Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056706.t1 | XP_003606904.1 | 98.1 | 311 | 5 | 1 | 1 | 310 | 1 | 311 | 2.80E-159 | 571.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056706.t1 | Q8GUH2 | 43.2 | 294 | 136 | 10 | 36 | 308 | 42 | 325 | 6.9e-37 | 156.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056706.t1 | G7JG61 | 98.1 | 311 | 5 | 1 | 1 | 310 | 1 | 311 | 2.1e-159 | 571.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92099 | MS.gene056706 | PPI |
| MS.gene056706 | MS.gene019686 | PPI |
| MS.gene79923 | MS.gene056706 | PPI |
| MS.gene056706 | MS.gene000647 | PPI |
| MS.gene056706 | MS.gene056832 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056706.t1 | MTR_4g070020 | 98.071 | 311 | 5 | 1 | 1 | 310 | 1 | 311 | 0.0 | 627 |
| MS.gene056706.t1 | MTR_4g070020 | 97.458 | 236 | 5 | 1 | 1 | 235 | 1 | 236 | 4.44e-169 | 469 |
| MS.gene056706.t1 | MTR_1g022190 | 49.320 | 294 | 127 | 7 | 26 | 309 | 30 | 311 | 9.59e-91 | 273 |
| MS.gene056706.t1 | MTR_1g022190 | 49.320 | 294 | 127 | 7 | 26 | 309 | 55 | 336 | 2.17e-90 | 273 |
| MS.gene056706.t1 | MTR_1g022190 | 49.153 | 295 | 128 | 7 | 26 | 310 | 60 | 342 | 3.59e-90 | 272 |
| MS.gene056706.t1 | MTR_8g028630 | 41.667 | 312 | 154 | 9 | 14 | 309 | 3 | 302 | 4.90e-64 | 206 |
| MS.gene056706.t1 | MTR_1g022190 | 49.515 | 206 | 88 | 4 | 26 | 227 | 55 | 248 | 1.21e-62 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056706.t1 | AT1G19400 | 54.485 | 301 | 127 | 5 | 13 | 310 | 10 | 303 | 3.28e-107 | 314 |
| MS.gene056706.t1 | AT1G19400 | 54.485 | 301 | 127 | 5 | 13 | 310 | 10 | 303 | 3.28e-107 | 314 |
| MS.gene056706.t1 | AT1G19400 | 54.485 | 301 | 127 | 5 | 13 | 310 | 10 | 303 | 3.28e-107 | 314 |
| MS.gene056706.t1 | AT1G75180 | 56.569 | 274 | 115 | 3 | 41 | 310 | 42 | 315 | 2.71e-106 | 313 |
| MS.gene056706.t1 | AT1G75180 | 56.569 | 274 | 115 | 3 | 41 | 310 | 42 | 315 | 2.71e-106 | 313 |
| MS.gene056706.t1 | AT1G19400 | 54.185 | 227 | 98 | 3 | 13 | 236 | 10 | 233 | 1.67e-78 | 239 |
| MS.gene056706.t1 | AT1G75180 | 55.959 | 193 | 83 | 1 | 41 | 231 | 42 | 234 | 5.36e-72 | 223 |
| MS.gene056706.t1 | AT1G75180 | 55.959 | 193 | 83 | 1 | 41 | 231 | 42 | 234 | 5.07e-71 | 221 |
| MS.gene056706.t1 | AT1G01500 | 41.892 | 296 | 141 | 10 | 36 | 310 | 42 | 327 | 3.78e-63 | 202 |
Find 85 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGGCACAAAGTTCTTTA+AGG | 0.155540 | 4.3:+35541733 | MS.gene056706:CDS |
| GATACCCTTCTTGAAGTTAA+TGG | 0.212761 | 4.3:+35541458 | MS.gene056706:CDS |
| GAGAATGATGCAAATGAAAA+TGG | 0.217056 | 4.3:+35541908 | MS.gene056706:CDS |
| TCCTTCTGCGCTTGCTTTGC+AGG | 0.233001 | 4.3:+35541937 | MS.gene056706:CDS |
