g055310 29.670 182 106 5 383 542 315 496 4.56e-13 72.4
MS.gene90825.t1 MTR_3g055310 29.670 182 106 5 383 542 290 471 4.64e-13 72.0
MS.gene90825.t1 MTR_3g055310 29.670 182 106 5 383 542 147 328 5.07e-13 71.2
MS.gene90825.t1 MTR_3g055310 29.670 182 106 5 383 542 210 391 5.09e-13 71.6
MS.gene90825.t1 MTR_8g039620 21.809 376 234 9 169 509 49 399 6.06e-13 71.6
MS.gene90825.t1 MTR_8g080080 26.183 317 194 9 72 352 77 389 8.19e-13 71.6
MS.gene90825.t1 MTR_1g112830 29.952 207 137 5 120 322 120 322 1.45e-12 70.9
MS.gene90825.t1 MTR_3g085830 28.342 187 125 3 131 309 105 290 2.05e-12 70.5
MS.gene90825.t1 MTR_3g085830 27.208 283 173 9 100 355 108 384 3.83e-12 69.7
MS.gene90825.t1 MTR_5g028190 25.284 352 185 11 213 544 213 506 1.57e-11 67.4
MS.gene90825.t1 MTR_6g027840 27.935 247 158 7 90 323 125 364 2.13e-11 67.0
MS.gene90825.t1 MTR_4g116160 30.319 188 127 4 135 322 40 223 2.69e-11 67.0
MS.gene90825.t1 MTR_4g116160 30.319 188 127 4 135 322 40 223 3.40e-11 66.2
MS.gene90825.t1 MTR_4g129470 30.392 204 98 6 128 294 9 205 4.01e-11 66.2
MS.gene90825.t1 MTR_4g021880 25.806 217 145 5 121 322 86 301 5.80e-11 65.1
MS.gene90825.t1 MTR_1g089180 28.947 228 134 8 114 317 198 421 7.48e-11 65.1
MS.gene90825.t1 MTR_2g438740 21.257 541 333 15 53 545 57 552 8.22e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90825.t1 AT3G12360 80.684 585 104 4 14 593 10 590 0.0 954
MS.gene90825.t1 AT3G12360 80.895 581 102 4 18 593 2 578 0.0 950
MS.gene90825.t1 AT3G09550 71.502 586 148 3 24 593 25 607 0.0 833
MS.gene90825.t1 AT3G09550 71.502 586 148 3 24 593 25 607 0.0 833
MS.gene90825.t1 AT3G09550 71.502 586 148 3 24 593 32 614 0.0 832
MS.gene90825.t1 AT2G31820 43.534 549 271 7 60 593 138 662 7.75e-138 416
MS.gene90825.t1 AT1G05640 44.404 554 270 7 56 593 96 627 7.37e-136 410
MS.gene90825.t1 AT5G60070 46.595 558 244 13 61 593 20 548 3.29e-135 405
MS.gene90825.t1 AT2G01680 43.110 508 273 8 99 593 28 532 2.18e-129 390
MS.gene90825.t1 AT1G07710 44.565 552 264 5 61 593 15 543 2.36e-129 390
MS.gene90825.t1 AT1G07710 44.565 552 264 5 61 593 15 543 2.36e-129 390
MS.gene90825.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene90825.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene90825.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene90825.t1 AT5G02620 41.899 537 248 8 61 556 5 518 1.12e-118 363
MS.gene90825.t1 AT5G02620 41.899 537 248 8 61 556 5 518 1.12e-118 363
MS.gene90825.t1 AT1G10340 25.202 496 309 12 111 552 51 538 2.23e-34 138
MS.gene90825.t1 AT5G54710 27.308 520 284 17 68 552 97 557 1.47e-33 135
MS.gene90825.t1 AT5G54710 27.308 520 284 17 68 552 142 602 2.30e-33 135
MS.gene90825.t1 AT1G10340 24.593 492 313 11 111 552 51 534 2.36e-33 135
MS.gene90825.t1 AT1G34050 26.145 524 294 15 108 554 28 535 6.25e-33 134
MS.gene90825.t1 AT2G24600 26.892 502 290 18 72 538 70 529 3.52e-32 131
MS.gene90825.t1 AT2G24600 26.892 502 290 18 72 538 70 529 3.52e-32 131
MS.gene90825.t1 AT4G03500 26.047 549 280 17 58 522 54 560 2.27e-30 126
MS.gene90825.t1 AT4G03500 26.047 549 280 17 58 522 54 560 2.27e-30 126
MS.gene90825.t1 AT4G03500 26.047 549 280 17 58 522 77 583 2.41e-30 126
MS.gene90825.t1 AT1G03670 25.581 516 328 9 74 562 107 593 2.54e-26 114
MS.gene90825.t1 AT4G03490 27.674 430 267 12 133 551 180 576 5.93e-25 110
MS.gene90825.t1 AT4G03490 27.830 424 262 12 133 545 170 560 7.88e-25 109
MS.gene90825.t1 AT4G03490 27.830 424 262 12 133 545 180 570 8.09e-25 109
MS.gene90825.t1 AT4G03460 26.406 409 256 8 128 522 158 535 8.30e-24 106
MS.gene90825.t1 AT4G03460 26.406 409 256 8 128 522 190 567 8.97e-24 106
MS.gene90825.t1 AT4G03490 24.915 586 332 18 65 574 9 562 1.02e-23 106
MS.gene90825.t1 AT5G50140 22.913 515 297 16 126 563 22 513 1.04e-23 105
MS.gene90825.t1 AT4G03490 25.277 542 318 15 65 551 19 528 2.41e-23 105
MS.gene90825.t1 AT5G54700 28.435 313 159 9 223 523 20 279 1.38e-22 99.8
MS.gene90825.t1 AT4G10720 24.096 415 258 12 169 559 40 421 3.30e-22 100
MS.gene90825.t1 AT5G54700 27.809 356 182 12 202 523 2 316 6.72e-22 99.8
MS.gene90825.t1 AT4G10720 25.076 327 210 6 169 477 40 349 1.95e-21 97.4
MS.gene90825.t1 AT4G14390 24.722 449 281 11 128 556 226 637 2.14e-20 95.9
MS.gene90825.t1 AT4G14390 24.722 449 281 11 128 556 245 656 2.62e-20 95.5
MS.gene90825.t1 AT4G14390 24.889 450 280 12 128 556 245 657 2.97e-20 95.5
MS.gene90825.t1 AT4G03480 26.076 395 232 9 118 482 295 659 1.56e-19 93.2
MS.gene90825.t1 AT4G03480 26.076 395 232 9 118 482 292 656 1.64e-19 93.2
