AlfalfaGEDB | MS.gene056320

M. sativa cultivar XinJiangDaYe / MS.gene056320

KEGG: K08867
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056320.t1	XP_003616019.1	98.6	568	6	1	1	566	8	575	9.40E-302	1045.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056320.t1	Q9SCU5	67.2	408	126	3	10	409	15	422	2.4e-157	557.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056320.t1	G7K0S2	98.6	568	6	1	1	566	8	575	6.8e-302	1045.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene056320	MS.gene26274	0.855303	6.91E-62	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene025787	MS.gene056320	PPI
MS.gene056320	MS.gene09948	PPI
MS.gene056320	MS.gene015458	PPI
MS.gene21145	MS.gene056320	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056320.t1	MTR_5g075220	98.415	568	7	1	1	566	8	575	0.0	1165
MS.gene056320.t1	MTR_6g016260	66.489	564	160	6	20	566	6	557	0.0	704
MS.gene056320.t1	MTR_7g072860	50.850	588	244	12	10	562	18	595	0.0	560
MS.gene056320.t1	MTR_7g072640	50.850	588	244	12	10	562	18	595	0.0	560
MS.gene056320.t1	MTR_4g028830	51.888	609	227	12	10	562	14	612	0.0	530
MS.gene056320.t1	MTR_1g103850	54.588	425	153	7	6	393	10	431	3.72e-157	466
MS.gene056320.t1	MTR_7g114680	54.118	425	152	5	10	393	14	436	9.42e-157	466
MS.gene056320.t1	MTR_1g081330	54.545	429	148	7	10	394	14	439	1.56e-156	466
MS.gene056320.t1	MTR_7g114680	53.269	413	150	5	22	393	12	422	1.45e-147	442
MS.gene056320.t1	MTR_3g076650	56.443	388	161	4	10	390	16	402	3.22e-144	429

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056320.t1	AT5G58350	56.993	572	212	8	10	565	9	562	0.0	610
MS.gene056320.t1	AT3G51630	55.495	546	199	6	10	546	15	525	0.0	576
MS.gene056320.t1	AT3G51630	55.495	546	199	6	10	546	15	525	0.0	576
MS.gene056320.t1	AT5G28080	53.162	427	152	4	10	390	15	439	5.99e-156	456
MS.gene056320.t1	AT3G48260	55.556	396	158	4	2	389	4	389	8.43e-152	446
MS.gene056320.t1	AT3G22420	52.009	423	175	7	2	399	5	424	2.24e-151	446
MS.gene056320.t1	AT3G22420	52.009	423	175	7	2	399	76	495	7.64e-151	447
MS.gene056320.t1	AT3G22420	48.458	454	176	7	2	399	5	456	7.16e-146	434
MS.gene056320.t1	AT3G22420	48.889	450	175	8	2	399	5	451	1.77e-145	432
MS.gene056320.t1	AT3G22420	48.889	450	175	8	2	399	76	522	9.03e-145	433

