Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056500.t1 | AET03441.2 | 99.7 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 1.50E-179 | 638.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056500.t1 | Q8LGI3 | 69.0 | 323 | 93 | 3 | 1 | 322 | 1 | 317 | 2.5e-122 | 439.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056500.t1 | G7L724 | 99.7 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 1.1e-179 | 638.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40797 | MS.gene056500 | PPI |
| MS.gene005307 | MS.gene056500 | PPI |
| MS.gene44181 | MS.gene056500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056500.t1 | MTR_8g070640 | 99.691 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 0.0 | 665 |
| MS.gene056500.t1 | MTR_1g045065 | 40.714 | 280 | 164 | 2 | 12 | 291 | 11 | 288 | 2.57e-74 | 231 |
| MS.gene056500.t1 | MTR_1g045065 | 38.017 | 242 | 147 | 3 | 1 | 242 | 1 | 239 | 2.33e-51 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056500.t1 | AT1G30825 | 69.040 | 323 | 93 | 3 | 1 | 322 | 1 | 317 | 9.73e-165 | 461 |
| MS.gene056500.t1 | AT2G33385 | 36.304 | 303 | 190 | 3 | 1 | 302 | 1 | 301 | 3.06e-71 | 223 |
| MS.gene056500.t1 | AT2G33385 | 36.304 | 303 | 190 | 3 | 1 | 302 | 1 | 301 | 1.34e-70 | 224 |
| MS.gene056500.t1 | AT2G33385 | 36.986 | 292 | 181 | 3 | 1 | 291 | 1 | 290 | 3.29e-70 | 221 |
| MS.gene056500.t1 | AT2G33385 | 35.644 | 303 | 183 | 4 | 1 | 302 | 1 | 292 | 1.16e-66 | 213 |
Find 77 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACTGTCCGATCCAGTTT+TGG | 0.217961 | 8.3:-32130782 | None:intergenic |
| TTCTGTTTCAGTATTGAAAA+AGG | 0.272592 | 8.3:+32126224 | MS.gene056500:intron |
| TAGAAATGTTGCTCCGGATA+TGG | 0.274270 | 8.3:+32128659 | MS.gene056500:CDS |
| TCTTGCAACTTCATTCTTGC+AGG | 0.278140 | 8.3:+32130346 | MS.gene056500:CDS |
| TTTGTATGTGGACTTCCTTT+TGG | 0.298544 | 8.3:+32127086 | MS.gene056500:CDS |
| ACAGATAGCAAGAAAATATT+AGG | 0.300457 | 8.3:-32127032 | None:intergenic |
| TGCTTTAAAATTACCCTTAG+TGG | 0.325047 | 8.3:-32128627 | None:intergenic |
| TCGTGTGGAGTCTTTGATTC+AGG | 0.327828 | 8.3:+32131677 | MS.gene056500:CDS |
| ATAATACCCCTCCTTGTTCA+TGG | 0.331553 | 8.3:+32130570 | MS.gene056500:CDS |
| AATGCAGGATTTGTATCATT+TGG | 0.336445 | 8.3:+32130647 | MS.gene056500:CDS |
| TGCAGCTTTGATTGCTTCAA+TGG | 0.339557 | 8.3:-32127111 | None:intergenic |
| TTCTTTGAACTCTCAGGATC+TGG | 0.345649 | 8.3:-32133688 | None:intergenic |
| TCATGTTGAAGGCCCAAAAC+TGG | 0.365625 | 8.3:+32130769 | MS.gene056500:CDS |
| AGAGCAAAGACAAGCACTTT+TGG | 0.378607 | 8.3:+32128566 | MS.gene056500:intron |
| CTATGTTAGTTATCATGTTA+AGG | 0.387046 | 8.3:+32130826 | MS.gene056500:CDS |
| CCGAAGGATTTATGCATACT+AGG | 0.392538 | 8.3:+32131646 | MS.gene056500:CDS |
| ATCTTCCCTCGTCATGTTGA+AGG | 0.393552 | 8.3:+32130758 | MS.gene056500:CDS |
| GTAGACACTCCTTTCAGTTC+CGG | 0.404731 | 8.3:-32130608 | None:intergenic |
| CAAAACTGGATCGGACAGTA+TGG | 0.412013 | 8.3:+32130783 | MS.gene056500:CDS |
| CGATGTCAGATATCACATTC+AGG | 0.427268 | 8.3:+32126280 | MS.gene056500:CDS |
| TGGTAAAAGTAGCATCAGTA+AGG | 0.458645 | 8.3:+32128586 | MS.gene056500:CDS |
| ATCGTTGCCTACTCCATCTT+CGG | 0.458816 | 8.3:+32127055 | MS.gene056500:CDS |
