AlfalfaGEDB | MS.gene58071

M. sativa cultivar XinJiangDaYe / MS.gene58071

KEGG: K02520
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0006413 GO:0008135 GO:0008150 GO:0008152 GO:0009987 GO:0044237 GO:0045182 GO:0090079 GO:0097159 GO:1901363
PFAM: PF00707.25 PF05198.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58071.t1	XP_003610284.1	95.5	266	12	0	1	266	1	266	1.30E-131	479.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58071.t1	O82234	55.4	269	100	4	1	254	1	264	5.1e-65	249.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58071.t1	G7JFJ8	95.5	266	12	0	1	266	1	266	9.1e-132	479.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene58071	0.913907	3.57E-84	-1.69E-46
MS.gene049171	MS.gene58071	0.845819	3.20E-59	-1.69E-46
MS.gene049217	MS.gene58071	0.843843	1.09E-58	-1.69E-46
MS.gene049222	MS.gene58071	0.860292	2.29E-63	-1.69E-46
MS.gene049285	MS.gene58071	0.853291	2.63E-61	-1.69E-46
MS.gene049320	MS.gene58071	0.830143	3.47E-55	-1.69E-46
MS.gene049351	MS.gene58071	0.824971	6.05E-54	-1.69E-46
MS.gene049427	MS.gene58071	0.888446	5.86E-73	-1.69E-46
MS.gene049609	MS.gene58071	0.856243	3.67E-62	-1.69E-46
MS.gene049615	MS.gene58071	0.836164	1.10E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58071.t1	MTR_4g130530	95.489	266	12	1	266	1	266	1.33e-180	497
MS.gene58071.t1	MTR_4g130530	95.045	222	11	1	222	1	222	5.01e-148	413
MS.gene58071.t1	MTR_4g130530	95.152	165	8	1	165	1	165	1.56e-104	301
MS.gene58071.t1	MTR_7g017820	96.970	33	1	188	220	4	36	8.23e-15	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58071.t1	AT2G24060	55.556	270	98	4	1	254	1	264	1.55e-89	268
MS.gene58071.t1	AT4G30690	57.371	251	98	4	1	250	14	256	4.92e-87	261
MS.gene58071.t1	AT4G30690	50.199	251	88	4	1	250	14	228	3.26e-72	222
MS.gene58071.t1	AT1G34360	34.783	115	71	2	82	194	23	135	4.46e-11	63.2
MS.gene58071.t1	AT1G34360	34.783	115	71	2	82	194	89	201	4.50e-11	63.2
MS.gene58071.t1	AT1G34360	33.913	115	72	2	82	194	89	201	4.57e-11	63.2