MS.gene90825.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene90825.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene90825.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene90825.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene90825.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene90825.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene90825.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene90825.t1 AT5G15500 23.427 461 288 15 130 559 1 427 2.69e-18 88.2
MS.gene90825.t1 AT2G24600 26.420 405 232 14 72 450 70 434 1.74e-17 86.3
MS.gene90825.t1 AT2G24600 26.420 405 232 14 72 450 70 434 1.74e-17 86.3
MS.gene90825.t1 AT4G03450 24.505 555 306 17 58 528 45 570 1.80e-17 86.7
MS.gene90825.t1 AT5G51160 25.000 352 198 8 157 478 38 353 2.37e-17 85.5
MS.gene90825.t1 AT4G03450 24.505 555 306 17 58 528 45 570 5.25e-17 85.1
MS.gene90825.t1 AT4G03470 26.044 503 294 18 77 542 157 618 1.33e-16 84.0
MS.gene90825.t1 AT3G04140 27.622 286 160 8 100 342 105 386 2.91e-16 82.8
MS.gene90825.t1 AT1G14500 22.769 325 215 5 169 475 40 346 3.82e-15 78.6
MS.gene90825.t1 AT2G03430 34.659 176 106 5 135 306 16 186 8.47e-15 74.7
MS.gene90825.t1 AT4G14390 26.748 329 195 8 128 443 226 521 4.90e-13 72.4
MS.gene90825.t1 AT5G54620 29.570 186 119 2 169 342 40 225 8.05e-13 71.2
MS.gene90825.t1 AT5G54610 27.717 184 123 2 169 342 40 223 8.10e-13 71.2
MS.gene90825.t1 AT3G18670 23.111 450 296 12 123 530 113 554 1.08e-12 71.2
MS.gene90825.t1 AT2G28840 27.273 209 129 7 132 322 12 215 2.01e-12 70.1
MS.gene90825.t1 AT4G03440 23.126 467 308 12 104 550 258 693 3.93e-12 69.7
MS.gene90825.t1 AT4G03440 23.126 467 308 12 104 550 251 686 4.34e-12 69.7
MS.gene90825.t1 AT4G03440 23.126 467 308 12 104 550 251 686 4.34e-12 69.7
MS.gene90825.t1 AT4G14400 23.242 512 310 20 75 538 71 547 3.99e-11 66.2
MS.gene90825.t1 AT4G14400 23.242 512 310 20 75 538 71 547 3.99e-11 66.2
MS.gene90825.t1 AT3G18670 23.684 304 183 7 236 530 346 609 4.68e-11 66.2
MS.gene90825.t1 AT4G14400 23.242 512 310 20 75 538 137 613 5.65e-11 65.9

Find 137 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTGCATATGGCTGTAAA+AGG 0.222840 1.4:+87830101 MS.gene90825:CDS
TGATATTGATTCTCAGATAA+TGG 0.227356 1.4:+87828847 MS.gene90825:CDS
GTGGAGTTTCCTCAGCTCTT+TGG 0.250605 1.4:-87831171 None:intergenic
GTTATGCTTCCTGACAAATT+TGG 0.259995 1.4:+87830173 MS.gene90825:CDS
GAACGAGTGGGCTGCAATTC+TGG 0.267500 1.4:+87831529 MS.gene90825:CDS
ACCTCCAATTTCAACCTTCC+AGG 0.283929 1.4:+87828466 MS.gene90825:CDS
ACTCAAAGAGATTCAGAAAA+AGG 0.285730 1.4:+87828602 MS.gene90825:CDS
AAGGACATCCTCTCTCGATA+TGG 0.290107 1.4:+87831020 MS.gene90825:CDS
CCAACCTGGAAGGTTGAAAT+TGG 0.303178 1.4:-87828470 None:intergenic
TTCATTTGCAGCCATTGTTC+AGG 0.330505 1.4:+87829818 MS.gene90825:intron
CTGCTTCTCTTTCTTCCTCA+TGG 0.331730 1.4:-87831633 None:intergenic
GCAATTCTGGTTACAGTTGT+TGG 0.335512 1.4:+87831542 MS.gene90825:CDS
GATATTGATTCTCAGATAAT+GGG 0.350929 1.4:+87828848 MS.gene90825:CDS
AATTCGATCAACCTCGGAAT+TGG 0.351942 1.4:-87831702 None:intergenic
TGAAGAGTCATCAGATATAA+AGG 0.366092 1.4:+87831001 MS.gene90825:CDS
TTTGTTTACTGCTGCTGAAA+AGG 0.377535 1.4:+87828967 MS.gene90825:CDS
AGATGGCGACGGAGATATTT+CGG 0.380641 1.4:-87828657 None:intergenic
GTTCAAATTACCCTTGTTAG+AGG 0.385400 1.4:+87831392 MS.gene90825:CDS
GTGATAATATCCGGAGTTAT+TGG 0.388823 1.4:+87831569 MS.gene90825:CDS
GTGAAACTAAAGCAGAGAAA+AGG 0.392404 1.4:+87831414 MS.gene90825:CDS
TTTGCATTTAGCTGCTCGTC+CGG 0.403120 1.4:+87830001 MS.gene90825:CDS
GTCAAAGGATGGCAGCTTGT+TGG 0.404723 1.4:+87829950 MS.gene90825:CDS
GGGTCATCTTGATGTTGTTA+AGG 0.408314 1.4:+87828988 MS.gene90825:CDS
AGAAAGAGAAGCAGCTAGCC+AGG 0.411228 1.4:+87831642 MS.gene90825:CDS
AGGACATCCTCTCTCGATAT+GGG 0.415929 1.4:+87831021 MS.gene90825:CDS
CACCACTGTCACCGAGTTTG+TGG 0.435710 1.4:-87831213 None:intergenic
CTCGTCGCTGCTGTTATAAG+TGG 0.455896 1.4:-87829897 None:intergenic
TCCGTCGTCCGCGACGGCGC+CGG 0.456322 1.4:+87828679 MS.gene90825:CDS
AGGCTTTCACGATTTCTGTA+TGG 0.466846 1.4:-87830025 None:intergenic
TTGCATTTAGCTGCTCGTCC+GGG 0.469773 1.4:+87830002 MS.gene90825:CDS
GCTGCTATATTCACCGTACC+TGG 0.472210 1.4:+87831263 MS.gene90825:CDS
TCCTCAGTTCGTCCCTTGGT+TGG 0.473921 1.4:-87831067 None:intergenic
CATTTACGTTTGTGTCTGGC+AGG 0.475438 1.4:-87830923 None:intergenic
TTGTTTACTGCTGCTGAAAA+GGG 0.479987 1.4:+87828968 MS.gene90825:CDS
GCTCAGCAAAGACCCTCAAT+TGG 0.481998 1.4:+87830049 MS.gene90825:CDS
CTTTAGTTTCACCTCTAACA+AGG 0.482809 1.4:-87831403 None:intergenic
CCAAGCTTAAGCAAAACTAT+TGG 0.486154 1.4:+87829858 MS.gene90825:CDS
TGAGTTGGATCCACTTCTCC+TGG 0.491866 1.4:-87831660 None:intergenic
GGGGATAACGATGATGGATC+AGG 0.492044 1.4:+87831287 MS.gene90825:CDS
CAGTCCTCCGAGCCAATTGA+GGG 0.492228 1.4:-87830061 None:intergenic
