Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056371.t1 | XP_013456287.1 | 96.1 | 973 | 38 | 0 | 1 | 973 | 1 | 973 | 0.00E+00 | 1824.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056371.t1 | Q6C8F7 | 26.6 | 143 | 99 | 3 | 29 | 168 | 6 | 145 | 2.1e-07 | 59.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056371.t1 | A0A072UMN5 | 96.1 | 973 | 38 | 0 | 1 | 973 | 1 | 973 | 0.0e+00 | 1824.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056371 | MS.gene28347 | 0.846201 | 2.52E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene056371 | MS.gene68267 | PPI |
MS.gene025598 | MS.gene056371 | PPI |
MS.gene056371 | MS.gene54899 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056371.t1 | MTR_4g067110 | 96.095 | 973 | 38 | 0 | 1 | 973 | 1 | 973 | 0.0 | 1935 |
MS.gene056371.t1 | MTR_2g098850 | 70.415 | 987 | 260 | 5 | 1 | 973 | 1 | 969 | 0.0 | 1406 |
MS.gene056371.t1 | MTR_2g098850 | 69.605 | 987 | 248 | 5 | 1 | 973 | 1 | 949 | 0.0 | 1384 |
MS.gene056371.t1 | MTR_4g039320 | 42.830 | 1060 | 487 | 23 | 1 | 973 | 1 | 1028 | 0.0 | 799 |
MS.gene056371.t1 | MTR_7g091780 | 43.824 | 1020 | 490 | 20 | 2 | 973 | 6 | 990 | 0.0 | 781 |
MS.gene056371.t1 | MTR_1g084090 | 33.141 | 1038 | 588 | 21 | 1 | 973 | 1 | 997 | 1.87e-174 | 534 |
MS.gene056371.t1 | MTR_1g082810 | 48.315 | 89 | 46 | 0 | 49 | 137 | 11 | 99 | 4.38e-21 | 89.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056371.t1 | AT1G05960 | 54.138 | 1003 | 409 | 14 | 1 | 973 | 1 | 982 | 0.0 | 1006 |
MS.gene056371.t1 | AT1G05960 | 54.138 | 1003 | 409 | 14 | 1 | 973 | 1 | 982 | 0.0 | 1006 |
MS.gene056371.t1 | AT1G05960 | 54.138 | 1003 | 409 | 14 | 1 | 973 | 1 | 982 | 0.0 | 1006 |
MS.gene056371.t1 | AT1G05960 | 52.930 | 1024 | 410 | 15 | 1 | 973 | 1 | 1003 | 0.0 | 992 |
MS.gene056371.t1 | AT2G41830 | 42.433 | 1044 | 505 | 23 | 2 | 973 | 6 | 1025 | 0.0 | 772 |
MS.gene056371.t1 | AT2G41830 | 39.278 | 914 | 459 | 23 | 132 | 973 | 1 | 890 | 0.0 | 584 |
MS.gene056371.t1 | AT5G21080 | 54.438 | 507 | 224 | 3 | 1 | 500 | 1 | 507 | 0.0 | 572 |
MS.gene056371.t1 | AT5G21080 | 37.019 | 416 | 202 | 13 | 583 | 970 | 635 | 1018 | 5.24e-53 | 201 |
MS.gene056371.t1 | AT5G26850 | 35.490 | 1020 | 570 | 21 | 1 | 972 | 1 | 980 | 7.62e-180 | 548 |
MS.gene056371.t1 | AT5G26850 | 35.490 | 1020 | 570 | 21 | 1 | 972 | 1 | 980 | 7.62e-180 | 548 |
MS.gene056371.t1 | AT5G26850 | 35.490 | 1020 | 570 | 21 | 1 | 972 | 1 | 980 | 7.62e-180 | 548 |
MS.gene056371.t1 | AT5G26850 | 35.490 | 1020 | 570 | 21 | 1 | 972 | 1 | 980 | 7.62e-180 | 548 |
Find 227 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAGGGATGCTTTAATTAT+TGG | 0.142650 | 4.1:-34185845 | None:intergenic |
CTGACTCTTGTGGCAGGGAC+TGG | 0.143185 | 4.1:+34182670 | MS.gene056371:CDS |
GTCTCTTGCTTTCTTCAATC+TGG | 0.151994 | 4.1:+34184251 | MS.gene056371:CDS |
CTATCTTCTGTTGTCCATTT+TGG | 0.180959 | 4.1:+34183095 | MS.gene056371:CDS |