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Find 106 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGGAACTACTATTCTA+TGG	0.355904	5.3:-59865199	MS.gene056320:CDS
AAAGCAATTGATGAGGTGCT+TGG	0.509901	5.3:-59867433	MS.gene056320:CDS
AAATCTGAGGAAATATCGCA+CGG	0.644058	5.3:-59865688	MS.gene056320:CDS
AACACCGGAGTTCATGGCAC+CGG	0.601512	5.3:-59866616	MS.gene056320:CDS
AACCATTGTAAAATTGTAGG+AGG	0.552259	5.3:-59865108	MS.gene056320:CDS
AACTGAGTGATGAATTTCAA+AGG	0.555594	5.3:-59866180	MS.gene056320:CDS
AAGAATTGGAGATTTCTGAT+TGG	0.452979	5.3:-59865903	MS.gene056320:CDS
AAGCAATAAAGAGCTGGGCG+CGG	0.591962	5.3:-59867003	MS.gene056320:CDS
AATGGAGATGGTAAAAGAAT+TGG	0.394174	5.3:-59865917	MS.gene056320:CDS
ACCCTACCATAGCGACCAGT+TGG	0.534664	5.3:+59867923	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTGGAACTACTATTCTA+TGG	-	chr5.3:59867684-59867703	MS.gene056320:intron	30.0%
AACCATTGTAAAATTGTAGG+AGG	-	chr5.3:59867775-59867794	MS.gene056320:intron	30.0%
AACTGAGTGATGAATTTCAA+AGG	-	chr5.3:59866703-59866722	MS.gene056320:intron	30.0%
AAGAATTGGAGATTTCTGAT+TGG	-	chr5.3:59866980-59866999	MS.gene056320:CDS	30.0%
AATGGAGATGGTAAAAGAAT+TGG	-	chr5.3:59866966-59866985	MS.gene056320:CDS	30.0%
AGAAAGATAGTATCATCTTC+AGG	+	chr5.3:59866759-59866778	None:intergenic	30.0%
AGAATTGGAGATTTCTGATT+GGG	-	chr5.3:59866981-59867000	MS.gene056320:CDS	30.0%
AGTATCAGTGAGAATATCAA+AGG	+	chr5.3:59866932-59866951	None:intergenic	30.0%
ATATTAATGCAGGTTCTGTT+AGG	-	chr5.3:59866893-59866912	MS.gene056320:CDS	30.0%
ATATTTGTCAATGGTCATCT+TGG	-	chr5.3:59865978-59865997	MS.gene056320:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	59864918	59867987	59864918	ID=MS.gene056320
chr5.3	mRNA	59864918	59867987	59864918	ID=MS.gene056320.t1;Parent=MS.gene056320
chr5.3	exon	59867925	59867987	59867925	ID=MS.gene056320.t1.exon1;Parent=MS.gene056320.t1
chr5.3	CDS	59867925	59867987	59867925	ID=cds.MS.gene056320.t1;Parent=MS.gene056320.t1
chr5.3	exon	59867232	59867497	59867232	ID=MS.gene056320.t1.exon2;Parent=MS.gene056320.t1
chr5.3	CDS	59867232	59867497	59867232	ID=cds.MS.gene056320.t1;Parent=MS.gene056320.t1
chr5.3	exon	59866834	59867057	59866834	ID=MS.gene056320.t1.exon3;Parent=MS.gene056320.t1
chr5.3	CDS	59866834	59867057	59866834	ID=cds.MS.gene056320.t1;Parent=MS.gene056320.t1
chr5.3	exon	59866482	59866639	59866482	ID=MS.gene056320.t1.exon4;Parent=MS.gene056320.t1
chr5.3	CDS	59866482	59866639	59866482	ID=cds.MS.gene056320.t1;Parent=MS.gene056320.t1
chr5.3	exon	59866101	59866404	59866101	ID=MS.gene056320.t1.exon5;Parent=MS.gene056320.t1
chr5.3	CDS	59866101	59866404	59866101	ID=cds.MS.gene056320.t1;Parent=MS.gene056320.t1
chr5.3	exon	59865671	59866000	59865671	ID=MS.gene056320.t1.exon6;Parent=MS.gene056320.t1
chr5.3	CDS	59865671	59866000	59865671	ID=cds.MS.gene056320.t1;Parent=MS.gene056320.t1
chr5.3	exon	59864918	59865273	59864918	ID=MS.gene056320.t1.exon7;Parent=MS.gene056320.t1
chr5.3	CDS	59864918	59865273	59864918	ID=cds.MS.gene056320.t1;Parent=MS.gene056320.t1

