Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056263.t1 | RHN82593.1 | 94 | 367 | 22 | 0 | 4 | 370 | 102 | 468 | 2.40E-197 | 698 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056263.t1 | Q8GWA9 | 51.7 | 362 | 166 | 4 | 4 | 365 | 152 | 504 | 9.5e-102 | 371.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056263.t1 | A0A396K3J9 | 94.0 | 367 | 22 | 0 | 4 | 370 | 102 | 468 | 1.7e-197 | 698.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056263 | MS.gene069593 | 0.801997 | 6.92E-49 | -1.69E-46 |
| MS.gene056263 | MS.gene34308 | 0.800047 | 1.73E-48 | -1.69E-46 |
| MS.gene056263 | MS.gene56518 | 0.821144 | 4.72E-53 | -1.69E-46 |
| MS.gene056263 | MS.gene58071 | 0.801469 | 8.87E-49 | -1.69E-46 |
| MS.gene056263 | MS.gene76149 | 0.809648 | 1.71E-50 | -1.69E-46 |
| MS.gene056263 | MS.gene86479 | 0.80575 | 1.15E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene73119 | MS.gene056263 | PPI |
| MS.gene035805 | MS.gene056263 | PPI |
| MS.gene72613 | MS.gene056263 | PPI |
| MS.gene93974 | MS.gene056263 | PPI |
| MS.gene064542 | MS.gene056263 | PPI |
| MS.gene022192 | MS.gene056263 | PPI |
| MS.gene042910 | MS.gene056263 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056263.t1 | MTR_1g113720 | 90.463 | 367 | 21 | 1 | 4 | 370 | 102 | 454 | 0.0 | 685 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056263.t1 | AT2G17033 | 51.657 | 362 | 166 | 4 | 4 | 365 | 117 | 469 | 1.00e-128 | 378 |
| MS.gene056263.t1 | AT2G17033 | 51.657 | 362 | 166 | 4 | 4 | 365 | 151 | 503 | 1.84e-128 | 378 |
| MS.gene056263.t1 | AT2G17033 | 51.657 | 362 | 166 | 4 | 4 | 365 | 152 | 504 | 1.88e-128 | 378 |
| MS.gene056263.t1 | AT2G17033 | 51.657 | 362 | 166 | 4 | 4 | 365 | 148 | 500 | 2.85e-128 | 377 |
Find 90 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCTGGGTTCAGCTTATT+TGG | 0.208986 | 1.3:+76838863 | MS.gene056263:CDS |
| AATATGATTCTTTCAAGTTT+TGG | 0.242120 | 1.3:+76838555 | MS.gene056263:CDS |
| GGATTCTAAAGAGGTGAAAT+TGG | 0.277238 | 1.3:+76838827 | MS.gene056263:CDS |
| TGAAGTAGCTTCGGAAATTA+AGG | 0.315472 | 1.3:-76838145 | None:intergenic |
| CTTACAAGGATGAGGAATTC+TGG | 0.337094 | 1.3:+76838612 | MS.gene056263:CDS |
| TGTTGTGGATTTGAATGATT+TGG | 0.343073 | 1.3:+76838698 | MS.gene056263:CDS |
| AAGGTAAGGCTGTCAAAATT+TGG | 0.346114 | 1.3:+76839096 | MS.gene056263:CDS |
| GTTGATGAAATGGAGAATAA+TGG | 0.350749 | 1.3:+76838507 | MS.gene056263:CDS |
| GCCGGTTTGAGAAGCGCGTT+TGG | 0.359029 | 1.3:-76838229 | None:intergenic |
| CTTATTTGGTTATGTTGCTT+TGG | 0.360164 | 1.3:+76838877 | MS.gene056263:CDS |
| AGTATGTGGAAATGGTTTCT+TGG | 0.378531 | 1.3:+76838589 | MS.gene056263:CDS |
| GGAAATTAAGGTCTGGGATT+CGG | 0.380524 | 1.3:-76838133 | None:intergenic |
| TTTGTATGGATATGGAAGAT+TGG | 0.382413 | 1.3:+76838458 | MS.gene056263:CDS |
| GCCTCGTGAGGCTGAGAATC+TGG | 0.382565 | 1.3:+76838362 | MS.gene056263:CDS |
| CGGTGTAGCGTTTGTGTTTG+TGG | 0.383943 | 1.3:-76838113 | None:intergenic |
| TTGATGAAATGGAGAATAAT+GGG | 0.391709 | 1.3:+76838508 | MS.gene056263:CDS |
| GCTGTCAAAATTTGGTTATG+TGG | 0.401088 | 1.3:+76839104 | MS.gene056263:CDS |
| ATGGGAAGCTACGGTGGTTA+AGG | 0.401506 | 1.3:+76838761 | MS.gene056263:CDS |
| TTGTATGGATATGGAAGATT+GGG | 0.404726 | 1.3:+76838459 | MS.gene056263:CDS |
| GAACAGAGTTGTTGATGAAA+TGG | 0.410686 | 1.3:+76838497 | MS.gene056263:CDS |
| TTTGGTTATGTTGCTTTGGT+TGG | 0.411930 | 1.3:+76838881 | MS.gene056263:CDS |
| TGAGGCTGAGAATCTGGTTC+GGG | 0.416550 | 1.3:+76838368 | MS.gene056263:CDS |
| AGCGTTTGTGTTTGTGGAGT+AGG | 0.421612 | 1.3:-76838107 | None:intergenic |
| TCACGAGGAGTATGTGGAAA+TGG | 0.423732 | 1.3:+76838581 | MS.gene056263:CDS |