| CATGGTTTAACGCCGGTGTT+AGG | 0.255714 | 4.3:+35542759 | MS.gene056706:CDS |
| GAGAATTCGTATAAGGTTAA+TGG | 0.283457 | 4.3:+35541257 | MS.gene056706:CDS |
| GGAAATGGACCAAGTGAAAA+TGG | 0.283915 | 4.3:+35541278 | MS.gene056706:CDS |
| GTTAGGGTTGGTGTTGGTAT+TGG | 0.297925 | 4.3:+35542776 | MS.gene056706:CDS |
| ATTGCTGTTACATAATTCTA+AGG | 0.316159 | 4.3:-35541645 | None:intergenic |
| CTCATATCAACCCTCGATAA+AGG | 0.321091 | 4.3:+35541325 | MS.gene056706:CDS |
| AGAAGGGTATCAGGATTTAA+AGG | 0.331368 | 4.3:-35541446 | None:intergenic |
| GGAGAAGCAATTGTTGTTGC+CGG | 0.344534 | 4.3:+35541754 | MS.gene056706:CDS |
| AAAGATAAGCTTCTTCTGTT+TGG | 0.350138 | 4.3:+35541620 | MS.gene056706:CDS |
| TTAACTTCAAGAAGGGTATC+AGG | 0.353127 | 4.3:-35541455 | None:intergenic |
| TCGTATAAGGTTAATGGAAA+TGG | 0.363071 | 4.3:+35541263 | MS.gene056706:CDS |
| GCGAAGATGGGGAACTTTCA+TGG | 0.371984 | 4.3:+35542741 | MS.gene056706:CDS |
| AGAATAGCCGTCTTCTGAAT+TGG | 0.372025 | 4.3:-35542868 | None:intergenic |
| GTTAGAGAATCAAATTCTAA+TGG | 0.378979 | 4.3:+35541674 | MS.gene056706:CDS |
| TATATTGCCGGGTCCTTCTC+TGG | 0.379377 | 4.3:+35541803 | MS.gene056706:CDS |
| CGTTACCGTGGTTAGACATA+AGG | 0.381604 | 4.3:+35541351 | MS.gene056706:CDS |
| ACAATTGAGGTCTATATTGC+CGG | 0.393367 | 4.3:+35541791 | MS.gene056706:CDS |
| TTGTAAGCACTGATAGTATA+AGG | 0.394406 | 4.3:+35541564 | MS.gene056706:CDS |
| TGTTTGTCATACATGTAATC+TGG | 0.402010 | 4.3:-35542668 | None:intergenic |
| CGCGATGGAGAATTCGTATA+AGG | 0.406902 | 4.3:+35541250 | None:intergenic |
| TTCTTGAAGTTAATGGTGTT+CGG | 0.422504 | 4.3:+35541465 | MS.gene056706:CDS |
| CTTAGTGTTTGTCTTGGAAT+CGG | 0.423405 | 4.3:+35542800 | MS.gene056706:CDS |
| TGATTAAGTGTGAGAATCTC+AGG | 0.428692 | 4.3:-35541419 | None:intergenic |
| CGGAGTAGTTTATATTCTGA+TGG | 0.435949 | 4.3:+35541485 | MS.gene056706:CDS |
| GCAATATAGACCTCAATTGT+TGG | 0.437528 | 4.3:-35541788 | None:intergenic |
| CTTGGAATCGGCATTGGAGT+TGG | 0.441010 | 4.3:+35542812 | MS.gene056706:CDS |
| GGATTCCAACCCTTCTCAAA+AGG | 0.443968 | 4.3:+35541507 | MS.gene056706:CDS |
| TCCTTAAAGAACTTTGTGCC+TGG | 0.447833 | 4.3:-35541734 | None:intergenic |
| GGATAGGGTGGATAGAAAAT+CGG | 0.450168 | 4.3:+35541529 | MS.gene056706:CDS |
| GTTTGTCTTGGAATCGGCAT+TGG | 0.451016 | 4.3:+35542806 | MS.gene056706:CDS |
| TGTGAGTCGAATATAATTCC+AGG | 0.452189 | 4.3:+35541716 | MS.gene056706:CDS |
| ATGGTTTAACGCCGGTGTTA+GGG | 0.458989 | 4.3:+35542760 | MS.gene056706:CDS |
| TCATATCAACCCTCGATAAA+GGG | 0.470195 | 4.3:+35541326 | MS.gene056706:CDS |
| AGAATGATGCAAATGAAAAT+GGG | 0.470852 | 4.3:+35541909 | MS.gene056706:CDS |
| CGTATGCTGTTCTTGTGTAT+AGG | 0.473133 | 4.3:-35542712 | None:intergenic |