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Find 57 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCCGTCCTTCCGCCTA+CGG	0.484697	8.4:+3844059	MS.gene58071:CDS
AACGGGAACGACGGTGGTGG+TGG	0.470380	8.4:-3843922	None:intergenic
AAGGTCATAGTAAACCTTAA+AGG	0.442796	8.4:+3847094	MS.gene58071:CDS
ACCGTAACGAACGGTTGCGT+GGG	0.576730	8.4:-3844033	None:intergenic
ACTCTGATCAATAAGCCTAA+CGG	0.652818	8.4:-3844260	None:intergenic
AGCTAGTCGGATGGATTTGA+AGG	0.496946	8.4:+3846253	MS.gene58071:intron
AGCTGAAGCAGATGAAGTCT+CGG	0.555824	8.4:+3847571	MS.gene58071:CDS
AGGGAGAAGATTGAAAATTG+AGG	0.492839	8.4:-3843995	None:intergenic
ATACGTACCTAAGTTTGGAG+AGG	0.687696	8.4:-3844145	None:intergenic
ATGCGAGGCTTTGAGTTTAA+CGG	0.431987	8.4:-3843940	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAGATATCAGCAGAG+TGG	-	chr8.4:3847379-3847398	None:intergenic	30.0%
AAAATGGGGTAATATCCTAA+AGG	+	chr8.4:3846281-3846300	MS.gene58071:intron	30.0%
AACATAAGAAAGGATGATCT+AGG	-	chr8.4:3846309-3846328	None:intergenic	30.0%
AAGAAAAATAACCCAAGACA+AGG	-	chr8.4:3846767-3846786	None:intergenic	30.0%
AAGGTCATAGTAAACCTTAA+AGG	+	chr8.4:3847094-3847113	MS.gene58071:CDS	30.0%
AGCATTTGTACCAAAAAAGA+AGG	+	chr8.4:3847235-3847254	MS.gene58071:intron	30.0%
ATAAAAAAACCAGTGGTTGA+TGG	+	chr8.4:3844973-3844992	MS.gene58071:intron	30.0%
ATTTGAAGGAGCTTAAAATG+GGG	+	chr8.4:3846267-3846286	MS.gene58071:CDS	30.0%
CAATGTTATGAAAATTGGAC+CGG	-	chr8.4:3845289-3845308	None:intergenic	30.0%
CATAAGTAATATGTGCTCAA+AGG	-	chr8.4:3844725-3844744	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	3843909	3847610	3843909	ID=MS.gene58071
chr8.4	mRNA	3843909	3847610	3843909	ID=MS.gene58071.t1;Parent=MS.gene58071
chr8.4	exon	3843909	3844159	3843909	ID=MS.gene58071.t1.exon1;Parent=MS.gene58071.t1
chr8.4	CDS	3843909	3844159	3843909	ID=cds.MS.gene58071.t1;Parent=MS.gene58071.t1
chr8.4	exon	3844252	3844351	3844252	ID=MS.gene58071.t1.exon2;Parent=MS.gene58071.t1
chr8.4	CDS	3844252	3844351	3844252	ID=cds.MS.gene58071.t1;Parent=MS.gene58071.t1
chr8.4	exon	3844796	3844848	3844796	ID=MS.gene58071.t1.exon3;Parent=MS.gene58071.t1
chr8.4	CDS	3844796	3844848	3844796	ID=cds.MS.gene58071.t1;Parent=MS.gene58071.t1
chr8.4	exon	3846094	3846149	3846094	ID=MS.gene58071.t1.exon4;Parent=MS.gene58071.t1
chr8.4	CDS	3846094	3846149	3846094	ID=cds.MS.gene58071.t1;Parent=MS.gene58071.t1
chr8.4	exon	3846255	3846288	3846255	ID=MS.gene58071.t1.exon5;Parent=MS.gene58071.t1
chr8.4	CDS	3846255	3846288	3846255	ID=cds.MS.gene58071.t1;Parent=MS.gene58071.t1
chr8.4	exon	3846925	3846997	3846925	ID=MS.gene58071.t1.exon6;Parent=MS.gene58071.t1
chr8.4	CDS	3846925	3846997	3846925	ID=cds.MS.gene58071.t1;Parent=MS.gene58071.t1
chr8.4	exon	3847091	3847183	3847091	ID=MS.gene58071.t1.exon7;Parent=MS.gene58071.t1
chr8.4	CDS	3847091	3847183	3847091	ID=cds.MS.gene58071.t1;Parent=MS.gene58071.t1
chr8.4	exon	3847470	3847610	3847470	ID=MS.gene58071.t1.exon8;Parent=MS.gene58071.t1
chr8.4	CDS	3847470	3847610	3847470	ID=cds.MS.gene58071.t1;Parent=MS.gene58071.t1