| TTGAAGAGGAAGTGCGAAGA+AGG | 0.427652 | 1.3:-76838281 | None:intergenic |
| AGCTTCGGAAATTAAGGTCT+GGG | 0.429865 | 1.3:-76838139 | None:intergenic |
| GCGTTTGTGTTTGTGGAGTA+GGG | 0.442569 | 1.3:-76838106 | None:intergenic |
| TCTCTTCTATGCAAAACTCT+TGG | 0.446048 | 1.3:+76838197 | MS.gene056263:CDS |
| GTGAGGCTGAGAATCTGGTT+CGG | 0.450440 | 1.3:+76838367 | MS.gene056263:CDS |
| GGTTATGTTGCTTTGGTTGG+AGG | 0.453621 | 1.3:+76838884 | MS.gene056263:CDS |
| TAGCTTCGGAAATTAAGGTC+TGG | 0.456742 | 1.3:-76838140 | None:intergenic |
| CTGCTTTGTTGCCAAAGGTA+AGG | 0.456812 | 1.3:+76839082 | MS.gene056263:CDS |
| CTGAAATCACTGTGGTCTGT+GGG | 0.457071 | 1.3:+76838952 | MS.gene056263:CDS |
| TCCAAACGCGCTTCTCAAAC+CGG | 0.458542 | 1.3:+76838228 | MS.gene056263:CDS |
| CAACATTCCTCATTATCGTT+GGG | 0.462227 | 1.3:-76838680 | None:intergenic |
| GTGGAGTAGGGTGATTAAAT+CGG | 0.462337 | 1.3:-76838094 | None:intergenic |
| AAAGTCCACTCAGGATTGAT+AGG | 0.466016 | 1.3:+76839048 | MS.gene056263:CDS |
| TTAAATCGGCGATGATGGTT+GGG | 0.470625 | 1.3:-76838080 | None:intergenic |
| ATCACTGTGGTCTGTGGGGT+TGG | 0.474623 | 1.3:+76838957 | MS.gene056263:CDS |
| GGTGATTAAATCGGCGATGA+TGG | 0.475107 | 1.3:-76838085 | None:intergenic |
| TCTTTAAGCAATACTTTGAC+CGG | 0.476216 | 1.3:-76839008 | None:intergenic |
| GCTTATGAATCCATGGTTAG+TGG | 0.476513 | 1.3:+76838321 | MS.gene056263:CDS |
| ATTAAATCGGCGATGATGGT+TGG | 0.492033 | 1.3:-76838081 | None:intergenic |
| AAATGGTTTCTTGGCTTACA+AGG | 0.492833 | 1.3:+76838598 | MS.gene056263:CDS |
| AGAGTTGTTGAATGTGTGTA+TGG | 0.492964 | 1.3:+76838734 | MS.gene056263:CDS |
| CGTTGGGCAAGAATTTGAAA+CGG | 0.501944 | 1.3:-76838664 | None:intergenic |
| TTATAAGTTCTAACAGAAAA+CGG | 0.505009 | 1.3:-76838639 | None:intergenic |
| ACAACATTCCTCATTATCGT+TGG | 0.508259 | 1.3:-76838681 | None:intergenic |
| GGATTTGCATGGATTTCACC+TGG | 0.508564 | 1.3:+76838848 | MS.gene056263:CDS |
| AAATTTGGTTATGTGGATTG+AGG | 0.508615 | 1.3:+76839111 | MS.gene056263:CDS |
| TGGAATTCACGAGGAGTATG+TGG | 0.512841 | 1.3:+76838575 | MS.gene056263:CDS |
| TTTCTTGGCTTACAAGGATG+AGG | 0.513035 | 1.3:+76838604 | MS.gene056263:CDS |
| AAGTGCGAAGAAGGTTATTG+AGG | 0.514865 | 1.3:-76838272 | None:intergenic |
| TGAATGTGTGTATGGAAGGA+TGG | 0.520905 | 1.3:+76838742 | MS.gene056263:CDS |
| TTTAAACAAACAGATGGTGG+TGG | 0.536003 | 1.3:+76838393 | MS.gene056263:CDS |
| GCTGAAATCACTGTGGTCTG+TGG | 0.537614 | 1.3:+76838951 | MS.gene056263:CDS |
| TTTCGATGAGGTGATGGTGT+GGG | 0.539150 | 1.3:+76838806 | MS.gene056263:CDS |
| ATTCTTGCCCAACGATAATG+AGG | 0.542535 | 1.3:+76838673 | MS.gene056263:CDS |
| GAGGTGAAATTGGATTTGCA+TGG | 0.550734 | 1.3:+76838837 | MS.gene056263:CDS |
| CGGGAATTTAAACAAACAGA+TGG | 0.561502 | 1.3:+76838387 | MS.gene056263:CDS |
| GCGTTTGACGTAAATTGAAG+AGG | 0.567328 | 1.3:-76838295 | None:intergenic |
| TTGTTGAATGTGTGTATGGA+AGG | 0.568777 | 1.3:+76838738 | MS.gene056263:CDS |
| GATTTGCATGGATTTCACCT+GGG | 0.577909 | 1.3:+76838849 | MS.gene056263:CDS |
| ACGCAGAGCTTATGAATCCA+TGG | 0.582181 | 1.3:+76838314 | MS.gene056263:CDS |
| CAGACCACAGTGATTTCAGC+AGG | 0.584643 | 1.3:-76838948 | None:intergenic |
| AACGATAATGAGGAATGTTG+TGG | 0.586263 | 1.3:+76838683 | MS.gene056263:CDS |
| GGTTGGAGGAGATGCAGAAG+AGG | 0.586274 | 1.3:+76838898 | MS.gene056263:CDS |
| AGAATAAGCAAAATCAAAGC+CGG | 0.591612 | 1.3:-76838247 | None:intergenic |
| TGCACACAATCCACTAACCA+TGG | 0.593701 | 1.3:-76838331 | None:intergenic |
| ACTGGCTGCTTTGTTGCCAA+AGG | 0.597676 | 1.3:+76839077 | MS.gene056263:CDS |
| TTAAACAAACAGATGGTGGT+GGG | 0.600043 | 1.3:+76838394 | MS.gene056263:CDS |
| GACTTGAATTCAAAAGCAGA+AGG | 0.600743 | 1.3:-76838432 | None:intergenic |