TCCTTTCAAACTCAGGAAAA+CGG 0.494021 1.4:+87828708 MS.gene90825:CDS
TGAAACTAAAGCAGAGAAAA+GGG 0.501105 1.4:+87831415 MS.gene90825:CDS
AGGGCAAACTGCATTGCATA+TGG 0.501695 1.4:+87830091 MS.gene90825:CDS
TCAGCTCTTTGGATATATTG+TGG 0.502735 1.4:-87831160 None:intergenic
ATCGTTATCCCCACCAGGTA+CGG 0.503271 1.4:-87831276 None:intergenic
TTGAGGGTCTTTGCTGAGCA+AGG 0.503619 1.4:-87830045 None:intergenic
AATGCATTTACGTTTGTGTC+TGG 0.503703 1.4:-87830927 None:intergenic
TTGGAAATTGCAAGATCCAA+TGG 0.508338 1.4:+87829969 MS.gene90825:CDS
AAGTACGTGAAGCAAGTAAC+GGG 0.508570 1.4:+87828752 MS.gene90825:CDS
GCTCGGAGGACTGACAAGAA+AGG 0.509842 1.4:+87830071 MS.gene90825:CDS
GACGGAGATATTTCGGAAAG+TGG 0.514348 1.4:-87828650 None:intergenic
CTCGGAGGACTGACAAGAAA+GGG 0.519611 1.4:+87830072 MS.gene90825:CDS
TTCACGATTTCTGTATGGCC+CGG 0.525638 1.4:-87830020 None:intergenic
GTTGGAGGAGTGATAATATC+CGG 0.527167 1.4:+87831560 MS.gene90825:CDS
GCCGGCGCCGTCGCGGACGA+CGG 0.529146 1.4:-87828680 None:intergenic
CATTGCATATGGCTGTAAAA+GGG 0.531587 1.4:+87830102 MS.gene90825:CDS
GAAAGATGTTCACACACAGC+TGG 0.535788 1.4:+87831109 MS.gene90825:CDS
CCTGGTGGGGATAACGATGA+TGG 0.535860 1.4:+87831281 MS.gene90825:CDS
GCCATCTCCGTCGTCCGCGA+CGG 0.536247 1.4:+87828673 MS.gene90825:CDS
GCTGTGTTGCCAAATTTGTC+AGG 0.537540 1.4:-87830182 None:intergenic
GGAAAACGGATCGATCAAGC+AGG 0.537963 1.4:+87828722 MS.gene90825:CDS
CTATATTCACCGTACCTGGT+GGG 0.538227 1.4:+87831267 MS.gene90825:CDS
CAGCATTGCATGTGGCAACC+AGG 0.541967 1.4:+87830201 MS.gene90825:CDS
AAGCAGCTAGCCAGGAGAAG+TGG 0.542236 1.4:+87831650 MS.gene90825:CDS
TCAGTCCTCCGAGCCAATTG+AGG 0.545108 1.4:-87830062 None:intergenic
TCGGAAAGTGGGTTCTGTGT+TGG 0.547229 1.4:-87828638 None:intergenic
GACTAGAGCCGGCGCCGTCG+CGG 0.548417 1.4:-87828687 None:intergenic
TTGCATATTGCTGCTAGTCA+AGG 0.549825 1.4:+87829073 MS.gene90825:CDS
CAGATAATGGGTACTTTGAG+TGG 0.549949 1.4:+87828860 MS.gene90825:CDS
CTCTGAATGATGCCATGAGT+TGG 0.551504 1.4:-87831675 None:intergenic
AAGAGCTGAGGAAACTCCAC+AGG 0.552962 1.4:+87831174 MS.gene90825:CDS
ATTCTGGTTACAGTTGTTGG+AGG 0.554005 1.4:+87831545 MS.gene90825:CDS
GATTAACAAGCTCATGTGGT+TGG 0.554304 1.4:+87831448 MS.gene90825:CDS
AAGGGACGAACTGAGGAAAA+CGG 0.554349 1.4:+87831073 MS.gene90825:CDS
ACCTGGAAGGTTGAAATTGG+AGG 0.558297 1.4:-87828467 None:intergenic
GCCGTCGCGGACGACGGAGA+TGG 0.559929 1.4:-87828674 None:intergenic
CCATCATCGTTATCCCCACC+AGG 0.564948 1.4:-87831281 None:intergenic
TTTAGTTTCACCTCTAACAA+GGG 0.565107 1.4:-87831402 None:intergenic
GAGTTTGAAAGGACTAGAGC+CGG 0.567456 1.4:-87828698 None:intergenic
GCAAAGACCCTCAATTGGCT+CGG 0.569896 1.4:+87830054 MS.gene90825:CDS
GCTCTAGTCCTTTCAAACTC+AGG 0.572097 1.4:+87828701 MS.gene90825:CDS
CATTGTTAATTCCTTCCCTG+TGG 0.572226 1.4:-87831190 None:intergenic
AGCAGAGAAAAGGGTAGTTG+AGG 0.573019 1.4:+87831424 MS.gene90825:CDS
TCGTCGGTCGGAGGAACGAG+TGG 0.574175 1.4:+87831516 MS.gene90825:CDS
CGCTGCTGTTATAAGTGGAG+TGG 0.575162 1.4:-87829892 None:intergenic
GCTGCTAGTCAAGGACATCA+TGG 0.575482 1.4:+87829082 MS.gene90825:CDS
ATAAGTGGAGTGGCGTTGGA+TGG 0.578501 1.4:-87829882 None:intergenic
GCAGCTCAAAGAGGTGATGT+TGG 0.583391 1.4:+87828803 MS.gene90825:CDS
GTGAATGAAGAGAATGAACT+TGG 0.587406 1.4:+87828935 MS.gene90825:CDS
TCTGAGAATCAATATCAAGA+AGG 0.587872 1.4:-87828841 None:intergenic
ACGGAGATATTTCGGAAAGT+GGG 0.587917 1.4:-87828649 None:intergenic
TGTTATAAGTGGAGTGGCGT+TGG 0.592828 1.4:-87829886 None:intergenic
TTCAGAGTTCTCCAATTCCG+AGG 0.592884 1.4:+87831691 MS.gene90825:CDS
GCTATATTCACCGTACCTGG+TGG 0.598478 1.4:+87831266 MS.gene90825:CDS
ATCTAGTAAAACCTGAACAA+TGG 0.600510 1.4:-87829829 None:intergenic
GCCTCTTCGTACATAGTCGT+CGG 0.600824 1.4:+87831500 MS.gene90825:CDS
CGCATAAATTCGATCAACCT+CGG 0.601587 1.4:-87831708 None:intergenic
CGTACATAGTCGTCGGTCGG+AGG 0.602499 1.4:+87831507 MS.gene90825:CDS
GTTGGCTTCTGTCTGTACCT+CGG 0.602568 1.4:+87831466 MS.gene90825:CDS
CTGAGGAAACTCCACAGGGA+AGG 0.603249 1.4:+87831179 MS.gene90825:CDS
TATATTCACCGTACCTGGTG+GGG 0.603908 1.4:+87831268 MS.gene90825:CDS
GAAGTACGTGAAGCAAGTAA+CGG 0.604371 1.4:+87828751 MS.gene90825:CDS
GGAGAAGTGGATCCAACTCA+TGG 0.605497 1.4:+87831663 MS.gene90825:CDS
AGAAGAAGAACCAACCTGGA+AGG 0.609441 1.4:-87828480 None:intergenic
GACGAGAGGGCACGTCGAAG+TGG 0.609993 1.4:+87829914 MS.gene90825:CDS
GGTGAATGAACTTCTGTCAA+AGG 0.612992 1.4:+87829935 MS.gene90825:CDS
TTATAACAGCAGCGACGAGA+GGG 0.613377 1.4:+87829901 MS.gene90825:CDS
AATGAACTTCTGTCAAAGGA+TGG 0.613527 1.4:+87829939 MS.gene90825:CDS
TCTGATGACTCTTCAGAGAG+AGG 0.615975 1.4:-87830993 None:intergenic
AATTAACAATGCCACAAACT+CGG 0.616650 1.4:+87831202 MS.gene90825:CDS