Gene Sequence

>MS.gene58071

ATGGCTGGCATTACCACCACCACCGTCGTTCCCGTTAAACTCAAAGCCTCGCATCTATTCTCTAATAAACTCTCTATTCCTCATTCCCTCAATTTTCAATCTTCTCCCTCATTCACTCTTCCTTCCCACGCAACCGTTCGTTACGGTGTTAACCTCCGTCCTTCCGCCTACGGTGGCGGTGGCAACTTCAGAAGACCTCCTCCTAACAAAGATGCTGACGATGAACAAGCTCTCGACCTCTCCAAACTTAGGTACGTATTCTAACTCATACTTGATTCCATTCCATTCCATTTCTATTTCGAATTTTTGTGCTTAATGATGTTACTTTCGATTTTTGAAATAGGTCGAATACCGTTAGGCTTATTGATCAGAGTCAGAATATGGTTGGAGTAGTATCTCTTGATCAGGCAATTCGAATGGCTGAAGATGCTGAACTTGATTTGGTATGTTCATATTTTTGACTCAGTTCTATCATATAGGCATGATTTGGATATAAACAACTTATTCACCGCTTATAGCACCCACACACGCGCACACACACACACACACACACACACACACACACACACACACACACTTATGTATAAGCTATTTCTATAACACAAAATAAATAAAGTTAAATTGTTTTTGTATATGCTATTAGCTGTTTTAATAAGATATCTTGGAGAAATTTTGAAAATAAGTTGAAAACTGCTATAATGAGTATTGCGAATGCAAGGGATTGATTGAGCTATTTCTAGGTTTGTGTTGTTGAAAACCCAACTGTTTCAAATCAGTTCACAATATATTCAGCATACACTTCTTTTCCATTGACCTTTGAGCACATATTACTTATGACATGACACAATTGCATAGGCTTATTTTTTTCCACTCTCTTTCCCCTGTAGGTAATAGTATCTGCAGAGGCAGATCCTCCTGTTGTTAGAATAATGAATTACAGGTAAGAACTCAGTCCGTCCTGAAATATATTAAACTTTACATTTTGTATTTTTAGTCTCTCTCACATCCACACACACACACACACACAACTTGCATATTTTTTATTTTTTGAAATTGAATATAGTATAAAAAAACCAGTGGTTGATGGCATTACAAAGCAATGCTTTTAAAAATCGGTTCAGTCATTGAACTGGTTAAGACACTCATTCACCGTTCAGTGGTTCAACCTTAGTTGTATCATTGTCTAGCTAATGATAATTAAATTTATGTTTCTGAGATTATATAATACATTAAGTAATAAATTAATTAATATAACGATATTGAAGATATAGACAAATTCAATTTTAAACTAATATAAAATGATTATATTATATGGTTTGGATGGTTAGTTTTTTGGTTCAAATTGATTAGACTCCTCCTGACTGGCTCCCAAACCAGCCGGTCCAATTTTCATAACATTGGTATAAGGTGGTCATGTAAGGATGCGATAATATTTATTTCGAATGTTCATTTTTGGATGCCAATCATTAAGTAGCCACAAGTAGGTTATAGGACGATAGACAATTATCCAAATTTGGTGTATAGCGTTTCTTTCTTCTAGCCTTATGCAACTACTTGGGGTTCCAATTTTAATGTGACAGGGGAGAGTGGTAGTAAAGGTGGGAGCATTGGTTAAAAGCATGTCTAAATATCTGCAGTGTGAAATGGATAACTCAATTTTTAGGGCTTTGTTATTTTTGTAAGTCTTTAGGATTTGTGTTGCCGTTTTTTAAGATTAAGATGGTGTATTTGTTTCTCTTTTAGACTCTAGCTCTATTTATCAGAGCAATCTAATTAATATTTACAGTATCATCTTCTACACAACATTTCCTGTCTTTTTTTCTTGCTCTTATAATAAAACAAATGCATCATTTGCATTGAATGAAATGTTGTGCTTTTATTTTGTCTTGAATGTTGTTAATTTGGATGGTAGGTGATTTTGTAATTAAGATTCATTCCGATTTTGTTTTTTCGGGGTGGGGCTATTGTGAAGAAAACAAGCTATCAGTAATGTAGAATCAACATAGAGATTAACCCAAACACGTTGTTTCATGAAAGACATTTTGCCTTTGACTTTCACTTAACACAATCAGAAGAATCTCTTGGTGGGGCTGTGTTTACTTCTACTTCTTTTCTGCCTGCTCACTTGCATACTTACTCGCGGACCTTGAAAGTCAGCGTTCCTTATATTTTTCTTCTTTTACAGTAAATATAGATATGAACTGCAGAAGAAGAAAAGAGATCAGCAGAAGAAAAGTGCTGGTAAGCATTGTATTTATTGGACTGACATTTTCCTTTATATCATTTACAATTTTACAGAACTCGGTCAAAATATAAATTGCTGATCCAATGATCTTTTTAATGTAGCTAGTCGGATGGATTTGAAGGAGCTTAAAATGGGGTAATATCCTAAAGGAGCCTAGATCATCCTTTCTTATGTTTCATAGAAAATAAAGCAGAAAAGAAATATCTGAATTCTTGTTCTTTGGTTCCTAATCAGATTTGACCCATTCTTGGTTATGGACCAATTTAATCATCAATATTTCTATAAGGGTTAGAAATGTGAACATATACATTTTTGTTATTGCCGTACATTCTTATGGGGTTTACTCTATGTTCTCTTGGAAGGCATTATACCTATCTTTACTTGTTAATTTTTTTCATTGCTCGAGAAACTAGAAGAAATAAGCTGCATCTGTTGTGCAGTTTATTGTTCACAACTTGCTTCTTGGTTATGAACTTGGGTTCAGTTAGGAAACGACACACCAAGAGGAGTTTGTTTAATCCTACTGCTCAAAGATAAACATAGGAAGTGGCAAATGTCGGGCATTCCATCATTTATATCTTGACAGAACAGTATTATTTTAAAGCATAAACCTTGTCTTGGGTTATTTTTCTTTTGATAACATGAACTCAATTTGACCAGTTCCAGAGTTTACTTTTTATGAACCAGCGTTAGTTTTGAGTTGTAGTTATACTCAATTATTTTTGCTAGAATGTGATTTTGTTTATTGTTTTGTTTGGTTATTTTTAACAGATACAATATAGATCAACATGATTATTCTGTACGTTTGAAAGCTGCACGGAAATTTTTGAATGATGGTGACAAGGTTACATTAATTCTTTTGATATTGCACACTATACATACAAATTAAATATGTTATCTTCAAGTGTATTCAGATCTTTTGGATCAATTGCTGCAGGTTAAGGTCATAGTAAACCTTAAAGGTCGTGAAAAAGAATTCAGGAATAATGCTATTGAGCTTATTAGACGTTTTCAGAACGATGTTGGGAAGGTATGTGATGCCGCTTTGCTATGTTCTGGTCGAGTAATATCATATTTCTTAAGCATTTGTACCAAAAAAGAAGGTCCTATGACGTGCTTTACAGATACTCTCTTGGCACACTTCAATACTTCTTAATCATCACATTATTTAATGTCTCCTTTTCTATTTAAATCATTTACGTTTAGCATATTCATTTTGCAGCCACTCTGCTGATATCTTATTTTATTATCACTGGAGAAAAAAAAATTTACCGCCTAAGTGTATTTTATATCTAAACCACACGGGTCATGTGCAGCTTGCAACAGAGGAGGCTAAAAACTTCCGCGACAAAAACATCTTCATAACTTTGATTCCAAATAAAACTGAAGTGCAGAAACCTCAAGAAACACCAAAGAAAGCTGAAGCAGATGAAGTCTCGGTCAGTGTCGAAGCATAG

Protein sequence

>MS.gene58071.t1

MAGITTTTVVPVKLKASHLFSNKLSIPHSLNFQSSPSFTLPSHATVRYGVNLRPSAYGGGGNFRRPPPNKDADDEQALDLSKLRSNTVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLNDGDKVKVIVNLKGREKEFRNNAIELIRRFQNDVGKLATEEAKNFRDKNIFITLIPNKTEVQKPQETPKKAEADEVSVSVEA