Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056274.t1 | XP_013470352.1 | 99.9 | 895 | 1 | 0 | 1 | 895 | 1 | 895 | 0.00E+00 | 1670.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056274.t1 | Q8H0U4 | 70.5 | 893 | 260 | 3 | 3 | 895 | 2 | 891 | 0.0e+00 | 1271.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056274.t1 | A0A072W2D6 | 99.9 | 895 | 1 | 0 | 1 | 895 | 1 | 895 | 0.0e+00 | 1670.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056274 | MS.gene064992 | 0.98891 | 6.54E-176 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene014808 | MS.gene056274 | PPI |
MS.gene072925 | MS.gene056274 | PPI |
MS.gene32605 | MS.gene056274 | PPI |
MS.gene072924 | MS.gene056274 | PPI |
MS.gene32604 | MS.gene056274 | PPI |
MS.gene072926 | MS.gene056274 | PPI |
MS.gene32606 | MS.gene056274 | PPI |
MS.gene014809 | MS.gene056274 | PPI |
MS.gene014807 | MS.gene056274 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056274.t1 | MTR_1g112920 | 99.888 | 895 | 1 | 0 | 1 | 895 | 1 | 895 | 0.0 | 1839 |
MS.gene056274.t1 | MTR_1g112920 | 99.629 | 809 | 3 | 0 | 1 | 809 | 1 | 809 | 0.0 | 1655 |
MS.gene056274.t1 | MTR_8g099785 | 21.550 | 826 | 488 | 35 | 28 | 774 | 12 | 756 | 6.32e-22 | 102 |
MS.gene056274.t1 | MTR_3g491860 | 21.566 | 779 | 465 | 31 | 68 | 774 | 51 | 755 | 4.09e-20 | 96.7 |
MS.gene056274.t1 | MTR_3g491840 | 22.074 | 598 | 371 | 20 | 68 | 612 | 51 | 606 | 1.59e-18 | 91.7 |
MS.gene056274.t1 | MTR_2g006750 | 20.896 | 536 | 342 | 13 | 36 | 554 | 20 | 490 | 5.96e-17 | 86.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056274.t1 | AT2G16950 | 75.028 | 893 | 220 | 3 | 3 | 895 | 2 | 891 | 0.0 | 1397 |
MS.gene056274.t1 | AT2G16950 | 74.693 | 897 | 220 | 4 | 3 | 895 | 2 | 895 | 0.0 | 1390 |
MS.gene056274.t1 | AT2G16960 | 51.264 | 554 | 252 | 6 | 357 | 895 | 2 | 552 | 0.0 | 548 |
MS.gene056274.t1 | AT2G16960 | 51.418 | 282 | 114 | 3 | 317 | 598 | 1 | 259 | 5.69e-86 | 284 |
MS.gene056274.t1 | AT2G16960 | 47.984 | 248 | 116 | 3 | 661 | 895 | 258 | 505 | 9.47e-63 | 221 |
MS.gene056274.t1 | AT5G53480 | 22.826 | 552 | 328 | 17 | 68 | 573 | 53 | 552 | 1.66e-21 | 101 |
MS.gene056274.t1 | AT3G08947 | 24.277 | 346 | 189 | 10 | 238 | 555 | 19 | 319 | 3.20e-16 | 83.6 |
MS.gene056274.t1 | AT3G08947 | 24.277 | 346 | 189 | 10 | 238 | 555 | 19 | 319 | 3.68e-16 | 83.6 |
MS.gene056274.t1 | AT2G16953 | 45.783 | 83 | 17 | 2 | 726 | 808 | 9 | 63 | 7.29e-13 | 64.7 |
Find 230 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTCTCTTGATTTGCTTTC+TGG | 0.001329 | 1.3:+76746093 | MS.gene056274:CDS |
TATTTCTTCCCAGATTATTT+AGG | 0.165061 | 1.3:+76740473 | MS.gene056274:CDS |
GATTGGAATATTGTTGAATT+TGG | 0.172792 | 1.3:-76737200 | None:intergenic |
GGGTCTTCTTCGAAGAATTT+TGG | 0.204358 | 1.3:+76744582 | MS.gene056274:CDS |
ACAATTTGACAACGTTCTTA+TGG | 0.206291 | 1.3:+76744561 | MS.gene056274:CDS |
CAAGGAGATCTGCACCTTAT+TGG | 0.211567 | 1.3:+76737125 | MS.gene056274:CDS |
GTACATCGGTGTCAAGAATT+TGG | 0.218570 | 1.3:-76740423 | None:intergenic |
TTCACGTATTGTTGGTATTC+AGG | 0.235848 | 1.3:-76738295 | None:intergenic |
CTCTCGAATCCTGTGAATTT+TGG | 0.239943 | 1.3:+76741765 | MS.gene056274:CDS |
CAGGCCAATCCTGCTGCAGC+TGG | 0.248030 | 1.3:+76746042 | MS.gene056274:intron |