CGTCGGTCGGAGGAACGAGT+GGG 0.619749 1.4:+87831517 MS.gene90825:CDS
ACCAACCAAGGGACGAACTG+AGG 0.620407 1.4:+87831066 MS.gene90825:CDS
CTAACGAGCTCAACCAACCA+AGG 0.621035 1.4:+87831054 MS.gene90825:CDS
CTTCATCTAGCAGCTCAAAG+AGG 0.623399 1.4:+87828794 MS.gene90825:CDS
CTTCGTACATAGTCGTCGGT+CGG 0.624785 1.4:+87831504 MS.gene90825:CDS
CTTATAACAGCAGCGACGAG+AGG 0.631608 1.4:+87829900 MS.gene90825:CDS
TGCCACAAACTCGGTGACAG+TGG 0.632510 1.4:+87831211 MS.gene90825:CDS
AGTCATAGTGCCAATAACTC+CGG 0.636725 1.4:-87831579 None:intergenic
TGGCAACACAGCATTGCATG+TGG 0.637663 1.4:+87830193 MS.gene90825:CDS
GGACATCCTCTCTCGATATG+GGG 0.638757 1.4:+87831022 MS.gene90825:CDS
TGACTAGCAGCAATATGCAA+AGG 0.639675 1.4:-87829070 None:intergenic
ACAATATATCCAAAGAGCTG+AGG 0.644642 1.4:+87831162 MS.gene90825:CDS
AAGACCCTCAATTGGCTCGG+AGG 0.651684 1.4:+87830057 MS.gene90825:CDS
GCGGACGACGGAGATGGCGA+CGG 0.652416 1.4:-87828668 None:intergenic
GGCTTCTGTCTGTACCTCGG+TGG 0.655940 1.4:+87831469 MS.gene90825:CDS
GAAAACGGATCGATCAAGCA+GGG 0.663000 1.4:+87828723 MS.gene90825:CDS
TAACGATGATGGATCAGGAG+TGG 0.663853 1.4:+87831292 MS.gene90825:CDS
TAAGTGCCCCATATCGAGAG+AGG 0.665007 1.4:-87831028 None:intergenic
AGGTGATTAACAAGCTCATG+TGG 0.671742 1.4:+87831444 MS.gene90825:CDS
ACCGACGACTATGTACGAAG+AGG 0.681066 1.4:-87831501 None:intergenic
CACAAACTCGGTGACAGTGG+TGG 0.691648 1.4:+87831214 MS.gene90825:CDS
TAACGAGCTCAACCAACCAA+GGG 0.693605 1.4:+87831055 MS.gene90825:CDS
CTATGACTTACTATGTAGTG+AGG 0.708286 1.4:+87831594 MS.gene90825:CDS
CTAAGAGAACAAGATCCATG+AGG 0.720939 1.4:+87831618 MS.gene90825:CDS
AGAGCTGAGGAAACTCCACA+GGG 0.730372 1.4:+87831175 MS.gene90825:CDS
AAAAGGGCAGAGCTGTGACG+TGG 0.742175 1.4:+87830118 MS.gene90825:CDS
AGAGGCAATAAATGCCACCG+AGG 0.784742 1.4:-87831483 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAAGAAAACAAG+AGG - chr1.4:87830786-87830805 None:intergenic 15.0%
!!! AATATTAGATTTTTCATTCA+AGG - chr1.4:87830859-87830878 None:intergenic 15.0%
!!! ATTTTGCTTTTTGTAAAAAT+GGG + chr1.4:87829195-87829214 MS.gene90825:intron 15.0%
!!! TATTTTGCTTTTTGTAAAAA+TGG + chr1.4:87829194-87829213 MS.gene90825:intron 15.0%
!!! TTTTTTTAAGAAGCTATTAA+TGG + chr1.4:87829587-87829606 MS.gene90825:intron 15.0%
!! AATTTAATCAGATATACTTC+TGG - chr1.4:87829475-87829494 None:intergenic 20.0%
!! GCAACTACTTAAATAAATAA+AGG - chr1.4:87830588-87830607 None:intergenic 20.0%
!! TAATACTACTACTACAAATA+TGG - chr1.4:87830360-87830379 None:intergenic 20.0%
!! TCATAATTGAGTTTCTTTAT+TGG - chr1.4:87829552-87829571 None:intergenic 20.0%
!!! TATTTTGAATGAATTGACTT+TGG + chr1.4:87829229-87829248 MS.gene90825:intron 20.0%
!!! TGTTATTTTGCTTTGAAAAT+TGG + chr1.4:87830662-87830681 MS.gene90825:intron 20.0%
!!! TTTTTTTTGGAACATATTCT+TGG + chr1.4:87829427-87829446 MS.gene90825:intron 20.0%
! AAACATGTTATATGAGACAA+GGG + chr1.4:87830728-87830747 MS.gene90825:intron 25.0%
! AACATCAAAACAAAGGAAAA+AGG - chr1.4:87829155-87829174 None:intergenic 25.0%
! AAGGTAAAACGATTTATGTT+TGG + chr1.4:87829266-87829285 MS.gene90825:intron 25.0%
! AGGTAAAACGATTTATGTTT+GGG + chr1.4:87829267-87829286 MS.gene90825:intron 25.0%
! ATTAACTTACTCGAACAAAT+CGG + chr1.4:87830310-87830329 MS.gene90825:intron 25.0%
! CTCAATTATGATGCTATTAA+TGG + chr1.4:87829561-87829580 MS.gene90825:intron 25.0%
! TTACAGTGAAGTAAAAAGAT+GGG - chr1.4:87828515-87828534 None:intergenic 25.0%
! TTGAGTATTTATCTTGCTTA+AGG + chr1.4:87829523-87829542 MS.gene90825:intron 25.0%
! TTTAAGTAGTTGCAAGTATA+AGG + chr1.4:87830595-87830614 MS.gene90825:intron 25.0%
! TTTACAGTGAAGTAAAAAGA+TGG - chr1.4:87828516-87828535 None:intergenic 25.0%
!! CAATTTTGTCTAGAAGTTTT+GGG + chr1.4:87830760-87830779 MS.gene90825:intron 25.0%
!! TATATTGTGGACATTTTTGT+TGG - chr1.4:87831150-87831169 None:intergenic 25.0%
!! TCAATTTTGTCTAGAAGTTT+TGG + chr1.4:87830759-87830778 MS.gene90825:intron 25.0%
!!! ATTGTTGTTTCTCAATTTCT+TGG + chr1.4:87830876-87830895 MS.gene90825:intron 25.0%
!!! GATATTGATTCTCAGATAAT+GGG + chr1.4:87828848-87828867 MS.gene90825:CDS 25.0%
!!! TGATATTGATTCTCAGATAA+TGG + chr1.4:87828847-87828866 MS.gene90825:CDS 25.0%
!!! TTTTCCTTTGTTTTGATGTT+GGG + chr1.4:87829155-87829174 MS.gene90825:intron 25.0%
!!! TTTTTCCTTTGTTTTGATGT+TGG + chr1.4:87829154-87829173 MS.gene90825:intron 25.0%
AAATCCCAACATCAAAACAA+AGG - chr1.4:87829162-87829181 None:intergenic 30.0%
AAGTCTCCAATATTGAAAAC+AGG + chr1.4:87830397-87830416 MS.gene90825:intron 30.0%
AATAAGACAACGTTGATGTT+TGG - chr1.4:87829692-87829711 None:intergenic 30.0%
AATTAACAATGCCACAAACT+CGG + chr1.4:87831202-87831221 MS.gene90825:CDS 30.0%
ACATAGCATTAACTCTACTA+CGG - chr1.4:87829658-87829677 None:intergenic 30.0%