| GAATGTGTGTATGGAAGGAT+GGG | 0.610715 | 1.3:+76838743 | MS.gene056263:CDS |
| GCGAATCACAATGGTACACA+TGG | 0.610730 | 1.3:+76838055 | MS.gene056263:CDS |
| CAATGTGAGAGGAGAATCGC+CGG | 0.620006 | 1.3:+76838989 | MS.gene056263:CDS |
| GAATTTAAACAAACAGATGG+TGG | 0.622742 | 1.3:+76838390 | MS.gene056263:CDS |
| TGAAGATGAAAAGTCCACTC+AGG | 0.630228 | 1.3:+76839039 | MS.gene056263:CDS |
| ACCAGATTCTCAGCCTCACG+AGG | 0.633510 | 1.3:-76838363 | None:intergenic |
| TATGGAAGGATGGGAAGCTA+CGG | 0.639377 | 1.3:+76838752 | MS.gene056263:CDS |
| GATGGTGTGGGATTCTAAAG+AGG | 0.643782 | 1.3:+76838818 | MS.gene056263:CDS |
| GGTTAGTGGATTGTGTGCAA+TGG | 0.645853 | 1.3:+76838335 | MS.gene056263:CDS |
| TGAAATCACTGTGGTCTGTG+GGG | 0.648087 | 1.3:+76838953 | MS.gene056263:CDS |
| GGAAGGATGGGAAGCTACGG+TGG | 0.648287 | 1.3:+76838755 | MS.gene056263:CDS |
| TAAGAATAAGCGAATCACAA+TGG | 0.660243 | 1.3:+76838046 | MS.gene056263:CDS |
| TTCTTCCTATCAATCCTGAG+TGG | 0.663898 | 1.3:-76839053 | None:intergenic |
| GGAAAGCATAGCAATGTGAG+AGG | 0.667903 | 1.3:+76838978 | MS.gene056263:CDS |
| AGGATTGATAGGAAGAACAC+TGG | 0.687654 | 1.3:+76839059 | MS.gene056263:CDS |
| TGCAATGGATAAGCCTCGTG+AGG | 0.694549 | 1.3:+76838350 | MS.gene056263:CDS |
| TAACCAAATAAGCTGAACCC+AGG | 0.706791 | 1.3:-76838866 | None:intergenic |
| GATTCCTGCTGAAATCACTG+TGG | 0.811897 | 1.3:+76838944 | MS.gene056263:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAATAAAATTCACAA+CGG | + | chr1.3:76837427-76837446 | MS.gene056263:intron | 10.0% |
| !!! | AAATGTTAATGTTATTTTTT+AGG | - | chr1.3:76836720-76836739 | None:intergenic | 10.0% |
| !!! | TTATTTTCAAAAATGTTTAT+GGG | - | chr1.3:76837555-76837574 | None:intergenic | 10.0% |
| !!! | TTTATTTTCAAAAATGTTTA+TGG | - | chr1.3:76837556-76837575 | None:intergenic | 10.0% |
| !! | TTGTAAGTTATTAATTTAAG+AGG | - | chr1.3:76836521-76836540 | None:intergenic | 15.0% |
| !!! | TATTTTCAAAAATGTTTATG+GGG | - | chr1.3:76837554-76837573 | None:intergenic | 15.0% |
| !!! | TTTTTGAGAATATGAAAAAT+TGG | - | chr1.3:76837346-76837365 | None:intergenic | 15.0% |
| !! | TCAAACATATCAAATAAAAC+TGG | - | chr1.3:76837387-76837406 | None:intergenic | 20.0% |
| !! | TTACTTATATCAGAAAAAGA+AGG | + | chr1.3:76837632-76837651 | MS.gene056263:intron | 20.0% |
| !! | TTATTCTTTAATCCAAAACA+CGG | - | chr1.3:76837525-76837544 | None:intergenic | 20.0% |
| !!! | AAATGTAATTTTGATACAAG+CGG | - | chr1.3:76836496-76836515 | None:intergenic | 20.0% |
| !!! | AATATGATTCTTTCAAGTTT+TGG | + | chr1.3:76838555-76838574 | MS.gene056263:CDS | 20.0% |
| !!! | ATTTTCAAAAATGTTTATGG+GGG | - | chr1.3:76837553-76837572 | None:intergenic | 20.0% |
| !!! | GTTTTTCTTCTTCTTTTAAA+CGG | + | chr1.3:76836594-76836613 | MS.gene056263:intron | 20.0% |
| !!! | TTATAAGTTCTAACAGAAAA+CGG | - | chr1.3:76838642-76838661 | None:intergenic | 20.0% |
| ! | AAAAAAGTTATGTTGCTGAA+AGG | + | chr1.3:76836751-76836770 | MS.gene056263:intron | 25.0% |
| ! | AAATCAGAAGGAAAAAAACA+AGG | + | chr1.3:76837250-76837269 | MS.gene056263:intron | 25.0% |
| ! | AATACCAACAATTGCTATAT+TGG | - | chr1.3:76836976-76836995 | None:intergenic | 25.0% |
| ! | GATAAAAGTTCATGTTAAGA+TGG | + | chr1.3:76836830-76836849 | MS.gene056263:intron | 25.0% |
| ! | TAAAATTCACAACGGTTAAA+AGG | + | chr1.3:76837435-76837454 | MS.gene056263:intron | 25.0% |
| ! | TTGATGAAATGGAGAATAAT+GGG | + | chr1.3:76838508-76838527 | MS.gene056263:CDS | 25.0% |
| !! | AAGTCTATTTTGTATGGATA+TGG | + | chr1.3:76838450-76838469 | MS.gene056263:CDS | 25.0% |
| !! | AATCAGGTTTTTCATTGAAT+CGG | + | chr1.3:76837042-76837061 | MS.gene056263:intron | 25.0% |