CAGGTCAAAGCCAATCCTTC+TGG | 0.254724 | 1.3:+76750719 | MS.gene056274:intron |
AGAAATTTGTTGCTCCAATA+AGG | 0.264624 | 1.3:-76737139 | None:intergenic |
GTTGACATGCATAGGAAATA+AGG | 0.265987 | 1.3:+76750860 | MS.gene056274:intron |
GTTTAGCAAATTTATTATTC+AGG | 0.266638 | 1.3:+76744054 | MS.gene056274:CDS |
GATATTCTCTCAAACGTCTT+TGG | 0.272366 | 1.3:+76742869 | MS.gene056274:CDS |
ATTTCTTCCCAGATTATTTA+GGG | 0.299791 | 1.3:+76740474 | MS.gene056274:CDS |
TGATGTTACCCTAAATAATC+TGG | 0.300241 | 1.3:-76740482 | None:intergenic |
TACAAGGGCTTGCAATAATT+CGG | 0.300709 | 1.3:-76738422 | None:intergenic |
CAAAGTGCATTTGCCTTACT+TGG | 0.306195 | 1.3:+76747022 | MS.gene056274:CDS |
TACATCGGTGTCAAGAATTT+GGG | 0.317331 | 1.3:-76740422 | None:intergenic |
TTGTCAACACATGGAATTTA+CGG | 0.320017 | 1.3:+76742825 | MS.gene056274:CDS |
TTGATCCATGGATACATATA+AGG | 0.331730 | 1.3:-76740775 | None:intergenic |
AGCATGAAATACTTCGTATC+AGG | 0.336523 | 1.3:-76744018 | None:intergenic |
CAATTTGACAACGTTCTTAT+GGG | 0.336844 | 1.3:+76744562 | MS.gene056274:CDS |
GAGAAAGAAGATGCCTTTAG+AGG | 0.340072 | 1.3:+76750603 | MS.gene056274:CDS |
ATCAGTGTTGTTGTTCAAAC+TGG | 0.347298 | 1.3:+76738382 | MS.gene056274:CDS |
AAGCACCTGATGGTTGCATT+TGG | 0.352910 | 1.3:+76744805 | MS.gene056274:CDS |
CCATACTGCAGCCACATCTA+AGG | 0.353767 | 1.3:+76741690 | MS.gene056274:intron |
AGCACCTGATGGTTGCATTT+GGG | 0.375893 | 1.3:+76744806 | MS.gene056274:CDS |
CTTTAAATCACCTCAACAAT+AGG | 0.377945 | 1.3:-76742917 | None:intergenic |
ATTGTTGAAGTCAGGAAGAT+TGG | 0.379166 | 1.3:-76737217 | None:intergenic |
TTCAGCAAATTGAGTGAATC+CGG | 0.379593 | 1.3:-76745785 | None:intergenic |
AATTTGCTGAACCTGTGTTT+AGG | 0.380548 | 1.3:+76745797 | MS.gene056274:CDS |
AGCCCCAGCTGCAGCAGGAT+TGG | 0.381992 | 1.3:-76746046 | None:intergenic |
CCGCTGATAAGTCTCAGATT+TGG | 0.382450 | 1.3:+76737175 | MS.gene056274:CDS |
TGCTGCCACTTCTCAATTAA+CGG | 0.388192 | 1.3:-76745190 | None:intergenic |
GTCAAATTGTTCGTAACCCT+TGG | 0.388416 | 1.3:-76744548 | None:intergenic |
ATGAGGTAATTGTTGAAGTC+AGG | 0.393517 | 1.3:-76737225 | None:intergenic |
ATGTGTGTGGGTTAGGGTAT+CGG | 0.398560 | 1.3:+76744520 | MS.gene056274:intron |
AGGCCAATCCTGCTGCAGCT+GGG | 0.399079 | 1.3:+76746043 | MS.gene056274:intron |
GCGCACACATACCAGTTGTT+TGG | 0.401100 | 1.3:-76747341 | None:intergenic |
AATAATGCATGCTGGGCAAT+TGG | 0.401733 | 1.3:+76747467 | MS.gene056274:CDS |
ATGAGAATGTCAAGATAAAC+AGG | 0.402241 | 1.3:-76745163 | None:intergenic |
ATCTCCGACGGTTGACAACT+TGG | 0.403039 | 1.3:-76743216 | None:intergenic |
TGAAGAGCTGGCACCGCGCT+TGG | 0.405454 | 1.3:+76744771 | MS.gene056274:CDS |
ACAAGGGCTTGCAATAATTC+GGG | 0.405569 | 1.3:-76738421 | None:intergenic |
TTTCATGTATCAAGGTTTCA+TGG | 0.405890 | 1.3:+76742607 | MS.gene056274:CDS |
GAACTCTAGCTGAAGCTGTT+GGG | 0.406676 | 1.3:+76745030 | MS.gene056274:CDS |
AAATGTACAGGAAATTTCTA+AGG | 0.406680 | 1.3:+76747421 | MS.gene056274:intron |
TTCGGCAACGATGGCGGCGG+CGG | 0.408972 | 1.3:+76737068 | None:intergenic |
ACCTCTGCATGCTGAAGAAT+TGG | 0.416754 | 1.3:-76749394 | None:intergenic |
TCCTTGAAGCCTTGCTCTTG+TGG | 0.420545 | 1.3:-76737108 | None:intergenic |
GGCCAATCCTGCTGCAGCTG+GGG | 0.422969 | 1.3:+76746044 | MS.gene056274:intron |