| TGAATTGGCCGGTGGCACCT+TGG | 0.475731 | 4.3:-35542853 | None:intergenic |
| CAACCCTTCTCAAAAGGGAT+AGG | 0.480345 | 4.3:+35541513 | MS.gene056706:CDS |
| GGGTGGTAGTGTGAAGTTTG+AGG | 0.481054 | 4.3:+35541589 | MS.gene056706:CDS |
| ATTGGACTTAGTGTTTGTCT+TGG | 0.481547 | 4.3:+35542794 | MS.gene056706:CDS |
| GCATACGCTGACGGCGAAGA+TGG | 0.492307 | 4.3:+35542728 | MS.gene056706:CDS |
| CAAATTCTAATGGACAAAGT+TGG | 0.492533 | 4.3:+35541684 | MS.gene056706:CDS |
| GTTACCGTGGTTAGACATAA+GGG | 0.505953 | 4.3:+35541352 | MS.gene056706:CDS |
| CATACGCTGACGGCGAAGAT+GGG | 0.511131 | 4.3:+35542729 | MS.gene056706:CDS |
| GATTCCAACCCTTCTCAAAA+GGG | 0.526688 | 4.3:+35541508 | MS.gene056706:CDS |
| GGAGTAGTTTATATTCTGAT+GGG | 0.528712 | 4.3:+35541486 | MS.gene056706:CDS |
| ACCTGCAAAGCAAGCGCAGA+AGG | 0.534939 | 4.3:-35541938 | None:intergenic |
| AACCCTTCTCAAAAGGGATA+GGG | 0.548703 | 4.3:+35541514 | MS.gene056706:CDS |
| GCCGGTGTTAGGGTTGGTGT+TGG | 0.549235 | 4.3:+35542770 | MS.gene056706:CDS |
| AAGCACTGATAGTATAAGGA+TGG | 0.550177 | 4.3:+35541568 | MS.gene056706:CDS |
| CTCTACTCTTCCAACAATTG+AGG | 0.556408 | 4.3:+35541778 | MS.gene056706:CDS |
| AAATCATACCAAGGTGCCAC+CGG | 0.568352 | 4.3:+35542845 | MS.gene056706:CDS |
| GAACACCATTAACTTCAAGA+AGG | 0.569037 | 4.3:-35541463 | None:intergenic |
| TTTAACGCCGGTGTTAGGGT+TGG | 0.570434 | 4.3:+35542764 | MS.gene056706:CDS |
| TAGCCGTCTTCTGAATTGGC+CGG | 0.581948 | 4.3:-35542864 | None:intergenic |
| CAATTGAGGTCTATATTGCC+GGG | 0.582339 | 4.3:+35541792 | MS.gene056706:CDS |
| CCACCGGCCAATTCAGAAGA+CGG | 0.588469 | 4.3:+35542861 | MS.gene056706:CDS |
| TCTGGAATTGCATTCAACGC+CGG | 0.588676 | 4.3:-35541887 | None:intergenic |
| AAAATGGATACTCTATTGCT+AGG | 0.589815 | 4.3:+35541294 | MS.gene056706:CDS |
| CGATAAAGGGTTCGTTACCG+TGG | 0.592561 | 4.3:+35541339 | MS.gene056706:CDS |
| AAGGTCTTCGTTAAGATGAT+CGG | 0.592566 | 4.3:-35541830 | None:intergenic |
| CGGAGTGCCAGAGAAGGACC+CGG | 0.592882 | 4.3:-35541810 | None:intergenic |
| GATGCAAATGAAAATGGGAA+AGG | 0.596141 | 4.3:+35541914 | MS.gene056706:CDS |
| AACACCATTAACTTCAAGAA+GGG | 0.596194 | 4.3:-35541462 | None:intergenic |
| CCTTCTCAAAAGGGATAGGG+TGG | 0.600087 | 4.3:+35541517 | MS.gene056706:CDS |
| ATTGTTGGAAGAGTAGAGTC+CGG | 0.603903 | 4.3:-35541773 | None:intergenic |
| ACAAGAACAGCATACGCTGA+CGG | 0.606360 | 4.3:+35542719 | MS.gene056706:CDS |
| AGCACTGATAGTATAAGGAT+GGG | 0.617470 | 4.3:+35541569 | MS.gene056706:CDS |
| ACCAACACCAACCCTAACAC+CGG | 0.618909 | 4.3:-35542771 | None:intergenic |
| CGGTAACGAACCCTTTATCG+AGG | 0.628590 | 4.3:-35541336 | None:intergenic |
| ATACGCTGACGGCGAAGATG+GGG | 0.629010 | 4.3:+35542730 | MS.gene056706:CDS |