AATGGGACCTCCATTGTTTA+TGG | 0.219448 | 4.1:+34186971 | MS.gene056371:CDS |
AACTAACTGTTGAATATATC+AGG | 0.226689 | 4.1:-34185862 | None:intergenic |
ATATGTTCAACTTACCTTCT+TGG | 0.226797 | 4.1:-34185151 | None:intergenic |
CAGCCACAAATTATCCTTCT+TGG | 0.232775 | 4.1:-34182650 | None:intergenic |
TCCTCTTTGGGAAATTCCTT+GGG | 0.238244 | 4.1:-34182607 | None:intergenic |
CAGTGTGAGGCTCTTGTATC+AGG | 0.239099 | 4.1:+34187487 | MS.gene056371:CDS |
TGACTCTTGTGGCAGGGACT+GGG | 0.253799 | 4.1:+34182671 | MS.gene056371:CDS |
AATCAATGGTCTTCTGAAAA+AGG | 0.254614 | 4.1:+34182926 | MS.gene056371:CDS |
GGGAAATTCCTTGGGGTGAT+TGG | 0.270431 | 4.1:-34182599 | None:intergenic |
TGAAAGCTGCTGGATGTTAA+TGG | 0.286853 | 4.1:+34188288 | MS.gene056371:CDS |
AGTTTCCCCTCTACCAATTA+AGG | 0.292504 | 4.1:+34187597 | MS.gene056371:CDS |
TGTTAAAGAGCCGTCCTCTT+TGG | 0.296797 | 4.1:-34182620 | None:intergenic |
TGTGGCTTCGGCGGCTTTGA+TGG | 0.299735 | 4.1:+34187136 | MS.gene056371:CDS |
TAGCTGCAGTTTCCAGTATT+GGG | 0.304149 | 4.1:+34183283 | MS.gene056371:CDS |
GTCCTCTTTGGGAAATTCCT+TGG | 0.314480 | 4.1:-34182608 | None:intergenic |
CTCCCTCATGAGCATTTCAT+TGG | 0.314688 | 4.1:+34185127 | MS.gene056371:CDS |
GCTTTCTTCAATCTGGGTTC+AGG | 0.315779 | 4.1:+34184258 | MS.gene056371:CDS |
AAATTTACCTCATCAAAATC+TGG | 0.317492 | 4.1:-34187035 | None:intergenic |
GACAGATTTCCACTTGGTTC+AGG | 0.319543 | 4.1:-34187173 | None:intergenic |
AAAGGCTTGCTTGTATAATA+TGG | 0.324194 | 4.1:+34182832 | MS.gene056371:CDS |
CTGTGGTTAGGTGCGTTTCA+TGG | 0.325394 | 4.1:+34182302 | MS.gene056371:intron |
TACATACATGTTCAATTTAG+AGG | 0.325825 | 4.1:+34182073 | MS.gene056371:CDS |
CCTCACACTGGTTCTTCATT+TGG | 0.326955 | 4.1:-34187474 | None:intergenic |
ATCCAAGTGCTTGACCAAAA+TGG | 0.334685 | 4.1:-34183109 | None:intergenic |
TGAGCCAATTGACACAGTTT+AGG | 0.338299 | 4.1:-34182104 | None:intergenic |
GTGTCAATTGGCTCAAGAAA+TGG | 0.343671 | 4.1:+34182112 | MS.gene056371:CDS |
CTGGGTTCAGGCAACATCTA+TGG | 0.343765 | 4.1:+34184270 | MS.gene056371:CDS |
AGGGACTGGGGTAGACTCTA+TGG | 0.357725 | 4.1:+34182684 | MS.gene056371:CDS |
CCAATTCGTGTTTCGTGGTC+AGG | 0.359383 | 4.1:-34183739 | None:intergenic |
ATAGATCATGTTAGTGACTT+TGG | 0.359929 | 4.1:+34182549 | MS.gene056371:intron |
GTTAAAGAGCCGTCCTCTTT+GGG | 0.361240 | 4.1:-34182619 | None:intergenic |
TGGGGTGATTGGAGCTAGAT+TGG | 0.362239 | 4.1:-34182588 | None:intergenic |
CTTGTATAATATGGTCAAAC+TGG | 0.366128 | 4.1:+34182841 | MS.gene056371:CDS |
TTGTAACATACACATTTCTA+AGG | 0.367535 | 4.1:-34183343 | None:intergenic |
TCCACAGACATCCAGTTACT+TGG | 0.369843 | 4.1:+34185076 | MS.gene056371:intron |
GAAAAGCTGTAAATACGATA+TGG | 0.377200 | 4.1:-34183964 | None:intergenic |
TGCCGCTATTAAGTCACTTT+CGG | 0.378406 | 4.1:+34186119 | MS.gene056371:CDS |
GACCAAATATTCAAAATTAC+CGG | 0.380879 | 4.1:+34186194 | MS.gene056371:CDS |
TAGGGGCAGAACAGATCAAT+AGG | 0.383284 | 4.1:+34183884 | MS.gene056371:CDS |
TCTTACGAAAGCCAAGTAAC+TGG | 0.383620 | 4.1:-34185087 | None:intergenic |