TGGCAGTGGAATAGAGAGTT+TGG | 0.427529 | 1.3:+76746131 | MS.gene056274:CDS |
GGAAATTTCTAAGGTGCATC+AGG | 0.428251 | 1.3:+76747430 | MS.gene056274:intron |
CTAGAACCTTAGCCAATGTC+TGG | 0.433718 | 1.3:-76745843 | None:intergenic |
AATTGGAGAATTAGCAGTTA+AGG | 0.443187 | 1.3:+76747484 | MS.gene056274:CDS |
TGAACTTGCCTCCAAACAAC+TGG | 0.443517 | 1.3:+76747330 | MS.gene056274:CDS |
TGAAGTCCGTCCGTCTATCT+TGG | 0.443843 | 1.3:+76741270 | MS.gene056274:CDS |
ACTCTGATTTCACGTATTGT+TGG | 0.445336 | 1.3:-76738303 | None:intergenic |
TTCTCAACCTGATCGAGATC+AGG | 0.450786 | 1.3:+76742496 | MS.gene056274:CDS |
GTGGAGGTTCGACAGGCTGC+AGG | 0.450835 | 1.3:+76738226 | MS.gene056274:CDS |
TAACACTGGGGAGGCTTGCA+TGG | 0.452151 | 1.3:+76749532 | MS.gene056274:CDS |
TTTAAGTGTAATTTCATGCC+TGG | 0.452548 | 1.3:+76749369 | MS.gene056274:CDS |
GGTTGCATTTGGGAAATATC+AGG | 0.455320 | 1.3:+76744816 | MS.gene056274:CDS |
GGTCTTGCATGGGTATAAAC+AGG | 0.456424 | 1.3:+76750912 | MS.gene056274:CDS |
TGTGTGTGGGTTAGGGTATC+GGG | 0.457317 | 1.3:+76744521 | MS.gene056274:intron |
GCACTTGGTGCCATAGGCGA+GGG | 0.460140 | 1.3:+76743272 | MS.gene056274:CDS |
TTGTTACAGGCACTGGGTCC+CGG | 0.460458 | 1.3:+76745766 | MS.gene056274:intron |
AGACCTTGTATCACCACATA+TGG | 0.461098 | 1.3:+76749563 | MS.gene056274:CDS |
TCGAGCAAGGTCTCCAAGTA+AGG | 0.463436 | 1.3:-76747035 | None:intergenic |
GCAAGCCCTTGTAAGTTGCT+TGG | 0.463586 | 1.3:+76738432 | MS.gene056274:CDS |
TTCATTAAGAAAGCTATCGT+TGG | 0.466949 | 1.3:+76740616 | MS.gene056274:CDS |
TGCTCTTGTGGTTGCCACGA+TGG | 0.468773 | 1.3:-76737096 | None:intergenic |
TCAAATTGTTCGTAACCCTT+GGG | 0.469035 | 1.3:-76744547 | None:intergenic |
AACCTCGATTTCATGTATCA+AGG | 0.469473 | 1.3:+76742599 | MS.gene056274:CDS |
TCTGGGAAGAAATATATTGA+TGG | 0.469870 | 1.3:-76740464 | None:intergenic |
TACTGAGCCCCAGCTGCAGC+AGG | 0.470834 | 1.3:-76746051 | None:intergenic |
AATTTCTGTGGAGGTTCGAC+AGG | 0.471977 | 1.3:+76738219 | MS.gene056274:CDS |
GAAGCTGCCGTCTTGGCACT+TGG | 0.472209 | 1.3:+76743257 | MS.gene056274:CDS |
TTAATGAAGCGTGAGGTGAT+TGG | 0.472656 | 1.3:-76740601 | None:intergenic |
ATTGATGCACCCCTCGCCTA+TGG | 0.472848 | 1.3:-76743282 | None:intergenic |
TGTTGGGGCAGAGCTGAATC+AGG | 0.472935 | 1.3:+76745046 | MS.gene056274:CDS |
GAGATGATGGTTGGAAAGAA+AGG | 0.473248 | 1.3:+76743234 | MS.gene056274:CDS |
GGTTTCACAATGTTCTTTGA+GGG | 0.475278 | 1.3:+76746955 | MS.gene056274:intron |
CTCTGCTAAGCCTGGTACAT+CGG | 0.475304 | 1.3:-76740437 | None:intergenic |
TTGTCAACCGTCGGAGATGA+TGG | 0.475872 | 1.3:+76743221 | MS.gene056274:CDS |
TTAAATTGTATACATTCCTC+AGG | 0.483514 | 1.3:-76738267 | None:intergenic |
GGAACTCTAGCTGAAGCTGT+TGG | 0.485991 | 1.3:+76745029 | MS.gene056274:CDS |
TTAGGGTATCGGGCATCCCA+AGG | 0.486599 | 1.3:+76744531 | MS.gene056274:intron |
TACTGTCCAAGCAACTTACA+AGG | 0.487673 | 1.3:-76738438 | None:intergenic |
ATATGTGGTGATACAAGGTC+TGG | 0.487991 | 1.3:-76749561 | None:intergenic |
TCTGGACTAACAGAGGGTCT+TGG | 0.492966 | 1.3:+76746111 | MS.gene056274:CDS |
ACCACAAGAGCAAGGCTTCA+AGG | 0.493504 | 1.3:+76737107 | MS.gene056274:CDS |
ATAGGCGAGGGGTGCATCAA+TGG | 0.494250 | 1.3:+76743284 | MS.gene056274:CDS |
CTTCATCTTCTCCCGTGCTC+AGG | 0.496141 | 1.3:+76737248 | MS.gene056274:CDS |