Gene Sequence

>MS.gene056320

ATGGAGGAATTCAAGGAAGAGAATCTTTATGTGGAAACTGATCCAACTGGTCGCTATGGTAGGGTAAGTTCTAAAATACTCTGTTTTCTCTCTGTTTTTCCTCTGTTTCTTGTGACATGTGTTATAGTATATCATTCAAGTTTTAGTATGTTATTTGTGTTACATAAGTATGTTGTTTTACAAGAAACATGTTTTTTTCTTTTCATTTTTGTGCACATGGTTAGTGTTGTAAGATATGTTAAGCAATTTGCTATATTGTTATTAGGTTTATTAAGATAATTTTAAATTGGACCGTGTCGCGATCTTTGATATTATAGAGAGCAGTCGAATGATACTAATGTGACCGTCTTAACAGCGGTTGCAGAGACATCAAAAACTTTATACCGTGATACTGATTACATACCGTTTGTTTAGAACCATGATTGAAAGAAACTGTCTCATATAACGGAATTAATGTGACAAATATTGTGTGTTCTGTGTGATTGATTAGTTTGGAGATGTTCTTGGAAAAGGGGCAATGAAGACAGTGTACAAAGCAATTGATGAGGTGCTTGGAATAGAGGTAGCATGGAACCAAGTCAGACTCAACGAGGTACTAAACACGCCAGACGATTTACAGCGCCTTTATTCGGAGGTTCATCTCCTAAGCACACTCAAGCACCGGTCGATCATGCGATTCTACACATCTTGGATTGATATTGATAACAAGAACTTCAACTTTGTTACAGAAATGTTCACATCAGGCTCACTGAGAGAGTAATTTTCTTTCTATATATGAAATTTCATGACATGCACCTTATGAAAACGCGAAATATTTCATTTCTGTTATGCTTATATGAATGTGATCATCAATAACTAAAATTTGAGAATATTAATTCCTGTCTTGTTATCTCTTTGATGAAATAATTGACAATTTTCGAACACGTCCAGGTACCGGAGGAAATATAAGCGAGTAAGTTTACAAGCAATAAAGAGCTGGGCGCGGCAAATCTTACAAGGGCTAGTTTATTTACATGGCCATGATCCACCTGTAATCCATAGGGACCTAAAATGTGATAACATATTTGTCAATGGTCATCTTGGACAAGTGAAAATTGGTGACCTTGGACTAGCTGCAATTCTCCAAGGTTCTCAATCAGCTCATAGTGTTATAGGTACTTACATTTTAGCCAATGACTTTCAATGTTGCAAACTAAACATCGGTATATTAATTGTTATGTTAGTATTTTCTCTTTCACGAGGGTTTGCACTCCGATCATTCAACTCCTTTAATATCGAGCTAAAATCAGTTAAGCTACACTGCTATTATATTTATATATTTTGAATCAAAAATTTCTTATTGTCTTAGGAACACCGGAGTTCATGGCACCGGAAATGTACGAGGAAGAATACAATGAACTTGCTGATGTTTACTCATTTGGCATGTGTGTATTGGAAATGCTCACATCTGATTATCCATATAGTGAATGTACTAATCCAGCACAGATATACAAGAAAGTGACATCGGTATATTCACATTCTTGTTTAGATGTCACGATATCAGTAAAATTTGATGTTTTATTAAGTAAACATTTCTGTTTTAGGGCAAGCTACCAATGTCATTTTTCCGCATTGAAGATGGGGAAGCGCGGAGATTCATCGGAAAATGTTTAGAACCTGCAGCAAAGAGACCATCAGCGAAAGATTTGTTGCTTGAGCCTTTTCTTTCAACGGATGATACATCATCAGCAATGAAGTTAAAAATTCAGAAGCCGTTTTTGAATGAAAATGAGATGGAAAAACTTCAACTGAGTGATGAATTTCAAAGGACTGAAATGAAAGTCATAGGAAAGTTGAATCCTGAAGATGATACTATCTTTCTCAAAGTACAAATTTCTGATAAGAAATGTATGTATACTTTACAGAAATTTCTGCACATAGAAGGAATTTGACTATGATATATATATATACTTTACCTAACAATATTTTCTTCTTCATATTAATGCAGGTTCTGTTAGGAATGTATATTTTCCCTTTGATATTCTCACTGATACTCCCATTGATGTTGCAATGGAGATGGTAAAAGAATTGGAGATTTCTGATTGGGATCCTTTTGATATTGCAAATATGATCAATAGAGAGATATCTGCTCTTCTACCACATAGATGGAAAAATGATTACTCAGATTCCTTCCATACATTCAGTTATCAAGATGATGATGTCGATGAATCTCGTCTTCATTTCCGCTCGATCTCTTCTTCTTCATCGTTACATGAATCAATACCGGATTTTGTCAGTAAATCTGAGGAAATATCGCACGGATATTATTTGCTCCATGGTATGTCTTTTTTCTCTCCATTTCCATCCTTTTTCCTGACAGGCCTATATTTTGAAATGCATTATACAGTTTTAGTAGTTTGTGTAACTACATTGCGACCGTAATTGTGACGAACTAAAAACACGCCACTTTTGTATTTTACAAGGACTAGATTAAGTGTGTATAAGCTATTTATATAACAAAAGATTAAATAAAGTCAAATTGTTTTCATATAAGTTATAAATTGTTTCCACAAACTCATCCAAACATTCTCACAAGTGCGTATATCGGTAGATAAGTTCAAATAAGACAATACAAACAAGCTCTAGTACAGTTACATTAATAATCTTGTAAGAGATAAATGTTGGTTTAACTATTTTTTTAGTCTCCATGATAACATACAAAACTTTTGTTGCAGATGATTTGTATGATGATAACAGTTCAAGATGCTCTTCACAAGGGACATATTCAAACTGGAACTACTATTCTATGGATGACCATGAACACAATATAGCCTCAATCAGAAAAGATAAGCTTCCCATCATGAAGAGTCACAATTGCAACCATTGTAAAATTGTAGGAGGATCACAGAATTGTTCATCAAGTAAGATGGTGATGGATAATCGAAAACTGACTCGGAATAAGTCTCTGATCGATACGCGGAGCCAATTGTTACACAGATCACTGGTTGATGAGTTGATCAAAAGAAGGCAAGTCAAGACAGTTGGTGCTGTGGAGAATATTGGATTTCAGTCACCGTATGATGTTAAATAG

Protein sequence

>MS.gene056320.t1

MEEFKEENLYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEVLNTPDDLQRLYSEVHLLSTLKHRSIMRFYTSWIDIDNKNFNFVTEMFTSGSLREYRRKYKRVSLQAIKSWARQILQGLVYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILQGSQSAHSVIGTPEFMAPEMYEEEYNELADVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGKLPMSFFRIEDGEARRFIGKCLEPAAKRPSAKDLLLEPFLSTDDTSSAMKLKIQKPFLNENEMEKLQLSDEFQRTEMKVIGKLNPEDDTIFLKVQISDKKCSVRNVYFPFDILTDTPIDVAMEMVKELEISDWDPFDIANMINREISALLPHRWKNDYSDSFHTFSYQDDDVDESRLHFRSISSSSSLHESIPDFVSKSEEISHGYYLLHDDLYDDNSSRCSSQGTYSNWNYYSMDDHEHNIASIRKDKLPIMKSHNCNHCKIVGGSQNCSSSKMVMDNRKLTRNKSLIDTRSQLLHRSLVDELIKRRQVKTVGAVENIGFQSPYDVK