TGTCAATTGGCTCAAGAAAT+GGG | 0.383681 | 4.1:+34182113 | MS.gene056371:CDS |
TCTCTTGCTTTCTTCAATCT+GGG | 0.383800 | 4.1:+34184252 | MS.gene056371:CDS |
TGGTTCTTCATTTGGTCATA+AGG | 0.384205 | 4.1:-34187466 | None:intergenic |
TGTGCAGACACTGGAGTATT+CGG | 0.387464 | 4.1:+34188139 | MS.gene056371:intron |
AGCTTTCAAGAATTTATCAT+AGG | 0.388126 | 4.1:-34188273 | None:intergenic |
TTGTTTCTAGATTGTGGCTT+CGG | 0.388255 | 4.1:+34187124 | MS.gene056371:intron |
CCGACCTCATTAAGCACTTA+AGG | 0.388667 | 4.1:+34183244 | MS.gene056371:CDS |
CCTGACCACGAAACACGAAT+TGG | 0.390664 | 4.1:+34183739 | MS.gene056371:CDS |
GAATCAGAGAAGATAATCTA+TGG | 0.396697 | 4.1:+34186078 | MS.gene056371:CDS |
TATTCCTAAACTGTGTCAAT+TGG | 0.399534 | 4.1:+34182100 | MS.gene056371:CDS |
TCATAAGGTACAGGATTTGC+AGG | 0.399980 | 4.1:-34187451 | None:intergenic |
CTGACCACGAAACACGAATT+GGG | 0.400617 | 4.1:+34183740 | MS.gene056371:CDS |
GGGAACTCAATCTGAGCAAC+TGG | 0.401860 | 4.1:-34187014 | None:intergenic |
TTAGCTGCAGTTTCCAGTAT+TGG | 0.405516 | 4.1:+34183282 | MS.gene056371:CDS |
GATAAATTCTTGAAAGCTGC+TGG | 0.405792 | 4.1:+34188278 | MS.gene056371:CDS |
GCTTTGATGGACGAAGAGAC+TGG | 0.407414 | 4.1:+34187149 | MS.gene056371:CDS |
ATCACATCTTTCAATGGACT+TGG | 0.413254 | 4.1:+34182332 | MS.gene056371:CDS |
AGGACCCATCCTTGATTTGA+TGG | 0.413478 | 4.1:+34183460 | MS.gene056371:CDS |
GTAGTTTATTAGAGATTGTT+CGG | 0.415919 | 4.1:+34181614 | MS.gene056371:CDS |
ATACTCGTCATTCCCAATAC+TGG | 0.419702 | 4.1:-34183295 | None:intergenic |
GATTAACGCTTAAAATCGTC+AGG | 0.425004 | 4.1:-34187226 | None:intergenic |
GATTTGCGTAATGAAGTCTT+TGG | 0.428917 | 4.1:+34181040 | MS.gene056371:CDS |
TTTCCGATGCTCTAAATCTT+GGG | 0.429222 | 4.1:+34183983 | MS.gene056371:CDS |
CTGCTAAAGATCCGGCATAT+TGG | 0.430399 | 4.1:+34182807 | MS.gene056371:CDS |
AATTGATGAAACAAAGCATC+AGG | 0.430849 | 4.1:-34183697 | None:intergenic |
TCATCAATTGCTCCTGGTGA+TGG | 0.432853 | 4.1:+34183711 | MS.gene056371:CDS |
TCGTTCTAGCTCGAGACAAC+CGG | 0.435337 | 4.1:+34179990 | MS.gene056371:CDS |
ACAGATGAAATCAGGATCAT+AGG | 0.437523 | 4.1:+34181658 | MS.gene056371:CDS |
GGTACAGGATTTGCAGGAAT+GGG | 0.439740 | 4.1:-34187445 | None:intergenic |
CTCAGGTAAATTGCCTGTCT+TGG | 0.441203 | 4.1:-34185816 | None:intergenic |
TTGAGCTTGTCGATGATGTC+AGG | 0.442296 | 4.1:+34186037 | MS.gene056371:CDS |
TTAATTATTGGAATTAGCTC+AGG | 0.445901 | 4.1:-34185833 | None:intergenic |
TTCATTTGGTCATAAGGTAC+AGG | 0.451138 | 4.1:-34187460 | None:intergenic |
CCCATTGGATATGCATCATC+AGG | 0.452179 | 4.1:-34186954 | None:intergenic |
GACTCTTGTGGCAGGGACTG+GGG | 0.454897 | 4.1:+34182672 | MS.gene056371:CDS |
CAAAATGGACAACAGAAGAT+AGG | 0.456384 | 4.1:-34183094 | None:intergenic |
AACATCTATGGACGATGGCC+CGG | 0.461019 | 4.1:+34184282 | MS.gene056371:CDS |
TTGTGGCTGACTCTTGTGGC+AGG | 0.467015 | 4.1:+34182664 | MS.gene056371:CDS |
CTTATATTCTCTGCCAAGAC+AGG | 0.472578 | 4.1:+34185803 | MS.gene056371:CDS |