| CATGATGATGAGGATTATCA+CGG | 0.635768 | 4.3:+35542689 | MS.gene056706:CDS |
| GATGATCGGAGTGCCAGAGA+AGG | 0.637274 | 4.3:-35541816 | None:intergenic |
| CCGTCTTCTGAATTGGCCGG+TGG | 0.642624 | 4.3:-35542861 | None:intergenic |
| GGTAACGAACCCTTTATCGA+GGG | 0.642976 | 4.3:-35541335 | None:intergenic |
| ACTGATAGTATAAGGATGGG+TGG | 0.646255 | 4.3:+35541572 | MS.gene056706:CDS |
| AACACCCTTATGTCTAACCA+CGG | 0.647619 | 4.3:-35541356 | None:intergenic |
| TTAGAATTATGTAACAGCAA+TGG | 0.648523 | 4.3:+35541647 | MS.gene056706:CDS |
| GAACTTTCATGGTTTAACGC+CGG | 0.650464 | 4.3:+35542752 | MS.gene056706:CDS |
| AAGTGTGAGAATCTCAGGAG+TGG | 0.662685 | 4.3:-35541414 | None:intergenic |
| GTATGACAAACATGATGATG+AGG | 0.669080 | 4.3:+35542679 | MS.gene056706:CDS |
| ATACTCGTTAAATCATACCA+AGG | 0.711189 | 4.3:+35542836 | MS.gene056706:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCATTTACATAAAATAATA+AGG | - | chr4.3:35542641-35542660 | None:intergenic | 15.0% |
| !!! | AAATTTTTAAAATCTTGTCA+AGG | - | chr4.3:35542551-35542570 | None:intergenic | 15.0% |
| !! | ATATTTATGAACAAACCAAA+TGG | + | chr4.3:35542571-35542590 | MS.gene056706:intron | 20.0% |
| !! | ATTTAAATAAGCACATGAAA+AGG | - | chr4.3:35541986-35542005 | None:intergenic | 20.0% |
| !! | GATATAACTGTAAATTATCT+TGG | + | chr4.3:35542381-35542400 | MS.gene056706:intron | 20.0% |
| !!! | AGGAATTATCTATAATTTGT+TGG | - | chr4.3:35542621-35542640 | None:intergenic | 20.0% |
| !!! | GGAATTATCTATAATTTGTT+GGG | - | chr4.3:35542620-35542639 | None:intergenic | 20.0% |
| ! | AGAATGATGCAAATGAAAAT+GGG | + | chr4.3:35541909-35541928 | MS.gene056706:CDS | 25.0% |
| ! | GTTAGAGAATCAAATTCTAA+TGG | + | chr4.3:35541674-35541693 | MS.gene056706:CDS | 25.0% |
| ! | TTAGAATTATGTAACAGCAA+TGG | + | chr4.3:35541647-35541666 | MS.gene056706:CDS | 25.0% |
| ! | TTCTTCATAAGATTTCCATT+TGG | - | chr4.3:35542589-35542608 | None:intergenic | 25.0% |
| !! | ATTGCTGTTACATAATTCTA+AGG | - | chr4.3:35541648-35541667 | None:intergenic | 25.0% |
| !! | TACAAAGTGTTCTTAAATAG+TGG | + | chr4.3:35542156-35542175 | MS.gene056706:intron | 25.0% |
| !!! | TCTATAATTTGTTGGGAAAA+TGG | - | chr4.3:35542613-35542632 | None:intergenic | 25.0% |
| !!! | TTATTTTATGTAAATGCTGC+AGG | + | chr4.3:35542643-35542662 | MS.gene056706:intron | 25.0% |
| AAAATGGATACTCTATTGCT+AGG | + | chr4.3:35541294-35541313 | MS.gene056706:CDS | 30.0% | |
| AAAGATAAGCTTCTTCTGTT+TGG | + | chr4.3:35541620-35541639 | MS.gene056706:CDS | 30.0% | |
| AACACCATTAACTTCAAGAA+GGG | - | chr4.3:35541465-35541484 | None:intergenic | 30.0% | |
| ATACTCGTTAAATCATACCA+AGG | + | chr4.3:35542836-35542855 | MS.gene056706:CDS | 30.0% | |
| ATTCAAGCAACAAGTTAACA+AGG | - | chr4.3:35542038-35542057 | None:intergenic | 30.0% | |