| !! | CAATAGAAAATGTGGTTTTT+GGG | + | chr1.3:76837193-76837212 | MS.gene056263:intron | 25.0% |
| !! | GAAGAAGAAAAACTTGTTTA+TGG | - | chr1.3:76836587-76836606 | None:intergenic | 25.0% |
| !! | GAATTCAAGTCTATTTTGTA+TGG | + | chr1.3:76838444-76838463 | MS.gene056263:CDS | 25.0% |
| !! | TACTTGTCCTAATTTTCAAT+GGG | - | chr1.3:76836909-76836928 | None:intergenic | 25.0% |
| !! | TCAATAGAAAATGTGGTTTT+TGG | + | chr1.3:76837192-76837211 | MS.gene056263:intron | 25.0% |
| !! | TTTTAAACGGTACATTATTG+AGG | + | chr1.3:76836607-76836626 | MS.gene056263:intron | 25.0% |
| !! | TTTTCAAAAATGTTTATGGG+GGG | - | chr1.3:76837552-76837571 | None:intergenic | 25.0% |
| AAATGAGATGAGGGTAATTT+GGG | - | chr1.3:76837981-76838000 | None:intergenic | 30.0% | |
| AACTTTCAGAGAAAATCAGA+AGG | + | chr1.3:76837238-76837257 | MS.gene056263:intron | 30.0% | |
| AGAATAAGCAAAATCAAAGC+CGG | - | chr1.3:76838250-76838269 | None:intergenic | 30.0% | |
| ATTGATATGCACAAGAAATC+AGG | + | chr1.3:76837026-76837045 | MS.gene056263:intron | 30.0% | |
| GAAAAAACATTAGAGTTGAG+AGG | + | chr1.3:76837654-76837673 | MS.gene056263:intron | 30.0% | |
| GAAAATTAGGACAAGTACAA+GGG | + | chr1.3:76836912-76836931 | MS.gene056263:intron | 30.0% | |
| GAATTTAAACAAACAGATGG+TGG | + | chr1.3:76838390-76838409 | MS.gene056263:CDS | 30.0% | |
| GAGATTATGAAATGAGATGA+GGG | - | chr1.3:76837990-76838009 | None:intergenic | 30.0% | |
| GTCTCATGAGTAATTTAGTA+AGG | - | chr1.3:76837079-76837098 | None:intergenic | 30.0% | |
| TAACAATGACCAAAAACACA+AGG | - | chr1.3:76837155-76837174 | None:intergenic | 30.0% | |
| TAAGAATAAGCGAATCACAA+TGG | + | chr1.3:76838046-76838065 | MS.gene056263:CDS | 30.0% | |
| TCATGAGTAATTTAGTAAGG+CGG | - | chr1.3:76837076-76837095 | None:intergenic | 30.0% | |
| TCTTTAAGCAATACTTTGAC+CGG | - | chr1.3:76839011-76839030 | None:intergenic | 30.0% | |
| TGAAAATTAGGACAAGTACA+AGG | + | chr1.3:76836911-76836930 | MS.gene056263:intron | 30.0% | |
| TGAACTAAGAGATAAGAAGT+TGG | + | chr1.3:76836653-76836672 | MS.gene056263:intron | 30.0% | |
| TGAGGTTAGAATGATTACTA+CGG | - | chr1.3:76837131-76837150 | None:intergenic | 30.0% | |
| TGTTGTGGATTTGAATGATT+TGG | + | chr1.3:76838698-76838717 | MS.gene056263:CDS | 30.0% | |
| TTGTATGGATATGGAAGATT+GGG | + | chr1.3:76838459-76838478 | MS.gene056263:CDS | 30.0% | |
| TTTGTATGGATATGGAAGAT+TGG | + | chr1.3:76838458-76838477 | MS.gene056263:CDS | 30.0% | |
| ! | AAATTTGGTTATGTGGATTG+AGG | + | chr1.3:76839111-76839130 | MS.gene056263:CDS | 30.0% |
| ! | AACAAATTCAAACCGTGTTT+TGG | + | chr1.3:76837510-76837529 | MS.gene056263:intron | 30.0% |
| ! | ACGAATGAGATTTTCAGTAT+TGG | - | chr1.3:76837837-76837856 | None:intergenic | 30.0% |
| ! | ACTTGTCCTAATTTTCAATG+GGG | - | chr1.3:76836908-76836927 | None:intergenic | 30.0% |
| ! | ATAGAACTTTGGATTTTGAG+TGG | - | chr1.3:76837315-76837334 | None:intergenic | 30.0% |
| ! | ATCAGGTTTTTCATTGAATC+GGG | + | chr1.3:76837043-76837062 | MS.gene056263:intron | 30.0% |
| ! | CTTATTTGGTTATGTTGCTT+TGG | + | chr1.3:76838877-76838896 | MS.gene056263:CDS | 30.0% |
| ! | GTACTTGTCCTAATTTTCAA+TGG | - | chr1.3:76836910-76836929 | None:intergenic | 30.0% |
| ! | GTTGATGAAATGGAGAATAA+TGG | + | chr1.3:76838507-76838526 | MS.gene056263:CDS | 30.0% |
| ! | TTTTCACCCCATTGAAAATT+AGG | + | chr1.3:76836899-76836918 | MS.gene056263:intron | 30.0% |
| !! | CTGATTTTCTCTGAAAGTTT+CGG | - | chr1.3:76837237-76837256 | None:intergenic | 30.0% |
| !!! | ATTTTCAGTATTGGTGTTTG+TGG | - | chr1.3:76837828-76837847 | None:intergenic | 30.0% |
| !!! | GTTTTTTTTAAGACGAAGCT+GGG | - | chr1.3:76837744-76837763 | None:intergenic | 30.0% |
| !!! | TGTTTTTTTTAAGACGAAGC+TGG | - | chr1.3:76837745-76837764 | None:intergenic | 30.0% |