AAAATTCTTATCGTCATGTA+AGG | 0.472661 | 4.1:+34181093 | MS.gene056371:CDS |
TTCTTGTGATATGACACGTT+AGG | 0.474759 | 4.1:-34183575 | None:intergenic |
GCGCCCCAATTCGTGTTTCG+TGG | 0.474866 | 4.1:-34183744 | None:intergenic |
AAACTCGAACAGATGAAATC+AGG | 0.476249 | 4.1:+34181650 | MS.gene056371:CDS |
GAACAACAGGTTGGGGATGT+AGG | 0.477228 | 4.1:+34183440 | MS.gene056371:intron |
AACTTCTTGTAACGCTTCAC+CGG | 0.477865 | 4.1:-34180009 | None:intergenic |
TTACCTTAGGAATTCTCAAC+GGG | 0.485389 | 4.1:-34180774 | None:intergenic |
GTCACTTTCGGCCGTAGAGT+TGG | 0.486619 | 4.1:+34186131 | MS.gene056371:CDS |
GCTTTACGTCTCCGTTCAGC+TGG | 0.486622 | 4.1:+34182149 | MS.gene056371:CDS |
TGTGGTTAGGTGCGTTTCAT+GGG | 0.486827 | 4.1:+34182303 | MS.gene056371:intron |
GCTTTCAAGAATTTATCATA+GGG | 0.487556 | 4.1:-34188272 | None:intergenic |
TTTGTTTCATCAATTGCTCC+TGG | 0.488303 | 4.1:+34183705 | MS.gene056371:CDS |
GATTGTTGTTCTTGCTACAA+TGG | 0.492747 | 4.1:-34183513 | None:intergenic |
CGTTAATCAACTCTTAGAAT+CGG | 0.495438 | 4.1:+34187241 | MS.gene056371:CDS |
AATTTATCATAGGGGCTGGC+AGG | 0.496112 | 4.1:-34188263 | None:intergenic |
CTTGGAGCAAATATGTTACA+AGG | 0.498122 | 4.1:+34181018 | MS.gene056371:CDS |
TATGCAGATTACTGATAACT+TGG | 0.503042 | 4.1:+34181000 | MS.gene056371:intron |
CATCCTTGATTTGATGGCTG+TGG | 0.503859 | 4.1:+34183466 | MS.gene056371:CDS |
CAAGAATTTATCATAGGGGC+TGG | 0.506399 | 4.1:-34188267 | None:intergenic |
TTTCGTAAGATGTTTCCAAC+TGG | 0.507563 | 4.1:+34185100 | MS.gene056371:CDS |
AGTGACTTTGGAGAATTACA+TGG | 0.508157 | 4.1:+34182561 | MS.gene056371:CDS |
ATACTGACCTTAATTGGTAG+AGG | 0.508185 | 4.1:-34187604 | None:intergenic |
CTTTGATGGACGAAGAGACT+GGG | 0.508786 | 4.1:+34187150 | MS.gene056371:CDS |
TCATCGACAAGCTCAAGAAA+AGG | 0.509001 | 4.1:-34186030 | None:intergenic |
TCTTGTGATATGACACGTTA+GGG | 0.510444 | 4.1:-34183574 | None:intergenic |
TGTCGATGATGTCAGGCTAC+AGG | 0.515098 | 4.1:+34186044 | MS.gene056371:CDS |
CAGCAGAGGTTGCCACAGGC+AGG | 0.518782 | 4.1:-34179952 | None:intergenic |
CATAAAGAAACAACTTGCAC+AGG | 0.518963 | 4.1:+34186923 | MS.gene056371:CDS |
CAGGGATACTGCTAAAGATC+CGG | 0.519659 | 4.1:+34182799 | MS.gene056371:intron |
GGTCAGGATGAGCCATCACC+AGG | 0.522671 | 4.1:-34183723 | None:intergenic |
GCCATGGCCTCAAAATTCGC+CGG | 0.523947 | 4.1:-34184301 | None:intergenic |
CACAGCCATCAAATCAAGGA+TGG | 0.524628 | 4.1:-34183465 | None:intergenic |
CCTGATGATGCATATCCAAT+GGG | 0.525211 | 4.1:+34186954 | MS.gene056371:CDS |
CCATGGCCTCAAAATTCGCC+GGG | 0.527666 | 4.1:-34184300 | None:intergenic |
AGGTACAGGATTTGCAGGAA+TGG | 0.529133 | 4.1:-34187446 | None:intergenic |
CAGTCTGACAGATTTCCACT+TGG | 0.530024 | 4.1:-34187179 | None:intergenic |
GTTAGACCATAAAACAATGA+TGG | 0.531776 | 4.1:+34183813 | MS.gene056371:CDS |
TCCTGATGATGCATATCCAA+TGG | 0.532704 | 4.1:+34186953 | MS.gene056371:CDS |
ATAATATTAATCTGAAGGAT+AGG | 0.533027 | 4.1:-34183153 | None:intergenic |
TTTATTGTTCACTCGTTCAA+AGG | 0.535348 | 4.1:+34184342 | MS.gene056371:CDS |