GGCACTTGGTGCCATAGGCG+AGG | 0.496324 | 1.3:+76743271 | MS.gene056274:CDS |
CATAGCACATAGACCTCTAA+AGG | 0.497484 | 1.3:-76750616 | None:intergenic |
GGAAACTTATCATCAAGAAG+AGG | 0.498404 | 1.3:-76743995 | None:intergenic |
AGGTTTCACAATGTTCTTTG+AGG | 0.500017 | 1.3:+76746954 | MS.gene056274:intron |
AGAAAATAGTGCAATAACAC+TGG | 0.500123 | 1.3:+76749518 | MS.gene056274:CDS |
TACTCTGATGCCTATTGTTG+AGG | 0.503181 | 1.3:+76742907 | MS.gene056274:CDS |
GGATGATAATAAGCGTGTAC+AGG | 0.504024 | 1.3:+76744603 | MS.gene056274:CDS |
GATTTCGGCAACGATGGCGG+CGG | 0.504335 | 1.3:+76737065 | None:intergenic |
GTAGGAGGCTGCTGAAGAGC+TGG | 0.505364 | 1.3:+76744759 | MS.gene056274:intron |
TCATTAAGAAAGCTATCGTT+GGG | 0.507655 | 1.3:+76740617 | MS.gene056274:CDS |
ACTTAGAGCTCCAGAAGGAT+TGG | 0.507834 | 1.3:-76750729 | None:intergenic |
CCGTGGCAAATAATGCATGC+TGG | 0.511391 | 1.3:+76747459 | MS.gene056274:CDS |
CATGCTGAAGAATTGGTACC+AGG | 0.511727 | 1.3:-76749387 | None:intergenic |
GAAGTCTGCCAGGTCTTGCA+TGG | 0.512364 | 1.3:+76750901 | MS.gene056274:CDS |
TCCATGGATCAATATCTTCA+AGG | 0.514235 | 1.3:+76740786 | MS.gene056274:CDS |
AGAAAGGGAAGCTGCCGTCT+TGG | 0.515248 | 1.3:+76743250 | MS.gene056274:CDS |
ATTTCCCAAATGCAACCATC+AGG | 0.515910 | 1.3:-76744810 | None:intergenic |
TCAGAGTTGCTGCCTTGTCT+CGG | 0.517680 | 1.3:+76738319 | MS.gene056274:CDS |
CTAACAGAGGGTCTTGGCAG+TGG | 0.521808 | 1.3:+76746117 | MS.gene056274:CDS |
CACACATACCAGTTGTTTGG+AGG | 0.522579 | 1.3:-76747338 | None:intergenic |
GCAGATATTGTTGTCAAACA+TGG | 0.522794 | 1.3:+76742331 | MS.gene056274:intron |
GATGTTACCCTAAATAATCT+GGG | 0.525662 | 1.3:-76740481 | None:intergenic |
CAAGTAAGGCAAATGCACTT+TGG | 0.525940 | 1.3:-76747021 | None:intergenic |
AGATGCTGCGCAATGGAGCA+TGG | 0.527099 | 1.3:+76751163 | MS.gene056274:intron |
GTCTTGGCACTTGGTGCCAT+AGG | 0.527194 | 1.3:+76743266 | MS.gene056274:CDS |
AAGCAGACCTGATCTCGATC+AGG | 0.528456 | 1.3:-76742503 | None:intergenic |
CGTGGCAAATAATGCATGCT+GGG | 0.532263 | 1.3:+76747460 | MS.gene056274:CDS |
ATTCTTGACACCGATGTACC+AGG | 0.532980 | 1.3:+76740427 | MS.gene056274:CDS |
AACTCTAGCTGAAGCTGTTG+GGG | 0.536483 | 1.3:+76745031 | MS.gene056274:CDS |
TAGGCTTACTGGAATAAGAC+GGG | 0.537920 | 1.3:-76742235 | None:intergenic |
GAAATTACACTTAAAACAAA+CGG | 0.538928 | 1.3:-76749361 | None:intergenic |
AGATGATGGTTGGAAAGAAA+GGG | 0.540726 | 1.3:+76743235 | MS.gene056274:CDS |
ATGGGCCGCTCTGCTAAGCC+TGG | 0.541464 | 1.3:-76740445 | None:intergenic |
TGAAATTTGTTACAGGCACT+GGG | 0.542098 | 1.3:+76745760 | MS.gene056274:intron |
AGTCCGTCCGTCTATCTTGG+AGG | 0.542642 | 1.3:+76741273 | MS.gene056274:CDS |
TGGAGCATTTCATGCAACCT+TGG | 0.543238 | 1.3:+76749583 | MS.gene056274:CDS |
TTTCATGCTGGACAGTATCT+CGG | 0.543512 | 1.3:+76744032 | MS.gene056274:CDS |
CTGGGAAGAAATATATTGAT+GGG | 0.543520 | 1.3:-76740463 | None:intergenic |
CTTTAGAGGTCTATGTGCTA+TGG | 0.547073 | 1.3:+76750617 | MS.gene056274:CDS |
AAATCACATGGAAGGTGCAA+TGG | 0.547875 | 1.3:+76738468 | MS.gene056274:CDS |
GCTCCATATGTGGTGATACA+AGG | 0.548018 | 1.3:-76749566 | None:intergenic |
TTAGGCCTTATATGTATCCA+TGG | 0.548665 | 1.3:+76740770 | MS.gene056274:intron |