| GAGAATGATGCAAATGAAAA+TGG | + | chr4.3:35541908-35541927 | MS.gene056706:CDS | 30.0% | |
| GAGAATTCGTATAAGGTTAA+TGG | + | chr4.3:35541257-35541276 | MS.gene056706:CDS | 30.0% | |
| GGAGTAGTTTATATTCTGAT+GGG | + | chr4.3:35541486-35541505 | MS.gene056706:CDS | 30.0% | |
| GTTCTCAAAAAAGACATACA+AGG | + | chr4.3:35541861-35541880 | MS.gene056706:CDS | 30.0% | |
| TCGTATAAGGTTAATGGAAA+TGG | + | chr4.3:35541263-35541282 | MS.gene056706:CDS | 30.0% | |
| TGTTTGTCATACATGTAATC+TGG | - | chr4.3:35542671-35542690 | None:intergenic | 30.0% | |
| TTCTTGAAGTTAATGGTGTT+CGG | + | chr4.3:35541465-35541484 | MS.gene056706:CDS | 30.0% | |
| ! | CAAATTCTAATGGACAAAGT+TGG | + | chr4.3:35541684-35541703 | MS.gene056706:CDS | 30.0% |
| ! | GATTTGTTCAAATCCCTAAA+GGG | - | chr4.3:35542109-35542128 | None:intergenic | 30.0% |
| ! | TTTTCATTTGCATCATTCTC+TGG | - | chr4.3:35541908-35541927 | None:intergenic | 30.0% |
| !! | ATAGAGTATCCATTTTCACT+TGG | - | chr4.3:35541290-35541309 | None:intergenic | 30.0% |
| !! | ATTGGCTCAACGTAATTTTA+TGG | + | chr4.3:35542266-35542285 | MS.gene056706:intron | 30.0% |
| !! | TTGTAAGCACTGATAGTATA+AGG | + | chr4.3:35541564-35541583 | MS.gene056706:CDS | 30.0% |
| !! | TTTTTGAGAACTAAGATGCA+AGG | - | chr4.3:35541852-35541871 | None:intergenic | 30.0% |
| !!! | ACATAAGGGTGTTTTATGTA+AGG | + | chr4.3:35541366-35541385 | MS.gene056706:CDS | 30.0% |
| !!! | CATAAGGGTGTTTTATGTAA+GGG | + | chr4.3:35541367-35541386 | MS.gene056706:CDS | 30.0% |
| AAAAAGACATACAAGGAAGC+CGG | + | chr4.3:35541868-35541887 | MS.gene056706:CDS | 35.0% | |
| AAGGTCTTCGTTAAGATGAT+CGG | - | chr4.3:35541833-35541852 | None:intergenic | 35.0% | |
| ACAATTGAGGTCTATATTGC+CGG | + | chr4.3:35541791-35541810 | MS.gene056706:CDS | 35.0% | |
| ATTATGTTCCATCTCCTACT+AGG | - | chr4.3:35542353-35542372 | None:intergenic | 35.0% | |
| ATTGGACTTAGTGTTTGTCT+TGG | + | chr4.3:35542794-35542813 | MS.gene056706:CDS | 35.0% | |
| CGGAGTAGTTTATATTCTGA+TGG | + | chr4.3:35541485-35541504 | MS.gene056706:CDS | 35.0% | |
| CTTAGTGTTTGTCTTGGAAT+CGG | + | chr4.3:35542800-35542819 | MS.gene056706:CDS | 35.0% | |
| GAACACCATTAACTTCAAGA+AGG | - | chr4.3:35541466-35541485 | None:intergenic | 35.0% | |
| GATACCCTTCTTGAAGTTAA+TGG | + | chr4.3:35541458-35541477 | MS.gene056706:CDS | 35.0% | |
| GATGCAAATGAAAATGGGAA+AGG | + | chr4.3:35541914-35541933 | MS.gene056706:CDS | 35.0% | |
| GCAATATAGACCTCAATTGT+TGG | - | chr4.3:35541791-35541810 | None:intergenic | 35.0% | |
| TCATATCAACCCTCGATAAA+GGG | + | chr4.3:35541326-35541345 | MS.gene056706:CDS | 35.0% | |
| TGATATGCGATTGACAATAC+AGG | + | chr4.3:35542228-35542247 | MS.gene056706:intron | 35.0% | |