TCAGAGCCTCTCCATTCAGC+AGG | 0.536677 | 4.1:+34183852 | MS.gene056371:CDS |
TACTGACCTTAATTGGTAGA+GGG | 0.537518 | 4.1:-34187603 | None:intergenic |
ATAAACAATGGAGGTCCCAT+TGG | 0.537727 | 4.1:-34186969 | None:intergenic |
AGGAGGGTTGTGCCTGCCTG+TGG | 0.537862 | 4.1:+34179940 | MS.gene056371:CDS |
GAAGCGTTACAAGAAGTTGT+TGG | 0.538026 | 4.1:+34180014 | MS.gene056371:CDS |
ACTACTGCCCCTCCTTCCAC+AGG | 0.538901 | 4.1:-34183910 | None:intergenic |
AATTTACCTCATCAAAATCT+GGG | 0.542840 | 4.1:-34187034 | None:intergenic |
TGAGCAATCACATCTTTCAA+TGG | 0.544357 | 4.1:+34182326 | MS.gene056371:CDS |
ACATACATGTTCAATTTAGA+GGG | 0.550480 | 4.1:+34182074 | MS.gene056371:CDS |
AAGGCTTCAGTTGCAATAAG+TGG | 0.553256 | 4.1:+34183213 | MS.gene056371:CDS |
AGCATTTCATTGGACCAAGA+AGG | 0.553364 | 4.1:+34185137 | MS.gene056371:CDS |
TCTCCAAGAAGGATAATTTG+TGG | 0.557351 | 4.1:+34182647 | MS.gene056371:CDS |
CCTCTTTGGGAAATTCCTTG+GGG | 0.558009 | 4.1:-34182606 | None:intergenic |
ACACCACAGCCATCAAATCA+AGG | 0.559488 | 4.1:-34183469 | None:intergenic |
TTCGGAAGGCGATCTGAAGT+TGG | 0.560737 | 4.1:+34188157 | MS.gene056371:CDS |
CTAATGCTCTAGTCTCCTGC+TGG | 0.560946 | 4.1:-34187549 | None:intergenic |
GTGGTAGTCTCAAAGAATGT+TGG | 0.562576 | 4.1:-34188241 | None:intergenic |
TTTGGAAACCGCACGGCAAG+TGG | 0.564174 | 4.1:+34187414 | MS.gene056371:CDS |
TTAAATTTAAAATAGACAGA+TGG | 0.564230 | 4.1:+34182050 | MS.gene056371:intron |
TTTCCCAAGATTTAGAGCAT+CGG | 0.566217 | 4.1:-34183986 | None:intergenic |
TGTGGCTGACTCTTGTGGCA+GGG | 0.566984 | 4.1:+34182665 | MS.gene056371:CDS |
TAATATGGTCAAACTGGCAA+GGG | 0.567973 | 4.1:+34182847 | MS.gene056371:CDS |
ATAGGAAACCTGTGGAAGGA+GGG | 0.569341 | 4.1:+34183902 | MS.gene056371:CDS |
TTTACCTTAGGAATTCTCAA+CGG | 0.569354 | 4.1:-34180775 | None:intergenic |
TTTAACAGATATCTCCAAGA+AGG | 0.573391 | 4.1:+34182636 | MS.gene056371:CDS |
TAAAACAATGATGGCTGAGA+AGG | 0.574833 | 4.1:+34183822 | MS.gene056371:CDS |
ATAATATGGTCAAACTGGCA+AGG | 0.575219 | 4.1:+34182846 | MS.gene056371:CDS |
TTTCTAGATTGTGGCTTCGG+CGG | 0.575512 | 4.1:+34187127 | MS.gene056371:intron |
TAATTTGTGGCTGACTCTTG+TGG | 0.576163 | 4.1:+34182660 | MS.gene056371:CDS |
TGTTGATAATATTAATCTGA+AGG | 0.578916 | 4.1:-34183158 | None:intergenic |
CAAGCCTTTGACCAATATGC+CGG | 0.579481 | 4.1:-34182818 | None:intergenic |
AAACCCGTTGAGAATTCCTA+AGG | 0.579527 | 4.1:+34180771 | MS.gene056371:CDS |
CTTCTTATCATCCAACTCTA+CGG | 0.583488 | 4.1:-34186142 | None:intergenic |
GCAACTGGAGAACATGTCCT+TGG | 0.584551 | 4.1:-34186999 | None:intergenic |
AAAGCAAGAGACTCACTTGG+TGG | 0.585481 | 4.1:-34184240 | None:intergenic |
TATAAGCATGTACGATGCCA+AGG | 0.585994 | 4.1:-34185786 | None:intergenic |
AGCTTTCCTGCTGAATGGAG+AGG | 0.587054 | 4.1:-34183858 | None:intergenic |
GTCAATTGGCTCAAGAAATG+GGG | 0.587894 | 4.1:+34182114 | MS.gene056371:CDS |
AAAAGAGACCTCCTGCGAGA+TGG | 0.588416 | 4.1:-34185761 | None:intergenic |