| GAAGCAATCAAAGCTGCATA+TGG | 0.481422 | 8.3:+32127116 | MS.gene056500:CDS |
| ATTAAGTCCAGCTGTACGCC+TGG | 0.485840 | 8.3:-32130549 | None:intergenic |
| TCGTCCTTGGTGCACCACTA+AGG | 0.490974 | 8.3:+32128613 | MS.gene056500:CDS |
| CCTAGTATGCATAAATCCTT+CGG | 0.491877 | 8.3:-32131646 | None:intergenic |
| GCGTTGAACTCGATCACCAC+TGG | 0.492167 | 8.3:+32126246 | MS.gene056500:CDS |
| GTTGAAGCCAGGCGTACAGC+TGG | 0.494941 | 8.3:+32130542 | MS.gene056500:CDS |
| TGCAAATTCTTGATCCTCCA+AGG | 0.496434 | 8.3:+32127147 | MS.gene056500:CDS |
| TGCTTCTAGAAATGTTGCTC+CGG | 0.496839 | 8.3:+32128653 | MS.gene056500:CDS |
| TTTAGGAATTTGTTGAAGCC+AGG | 0.498665 | 8.3:+32130531 | MS.gene056500:intron |
| ACTCCTTTCAGTTCCGGTGG+TGG | 0.499807 | 8.3:-32130602 | None:intergenic |
| CGTCCTTGGTGCACCACTAA+GGG | 0.507682 | 8.3:+32128614 | MS.gene056500:CDS |
| TCAAAGGTTCCTGCAAATCA+AGG | 0.510475 | 8.3:+32127203 | MS.gene056500:CDS |
| GCAACAAGTGGATCCATATC+CGG | 0.514116 | 8.3:-32128672 | None:intergenic |
| TCAGTAAGGGAGGTCGTCCT+TGG | 0.514232 | 8.3:+32128600 | MS.gene056500:CDS |
| CTGAAGCAAGAATCTAGAAT+GGG | 0.518291 | 8.3:-32126089 | None:intergenic |
| GCAAGAATCTAGAATGGGAC+TGG | 0.526581 | 8.3:-32126084 | None:intergenic |
| TCTGAAGCAAGAATCTAGAA+TGG | 0.526800 | 8.3:-32126090 | None:intergenic |
| ATTGCTTCAATGGCTCCAAA+AGG | 0.535755 | 8.3:-32127101 | None:intergenic |
| ATCGAATCATTGAATCTCAT+AGG | 0.537796 | 8.3:-32130314 | None:intergenic |
| TACTAGGATGCGTCGTCGTG+TGG | 0.540037 | 8.3:+32131662 | MS.gene056500:CDS |
| GTGAGGTTAAAGCCATCCCT+TGG | 0.545057 | 8.3:-32127164 | None:intergenic |
| CTTAACATGATAACTAACAT+AGG | 0.549462 | 8.3:-32130825 | None:intergenic |
| TGCTCTTGTTCATCGACCAA+AGG | 0.549781 | 8.3:+32128692 | MS.gene056500:CDS |
| TATTTGTAACAGTGCTCCGA+AGG | 0.554094 | 8.3:+32131630 | MS.gene056500:intron |
| GATGCATTATCTGCAAATGC+AGG | 0.555094 | 8.3:+32130632 | MS.gene056500:CDS |
| AGTTGGTTCTTGACTCCTTG+AGG | 0.563499 | 8.3:-32133856 | None:intergenic |
| ATTCTTGATCCTCCAAGGGA+TGG | 0.567110 | 8.3:+32127152 | MS.gene056500:CDS |
| CAGCAGATCCTTCCAACGAC+TGG | 0.570937 | 8.3:+32133720 | MS.gene056500:CDS |
| AGAGATTTATCTTCAATGTG+AGG | 0.573141 | 8.3:-32127181 | None:intergenic |
| TCACCTTTATGAAAACGAGT+TGG | 0.576116 | 8.3:-32133873 | None:intergenic |
| ATGACGAACCAGTCGTTGGA+AGG | 0.585095 | 8.3:-32133728 | None:intergenic |
| AGGTTAAAGCCATCCCTTGG+AGG | 0.592449 | 8.3:-32127161 | None:intergenic |
| ATGGTCTCATACTCCACCAC+CGG | 0.595235 | 8.3:+32130589 | MS.gene056500:CDS |
| CGTTGAACTCGATCACCACT+GGG | 0.595892 | 8.3:+32126247 | MS.gene056500:CDS |
| GCACATGACGAACCAGTCGT+TGG | 0.599616 | 8.3:-32133732 | None:intergenic |
| ATTGAAGATAAATCTCTCAA+AGG | 0.600659 | 8.3:+32127187 | MS.gene056500:CDS |
| GACACTCCTTTCAGTTCCGG+TGG | 0.603064 | 8.3:-32130605 | None:intergenic |
| TTGAAGGCCCAAAACTGGAT+CGG | 0.604670 | 8.3:+32130774 | MS.gene056500:CDS |
| GGTAAAAGTAGCATCAGTAA+GGG | 0.605688 | 8.3:+32128587 | MS.gene056500:CDS |
| GAGCAACATTTCTAGAAGCA+AGG | 0.606157 | 8.3:-32128650 | None:intergenic |
| TATGAGACCATGAACAAGGA+GGG | 0.608289 | 8.3:-32130577 | None:intergenic |
| GCAAATTCTTGATCCTCCAA+GGG | 0.614206 | 8.3:+32127148 | MS.gene056500:CDS |