| AAACTAATCGAGTGCAAGAT+TGG | + | chr1.3:76836867-76836886 | MS.gene056263:intron | 35.0% | |
| AAATGGTTTCTTGGCTTACA+AGG | + | chr1.3:76838598-76838617 | MS.gene056263:CDS | 35.0% | |
| AACGATAATGAGGAATGTTG+TGG | + | chr1.3:76838683-76838702 | MS.gene056263:CDS | 35.0% | |
| AAGGTAAGGCTGTCAAAATT+TGG | + | chr1.3:76839096-76839115 | MS.gene056263:CDS | 35.0% | |
| AAGTTCATGTTAAGATGGAG+CGG | + | chr1.3:76836835-76836854 | MS.gene056263:intron | 35.0% | |
| AATGAGATGAGGGTAATTTG+GGG | - | chr1.3:76837980-76837999 | None:intergenic | 35.0% | |
| ACAACATTCCTCATTATCGT+TGG | - | chr1.3:76838684-76838703 | None:intergenic | 35.0% | |
| AGAGTTGTTGAATGTGTGTA+TGG | + | chr1.3:76838734-76838753 | MS.gene056263:CDS | 35.0% | |
| AGTATGTGGAAATGGTTTCT+TGG | + | chr1.3:76838589-76838608 | MS.gene056263:CDS | 35.0% | |
| AGTTCAAAGCAAGATGAAAG+AGG | + | chr1.3:76836684-76836703 | MS.gene056263:intron | 35.0% | |
| CAACATTCCTCATTATCGTT+GGG | - | chr1.3:76838683-76838702 | None:intergenic | 35.0% | |
| CATGCCAATATAGCAATTGT+TGG | + | chr1.3:76836969-76836988 | MS.gene056263:intron | 35.0% | |
| CCATGTCTCAATAGAAAATG+TGG | + | chr1.3:76837185-76837204 | MS.gene056263:intron | 35.0% | |
| CGGGAATTTAAACAAACAGA+TGG | + | chr1.3:76838387-76838406 | MS.gene056263:CDS | 35.0% | |
| GAAATGAGATGAGGGTAATT+TGG | - | chr1.3:76837982-76838001 | None:intergenic | 35.0% | |
| GACTTGAATTCAAAAGCAGA+AGG | - | chr1.3:76838435-76838454 | None:intergenic | 35.0% | |
| GAGAAAAGAGTTAACTTACG+GGG | - | chr1.3:76837958-76837977 | None:intergenic | 35.0% | |
| GCTGTCAAAATTTGGTTATG+TGG | + | chr1.3:76839104-76839123 | MS.gene056263:CDS | 35.0% | |
| GGAGAAAAGAGTTAACTTAC+GGG | - | chr1.3:76837959-76837978 | None:intergenic | 35.0% | |
| GGAGATTATGAAATGAGATG+AGG | - | chr1.3:76837991-76838010 | None:intergenic | 35.0% | |
| GGGAGAAAAGAGTTAACTTA+CGG | - | chr1.3:76837960-76837979 | None:intergenic | 35.0% | |
| TAAACGGTACATTATTGAGG+TGG | + | chr1.3:76836610-76836629 | MS.gene056263:intron | 35.0% | |
| TATTTGACCGACAAAACAAG+CGG | + | chr1.3:76836992-76837011 | MS.gene056263:intron | 35.0% | |
| TCTCTTCTATGCAAAACTCT+TGG | + | chr1.3:76838197-76838216 | MS.gene056263:CDS | 35.0% | |
| TGAAGTAGCTTCGGAAATTA+AGG | - | chr1.3:76838148-76838167 | None:intergenic | 35.0% | |
| TGATTACTACGGTCCTTAAA+TGG | - | chr1.3:76837120-76837139 | None:intergenic | 35.0% | |
| TGGTTGAAACGATAGAACTT+TGG | - | chr1.3:76837326-76837345 | None:intergenic | 35.0% | |
| TTAAATGGATAGGGTGGAAA+AGG | - | chr1.3:76837105-76837124 | None:intergenic | 35.0% | |
| TTGTTGAATGTGTGTATGGA+AGG | + | chr1.3:76838738-76838757 | MS.gene056263:CDS | 35.0% | |
| TTTCTTGTGCATATCAATCC+TGG | - | chr1.3:76837024-76837043 | None:intergenic | 35.0% | |
| ! | CCACATTTTCTATTGAGACA+TGG | - | chr1.3:76837188-76837207 | None:intergenic | 35.0% |
| ! | GAACAGAGTTGTTGATGAAA+TGG | + | chr1.3:76838497-76838516 | MS.gene056263:CDS | 35.0% |
| ! | GGATTCTAAAGAGGTGAAAT+TGG | + | chr1.3:76838827-76838846 | MS.gene056263:CDS | 35.0% |
| ! | GTACATTATTGAGGTGGATT+GGG | + | chr1.3:76836616-76836635 | MS.gene056263:intron | 35.0% |
| ! | GTGTAATGTGATTTTCGATG+AGG | + | chr1.3:76838794-76838813 | MS.gene056263:CDS | 35.0% |
| ! | TAACCTCATCCTTGTGTTTT+TGG | + | chr1.3:76837143-76837162 | MS.gene056263:intron | 35.0% |
| ! | TTAAACAAACAGATGGTGGT+GGG | + | chr1.3:76838394-76838413 | MS.gene056263:CDS | 35.0% |
| ! | TTTAAACAAACAGATGGTGG+TGG | + | chr1.3:76838393-76838412 | MS.gene056263:CDS | 35.0% |
| ! | TTTTCCACCCTATCCATTTA+AGG | + | chr1.3:76837104-76837123 | MS.gene056263:intron | 35.0% |