AATAGGAAACCTGTGGAAGG+AGG | 0.593531 | 4.1:+34183901 | MS.gene056371:CDS |
TAAAGCAATGCTAAAAGTGT+GGG | 0.594413 | 4.1:-34184323 | None:intergenic |
AATGCTAAAAGTGTGGGCCA+TGG | 0.594968 | 4.1:-34184317 | None:intergenic |
ACTAACTGTTGAATATATCA+GGG | 0.596910 | 4.1:-34185861 | None:intergenic |
GGTCCAATGAAATGCTCATG+AGG | 0.596995 | 4.1:-34185130 | None:intergenic |
GAGGTTTACAACCATCTCGC+AGG | 0.597698 | 4.1:+34185750 | MS.gene056371:CDS |
AGTGTGAGGCTCTTGTATCA+GGG | 0.600633 | 4.1:+34187488 | MS.gene056371:CDS |
ATAAAGCAATGCTAAAAGTG+TGG | 0.601535 | 4.1:-34184324 | None:intergenic |
CCTTAAGTGCTTAATGAGGT+CGG | 0.601671 | 4.1:-34183244 | None:intergenic |
TGACCACGAAACACGAATTG+GGG | 0.603005 | 4.1:+34183741 | MS.gene056371:CDS |
TGAATGGAGAGGCTCTGACT+TGG | 0.603434 | 4.1:-34183847 | None:intergenic |
CAGTAGTTGATGTCAGCAGT+AGG | 0.605929 | 4.1:+34183926 | MS.gene056371:CDS |
GTGATATGACACGTTAGGGA+TGG | 0.608957 | 4.1:-34183570 | None:intergenic |
TGTCTATAGTCATACGAACA+CGG | 0.609919 | 4.1:-34188218 | None:intergenic |
CTTGGTGTCTCCATAAACAA+TGG | 0.611978 | 4.1:-34186981 | None:intergenic |
GAAAACCTCACCTGATTACG+AGG | 0.612901 | 4.1:-34180048 | None:intergenic |
TAGGAAACCTGTGGAAGGAG+GGG | 0.615399 | 4.1:+34183903 | MS.gene056371:CDS |
AGCTGTAAATACGATATGGA+AGG | 0.615523 | 4.1:-34183960 | None:intergenic |
AACACAGCAGAGGTTGCCAC+AGG | 0.618662 | 4.1:-34179956 | None:intergenic |
GTGACTTTGGAGAATTACAT+GGG | 0.619470 | 4.1:+34182562 | MS.gene056371:CDS |
TTATCATAGGGGCTGGCAGG+TGG | 0.621286 | 4.1:-34188260 | None:intergenic |
ACTACAAGCTCTATCCTACA+TGG | 0.622795 | 4.1:+34182172 | MS.gene056371:CDS |
AGAACAAAGCAGTACCATGT+AGG | 0.622976 | 4.1:-34182186 | None:intergenic |
TAACGTGTCATATCACAAGA+AGG | 0.624982 | 4.1:+34183577 | MS.gene056371:CDS |
AGATCCGGCATATTGGTCAA+AGG | 0.627533 | 4.1:+34182814 | MS.gene056371:CDS |
ACTGACCTTAATTGGTAGAG+GGG | 0.629528 | 4.1:-34187602 | None:intergenic |
CTCGAGCTAGAACGAAGAGA+AGG | 0.629802 | 4.1:-34179982 | None:intergenic |
ACAGCCATCAAATCAAGGAT+GGG | 0.630952 | 4.1:-34183464 | None:intergenic |
AACTGGGGAGAAAACAGAGA+TGG | 0.631697 | 4.1:-34183793 | None:intergenic |
AAGGAATTTCCCAAAGAGGA+CGG | 0.633587 | 4.1:+34182610 | MS.gene056371:CDS |
ATCAATAGGAAACCTGTGGA+AGG | 0.638646 | 4.1:+34183898 | MS.gene056371:CDS |
ACCTCCTTAAGTGCTTAATG+AGG | 0.638798 | 4.1:-34183248 | None:intergenic |
CTTTCAAGAATTTATCATAG+GGG | 0.640709 | 4.1:-34188271 | None:intergenic |
CCCCAAGGAATTTCCCAAAG+AGG | 0.642073 | 4.1:+34182606 | MS.gene056371:CDS |
GTCCAATGAAATGCTCATGA+GGG | 0.642966 | 4.1:-34185129 | None:intergenic |
ATTGATGAAACAAAGCATCA+GGG | 0.644027 | 4.1:-34183696 | None:intergenic |
GAGCTTGTAGTCCAGCTGAA+CGG | 0.644770 | 4.1:-34182160 | None:intergenic |
TATGTTACAACTTTCAAACA+AGG | 0.645981 | 4.1:+34183356 | MS.gene056371:CDS |
ATCTAGCTCCAATCACCCCA+AGG | 0.646399 | 4.1:+34182591 | MS.gene056371:CDS |
ACAGATCAATAGGAAACCTG+TGG | 0.646808 | 4.1:+34183894 | MS.gene056371:CDS |