GACAATACCTCTGGCAGATG+AGG | 0.549518 | 1.3:-76743314 | None:intergenic |
TTTACACAATGAAGTCTGCC+AGG | 0.551434 | 1.3:+76750891 | MS.gene056274:CDS |
CAGTACAACATTGCAAAAGT+AGG | 0.552476 | 1.3:-76746979 | None:intergenic |
CAACCGTCGGAGATGATGGT+TGG | 0.552627 | 1.3:+76743225 | MS.gene056274:CDS |
GATGTGAAGCACTCTAGAAG+TGG | 0.553176 | 1.3:-76745241 | None:intergenic |
CAGTAGTGATTTAAATCACA+TGG | 0.555357 | 1.3:+76738456 | MS.gene056274:CDS |
GTGCAGCAGATAAACACATA+AGG | 0.557393 | 1.3:+76738341 | MS.gene056274:CDS |
TTGCTTTCTGGACTAACAGA+GGG | 0.557462 | 1.3:+76746105 | MS.gene056274:CDS |
GCATGAAATACTTCGTATCA+GGG | 0.559620 | 1.3:-76744017 | None:intergenic |
TACTGCAGAAGTGCGGAAGT+TGG | 0.562642 | 1.3:+76740833 | MS.gene056274:CDS |
ACCTTGAAGATATTGATCCA+TGG | 0.563420 | 1.3:-76740787 | None:intergenic |
TCAGACCCAGACATTGGCTA+AGG | 0.565324 | 1.3:+76745837 | MS.gene056274:CDS |
TGTGTAAAGCCATTGCAAGT+TGG | 0.567608 | 1.3:+76750765 | MS.gene056274:CDS |
ACATACATGCCAACTTGCAA+TGG | 0.570331 | 1.3:-76750774 | None:intergenic |
AGAATTGTATATGATGCTGT+TGG | 0.571114 | 1.3:+76745008 | MS.gene056274:CDS |
CAAATAGTACCAAAATTCAC+AGG | 0.573838 | 1.3:-76741774 | None:intergenic |
AACACTGGGGAGGCTTGCAT+GGG | 0.576589 | 1.3:+76749533 | MS.gene056274:CDS |
GAATGAAGATACCTGAGCAC+GGG | 0.578328 | 1.3:-76737259 | None:intergenic |
CCAGCATGCATTATTTGCCA+CGG | 0.578982 | 1.3:-76747459 | None:intergenic |
GATGCTGCGCAATGGAGCAT+GGG | 0.582692 | 1.3:+76751164 | MS.gene056274:intron |
GTTATATAGATGCTGCGCAA+TGG | 0.582846 | 1.3:+76751156 | MS.gene056274:intron |
TTGCTGAACCTGTGTTTAGG+AGG | 0.584270 | 1.3:+76745800 | MS.gene056274:CDS |
GAAACTTATCATCAAGAAGA+GGG | 0.586624 | 1.3:-76743994 | None:intergenic |
AACTTCCGCACTTCTGCAGT+AGG | 0.586898 | 1.3:-76740831 | None:intergenic |
TTATCTGCTGCACCGAGACA+AGG | 0.587214 | 1.3:-76738331 | None:intergenic |
GTTTATACCCATGCAAGACC+TGG | 0.588423 | 1.3:-76750909 | None:intergenic |
CATAATTCAGACCCAGACAT+TGG | 0.589201 | 1.3:+76745831 | MS.gene056274:CDS |
AGTGTTGTTGTTCAAACTGG+AGG | 0.589586 | 1.3:+76738385 | MS.gene056274:CDS |
TTAGGCTTACTGGAATAAGA+CGG | 0.590304 | 1.3:-76742236 | None:intergenic |
GGACCAGTGTATGTCTGCAT+TGG | 0.592264 | 1.3:+76751185 | MS.gene056274:CDS |
TGCCACCGTTAATTGAGAAG+TGG | 0.593114 | 1.3:+76745185 | MS.gene056274:CDS |
TCAGCAAATTGAGTGAATCC+GGG | 0.593150 | 1.3:-76745784 | None:intergenic |
TTTCCAACCATCATCTCCGA+CGG | 0.597210 | 1.3:-76743228 | None:intergenic |
AATCATATTAAAGCACCTGA+TGG | 0.597348 | 1.3:+76744795 | MS.gene056274:CDS |
TATGGCACCAAGTGCCAAGA+CGG | 0.600274 | 1.3:-76743264 | None:intergenic |
TGCAATGGATGCATTATCCA+AGG | 0.601884 | 1.3:+76738483 | MS.gene056274:CDS |
GAAAATAGTGCAATAACACT+GGG | 0.602429 | 1.3:+76749519 | MS.gene056274:CDS |
TGAACAGGGAATTTCTGTGG+AGG | 0.603671 | 1.3:+76738210 | MS.gene056274:intron |
AAACACATAAGGTCTACGAC+TGG | 0.605568 | 1.3:+76738352 | MS.gene056274:CDS |
CACTTGGTGCCATAGGCGAG+GGG | 0.605861 | 1.3:+76743273 | MS.gene056274:CDS |
GTGATTTGGCTAGGTGTGTG+TGG | 0.606145 | 1.3:+76747276 | MS.gene056274:intron |
CAAGGACGCAGATGAAGAAG+TGG | 0.606775 | 1.3:+76741742 | MS.gene056274:CDS |
CAGCATCATATACAATTCTG+AGG | 0.609698 | 1.3:-76745004 | None:intergenic |
CACGGGAGAAGATGAAGATG+AGG | 0.610536 | 1.3:-76737242 | None:intergenic |