ACTCAAAGAGATTCAGAAAA+AGG + chr1.4:87828602-87828621 MS.gene90825:CDS 30.0%
AGATTACTACAAAGAACAGA+AGG - chr1.4:87829788-87829807 None:intergenic 30.0%
ATCTAGTAAAACCTGAACAA+TGG - chr1.4:87829832-87829851 None:intergenic 30.0%
GAAACATGTTATATGAGACA+AGG + chr1.4:87830727-87830746 MS.gene90825:intron 30.0%
GTGCACACTACTTAAAAAAA+TGG - chr1.4:87830698-87830717 None:intergenic 30.0%
TACAGTGAAGTAAAAAGATG+GGG - chr1.4:87828514-87828533 None:intergenic 30.0%
TCATCACTATATGTACTGTA+TGG - chr1.4:87830280-87830299 None:intergenic 30.0%
TCTGAGAATCAATATCAAGA+AGG - chr1.4:87828844-87828863 None:intergenic 30.0%
TGAAACTAAAGCAGAGAAAA+GGG + chr1.4:87831415-87831434 MS.gene90825:CDS 30.0%
TGAAGAGTCATCAGATATAA+AGG + chr1.4:87831001-87831020 MS.gene90825:CDS 30.0%
TTAACTTACTCGAACAAATC+GGG + chr1.4:87830311-87830330 MS.gene90825:intron 30.0%
! AACATCAACGTTGTCTTATT+TGG + chr1.4:87829692-87829711 MS.gene90825:intron 30.0%
! AAGATTTTCAGCAATGTCAA+GGG - chr1.4:87830973-87830992 None:intergenic 30.0%
! GTTTCTAAAAAGAATCGATC+TGG + chr1.4:87829040-87829059 MS.gene90825:CDS 30.0%
! TAGCTACCTGTTTTCAATAT+TGG - chr1.4:87830406-87830425 None:intergenic 30.0%
! TTTAGTTTCACCTCTAACAA+GGG - chr1.4:87831405-87831424 None:intergenic 30.0%
!! CAATAGTTTTGCTTAAGCTT+GGG - chr1.4:87829860-87829879 None:intergenic 30.0%
!! TATTGCGCTTTTTACATCTT+TGG + chr1.4:87831358-87831377 MS.gene90825:CDS 30.0%
!! TTTGGCTAAAATTGAGTTGA+AGG + chr1.4:87829247-87829266 MS.gene90825:intron 30.0%
!!! ATGCAAAGCATTTTTTCCAT+TGG - chr1.4:87829988-87830007 None:intergenic 30.0%
!!! TTGTTTTGATGTTGGGATTT+TGG + chr1.4:87829162-87829181 MS.gene90825:intron 30.0%
AAGTAGTTGCAAGTATAAGG+TGG + chr1.4:87830598-87830617 MS.gene90825:intron 35.0%
AATGAACTTCTGTCAAAGGA+TGG + chr1.4:87829939-87829958 MS.gene90825:CDS 35.0%
AATGCATTTACGTTTGTGTC+TGG - chr1.4:87830930-87830949 None:intergenic 35.0%
ACAATATATCCAAAGAGCTG+AGG + chr1.4:87831162-87831181 MS.gene90825:CDS 35.0%
ACAGTGAAGTAAAAAGATGG+GGG - chr1.4:87828513-87828532 None:intergenic 35.0%
ACATGCTCAAAAGTAACTAG+GGG - chr1.4:87830829-87830848 None:intergenic 35.0%
CATTGCATATGGCTGTAAAA+GGG + chr1.4:87830102-87830121 MS.gene90825:CDS 35.0%
CCAAGCTTAAGCAAAACTAT+TGG + chr1.4:87829858-87829877 MS.gene90825:CDS 35.0%
CTATGACTTACTATGTAGTG+AGG + chr1.4:87831594-87831613 MS.gene90825:CDS 35.0%
CTTGAGTAGCTTCAATTTGT+GGG + chr1.4:87829731-87829750 MS.gene90825:intron 35.0%
GACATGCTCAAAAGTAACTA+GGG - chr1.4:87830830-87830849 None:intergenic 35.0%
GCTTCAAGTAGAATCAGTTA+TGG + chr1.4:87829365-87829384 MS.gene90825:intron 35.0%
GTGAAACTAAAGCAGAGAAA+AGG + chr1.4:87831414-87831433 MS.gene90825:CDS 35.0%
GTGAATGAAGAGAATGAACT+TGG + chr1.4:87828935-87828954 MS.gene90825:CDS 35.0%
GTGATAATATCCGGAGTTAT+TGG + chr1.4:87831569-87831588 MS.gene90825:CDS 35.0%
GTTATGCTTCCTGACAAATT+TGG + chr1.4:87830173-87830192 MS.gene90825:CDS 35.0%
GTTCAAATTACCCTTGTTAG+AGG + chr1.4:87831392-87831411 MS.gene90825:CDS 35.0%
TCAGCTCTTTGGATATATTG+TGG - chr1.4:87831163-87831182 None:intergenic 35.0%
TCAGTTATGGAGACAAAATC+AGG + chr1.4:87829378-87829397 MS.gene90825:intron 35.0%
TCCTTTCAAACTCAGGAAAA+CGG + chr1.4:87828708-87828727 MS.gene90825:CDS 35.0%
TGACATGCTCAAAAGTAACT+AGG - chr1.4:87830831-87830850 None:intergenic 35.0%
TGCTACAAAAAATGCAAACG+AGG + chr1.4:87830430-87830449 MS.gene90825:intron 35.0%
TTGGAAATTGCAAGATCCAA+TGG + chr1.4:87829969-87829988 MS.gene90825:CDS 35.0%
TTGTTTACTGCTGCTGAAAA+GGG + chr1.4:87828968-87828987 MS.gene90825:CDS 35.0%
TTTGTTTACTGCTGCTGAAA+AGG + chr1.4:87828967-87828986 MS.gene90825:CDS 35.0%
! CTTTAGTTTCACCTCTAACA+AGG - chr1.4:87831406-87831425 None:intergenic 35.0%
! GAAGATTTTCAGCAATGTCA+AGG - chr1.4:87830974-87830993 None:intergenic 35.0%
! TACGCTTTTACGTTTATTGC+AGG + chr1.4:87828569-87828588 MS.gene90825:intron 35.0%
! TAGCTTCAATTTGTGGGTTA+TGG + chr1.4:87829737-87829756 MS.gene90825:intron 35.0%
! TTTTACATCTTTGGCTGTTG+TGG + chr1.4:87831367-87831386 MS.gene90825:CDS 35.0%
!! CCAATAGTTTTGCTTAAGCT+TGG - chr1.4:87829861-87829880 None:intergenic 35.0%
!!! GACATTTTTGTTGGTTCTCT+TGG - chr1.4:87831141-87831160 None:intergenic 35.0%
AAGTACGTGAAGCAAGTAAC+GGG + chr1.4:87828752-87828771 MS.gene90825:CDS 40.0%
AATTCGATCAACCTCGGAAT+TGG - chr1.4:87831705-87831724 None:intergenic 40.0%
ACGGAGATATTTCGGAAAGT+GGG - chr1.4:87828652-87828671 None:intergenic 40.0%
AGATAGAAGAAGAACCAACC+TGG - chr1.4:87828487-87828506 None:intergenic 40.0%
AGGCTTTCACGATTTCTGTA+TGG - chr1.4:87830028-87830047 None:intergenic 40.0%
AGGTGATTAACAAGCTCATG+TGG + chr1.4:87831444-87831463 MS.gene90825:CDS 40.0%