GTACAGGATTTGCAGGAATG+GGG | 0.647087 | 4.1:-34187444 | None:intergenic |
GTCTATAGTCATACGAACAC+GGG | 0.648189 | 4.1:-34188217 | None:intergenic |
ATAAAGAAACAACTTGCACA+GGG | 0.651476 | 4.1:+34186924 | MS.gene056371:CDS |
AGGGAAGCAACAGAAGATGT+CGG | 0.653734 | 4.1:+34187507 | MS.gene056371:CDS |
GAGAAGGACAAACACAGCAG+AGG | 0.659420 | 4.1:-34179966 | None:intergenic |
AAGAAAGCAAGAGACTCACT+TGG | 0.659869 | 4.1:-34184243 | None:intergenic |
CAAATATTCAAAATTACCGG+AGG | 0.662296 | 4.1:+34186197 | MS.gene056371:CDS |
CTGATACAAGAGCCTCACAC+TGG | 0.662972 | 4.1:-34187486 | None:intergenic |
CAGACACTGGAGTATTCGGA+AGG | 0.663133 | 4.1:+34188143 | MS.gene056371:intron |
GTTTACAACCATCTCGCAGG+AGG | 0.666560 | 4.1:+34185753 | MS.gene056371:CDS |
AGGTTATCGACAGAGAGCAA+TGG | 0.667525 | 4.1:-34187206 | None:intergenic |
ACCTCATTAAGCACTTAAGG+AGG | 0.670614 | 4.1:+34183247 | MS.gene056371:CDS |
TCAATTGGCTCAAGAAATGG+GGG | 0.671017 | 4.1:+34182115 | MS.gene056371:CDS |
GAAACTAGCCACTTGCCGTG+CGG | 0.674563 | 4.1:-34187422 | None:intergenic |
GAGACTGGGCCTGAACCAAG+TGG | 0.675352 | 4.1:+34187164 | MS.gene056371:CDS |
GGCCGAAAGTGACTTAATAG+CGG | 0.676502 | 4.1:-34186121 | None:intergenic |
GGTGTCTCCATAAACAATGG+AGG | 0.682652 | 4.1:-34186978 | None:intergenic |
TCATGAGGGAGAATGCCAGT+TGG | 0.689364 | 4.1:-34185115 | None:intergenic |
CAGGCAACATCTATGGACGA+TGG | 0.695818 | 4.1:+34184277 | MS.gene056371:CDS |
CCAAATGAAGAACCAGTGTG+AGG | 0.696233 | 4.1:+34187474 | MS.gene056371:CDS |
CATTGTTTATGGAGACACCA+AGG | 0.708806 | 4.1:+34186982 | MS.gene056371:CDS |
AAAACCTCACCTGATTACGA+GGG | 0.709357 | 4.1:-34180047 | None:intergenic |
ATTGTAAATACATCAAAACA+CGG | 0.725638 | 4.1:-34182958 | None:intergenic |
CAAGGGAAGCTACAACTCTG+CGG | 0.734909 | 4.1:+34182864 | MS.gene056371:CDS |
TAAAGAAACAACTTGCACAG+GGG | 0.750879 | 4.1:+34186925 | MS.gene056371:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 34179925 | 34188307 | 34179925 | ID=MS.gene056371 |
chr4.1 | mRNA | 34179925 | 34188307 | 34179925 | ID=MS.gene056371.t1;Parent=MS.gene056371 |
chr4.1 | exon | 34179925 | 34180059 | 34179925 | ID=MS.gene056371.t1.exon1;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34179925 | 34180059 | 34179925 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34180718 | 34180792 | 34180718 | ID=MS.gene056371.t1.exon2;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34180718 | 34180792 | 34180718 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34181007 | 34181122 | 34181007 | ID=MS.gene056371.t1.exon3;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34181007 | 34181122 | 34181007 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34181600 | 34181714 | 34181600 | ID=MS.gene056371.t1.exon4;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34181600 | 34181714 | 34181600 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34182065 | 34182193 | 34182065 | ID=MS.gene056371.t1.exon5;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34182065 | 34182193 | 34182065 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34182312 | 34182359 | 34182312 | ID=MS.gene056371.t1.exon6;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34182312 | 34182359 | 34182312 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34182553 | 34182707 | 34182553 | ID=MS.gene056371.t1.exon7;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34182553 | 34182707 | 34182553 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34182802 | 34182998 | 34182802 | ID=MS.gene056371.t1.exon8;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34182802 | 34182998 | 34182802 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34183085 | 34183377 | 34183085 | ID=MS.gene056371.t1.exon9;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34183085 | 34183377 | 34183085 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34183449 | 34183598 | 34183449 | ID=MS.gene056371.t1.exon10;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34183449 | 34183598 | 34183449 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34183691 | 34184011 | 34183691 | ID=MS.gene056371.t1.exon11;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34183691 | 34184011 | 34183691 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34184214 | 34184363 | 34184214 | ID=MS.gene056371.t1.exon12;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34184214 | 34184363 | 34184214 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34185083 | 34185158 | 34185083 | ID=MS.gene056371.t1.exon13;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34185083 | 34185158 | 34185083 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34185750 | 34185877 | 34185750 | ID=MS.gene056371.t1.exon14;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34185750 | 34185877 | 34185750 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34186024 | 34186218 | 34186024 | ID=MS.gene056371.t1.exon15;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34186024 | 34186218 | 34186024 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34186909 | 34187049 | 34186909 | ID=MS.gene056371.t1.exon16;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34186909 | 34187049 | 34186909 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34187134 | 34187262 | 34187134 | ID=MS.gene056371.t1.exon17;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34187134 | 34187262 | 34187134 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34187412 | 34187618 | 34187412 | ID=MS.gene056371.t1.exon18;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34187412 | 34187618 | 34187412 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
chr4.1 | exon | 34188146 | 34188307 | 34188146 | ID=MS.gene056371.t1.exon19;Parent=MS.gene056371.t1 |
chr4.1 | CDS | 34188146 | 34188307 | 34188146 | ID=cds.MS.gene056371.t1;Parent=MS.gene056371.t1 |
Gene Sequence |
Protein sequence |