| TGATTAAGTGTGAGAATCTC+AGG | - | chr4.3:35541422-35541441 | None:intergenic | 35.0% | |
| TGTGAGTCGAATATAATTCC+AGG | + | chr4.3:35541716-35541735 | MS.gene056706:CDS | 35.0% | |
| ! | AACTATTTTCATCACTCGTC+AGG | - | chr4.3:35542527-35542546 | None:intergenic | 35.0% |
| ! | ATGCACTGACATAGTTAAAG+AGG | - | chr4.3:35542012-35542031 | None:intergenic | 35.0% |
| ! | CATGATGATGAGGATTATCA+CGG | + | chr4.3:35542689-35542708 | MS.gene056706:CDS | 35.0% |
| ! | CGATTTGTTCAAATCCCTAA+AGG | - | chr4.3:35542110-35542129 | None:intergenic | 35.0% |
| ! | GTATGACAAACATGATGATG+AGG | + | chr4.3:35542679-35542698 | MS.gene056706:CDS | 35.0% |
| !! | AAGCACTGATAGTATAAGGA+TGG | + | chr4.3:35541568-35541587 | MS.gene056706:CDS | 35.0% |
| !! | AGAAGGGTATCAGGATTTAA+AGG | - | chr4.3:35541449-35541468 | None:intergenic | 35.0% |
| !! | AGCACTGATAGTATAAGGAT+GGG | + | chr4.3:35541569-35541588 | MS.gene056706:CDS | 35.0% |
| !! | TTAACTTCAAGAAGGGTATC+AGG | - | chr4.3:35541458-35541477 | None:intergenic | 35.0% |
| !! | TTATCTTGGCTCTTTTTCTG+AGG | + | chr4.3:35542395-35542414 | MS.gene056706:intron | 35.0% |
| AACACCCTTATGTCTAACCA+CGG | - | chr4.3:35541359-35541378 | None:intergenic | 40.0% | |
| AACCCTTCTCAAAAGGGATA+GGG | + | chr4.3:35541514-35541533 | MS.gene056706:CDS | 40.0% | |
| AATAGTGTATCGCAGAACAG+TGG | - | chr4.3:35542133-35542152 | None:intergenic | 40.0% | |
| ACTGATAGTATAAGGATGGG+TGG | + | chr4.3:35541572-35541591 | MS.gene056706:CDS | 40.0% | |
| AGAATAGCCGTCTTCTGAAT+TGG | - | chr4.3:35542871-35542890 | None:intergenic | 40.0% | |
| ATTGTTGGAAGAGTAGAGTC+CGG | - | chr4.3:35541776-35541795 | None:intergenic | 40.0% | |
| CAATTGAGGTCTATATTGCC+GGG | + | chr4.3:35541792-35541811 | MS.gene056706:CDS | 40.0% | |
| CGTATGCTGTTCTTGTGTAT+AGG | - | chr4.3:35542715-35542734 | None:intergenic | 40.0% | |
| CTCATATCAACCCTCGATAA+AGG | + | chr4.3:35541325-35541344 | MS.gene056706:CDS | 40.0% | |
| CTCTACTCTTCCAACAATTG+AGG | + | chr4.3:35541778-35541797 | MS.gene056706:CDS | 40.0% | |
| GAACTTTCATGGTTTAACGC+CGG | + | chr4.3:35542752-35542771 | MS.gene056706:CDS | 40.0% | |
| GATTCCAACCCTTCTCAAAA+GGG | + | chr4.3:35541508-35541527 | MS.gene056706:CDS | 40.0% | |
| GCTATGGCATTGTACTTTAG+TGG | + | chr4.3:35542180-35542199 | MS.gene056706:intron | 40.0% | |
| GGAAATGGACCAAGTGAAAA+TGG | + | chr4.3:35541278-35541297 | MS.gene056706:CDS | 40.0% | |
| GGAGTCGTTTGAATATGACA+TGG | + | chr4.3:35542287-35542306 | MS.gene056706:intron | 40.0% | |
| GGATAGGGTGGATAGAAAAT+CGG | + | chr4.3:35541529-35541548 | MS.gene056706:CDS | 40.0% | |
| GTTACCGTGGTTAGACATAA+GGG | + | chr4.3:35541352-35541371 | MS.gene056706:CDS | 40.0% | |