| !! | AAGAAATGGAAGGGTTAGTT+TGG | - | chr1.3:76838012-76838031 | None:intergenic | 35.0% |
| !! | AATTTTGACAGCCTTACCTT+TGG | - | chr1.3:76839096-76839115 | None:intergenic | 35.0% |
| !! | TTTGGTTATGTTGCTTTGGT+TGG | + | chr1.3:76838881-76838900 | MS.gene056263:CDS | 35.0% |
| !!! | GTTGAGTTTTGAAGTAGCTT+CGG | - | chr1.3:76838157-76838176 | None:intergenic | 35.0% |
| !!! | TTCAAGTTTTGGAATTCACG+AGG | + | chr1.3:76838566-76838585 | MS.gene056263:CDS | 35.0% |
| AAAAGAGTTAACTTACGGGG+AGG | - | chr1.3:76837955-76837974 | None:intergenic | 40.0% | |
| AAAGAGTTAACTTACGGGGA+GGG | - | chr1.3:76837954-76837973 | None:intergenic | 40.0% | |
| AAAGTCCACTCAGGATTGAT+AGG | + | chr1.3:76839048-76839067 | MS.gene056263:CDS | 40.0% | |
| AAGTGCGAAGAAGGTTATTG+AGG | - | chr1.3:76838275-76838294 | None:intergenic | 40.0% | |
| ACAAGTACAAGGGATGATGA+AGG | + | chr1.3:76836922-76836941 | MS.gene056263:intron | 40.0% | |
| ACTACGGTCCTTAAATGGAT+AGG | - | chr1.3:76837115-76837134 | None:intergenic | 40.0% | |
| AGCTGCAACAAGAAATGGAA+GGG | - | chr1.3:76838021-76838040 | None:intergenic | 40.0% | |
| AGCTTCGGAAATTAAGGTCT+GGG | - | chr1.3:76838142-76838161 | None:intergenic | 40.0% | |
| AGGATTGATAGGAAGAACAC+TGG | + | chr1.3:76839059-76839078 | MS.gene056263:CDS | 40.0% | |
| AGTTCATGTTAAGATGGAGC+GGG | + | chr1.3:76836836-76836855 | MS.gene056263:intron | 40.0% | |
| ATTCTTGCCCAACGATAATG+AGG | + | chr1.3:76838673-76838692 | MS.gene056263:CDS | 40.0% | |
| ATTTGACCGACAAAACAAGC+GGG | + | chr1.3:76836993-76837012 | MS.gene056263:intron | 40.0% | |
| CGTTGGGCAAGAATTTGAAA+CGG | - | chr1.3:76838667-76838686 | None:intergenic | 40.0% | |
| CTACGGTCCTTAAATGGATA+GGG | - | chr1.3:76837114-76837133 | None:intergenic | 40.0% | |
| CTTACAAGGATGAGGAATTC+TGG | + | chr1.3:76838612-76838631 | MS.gene056263:CDS | 40.0% | |
| GAATGTGTGTATGGAAGGAT+GGG | + | chr1.3:76838743-76838762 | MS.gene056263:CDS | 40.0% | |
| GAGGTGAAATTGGATTTGCA+TGG | + | chr1.3:76838837-76838856 | MS.gene056263:CDS | 40.0% | |
| GATTTGCATGGATTTCACCT+GGG | + | chr1.3:76838849-76838868 | MS.gene056263:CDS | 40.0% | |
| GCGTTTGACGTAAATTGAAG+AGG | - | chr1.3:76838298-76838317 | None:intergenic | 40.0% | |
| GCTTATGAATCCATGGTTAG+TGG | + | chr1.3:76838321-76838340 | MS.gene056263:CDS | 40.0% | |
| GGTACATTATTGAGGTGGAT+TGG | + | chr1.3:76836615-76836634 | MS.gene056263:intron | 40.0% | |
| GTGGAGTAGGGTGATTAAAT+CGG | - | chr1.3:76838097-76838116 | None:intergenic | 40.0% | |
| GTTGCACTCTAACGAAACAA+GGG | + | chr1.3:76837777-76837796 | MS.gene056263:intron | 40.0% | |
| TAACCAAATAAGCTGAACCC+AGG | - | chr1.3:76838869-76838888 | None:intergenic | 40.0% | |
| TAGCTTCGGAAATTAAGGTC+TGG | - | chr1.3:76838143-76838162 | None:intergenic | 40.0% | |
| TGAAGATGAAAAGTCCACTC+AGG | + | chr1.3:76839039-76839058 | MS.gene056263:CDS | 40.0% | |
| TGAATGTGTGTATGGAAGGA+TGG | + | chr1.3:76838742-76838761 | MS.gene056263:CDS | 40.0% | |
| TGACCAAAAACACAAGGATG+AGG | - | chr1.3:76837149-76837168 | None:intergenic | 40.0% | |
| TGTAGAGCTGCAACAAGAAA+TGG | - | chr1.3:76838026-76838045 | None:intergenic | 40.0% | |
| TTCTTCCTATCAATCCTGAG+TGG | - | chr1.3:76839056-76839075 | None:intergenic | 40.0% | |
| TTTCGTTAGAGTGCAACGAA+TGG | - | chr1.3:76837774-76837793 | None:intergenic | 40.0% | |
| TTTCTTGGCTTACAAGGATG+AGG | + | chr1.3:76838604-76838623 | MS.gene056263:CDS | 40.0% | |
| ! | AGGTTTTTCATTGAATCGGG+TGG | + | chr1.3:76837046-76837065 | MS.gene056263:intron | 40.0% |
| ! | ATTAAATCGGCGATGATGGT+TGG | - | chr1.3:76838084-76838103 | None:intergenic | 40.0% |
| ! | GGAAATTAAGGTCTGGGATT+CGG | - | chr1.3:76838136-76838155 | None:intergenic | 40.0% |