AGTCATAGTGCCAATAACTC+CGG - chr1.4:87831582-87831601 None:intergenic 40.0%
CATTGTTAATTCCTTCCCTG+TGG - chr1.4:87831193-87831212 None:intergenic 40.0%
CCACAAATTGAAGCTACTCA+AGG - chr1.4:87829733-87829752 None:intergenic 40.0%
CCTTGAGTAGCTTCAATTTG+TGG + chr1.4:87829730-87829749 MS.gene90825:intron 40.0%
CGCATAAATTCGATCAACCT+CGG - chr1.4:87831711-87831730 None:intergenic 40.0%
CTAAGAGAACAAGATCCATG+AGG + chr1.4:87831618-87831637 MS.gene90825:CDS 40.0%
GAAGTACGTGAAGCAAGTAA+CGG + chr1.4:87828751-87828770 MS.gene90825:CDS 40.0%
GATTAACAAGCTCATGTGGT+TGG + chr1.4:87831448-87831467 MS.gene90825:CDS 40.0%
GCATTGCATATGGCTGTAAA+AGG + chr1.4:87830101-87830120 MS.gene90825:CDS 40.0%
GCTACTCAAGGTCTAACAAT+TGG - chr1.4:87829721-87829740 None:intergenic 40.0%
GGGTCATCTTGATGTTGTTA+AGG + chr1.4:87828988-87829007 MS.gene90825:CDS 40.0%
GGTGAATGAACTTCTGTCAA+AGG + chr1.4:87829935-87829954 MS.gene90825:CDS 40.0%
GTTGGAGGAGTGATAATATC+CGG + chr1.4:87831560-87831579 MS.gene90825:CDS 40.0%
TGACTAGCAGCAATATGCAA+AGG - chr1.4:87829073-87829092 None:intergenic 40.0%
TTCATTTGCAGCCATTGTTC+AGG + chr1.4:87829818-87829837 MS.gene90825:intron 40.0%
TTGCATATTGCTGCTAGTCA+AGG + chr1.4:87829073-87829092 MS.gene90825:CDS 40.0%
! ATTCTGGTTACAGTTGTTGG+AGG + chr1.4:87831545-87831564 MS.gene90825:CDS 40.0%
! GCAATTCTGGTTACAGTTGT+TGG + chr1.4:87831542-87831561 MS.gene90825:CDS 40.0%
! GCTTTTACGTTTATTGCAGG+TGG + chr1.4:87828572-87828591 MS.gene90825:intron 40.0%
! TCCGTTTTCCTGAGTTTGAA+AGG - chr1.4:87828712-87828731 None:intergenic 40.0%
!! CAGATAATGGGTACTTTGAG+TGG + chr1.4:87828860-87828879 MS.gene90825:CDS 40.0%
AACCAGGAAAAAGCGAGTAG+AGG + chr1.4:87830217-87830236 MS.gene90825:CDS 45.0%
AAGGACATCCTCTCTCGATA+TGG + chr1.4:87831020-87831039 MS.gene90825:CDS 45.0%
AAGGGACGAACTGAGGAAAA+CGG + chr1.4:87831073-87831092 MS.gene90825:CDS 45.0%
ACCTCCAATTTCAACCTTCC+AGG + chr1.4:87828466-87828485 MS.gene90825:CDS 45.0%
ACCTGGAAGGTTGAAATTGG+AGG - chr1.4:87828470-87828489 None:intergenic 45.0%
AGAAGAAGAACCAACCTGGA+AGG - chr1.4:87828483-87828502 None:intergenic 45.0%
AGATGGCGACGGAGATATTT+CGG - chr1.4:87828660-87828679 None:intergenic 45.0%
AGCAGAGAAAAGGGTAGTTG+AGG + chr1.4:87831424-87831443 MS.gene90825:CDS 45.0%
AGGACATCCTCTCTCGATAT+GGG + chr1.4:87831021-87831040 MS.gene90825:CDS 45.0%
AGGGCAAACTGCATTGCATA+TGG + chr1.4:87830091-87830110 MS.gene90825:CDS 45.0%
CATTTACGTTTGTGTCTGGC+AGG - chr1.4:87830926-87830945 None:intergenic 45.0%
CCAACCTGGAAGGTTGAAAT+TGG - chr1.4:87828473-87828492 None:intergenic 45.0%
CCAATTTCAACCTTCCAGGT+TGG + chr1.4:87828470-87828489 MS.gene90825:intron 45.0%
CTATATTCACCGTACCTGGT+GGG + chr1.4:87831267-87831286 MS.gene90825:CDS 45.0%
CTCTGAATGATGCCATGAGT+TGG - chr1.4:87831678-87831697 None:intergenic 45.0%
CTGCTTCTCTTTCTTCCTCA+TGG - chr1.4:87831636-87831655 None:intergenic 45.0%
CTTCATCTAGCAGCTCAAAG+AGG + chr1.4:87828794-87828813 MS.gene90825:CDS 45.0%
GAAAACGGATCGATCAAGCA+GGG + chr1.4:87828723-87828742 MS.gene90825:CDS 45.0%
GAAAGATGTTCACACACAGC+TGG + chr1.4:87831109-87831128 MS.gene90825:CDS 45.0%
GACGGAGATATTTCGGAAAG+TGG - chr1.4:87828653-87828672 None:intergenic 45.0%
GAGTTTGAAAGGACTAGAGC+CGG - chr1.4:87828701-87828720 None:intergenic 45.0%
GCTCTAGTCCTTTCAAACTC+AGG + chr1.4:87828701-87828720 MS.gene90825:CDS 45.0%
GCTGTGTTGCCAAATTTGTC+AGG - chr1.4:87830185-87830204 None:intergenic 45.0%
TAACGAGCTCAACCAACCAA+GGG + chr1.4:87831055-87831074 MS.gene90825:CDS 45.0%
TATATTCACCGTACCTGGTG+GGG + chr1.4:87831268-87831287 MS.gene90825:CDS 45.0%
TCTGATGACTCTTCAGAGAG+AGG - chr1.4:87830996-87831015 None:intergenic 45.0%
TGTTATAAGTGGAGTGGCGT+TGG - chr1.4:87829889-87829908 None:intergenic 45.0%
TTATAACAGCAGCGACGAGA+GGG + chr1.4:87829901-87829920 MS.gene90825:CDS 45.0%
TTCACGATTTCTGTATGGCC+CGG - chr1.4:87830023-87830042 None:intergenic 45.0%
TTCAGAGTTCTCCAATTCCG+AGG + chr1.4:87831691-87831710 MS.gene90825:CDS 45.0%
TTTGCATTTAGCTGCTCGTC+CGG + chr1.4:87830001-87830020 MS.gene90825:CDS 45.0%
!! CAATGTCAAGGGCTGTTTTG+TGG - chr1.4:87830962-87830981 None:intergenic 45.0%
!! TAACGATGATGGATCAGGAG+TGG + chr1.4:87831292-87831311 MS.gene90825:CDS 45.0%
!!! TACCTCTACTCGCTTTTTCC+TGG - chr1.4:87830222-87830241 None:intergenic 45.0%
!!! TTTTGTATTTTTTTTTTTTT+TGG + chr1.4:87829414-87829433 MS.gene90825:intron 5.0%
AAGAGCTGAGGAAACTCCAC+AGG + chr1.4:87831174-87831193 MS.gene90825:CDS 50.0%
ACCGACGACTATGTACGAAG+AGG - chr1.4:87831504-87831523 None:intergenic 50.0%
AGAAAGAGAAGCAGCTAGCC+AGG + chr1.4:87831642-87831661 MS.gene90825:CDS 50.0%
AGAGCTGAGGAAACTCCACA+GGG + chr1.4:87831175-87831194 MS.gene90825:CDS 50.0%