| GTTCTTAAATAGTGGCGCTA+TGG | + | chr4.3:35542164-35542183 | MS.gene056706:intron | 40.0% | |
| TCCAGGCACAAAGTTCTTTA+AGG | + | chr4.3:35541733-35541752 | MS.gene056706:CDS | 40.0% | |
| TCCTTAAAGAACTTTGTGCC+TGG | - | chr4.3:35541737-35541756 | None:intergenic | 40.0% | |
| TTTGAGAAATAGCTGTCCTC+CGG | + | chr4.3:35542461-35542480 | MS.gene056706:intron | 40.0% | |
| ! | AGGTCTAGCGTTGCTTTAAT+TGG | + | chr4.3:35542248-35542267 | MS.gene056706:intron | 40.0% |
| AAGTGTGAGAATCTCAGGAG+TGG | - | chr4.3:35541417-35541436 | None:intergenic | 45.0% | |
| ACAAGAACAGCATACGCTGA+CGG | + | chr4.3:35542719-35542738 | MS.gene056706:CDS | 45.0% | |
| ACTATAGCGCTATGCCCTTT+AGG | + | chr4.3:35542092-35542111 | MS.gene056706:intron | 45.0% | |
| AGTGCCGCAATTTGACAACA+CGG | - | chr4.3:35542075-35542094 | None:intergenic | 45.0% | |
| CAACCCTTCTCAAAAGGGAT+AGG | + | chr4.3:35541513-35541532 | MS.gene056706:CDS | 45.0% | |
| CGTTACCGTGGTTAGACATA+AGG | + | chr4.3:35541351-35541370 | MS.gene056706:CDS | 45.0% | |
| CTATAGCGCTATGCCCTTTA+GGG | + | chr4.3:35542093-35542112 | MS.gene056706:intron | 45.0% | |
| GACTCCGTGTTGTCAAATTG+CGG | + | chr4.3:35542068-35542087 | MS.gene056706:intron | 45.0% | |
| GACTGATGTCACAACCTAGT+AGG | + | chr4.3:35542336-35542355 | MS.gene056706:intron | 45.0% | |
| GGATTCCAACCCTTCTCAAA+AGG | + | chr4.3:35541507-35541526 | MS.gene056706:CDS | 45.0% | |
| GGTAACGAACCCTTTATCGA+GGG | - | chr4.3:35541338-35541357 | None:intergenic | 45.0% | |
| GTTTGTCTTGGAATCGGCAT+TGG | + | chr4.3:35542806-35542825 | MS.gene056706:CDS | 45.0% | |
| TGTCACAACCTAGTAGGAGA+TGG | + | chr4.3:35542342-35542361 | MS.gene056706:intron | 45.0% | |
| ! | AAATCATACCAAGGTGCCAC+CGG | + | chr4.3:35542845-35542864 | MS.gene056706:CDS | 45.0% |
| ! | ATGGTTTAACGCCGGTGTTA+GGG | + | chr4.3:35542760-35542779 | MS.gene056706:CDS | 45.0% |
| ! | GGAGAAGCAATTGTTGTTGC+CGG | + | chr4.3:35541754-35541773 | MS.gene056706:CDS | 45.0% |
| ! | TCTGGAATTGCATTCAACGC+CGG | - | chr4.3:35541890-35541909 | None:intergenic | 45.0% |
| !! | CACCCTATCCCTTTTGAGAA+GGG | - | chr4.3:35541519-35541538 | None:intergenic | 45.0% |
| !! | CTATCCCTTTTGAGAAGGGT+TGG | - | chr4.3:35541515-35541534 | None:intergenic | 45.0% |
| !! | GTTAGGGTTGGTGTTGGTAT+TGG | + | chr4.3:35542776-35542795 | MS.gene056706:CDS | 45.0% |
| ACCAACACCAACCCTAACAC+CGG | - | chr4.3:35542774-35542793 | None:intergenic | 50.0% | |
| CATGGTTTAACGCCGGTGTT+AGG | + | chr4.3:35542759-35542778 | MS.gene056706:CDS | 50.0% | |
| CCTTCTCAAAAGGGATAGGG+TGG | + | chr4.3:35541517-35541536 | MS.gene056706:CDS | 50.0% | |
| CGATAAAGGGTTCGTTACCG+TGG | + | chr4.3:35541339-35541358 | MS.gene056706:CDS | 50.0% | |
| CGGTAACGAACCCTTTATCG+AGG | - | chr4.3:35541339-35541358 | None:intergenic | 50.0% | |