| ! | GGTTTTTCATTGAATCGGGT+GGG | + | chr1.3:76837047-76837066 | MS.gene056263:intron | 40.0% |
| ! | TGTGATTTTCGATGAGGTGA+TGG | + | chr1.3:76838800-76838819 | MS.gene056263:CDS | 40.0% |
| ! | TTAAATCGGCGATGATGGTT+GGG | - | chr1.3:76838083-76838102 | None:intergenic | 40.0% |
| !! | TTGTGGTTGAGAGTTTTGTG+AGG | - | chr1.3:76837811-76837830 | None:intergenic | 40.0% |
| !!! | TTTTAAGACGAAGCTGGGTT+TGG | - | chr1.3:76837739-76837758 | None:intergenic | 40.0% |
| ACGCAGAGCTTATGAATCCA+TGG | + | chr1.3:76838314-76838333 | MS.gene056263:CDS | 45.0% | |
| AGCGTTTGTGTTTGTGGAGT+AGG | - | chr1.3:76838110-76838129 | None:intergenic | 45.0% | |
| AGTGAGAGTGGAGAGTAGTA+CGG | - | chr1.3:76837885-76837904 | None:intergenic | 45.0% | |
| AGTGGAGAGTAGTACGGATT+TGG | - | chr1.3:76837879-76837898 | None:intergenic | 45.0% | |
| CGTTGCACTCTAACGAAACA+AGG | + | chr1.3:76837776-76837795 | MS.gene056263:intron | 45.0% | |
| CTGAAATCACTGTGGTCTGT+GGG | + | chr1.3:76838952-76838971 | MS.gene056263:CDS | 45.0% | |
| GAGCTGCAACAAGAAATGGA+AGG | - | chr1.3:76838022-76838041 | None:intergenic | 45.0% | |
| GATTCCTGCTGAAATCACTG+TGG | + | chr1.3:76838944-76838963 | MS.gene056263:CDS | 45.0% | |
| GCGAATCACAATGGTACACA+TGG | + | chr1.3:76838055-76838074 | MS.gene056263:CDS | 45.0% | |
| GCGTTTGTGTTTGTGGAGTA+GGG | - | chr1.3:76838109-76838128 | None:intergenic | 45.0% | |
| GCTATATTGGCATGCTAGCA+GGG | - | chr1.3:76836963-76836982 | None:intergenic | 45.0% | |
| GGATTTGCATGGATTTCACC+TGG | + | chr1.3:76838848-76838867 | MS.gene056263:CDS | 45.0% | |
| GGTGATTAAATCGGCGATGA+TGG | - | chr1.3:76838088-76838107 | None:intergenic | 45.0% | |
| GTGGAGAGTAGTACGGATTT+GGG | - | chr1.3:76837878-76837897 | None:intergenic | 45.0% | |
| TATGGAAGGATGGGAAGCTA+CGG | + | chr1.3:76838752-76838771 | MS.gene056263:CDS | 45.0% | |
| TCACCTGGGTTCAGCTTATT+TGG | + | chr1.3:76838863-76838882 | MS.gene056263:CDS | 45.0% | |
| TGAAATCACTGTGGTCTGTG+GGG | + | chr1.3:76838953-76838972 | MS.gene056263:CDS | 45.0% | |
| TGCACACAATCCACTAACCA+TGG | - | chr1.3:76838334-76838353 | None:intergenic | 45.0% | |
| TGCTATATTGGCATGCTAGC+AGG | - | chr1.3:76836964-76836983 | None:intergenic | 45.0% | |
| ! | CTGCTTTGTTGCCAAAGGTA+AGG | + | chr1.3:76839082-76839101 | MS.gene056263:CDS | 45.0% |
| ! | GATGGTGTGGGATTCTAAAG+AGG | + | chr1.3:76838818-76838837 | MS.gene056263:CDS | 45.0% |
| ! | GGAAAGCATAGCAATGTGAG+AGG | + | chr1.3:76838978-76838997 | MS.gene056263:CDS | 45.0% |
| ! | TCACGAGGAGTATGTGGAAA+TGG | + | chr1.3:76838581-76838600 | MS.gene056263:CDS | 45.0% |
| ! | TGGAATTCACGAGGAGTATG+TGG | + | chr1.3:76838575-76838594 | MS.gene056263:CDS | 45.0% |
| ! | TTGAAGAGGAAGTGCGAAGA+AGG | - | chr1.3:76838284-76838303 | None:intergenic | 45.0% |
| ! | TTTCGATGAGGTGATGGTGT+GGG | + | chr1.3:76838806-76838825 | MS.gene056263:CDS | 45.0% |
| !! | GGTTAGTGGATTGTGTGCAA+TGG | + | chr1.3:76838335-76838354 | MS.gene056263:CDS | 45.0% |
| !! | GGTTATGTTGCTTTGGTTGG+AGG | + | chr1.3:76838884-76838903 | MS.gene056263:CDS | 45.0% |
| !! | TTTTCGATGAGGTGATGGTG+TGG | + | chr1.3:76838805-76838824 | MS.gene056263:CDS | 45.0% |
| ATATTGGCATGCTAGCAGGG+AGG | - | chr1.3:76836960-76836979 | None:intergenic | 50.0% | |
| ATGGGAAGCTACGGTGGTTA+AGG | + | chr1.3:76838761-76838780 | MS.gene056263:CDS | 50.0% | |
| CAATGTGAGAGGAGAATCGC+CGG | + | chr1.3:76838989-76839008 | MS.gene056263:CDS | 50.0% | |
| CAGACCACAGTGATTTCAGC+AGG | - | chr1.3:76838951-76838970 | None:intergenic | 50.0% | |
| CGGTCCTTAAATGGATAGGG+TGG | - | chr1.3:76837111-76837130 | None:intergenic | 50.0% | |
| CGGTGTAGCGTTTGTGTTTG+TGG | - | chr1.3:76838116-76838135 | None:intergenic | 50.0% | |