| ACTCCACCACCGGAACTGAA+AGG | 0.622847 | 8.3:+32130599 | MS.gene056500:CDS |
| ATAGTTTCCGAAGATGGAGT+AGG | 0.625652 | 8.3:-32127062 | None:intergenic |
| TTTGGGCCTTCAACATGACG+AGG | 0.628818 | 8.3:-32130764 | None:intergenic |
| TACTGGATTATAGAGCCTCA+AGG | 0.632105 | 8.3:+32133841 | MS.gene056500:intron |
| CGATGAACAAGAGCAACAAG+TGG | 0.645702 | 8.3:-32128684 | None:intergenic |
| GGAGTATGAGACCATGAACA+AGG | 0.647126 | 8.3:-32130581 | None:intergenic |
| AGAATCTAGAATGGGACTGG+AGG | 0.653361 | 8.3:-32126081 | None:intergenic |
| AAAAGTAGCATCAGTAAGGG+AGG | 0.660193 | 8.3:+32128590 | MS.gene056500:CDS |
| TTGGGCCTTCAACATGACGA+GGG | 0.678323 | 8.3:-32130763 | None:intergenic |
| ATGAGACCATGAACAAGGAG+GGG | 0.678416 | 8.3:-32130576 | None:intergenic |
| CATCGTCAAATTCAACCCAG+TGG | 0.726847 | 8.3:-32126262 | None:intergenic |
| GTATGAGACCATGAACAAGG+AGG | 0.729871 | 8.3:-32130578 | None:intergenic |
| TTACCCTTAGTGGTGCACCA+AGG | 0.750127 | 8.3:-32128617 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 32126073 | 32133889 | 32126073 | ID=MS.gene056500 |
| chr8.3 | mRNA | 32126073 | 32133889 | 32126073 | ID=MS.gene056500.t1;Parent=MS.gene056500 |
| chr8.3 | exon | 32126073 | 32126134 | 32126073 | ID=MS.gene056500.t1.exon1;Parent=MS.gene056500.t1 |
| chr8.3 | CDS | 32126073 | 32126134 | 32126073 | ID=cds.MS.gene056500.t1;Parent=MS.gene056500.t1 |
| chr8.3 | exon | 32126235 | 32126301 | 32126235 | ID=MS.gene056500.t1.exon2;Parent=MS.gene056500.t1 |
| chr8.3 | CDS | 32126235 | 32126301 | 32126235 | ID=cds.MS.gene056500.t1;Parent=MS.gene056500.t1 |
| chr8.3 | exon | 32127017 | 32127224 | 32127017 | ID=MS.gene056500.t1.exon3;Parent=MS.gene056500.t1 |
| chr8.3 | CDS | 32127017 | 32127224 | 32127017 | ID=cds.MS.gene056500.t1;Parent=MS.gene056500.t1 |
| chr8.3 | exon | 32128568 | 32128737 | 32128568 | ID=MS.gene056500.t1.exon4;Parent=MS.gene056500.t1 |
| chr8.3 | CDS | 32128568 | 32128737 | 32128568 | ID=cds.MS.gene056500.t1;Parent=MS.gene056500.t1 |
| chr8.3 | exon | 32130290 | 32130367 | 32130290 | ID=MS.gene056500.t1.exon5;Parent=MS.gene056500.t1 |
| chr8.3 | CDS | 32130290 | 32130367 | 32130290 | ID=cds.MS.gene056500.t1;Parent=MS.gene056500.t1 |
| chr8.3 | exon | 32130536 | 32130668 | 32130536 | ID=MS.gene056500.t1.exon6;Parent=MS.gene056500.t1 |
| chr8.3 | CDS | 32130536 | 32130668 | 32130536 | ID=cds.MS.gene056500.t1;Parent=MS.gene056500.t1 |
| chr8.3 | exon | 32130756 | 32130847 | 32130756 | ID=MS.gene056500.t1.exon7;Parent=MS.gene056500.t1 |
| chr8.3 | CDS | 32130756 | 32130847 | 32130756 | ID=cds.MS.gene056500.t1;Parent=MS.gene056500.t1 |
| chr8.3 | exon | 32131642 | 32131698 | 32131642 | ID=MS.gene056500.t1.exon8;Parent=MS.gene056500.t1 |
| chr8.3 | CDS | 32131642 | 32131698 | 32131642 | ID=cds.MS.gene056500.t1;Parent=MS.gene056500.t1 |
| chr8.3 | exon | 32133670 | 32133741 | 32133670 | ID=MS.gene056500.t1.exon9;Parent=MS.gene056500.t1 |
| chr8.3 | CDS | 32133670 | 32133741 | 32133670 | ID=cds.MS.gene056500.t1;Parent=MS.gene056500.t1 |
| chr8.3 | exon | 32133854 | 32133889 | 32133854 | ID=MS.gene056500.t1.exon10;Parent=MS.gene056500.t1 |
| chr8.3 | CDS | 32133854 | 32133889 | 32133854 | ID=cds.MS.gene056500.t1;Parent=MS.gene056500.t1 |
| Gene Sequence |
| Protein sequence |