| GCGAAGATGGGGAACTTTCA+TGG | + | chr4.3:35542741-35542760 | MS.gene056706:CDS | 50.0% | |
| TAGCCGTCTTCTGAATTGGC+CGG | - | chr4.3:35542867-35542886 | None:intergenic | 50.0% | |
| TATATTGCCGGGTCCTTCTC+TGG | + | chr4.3:35541803-35541822 | MS.gene056706:CDS | 50.0% | |
| TGACAACACGGAGTCACACA+TGG | - | chr4.3:35542063-35542082 | None:intergenic | 50.0% | |
| ! | CTTGGAATCGGCATTGGAGT+TGG | + | chr4.3:35542812-35542831 | MS.gene056706:CDS | 50.0% |
| ! | GGGTGGTAGTGTGAAGTTTG+AGG | + | chr4.3:35541589-35541608 | MS.gene056706:CDS | 50.0% |
| ! | TTTAACGCCGGTGTTAGGGT+TGG | + | chr4.3:35542764-35542783 | MS.gene056706:CDS | 50.0% |
| !! | CCACCCTATCCCTTTTGAGA+AGG | - | chr4.3:35541520-35541539 | None:intergenic | 50.0% |
| ACCTGCAAAGCAAGCGCAGA+AGG | - | chr4.3:35541941-35541960 | None:intergenic | 55.0% | |
| ATACGCTGACGGCGAAGATG+GGG | + | chr4.3:35542730-35542749 | MS.gene056706:CDS | 55.0% | |
| CATACGCTGACGGCGAAGAT+GGG | + | chr4.3:35542729-35542748 | MS.gene056706:CDS | 55.0% | |
| CCACCGGCCAATTCAGAAGA+CGG | + | chr4.3:35542861-35542880 | MS.gene056706:CDS | 55.0% | |
| TCCTTCTGCGCTTGCTTTGC+AGG | + | chr4.3:35541937-35541956 | MS.gene056706:CDS | 55.0% | |
| ! | GATGATCGGAGTGCCAGAGA+AGG | - | chr4.3:35541819-35541838 | None:intergenic | 55.0% |
| CCGTCTTCTGAATTGGCCGG+TGG | - | chr4.3:35542864-35542883 | None:intergenic | 60.0% | |
| GCATACGCTGACGGCGAAGA+TGG | + | chr4.3:35542728-35542747 | MS.gene056706:CDS | 60.0% | |
| TGAATTGGCCGGTGGCACCT+TGG | - | chr4.3:35542856-35542875 | None:intergenic | 60.0% | |
| !! | GCCGGTGTTAGGGTTGGTGT+TGG | + | chr4.3:35542770-35542789 | MS.gene056706:CDS | 60.0% |
| GCCTGCATGTGCTCTCGAGC+CGG | - | chr4.3:35542483-35542502 | None:intergenic | 65.0% | |
| TGCATGTGCTCTCGAGCCGG+AGG | - | chr4.3:35542480-35542499 | None:intergenic | 65.0% | |
| ! | CGGAGTGCCAGAGAAGGACC+CGG | - | chr4.3:35541813-35541832 | None:intergenic | 65.0% |
| ! | TCCGGCTCGAGAGCACATGC+AGG | + | chr4.3:35542479-35542498 | MS.gene056706:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 35541254 | 35542892 | 35541254 | ID=MS.gene056706 |
| chr4.3 | mRNA | 35541254 | 35542892 | 35541254 | ID=MS.gene056706.t1;Parent=MS.gene056706 |
| chr4.3 | exon | 35541254 | 35541958 | 35541254 | ID=MS.gene056706.t1.exon1;Parent=MS.gene056706.t1 |
| chr4.3 | CDS | 35541254 | 35541958 | 35541254 | ID=cds.MS.gene056706.t1;Parent=MS.gene056706.t1 |
| chr4.3 | exon | 35542665 | 35542892 | 35542665 | ID=MS.gene056706.t1.exon2;Parent=MS.gene056706.t1 |
| chr4.3 | CDS | 35542665 | 35542892 | 35542665 | ID=cds.MS.gene056706.t1;Parent=MS.gene056706.t1 |
| Gene Sequence |
| Protein sequence |