ACATTAAACTTACTCGAGCA+AGG | 0.610835 | 1.3:-76747048 | None:intergenic |
TGATAATAAGCGTGTACAGG+AGG | 0.610882 | 1.3:+76744606 | MS.gene056274:CDS |
ATGACGATGTTGTCAACACA+TGG | 0.610953 | 1.3:+76742816 | MS.gene056274:CDS |
TCGATCACATTCCTTAGATG+TGG | 0.611334 | 1.3:-76741701 | None:intergenic |
GCTCCAATGCAGACATACAC+TGG | 0.614134 | 1.3:-76751188 | None:intergenic |
TGATACGAAGTATTTCATGC+TGG | 0.614417 | 1.3:+76744020 | MS.gene056274:CDS |
AGTGATTTAAATCACATGGA+AGG | 0.616174 | 1.3:+76738460 | MS.gene056274:CDS |
GTCCAAACCTCCAAGATAGA+CGG | 0.620276 | 1.3:-76741280 | None:intergenic |
ACTTCCGCACTTCTGCAGTA+GGG | 0.623309 | 1.3:-76740830 | None:intergenic |
TGTTGCAAAAGCAGAACAAG+CGG | 0.625501 | 1.3:-76744629 | None:intergenic |
CAATAGGCATCAGAGTAGGA+AGG | 0.628208 | 1.3:-76742901 | None:intergenic |
TAGGGTATCGGGCATCCCAA+GGG | 0.630072 | 1.3:+76744532 | MS.gene056274:intron |
AACCTTGATACATGAAATCG+AGG | 0.630250 | 1.3:-76742601 | None:intergenic |
AAGTCTGCCAGGTCTTGCAT+GGG | 0.631867 | 1.3:+76750902 | MS.gene056274:CDS |
AGCTGGGGCTCAGTATGACA+AGG | 0.634404 | 1.3:+76746059 | MS.gene056274:CDS |
TCGTGGCAACCACAAGAGCA+AGG | 0.637116 | 1.3:+76737099 | MS.gene056274:CDS |
TAGAACCTTAGCCAATGTCT+GGG | 0.646402 | 1.3:-76745842 | None:intergenic |
AGCTTTCTTAATGAAGCGTG+AGG | 0.646529 | 1.3:-76740608 | None:intergenic |
CAGGCCAAGTTGTCAACCGT+CGG | 0.648622 | 1.3:+76743212 | MS.gene056274:intron |
TGCATGAAATGCTCCATATG+TGG | 0.649161 | 1.3:-76749576 | None:intergenic |
TGAATCGCTTATTGAAGCCG+AGG | 0.649193 | 1.3:+76742370 | MS.gene056274:CDS |
TTTATGCACCTCCTAAACAC+AGG | 0.650495 | 1.3:-76745808 | None:intergenic |
ACCAATTCTTCAGCATGCAG+AGG | 0.652188 | 1.3:+76749393 | MS.gene056274:CDS |
AGAATGAAGATACCTGAGCA+CGG | 0.654486 | 1.3:-76737260 | None:intergenic |
GTATATGTTGCAAGTCAACA+AGG | 0.659849 | 1.3:+76741724 | MS.gene056274:CDS |
CAAGAATTTCAGACAAACGA+GGG | 0.660281 | 1.3:-76747309 | None:intergenic |
TTTGCTTTCTGGACTAACAG+AGG | 0.661941 | 1.3:+76746104 | MS.gene056274:CDS |
TCAACAATAGGCATCAGAGT+AGG | 0.667528 | 1.3:-76742905 | None:intergenic |
TCAAGAATTTCAGACAAACG+AGG | 0.668611 | 1.3:-76747310 | None:intergenic |
GGTGCATCAGGCTATTTCCG+TGG | 0.668981 | 1.3:+76747442 | MS.gene056274:CDS |
CATGAAATACTTCGTATCAG+GGG | 0.669623 | 1.3:-76744016 | None:intergenic |
AGCGAACTTAGAGCTCCAGA+AGG | 0.670498 | 1.3:-76750734 | None:intergenic |
ATAGTGCAATAACACTGGGG+AGG | 0.677121 | 1.3:+76749523 | MS.gene056274:CDS |
TGCCACTTCTCAATTAACGG+TGG | 0.677949 | 1.3:-76745187 | None:intergenic |
ACTGTCCAAGCAACTTACAA+GGG | 0.681669 | 1.3:-76738437 | None:intergenic |
TATATCTGAAGAATAACCTG+AGG | 0.683811 | 1.3:+76738251 | MS.gene056274:CDS |
ACATCGGTGTCAAGAATTTG+GGG | 0.688752 | 1.3:-76740421 | None:intergenic |
TTTAATATGATTTCCAAGCG+CGG | 0.689897 | 1.3:-76744784 | None:intergenic |
TCTTTATCCTCATCTGCCAG+AGG | 0.693093 | 1.3:+76743307 | MS.gene056274:CDS |
ATGACCCTACTGCAGAAGTG+CGG | 0.693454 | 1.3:+76740826 | MS.gene056274:CDS |
ATGTACCAGGCTTAGCAGAG+CGG | 0.696873 | 1.3:+76740440 | MS.gene056274:CDS |
AAACCTCCAAGATAGACGGA+CGG | 0.697580 | 1.3:-76741276 | None:intergenic |
ATTGACAGAGCATTGCACCA+AGG | 0.701124 | 1.3:-76749600 | None:intergenic |