| GAGTAGTACGGATTTGGGTG+AGG | - | chr1.3:76837873-76837892 | None:intergenic | 50.0% | |
| GCTGAAATCACTGTGGTCTG+TGG | + | chr1.3:76838951-76838970 | MS.gene056263:CDS | 50.0% | |
| GTGAGGCTGAGAATCTGGTT+CGG | + | chr1.3:76838367-76838386 | MS.gene056263:CDS | 50.0% | |
| TCCAAACGCGCTTCTCAAAC+CGG | + | chr1.3:76838228-76838247 | MS.gene056263:CDS | 50.0% | |
| TGCAATGGATAAGCCTCGTG+AGG | + | chr1.3:76838350-76838369 | MS.gene056263:CDS | 50.0% | |
| ! | ACCGACAAAACAAGCGGGTT+GGG | + | chr1.3:76836998-76837017 | MS.gene056263:intron | 50.0% |
| ! | ACTGGCTGCTTTGTTGCCAA+AGG | + | chr1.3:76839077-76839096 | MS.gene056263:CDS | 50.0% |
| ! | TGAGGCTGAGAATCTGGTTC+GGG | + | chr1.3:76838368-76838387 | MS.gene056263:CDS | 50.0% |
| ACCAGATTCTCAGCCTCACG+AGG | - | chr1.3:76838366-76838385 | None:intergenic | 55.0% | |
| AGAGAGGAGGTGAGTGAGAG+TGG | - | chr1.3:76837897-76837916 | None:intergenic | 55.0% | |
| ATCACTGTGGTCTGTGGGGT+TGG | + | chr1.3:76838957-76838976 | MS.gene056263:CDS | 55.0% | |
| GACCGACAAAACAAGCGGGT+TGG | + | chr1.3:76836997-76837016 | MS.gene056263:intron | 55.0% | |
| GGTTGGAGGAGATGCAGAAG+AGG | + | chr1.3:76838898-76838917 | MS.gene056263:CDS | 55.0% | |
| ! | AGAAGAGAGGTGGTGGTGAG+CGG | - | chr1.3:76837927-76837946 | None:intergenic | 55.0% |
| ! | AGCTGGGTTTGGAGTTGAGG+AGG | - | chr1.3:76837728-76837747 | None:intergenic | 55.0% |
| ! | CGAAGCTGGGTTTGGAGTTG+AGG | - | chr1.3:76837731-76837750 | None:intergenic | 55.0% |
| ! | GTTTGGAGTTGAGGAGGAGG+AGG | - | chr1.3:76837722-76837741 | None:intergenic | 55.0% |
| ! | TGGGTTTGGAGTTGAGGAGG+AGG | - | chr1.3:76837725-76837744 | None:intergenic | 55.0% |
| !!! | GCCCAACCCGCTTGTTTTGT+CGG | - | chr1.3:76837002-76837021 | None:intergenic | 55.0% |
| GCCTCGTGAGGCTGAGAATC+TGG | + | chr1.3:76838362-76838381 | MS.gene056263:CDS | 60.0% | |
| GGAAGGATGGGAAGCTACGG+TGG | + | chr1.3:76838755-76838774 | MS.gene056263:CDS | 60.0% | |
| TTGGCATGCTAGCAGGGAGG+AGG | - | chr1.3:76836957-76836976 | None:intergenic | 60.0% | |
| !! | CAAAACAAGCGGGTTGGGCC+AGG | + | chr1.3:76837003-76837022 | MS.gene056263:intron | 60.0% |
| !! | GCCGGTTTGAGAAGCGCGTT+TGG | - | chr1.3:76838232-76838251 | None:intergenic | 60.0% |
| GCATGCTAGCAGGGAGGAGG+CGG | - | chr1.3:76836954-76836973 | None:intergenic | 65.0% | |
| GGAGGGCGAGAGAAGAGAGG+TGG | - | chr1.3:76837937-76837956 | None:intergenic | 65.0% | |
| GGGCGAGAGAAGAGAGGTGG+TGG | - | chr1.3:76837934-76837953 | None:intergenic | 65.0% | |
| ! | AGAGAGGTGGTGGTGAGCGG+TGG | - | chr1.3:76837924-76837943 | None:intergenic | 65.0% |
| ! | AGGTGGTGGTGAGCGGTGGT+GGG | - | chr1.3:76837920-76837939 | None:intergenic | 65.0% |
| CGGGGAGGGCGAGAGAAGAG+AGG | - | chr1.3:76837940-76837959 | None:intergenic | 70.0% | |
| ! | GAGGTGGTGGTGAGCGGTGG+TGG | - | chr1.3:76837921-76837940 | None:intergenic | 70.0% |
| !! | GAGCGGTGGTGGGAGAGAGG+AGG | - | chr1.3:76837910-76837929 | None:intergenic | 70.0% |
| !! | GGTGAGCGGTGGTGGGAGAG+AGG | - | chr1.3:76837913-76837932 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 76836490 | 76839142 | 76836490 | ID=MS.gene056263 |
| chr1.3 | mRNA | 76836490 | 76839142 | 76836490 | ID=MS.gene056263.t1;Parent=MS.gene056263 |
| chr1.3 | exon | 76836490 | 76836498 | 76836490 | ID=MS.gene056263.t1.exon1;Parent=MS.gene056263.t1 |
| chr1.3 | CDS | 76836490 | 76836498 | 76836490 | ID=cds.MS.gene056263.t1;Parent=MS.gene056263.t1 |
| chr1.3 | exon | 76838039 | 76839142 | 76838039 | ID=MS.gene056263.t1.exon2;Parent=MS.gene056263.t1 |
| chr1.3 | CDS | 76838039 | 76839142 | 76838039 | ID=cds.MS.gene056263.t1;Parent=MS.gene056263.t1 |
| Gene Sequence |
| Protein sequence |