AGAGGCAATAAATGCCACCG+AGG - chr1.4:87831486-87831505 None:intergenic 50.0%
ATCGTTATCCCCACCAGGTA+CGG - chr1.4:87831279-87831298 None:intergenic 50.0%
CGCTGCTGTTATAAGTGGAG+TGG - chr1.4:87829895-87829914 None:intergenic 50.0%
CTAACGAGCTCAACCAACCA+AGG + chr1.4:87831054-87831073 MS.gene90825:CDS 50.0%
CTCGGAGGACTGACAAGAAA+GGG + chr1.4:87830072-87830091 MS.gene90825:CDS 50.0%
CTCGTCGCTGCTGTTATAAG+TGG - chr1.4:87829900-87829919 None:intergenic 50.0%
CTTATAACAGCAGCGACGAG+AGG + chr1.4:87829900-87829919 MS.gene90825:CDS 50.0%
CTTCGTACATAGTCGTCGGT+CGG + chr1.4:87831504-87831523 MS.gene90825:CDS 50.0%
GCAAAGACCCTCAATTGGCT+CGG + chr1.4:87830054-87830073 MS.gene90825:CDS 50.0%
GCAGCTCAAAGAGGTGATGT+TGG + chr1.4:87828803-87828822 MS.gene90825:CDS 50.0%
GCCTCTTCGTACATAGTCGT+CGG + chr1.4:87831500-87831519 MS.gene90825:CDS 50.0%
GCTATATTCACCGTACCTGG+TGG + chr1.4:87831266-87831285 MS.gene90825:CDS 50.0%
GCTCAGCAAAGACCCTCAAT+TGG + chr1.4:87830049-87830068 MS.gene90825:CDS 50.0%
GCTGCTAGTCAAGGACATCA+TGG + chr1.4:87829082-87829101 MS.gene90825:CDS 50.0%
GCTGCTATATTCACCGTACC+TGG + chr1.4:87831263-87831282 MS.gene90825:CDS 50.0%
GGAAAACGGATCGATCAAGC+AGG + chr1.4:87828722-87828741 MS.gene90825:CDS 50.0%
GGACATCCTCTCTCGATATG+GGG + chr1.4:87831022-87831041 MS.gene90825:CDS 50.0%
GGAGAAGTGGATCCAACTCA+TGG + chr1.4:87831663-87831682 MS.gene90825:CDS 50.0%
GTCAAAGGATGGCAGCTTGT+TGG + chr1.4:87829950-87829969 MS.gene90825:CDS 50.0%
GTGGAGTTTCCTCAGCTCTT+TGG - chr1.4:87831174-87831193 None:intergenic 50.0%
TAAGTGCCCCATATCGAGAG+AGG - chr1.4:87831031-87831050 None:intergenic 50.0%
TGGCAACACAGCATTGCATG+TGG + chr1.4:87830193-87830212 MS.gene90825:CDS 50.0%
TTGAGGGTCTTTGCTGAGCA+AGG - chr1.4:87830048-87830067 None:intergenic 50.0%
TTGCATTTAGCTGCTCGTCC+GGG + chr1.4:87830002-87830021 MS.gene90825:CDS 50.0%
! ATAAGTGGAGTGGCGTTGGA+TGG - chr1.4:87829885-87829904 None:intergenic 50.0%
! GTTGGCTTCTGTCTGTACCT+CGG + chr1.4:87831466-87831485 MS.gene90825:CDS 50.0%
! GTTTTCCTCAGTTCGTCCCT+TGG - chr1.4:87831074-87831093 None:intergenic 50.0%
! TCGGAAAGTGGGTTCTGTGT+TGG - chr1.4:87828641-87828660 None:intergenic 50.0%
! TGAGTTGGATCCACTTCTCC+TGG - chr1.4:87831663-87831682 None:intergenic 50.0%
!! GGGGATAACGATGATGGATC+AGG + chr1.4:87831287-87831306 MS.gene90825:CDS 50.0%
AAAAGGGCAGAGCTGTGACG+TGG + chr1.4:87830118-87830137 MS.gene90825:CDS 55.0%
AAGCAGCTAGCCAGGAGAAG+TGG + chr1.4:87831650-87831669 MS.gene90825:CDS 55.0%
ACCAACCAAGGGACGAACTG+AGG + chr1.4:87831066-87831085 MS.gene90825:CDS 55.0%
CACCACTGTCACCGAGTTTG+TGG - chr1.4:87831216-87831235 None:intergenic 55.0%
CAGCATTGCATGTGGCAACC+AGG + chr1.4:87830201-87830220 MS.gene90825:CDS 55.0%
CAGTCCTCCGAGCCAATTGA+GGG - chr1.4:87830064-87830083 None:intergenic 55.0%
CCATCATCGTTATCCCCACC+AGG - chr1.4:87831284-87831303 None:intergenic 55.0%
CCTGGTGGGGATAACGATGA+TGG + chr1.4:87831281-87831300 MS.gene90825:CDS 55.0%
CTGAGGAAACTCCACAGGGA+AGG + chr1.4:87831179-87831198 MS.gene90825:CDS 55.0%
GCTCGGAGGACTGACAAGAA+AGG + chr1.4:87830071-87830090 MS.gene90825:CDS 55.0%
TCAGTCCTCCGAGCCAATTG+AGG - chr1.4:87830065-87830084 None:intergenic 55.0%
TCCTCAGTTCGTCCCTTGGT+TGG - chr1.4:87831070-87831089 None:intergenic 55.0%
! CACAAACTCGGTGACAGTGG+TGG + chr1.4:87831214-87831233 MS.gene90825:CDS 55.0%
! TGCCACAAACTCGGTGACAG+TGG + chr1.4:87831211-87831230 MS.gene90825:CDS 55.0%
!! AAGACCCTCAATTGGCTCGG+AGG + chr1.4:87830057-87830076 MS.gene90825:CDS 55.0%
!! GAACGAGTGGGCTGCAATTC+TGG + chr1.4:87831529-87831548 MS.gene90825:CDS 55.0%
CGTACATAGTCGTCGGTCGG+AGG + chr1.4:87831507-87831526 MS.gene90825:CDS 60.0%
GGCTTCTGTCTGTACCTCGG+TGG + chr1.4:87831469-87831488 MS.gene90825:CDS 60.0%
CGTCGGTCGGAGGAACGAGT+GGG + chr1.4:87831517-87831536 MS.gene90825:CDS 65.0%
TCGTCGGTCGGAGGAACGAG+TGG + chr1.4:87831516-87831535 MS.gene90825:CDS 65.0%
! GACGAGAGGGCACGTCGAAG+TGG + chr1.4:87829914-87829933 MS.gene90825:CDS 65.0%
GCCATCTCCGTCGTCCGCGA+CGG + chr1.4:87828673-87828692 MS.gene90825:CDS 70.0%
GCGGACGACGGAGATGGCGA+CGG - chr1.4:87828671-87828690 None:intergenic 70.0%
GACTAGAGCCGGCGCCGTCG+CGG - chr1.4:87828690-87828709 None:intergenic 75.0%
GCCGTCGCGGACGACGGAGA+TGG - chr1.4:87828677-87828696 None:intergenic 75.0%
! TCCGTCGTCCGCGACGGCGC+CGG + chr1.4:87828679-87828698 MS.gene90825:CDS 80.0%
! GCCGGCGCCGTCGCGGACGA+CGG - chr1.4:87828683-87828702 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 87828463 87831736 87828463 ID=MS.gene90825
chr1.4 mRNA 87828463 87831736 87828463 ID=MS.gene90825.t1;Parent=MS.gene90825
chr1.4 exon 87828463 87828487 87828463 ID=MS.gene90825.t1.exon1;Parent=MS.gene90825.t1