CGGCGGCGGTGACACCATCG+TGG | 0.714804 | 1.3:+76737082 | MS.gene056274:CDS |
AGGCTTACTGGAATAAGACG+GGG | 0.733611 | 1.3:-76742234 | None:intergenic |
CCAAATCTGAGACTTATCAG+CGG | 0.743479 | 1.3:-76737175 | None:intergenic |
AAAATAGTGCAATAACACTG+GGG | 0.776697 | 1.3:+76749520 | MS.gene056274:CDS |
AAACTGGAGGAGTTTCACAG+TGG | 0.779982 | 1.3:+76738398 | MS.gene056274:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 76737078 | 76751248 | 76737078 | ID=MS.gene056274 |
chr1.3 | mRNA | 76737078 | 76751248 | 76737078 | ID=MS.gene056274.t1;Parent=MS.gene056274 |
chr1.3 | exon | 76737078 | 76737269 | 76737078 | ID=MS.gene056274.t1.exon1;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76737078 | 76737269 | 76737078 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76738217 | 76738504 | 76738217 | ID=MS.gene056274.t1.exon2;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76738217 | 76738504 | 76738217 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76740406 | 76740495 | 76740406 | ID=MS.gene056274.t1.exon3;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76740406 | 76740495 | 76740406 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76740596 | 76740673 | 76740596 | ID=MS.gene056274.t1.exon4;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76740596 | 76740673 | 76740596 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76740774 | 76740854 | 76740774 | ID=MS.gene056274.t1.exon5;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76740774 | 76740854 | 76740774 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76741244 | 76741294 | 76741244 | ID=MS.gene056274.t1.exon6;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76741244 | 76741294 | 76741244 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76741701 | 76741786 | 76741701 | ID=MS.gene056274.t1.exon7;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76741701 | 76741786 | 76741701 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76742182 | 76742248 | 76742182 | ID=MS.gene056274.t1.exon8;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76742182 | 76742248 | 76742182 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76742335 | 76742391 | 76742335 | ID=MS.gene056274.t1.exon9;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76742335 | 76742391 | 76742335 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76742488 | 76742517 | 76742488 | ID=MS.gene056274.t1.exon10;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76742488 | 76742517 | 76742488 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76742592 | 76742651 | 76742592 | ID=MS.gene056274.t1.exon11;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76742592 | 76742651 | 76742592 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76742812 | 76742928 | 76742812 | ID=MS.gene056274.t1.exon12;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76742812 | 76742928 | 76742812 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76743215 | 76743328 | 76743215 | ID=MS.gene056274.t1.exon13;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76743215 | 76743328 | 76743215 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76743977 | 76744075 | 76743977 | ID=MS.gene056274.t1.exon14;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76743977 | 76744075 | 76743977 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76744535 | 76744660 | 76744535 | ID=MS.gene056274.t1.exon15;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76744535 | 76744660 | 76744535 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76744763 | 76744837 | 76744763 | ID=MS.gene056274.t1.exon16;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76744763 | 76744837 | 76744763 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76744996 | 76745067 | 76744996 | ID=MS.gene056274.t1.exon17;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76744996 | 76745067 | 76744996 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76745163 | 76745273 | 76745163 | ID=MS.gene056274.t1.exon18;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76745163 | 76745273 | 76745163 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76745775 | 76745858 | 76745775 | ID=MS.gene056274.t1.exon19;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76745775 | 76745858 | 76745775 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76746045 | 76746152 | 76746045 | ID=MS.gene056274.t1.exon20;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76746045 | 76746152 | 76746045 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76746956 | 76747057 | 76746956 | ID=MS.gene056274.t1.exon21;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76746956 | 76747057 | 76746956 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76747289 | 76747351 | 76747289 | ID=MS.gene056274.t1.exon22;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76747289 | 76747351 | 76747289 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76747431 | 76747505 | 76747431 | ID=MS.gene056274.t1.exon23;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76747431 | 76747505 | 76747431 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76749343 | 76749414 | 76749343 | ID=MS.gene056274.t1.exon24;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76749343 | 76749414 | 76749343 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76749498 | 76749622 | 76749498 | ID=MS.gene056274.t1.exon25;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76749498 | 76749622 | 76749498 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76750587 | 76750638 | 76750587 | ID=MS.gene056274.t1.exon26;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76750587 | 76750638 | 76750587 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76750722 | 76750790 | 76750722 | ID=MS.gene056274.t1.exon27;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76750722 | 76750790 | 76750722 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76750874 | 76750933 | 76750874 | ID=MS.gene056274.t1.exon28;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76750874 | 76750933 | 76750874 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
chr1.3 | exon | 76751165 | 76751248 | 76751165 | ID=MS.gene056274.t1.exon29;Parent=MS.gene056274.t1 |
chr1.3 | CDS | 76751165 | 76751248 | 76751165 | ID=cds.MS.gene056274.t1;Parent=MS.gene056274.t1 |
Gene Sequence |
Protein sequence |