chr1.4 CDS 87828463 87828487 87828463 ID=cds.MS.gene90825.t1;Parent=MS.gene90825.t1
chr1.4 exon 87828591 87829103 87828591 ID=MS.gene90825.t1.exon2;Parent=MS.gene90825.t1
chr1.4 CDS 87828591 87829103 87828591 ID=cds.MS.gene90825.t1;Parent=MS.gene90825.t1
chr1.4 exon 87829829 87830238 87829829 ID=MS.gene90825.t1.exon3;Parent=MS.gene90825.t1
chr1.4 CDS 87829829 87830238 87829829 ID=cds.MS.gene90825.t1;Parent=MS.gene90825.t1
chr1.4 exon 87830903 87831736 87830903 ID=MS.gene90825.t1.exon4;Parent=MS.gene90825.t1
chr1.4 CDS 87830903 87831736 87830903 ID=cds.MS.gene90825.t1;Parent=MS.gene90825.t1
Gene Sequence

>MS.gene90825

ATGACCTCCAATTTCAACCTTCCAGGTTGGTTCTTCTTCTATCTGCACCCCCATCTTTTTACTTCACTGTAAACTGTAAATTTTACAGTTTTTTTTTTTTTTTTACTACGCTTTTACGTTTATTGCAGGTGGAGCTCAAACTCAAAGAGATTCAGAAAAAGGAACGATGATGACACCAACACAGAACCCACTTTCCGAAATATCTCCGTCGCCATCTCCGTCGTCCGCGACGGCGCCGGCTCTAGTCCTTTCAAACTCAGGAAAACGGATCGATCAAGCAGGGAAGAAGAAGTACGTGAAGCAAGTAACGGGTCGTCACAACGACACAGAGCTTCATCTAGCAGCTCAAAGAGGTGATGTTGGTGCTGTGAGACAGATCCTTCTTGATATTGATTCTCAGATAATGGGTACTTTGAGTGGTGATGATGATGTTGATCTTAACGCTGAGATTGCTGAAGTTCGTGCTCTTGTTGTGAATGAAGAGAATGAACTTGGTGAAACTGCTTTGTTTACTGCTGCTGAAAAGGGTCATCTTGATGTTGTTAAGGAGTTGTTGAAACATTCAACTCTTCAAACTGTTTCTAAAAAGAATCGATCTGGTTTTGATCCTTTGCATATTGCTGCTAGTCAAGGACATCATGGTATGACTTCTTGTATTCAATGTCTTGTCAGATGTTCTGTTTTTATTACCTTTTTCCTTTGTTTTGATGTTGGGATTTTGGAAATTTCATTATTTTGCTTTTTGTAAAAATGGGTGAGAAAAATTTATTTTGAATGAATTGACTTTGGCTAAAATTGAGTTGAAGGTAAAACGATTTATGTTTGGGTACATTCATCTAAGCGAGTTGAACAATAAATTTGAGTTTAAAAATCAATTCTAGAATAAGAAGCTACAATTTCTAGCTTCAAGTAGAATCAGTTATGGAGACAAAATCAGGATGTTTGAGTGAGTTTTGTATTTTTTTTTTTTTTGGAACATATTCTTGGTTTCAACTTTAGTAGAAGAACACCAGAAGTATATCTGATTAAATTTGTAATTTATTAAGTTATGAGCTGACTATTGAGTATTTATCTTGCTTAAGGTATCCAATAAAGAAACTCAATTATGATGCTATTAATGGACTTTTTTTTAAGAAGCTATTAATGGAAATTTTAAGAGAAATGTTATGACACGAGTTTTAATATTATTAATCCGTAGTAGAGTTAATGCTATGTAGACAAGTCTGCCAAACATCAACGTTGTCTTATTTGGATTCCAATTGTTAGACCTTGAGTAGCTTCAATTTGTGGGTTATGGTGTTCTTGAAAATGTGAGTACTTTGCCTTCTGTTCTTTGTAGTAATCTGTTGTGAATTTTCATTTGCAGCCATTGTTCAGGTTTTACTAGATTATGACCCAAGCTTAAGCAAAACTATTGGTCCATCCAACGCCACTCCACTTATAACAGCAGCGACGAGAGGGCACGTCGAAGTGGTGAATGAACTTCTGTCAAAGGATGGCAGCTTGTTGGAAATTGCAAGATCCAATGGAAAAAATGCTTTGCATTTAGCTGCTCGTCCGGGCCATACAGAAATCGTGAAAGCCTTGCTCAGCAAAGACCCTCAATTGGCTCGGAGGACTGACAAGAAAGGGCAAACTGCATTGCATATGGCTGTAAAAGGGCAGAGCTGTGACGTGGTGAAATTGCTTCTTGATGCAGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGCAACACAGCATTGCATGTGGCAACCAGGAAAAAGCGAGTAGAGGTATGTAACATTAGCACAGCATTACAAGCAGTCAAGCACCATACAGTACATATAGTGATGAAGTAAAACAAATTAACTTACTCGAACAAATCGGGCTCACTTGACATAGCTAAATATGCCATATTTGTAGTAGTAGTATTAGTTATAGAATGATTAACAAGTCTCCAATATTGAAAACAGGTAGCTAATTATGCTACAAAAAATGCAAACGAGGCTGCTAATTTGTTATTATATTTTATATTCTCTGTCTCATATTATGTGTCTCATAATTCATTTGAATTTTTGTCTCAAATTATTTGTCATTTTATAATATCAATACAATATTTATTACTTTTTTCAAAAGTTACCTTTATTTATTTAAGTAGTTGCAAGTATAAGGTGGACAAATAATAAATGAAGTACAATGATATTTTAGTCTCAACATGTTATTTTGCTTTGAAAATTGGTATAAGTAAACCATTTTTTTAAGTAGTGTGCACATTACTAATGAAACATGTTATATGAGACAAGGGATGTAACTTCAATTTTGTCTAGAAGTTTTGGGCCTCTTGTTTTCTTTTAATTTTTATACATGAAAAACACTTGTTCCCCTAGTTACTTTTGAGCATGTCATTGTTCCTTGAATGAAAAATCTAATATTGTTGTTTCTCAATTTCTTGGACAGATAGTGAATGAGTTGTTACTCCTGCCAGACACAAACGTAAATGCATTAACACGAGACCACAAAACAGCCCTTGACATTGCTGAAAATCTTCCTCTCTCTGAAGAGTCATCAGATATAAAGGACATCCTCTCTCGATATGGGGCACTTAGAGCTAACGAGCTCAACCAACCAAGGGACGAACTGAGGAAAACGGTTACACAAATTAAGAAAGATGTTCACACACAGCTGGAACAAACCAAGAGAACCAACAAAAATGTCCACAATATATCCAAAGAGCTGAGGAAACTCCACAGGGAAGGAATTAACAATGCCACAAACTCGGTGACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACCGTACCTGGTGGGGATAACGATGATGGATCAGGAGTGGTAGCGAGTTATTCTGCTTTTAAAATTTTCTTCATATTCAATGCTATTGCGCTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCCTTGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTAGTTGAGGTGATTAACAAGCTCATGTGGTTGGCTTCTGTCTGTACCTCGGTGGCATTTATTGCCTCTTCGTACATAGTCGTCGGTCGGAGGAACGAGTGGGCTGCAATTCTGGTTACAGTTGTTGGAGGAGTGATAATATCCGGAGTTATTGGCACTATGACTTACTATGTAGTGAGGTCTAAGAGAACAAGATCCATGAGGAAGAAAGAGAAGCAGCTAGCCAGGAGAAGTGGATCCAACTCATGGCATCATTCAGAGTTCTCCAATTCCGAGGTTGATCGAATTTATGCGCTCTAA

Protein sequence

>MS.gene90825.t1

MTSNFNLPGGAQTQRDSEKGTMMTPTQNPLSEISPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDIDSQIMGTLSGDDDVDLNAEIAEVRALVVNEENELGETALFTAAEKGHLDVVKELLKHSTLQTVSKKNRSGFDPLHIAASQGHHAIVQVLLDYDPSLSKTIGPSNATPLITAATRGHVEVVNELLSKDGSLLEIARSNGKNALHLAARPGHTEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLLLPDTNVNALTRDHKTALDIAENLPLSEESSDIKDILSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNDDGSGVVASYSAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRNEWAAILVTVVGGVIISGVIGTMTYYVVRSKRTRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAL