Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056713.t1 | XP_003627593.1 | 97.6 | 168 | 4 | 0 | 1 | 168 | 1 | 168 | 3.70E-84 | 320.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056713.t1 | Q9M2E2 | 58.8 | 170 | 68 | 2 | 1 | 168 | 1 | 170 | 5.6e-49 | 195.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056713.t1 | G7LBT1 | 97.6 | 168 | 4 | 0 | 1 | 168 | 1 | 168 | 2.7e-84 | 320.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056713 | MS.gene056714 | 0.827237 | 1.75E-54 | -1.69E-46 |
| MS.gene056713 | MS.gene08632 | 0.805296 | 1.43E-49 | -1.69E-46 |
| MS.gene056713 | MS.gene26475 | 0.800716 | 1.27E-48 | -1.69E-46 |
| MS.gene056713 | MS.gene81504 | 0.805078 | 1.59E-49 | -1.69E-46 |
| MS.gene056713 | MS.gene81505 | 0.819558 | 1.09E-52 | -1.69E-46 |
| MS.gene056713 | MS.gene81506 | 0.816052 | 6.75E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056713.t1 | MTR_8g031900 | 97.619 | 168 | 4 | 0 | 1 | 168 | 1 | 168 | 1.99e-116 | 332 |
| MS.gene056713.t1 | MTR_8g031850 | 88.652 | 141 | 12 | 1 | 1 | 141 | 1 | 137 | 1.46e-82 | 244 |
| MS.gene056713.t1 | MTR_7g076665 | 69.512 | 164 | 48 | 2 | 7 | 168 | 7 | 170 | 1.61e-73 | 223 |
| MS.gene056713.t1 | MTR_8g031940 | 61.272 | 173 | 62 | 2 | 1 | 168 | 1 | 173 | 7.50e-68 | 208 |
| MS.gene056713.t1 | MTR_8g031630 | 57.895 | 171 | 69 | 1 | 1 | 168 | 1 | 171 | 1.24e-65 | 202 |
| MS.gene056713.t1 | MTR_8g032030 | 57.627 | 177 | 69 | 2 | 1 | 171 | 1 | 177 | 3.22e-64 | 197 |
| MS.gene056713.t1 | MTR_8g031600 | 57.558 | 172 | 68 | 2 | 1 | 168 | 1 | 171 | 4.91e-64 | 199 |
| MS.gene056713.t1 | MTR_8g032000 | 57.471 | 174 | 69 | 2 | 1 | 169 | 1 | 174 | 2.01e-63 | 197 |
| MS.gene056713.t1 | MTR_8g031650 | 57.895 | 171 | 69 | 1 | 1 | 168 | 1 | 171 | 6.96e-63 | 202 |
| MS.gene056713.t1 | MTR_8g031650 | 56.790 | 162 | 67 | 1 | 10 | 168 | 270 | 431 | 4.23e-57 | 187 |
| MS.gene056713.t1 | MTR_8g031990 | 57.225 | 173 | 69 | 2 | 1 | 168 | 1 | 173 | 5.52e-61 | 191 |
| MS.gene056713.t1 | MTR_8g031980 | 55.491 | 173 | 72 | 2 | 1 | 168 | 1 | 173 | 6.29e-61 | 191 |
| MS.gene056713.t1 | MTR_8g031960 | 57.485 | 167 | 66 | 2 | 7 | 168 | 8 | 174 | 7.66e-61 | 191 |
| MS.gene056713.t1 | MTR_5g062280 | 55.233 | 172 | 74 | 1 | 1 | 169 | 1 | 172 | 1.45e-60 | 190 |
| MS.gene056713.t1 | MTR_8g032010 | 57.225 | 173 | 69 | 2 | 1 | 168 | 1 | 173 | 3.89e-60 | 189 |
| MS.gene056713.t1 | MTR_8g031610 | 56.364 | 165 | 67 | 2 | 8 | 168 | 6 | 169 | 2.30e-59 | 186 |
| MS.gene056713.t1 | MTR_8g031650 | 56.790 | 162 | 67 | 1 | 10 | 168 | 104 | 265 | 1.55e-58 | 187 |
| MS.gene056713.t1 | MTR_8g032020 | 56.977 | 172 | 68 | 3 | 3 | 168 | 4 | 175 | 1.30e-57 | 182 |
| MS.gene056713.t1 | MTR_7g076655 | 57.055 | 163 | 63 | 3 | 1 | 163 | 1 | 156 | 1.78e-57 | 181 |
| MS.gene056713.t1 | MTR_8g031910 | 56.213 | 169 | 66 | 4 | 1 | 168 | 1 | 162 | 3.37e-57 | 181 |
| MS.gene056713.t1 | MTR_7g076660 | 55.952 | 168 | 67 | 3 | 1 | 168 | 1 | 161 | 4.58e-57 | 181 |
| MS.gene056713.t1 | MTR_7g076660 | 55.556 | 162 | 65 | 3 | 7 | 168 | 8 | 162 | 1.14e-54 | 174 |
| MS.gene056713.t1 | MTR_3g079320 | 52.299 | 174 | 72 | 4 | 5 | 168 | 9 | 181 | 1.55e-48 | 159 |
| MS.gene056713.t1 | MTR_7g106800 | 49.701 | 167 | 55 | 2 | 7 | 168 | 9 | 151 | 2.86e-46 | 152 |
| MS.gene056713.t1 | MTR_7g076660 | 55.245 | 143 | 57 | 3 | 26 | 168 | 2 | 137 | 9.32e-46 | 151 |
| MS.gene056713.t1 | MTR_3g098470 | 41.875 | 160 | 71 | 3 | 9 | 167 | 37 | 175 | 2.93e-33 | 120 |
| MS.gene056713.t1 | MTR_1g031180 | 39.130 | 161 | 76 | 3 | 9 | 168 | 42 | 181 | 1.34e-32 | 118 |
| MS.gene056713.t1 | MTR_4g087460 | 40.828 | 169 | 71 | 6 | 9 | 167 | 24 | 173 | 6.80e-24 | 95.5 |
| MS.gene056713.t1 | MTR_8g096060 | 35.000 | 160 | 79 | 3 | 9 | 167 | 39 | 174 | 1.03e-23 | 95.1 |
| MS.gene056713.t1 | MTR_5g083430 | 54.430 | 79 | 16 | 1 | 90 | 168 | 1 | 59 | 5.00e-19 | 80.1 |
| MS.gene056713.t1 | MTR_6g041980 | 30.380 | 158 | 81 | 3 | 10 | 162 | 70 | 203 | 1.27e-11 | 62.0 |
| MS.gene056713.t1 | MTR_6g041980 | 30.189 | 159 | 82 | 3 | 9 | 162 | 69 | 203 | 1.37e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056713.t1 | AT3G61220 | 58.824 | 170 | 68 | 2 | 1 | 168 | 1 | 170 | 5.82e-66 | 203 |
| MS.gene056713.t1 | AT2G24190 | 57.647 | 170 | 70 | 2 | 1 | 168 | 1 | 170 | 3.69e-65 | 201 |
| MS.gene056713.t1 | AT3G61220 | 59.756 | 164 | 64 | 2 | 7 | 168 | 14 | 177 | 4.63e-64 | 199 |
| MS.gene056713.t1 | AT3G61220 | 59.756 | 164 | 64 | 2 | 7 | 168 | 38 | 201 | 1.11e-63 | 199 |
| MS.gene056713.t1 | AT2G24190 | 57.927 | 164 | 67 | 2 | 7 | 168 | 12 | 175 | 4.81e-63 | 196 |
| MS.gene056713.t1 | AT1G01800 | 51.479 | 169 | 78 | 3 | 4 | 168 | 2 | 170 | 7.87e-53 | 170 |
| MS.gene056713.t1 | AT5G61830 | 45.342 | 161 | 64 | 4 | 9 | 166 | 39 | 178 | 1.46e-32 | 118 |
| MS.gene056713.t1 | AT5G61830 | 45.342 | 161 | 64 | 4 | 9 | 166 | 39 | 178 | 1.46e-32 | 118 |
| MS.gene056713.t1 | AT3G59710 | 43.038 | 158 | 69 | 4 | 9 | 165 | 21 | 158 | 7.10e-31 | 113 |
| MS.gene056713.t1 | AT3G59710 | 43.038 | 158 | 69 | 4 | 9 | 165 | 31 | 168 | 7.14e-31 | 113 |
| MS.gene056713.t1 | AT3G59710 | 43.038 | 158 | 69 | 4 | 9 | 165 | 50 | 187 | 7.18e-31 | 114 |
| MS.gene056713.t1 | AT5G51030 | 35.152 | 165 | 85 | 3 | 5 | 168 | 36 | 179 | 7.01e-29 | 108 |
| MS.gene056713.t1 | AT1G01800 | 44.444 | 81 | 43 | 1 | 90 | 168 | 55 | 135 | 1.21e-15 | 72.4 |
| MS.gene056713.t1 | AT5G50600 | 33.333 | 153 | 83 | 4 | 10 | 162 | 51 | 184 | 6.44e-14 | 68.6 |
| MS.gene056713.t1 | AT5G50700 | 33.333 | 153 | 83 | 4 | 10 | 162 | 51 | 184 | 6.44e-14 | 68.6 |
| MS.gene056713.t1 | AT3G47350 | 31.373 | 153 | 86 | 4 | 10 | 162 | 50 | 183 | 3.57e-11 | 60.5 |
| MS.gene056713.t1 | AT3G47350 | 30.769 | 156 | 89 | 4 | 7 | 162 | 47 | 183 | 4.70e-11 | 60.5 |
Find 37 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTCATCAAAATCCAATT+TGG | 0.251329 | 8.4:+65177651 | MS.gene056713:CDS |
| TTATGGGATATGCAAGAAAT+TGG | 0.259442 | 8.4:+65177479 | MS.gene056713:CDS |
| AGATATCAAGCTTCCCAAAT+TGG | 0.260041 | 8.4:-65177665 | None:intergenic |
| TGGAGAGAATGTTGTTAAAA+AGG | 0.269327 | 8.4:+65177814 | MS.gene056713:CDS |
| ACTTGTAACAGGAGCTAATA+AGG | 0.275992 | 8.4:+65177449 | MS.gene056713:CDS |
| TGTGTAGAAATAAACTTCTT+TGG | 0.305048 | 8.4:+65179296 | MS.gene056713:CDS |
| GCTAATAAGGGAATTGGTTA+TGG | 0.306274 | 8.4:+65177462 | MS.gene056713:CDS |
| GTGAACAATGCTGGTGTTGC+TGG | 0.318704 | 8.4:+65177779 | MS.gene056713:CDS |
| TCTAGGTATGCACTTGTAAC+AGG | 0.329038 | 8.4:+65177438 | MS.gene056713:intron |
| ATTTGGGAAGCTTGATATCT+TGG | 0.349168 | 8.4:+65177668 | MS.gene056713:CDS |
| ATTGGCTTCAAGAGGTGTTA+TGG | 0.387557 | 8.4:+65177497 | MS.gene056713:CDS |
| GTAGAAAGTTTGAAAGAGTT+AGG | 0.388081 | 8.4:+65177561 | MS.gene056713:CDS |
| CAATGACAGAAGCATCAAAA+AGG | 0.391122 | 8.4:+65177302 | None:intergenic |
| AGTTCATCAAAATCCAATTT+GGG | 0.398379 | 8.4:+65177652 | MS.gene056713:CDS |
| ACTAAAGAAGAAACACTTGT+AGG | 0.407989 | 8.4:-65177627 | None:intergenic |
| ACAGGAGCTAATAAGGGAAT+TGG | 0.408672 | 8.4:+65177456 | MS.gene056713:CDS |
| CTCTAGACGTGGACAATTCA+AGG | 0.411127 | 8.4:+65179391 | MS.gene056713:CDS |
| GTTTATTTCTACACATTCTT+CGG | 0.422875 | 8.4:-65179288 | None:intergenic |
| TCGGCATAGGTTGGAACTTA+GGG | 0.425834 | 8.4:+65180016 | MS.gene056713:intron |
| AGAGGAGACATTAACAATCC+TGG | 0.437672 | 8.4:-65179372 | None:intergenic |
| CTAATAAGGGAATTGGTTAT+GGG | 0.448020 | 8.4:+65177463 | MS.gene056713:CDS |
| GTCGGCATAGGTTGGAACTT+AGG | 0.465628 | 8.4:+65180015 | MS.gene056713:intron |
| CTAAAGAAGAAACACTTGTA+GGG | 0.491807 | 8.4:-65177626 | None:intergenic |
| ACTGCTAGAAATGAGAAAAG+AGG | 0.505341 | 8.4:+65177528 | MS.gene056713:CDS |
| TGAAGTAGATAGTTGGAGCA+AGG | 0.513117 | 8.4:-65179348 | None:intergenic |
| TCCTGGGTGAAGTAGATAGT+TGG | 0.520218 | 8.4:-65179355 | None:intergenic |
| TAAGGGGTGAAATATCTGAT+TGG | 0.521800 | 8.4:+65179234 | MS.gene056713:CDS |
| GAGGAGACATTAACAATCCT+GGG | 0.537675 | 8.4:-65179371 | None:intergenic |
| CTTGTAACAGGAGCTAATAA+GGG | 0.542533 | 8.4:+65177450 | MS.gene056713:CDS |
| CTTGAATTGTCCACGTCTAG+AGG | 0.553769 | 8.4:-65179390 | None:intergenic |
| GAAGTAGATAGTTGGAGCAA+GGG | 0.569135 | 8.4:-65179347 | None:intergenic |
| TTGGTGTAGGTGAACAATGC+TGG | 0.578381 | 8.4:+65177770 | MS.gene056713:intron |
| TGCAAGAAATTGGCTTCAAG+AGG | 0.591172 | 8.4:+65177489 | MS.gene056713:CDS |
| GTTGCTGGAGGAATAGTGAA+TGG | 0.611511 | 8.4:+65177794 | MS.gene056713:CDS |
| AACAATGCTGGTGTTGCTGG+AGG | 0.655043 | 8.4:+65177782 | MS.gene056713:CDS |
| TCCAACTATCTACTTCACCC+AGG | 0.666566 | 8.4:+65179354 | MS.gene056713:CDS |
| GTTAATGTCTCCTCTAGACG+TGG | 0.686665 | 8.4:+65179380 | MS.gene056713:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAATAATTTTTTTTT+AGG | - | chr8.4:65179072-65179091 | None:intergenic | 0.0% |
| !!! | TAAAAAAAAATTATTTTTTT+TGG | + | chr8.4:65179071-65179090 | MS.gene056713:intron | 0.0% |
| !! | CAGTTAAAATTTATATATAT+AGG | - | chr8.4:65179899-65179918 | None:intergenic | 10.0% |
| !!! | AAATTTTCAAAAGCATATAT+AGG | + | chr8.4:65178574-65178593 | MS.gene056713:intron | 15.0% |
| !!! | ATTAAGTTTATTTACACTTT+TGG | + | chr8.4:65177742-65177761 | MS.gene056713:intron | 15.0% |
| !!! | TACAACTTGTTAAAAAAAAT+AGG | - | chr8.4:65178537-65178556 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTATAGAACACA+AGG | + | chr8.4:65178649-65178668 | MS.gene056713:intron | 15.0% |
| !! | AAAGACAAAAAATGATTACA+TGG | + | chr8.4:65179191-65179210 | MS.gene056713:intron | 20.0% |
| !! | AAGATTCAAAATTGCATTAT+TGG | + | chr8.4:65179617-65179636 | MS.gene056713:intron | 20.0% |
| !! | AATTTGATGAATTCTTATAG+TGG | - | chr8.4:65179592-65179611 | None:intergenic | 20.0% |
| !! | AGTTAATAAGAAGGAAAAAT+CGG | - | chr8.4:65177713-65177732 | None:intergenic | 20.0% |
| !! | ATCGTAAGATAAATATAGTT+TGG | - | chr8.4:65178938-65178957 | None:intergenic | 20.0% |
| !! | TAATTGCATACATATATGAA+AGG | - | chr8.4:65177368-65177387 | None:intergenic | 20.0% |
| !!! | AAGTGATTTTGATTTTAACT+AGG | + | chr8.4:65178823-65178842 | MS.gene056713:intron | 20.0% |
| !!! | TCTTGTATGTTGTATTTTTT+TGG | + | chr8.4:65178058-65178077 | MS.gene056713:intron | 20.0% |
| !!! | TGATTATTTTCTAGACAAAA+TGG | - | chr8.4:65179441-65179460 | None:intergenic | 20.0% |
| !!! | TTACGTAAAACTAACAATTT+TGG | + | chr8.4:65179721-65179740 | MS.gene056713:intron | 20.0% |
| ! | AAGGTTGTGAATATTCATAA+AGG | + | chr8.4:65178668-65178687 | MS.gene056713:intron | 25.0% |
| ! | AGTTCATCAAAATCCAATTT+GGG | + | chr8.4:65177652-65177671 | MS.gene056713:CDS | 25.0% |
| ! | ATATAAAAGATGACTAGAGA+TGG | - | chr8.4:65178036-65178055 | None:intergenic | 25.0% |
| ! | ATATGCATGACAATAGAAAT+GGG | + | chr8.4:65179746-65179765 | MS.gene056713:intron | 25.0% |
| ! | ATGATAGTACTACTAACTAA+GGG | - | chr8.4:65179699-65179718 | None:intergenic | 25.0% |
| ! | ATTCAAAATTGCATTATTGG+CGG | + | chr8.4:65179620-65179639 | MS.gene056713:intron | 25.0% |
| ! | CATCAAATAATGAATTGTTC+TGG | + | chr8.4:65178874-65178893 | MS.gene056713:intron | 25.0% |
| ! | GAAACAAACATGAAACTTAA+AGG | + | chr8.4:65178493-65178512 | MS.gene056713:intron | 25.0% |
| ! | GATATATCAGCTTTACTTAA+CGG | - | chr8.4:65178231-65178250 | None:intergenic | 25.0% |
| ! | TATGATAGTACTACTAACTA+AGG | - | chr8.4:65179700-65179719 | None:intergenic | 25.0% |
| ! | TCACAAATAAAACTTACTTG+CGG | - | chr8.4:65179104-65179123 | None:intergenic | 25.0% |
| ! | TGACAAACAAGTTAATAAGA+AGG | - | chr8.4:65177722-65177741 | None:intergenic | 25.0% |
| ! | TGATGGAAGAAATATGTAAA+AGG | - | chr8.4:65179963-65179982 | None:intergenic | 25.0% |
| ! | TGTGTAGAAATAAACTTCTT+TGG | + | chr8.4:65179296-65179315 | MS.gene056713:CDS | 25.0% |
| !! | AATTGTTGAGATTTTCTACA+TGG | - | chr8.4:65178612-65178631 | None:intergenic | 25.0% |
| !! | ACATAAAAACTTTGGCTTAA+CGG | - | chr8.4:65178208-65178227 | None:intergenic | 25.0% |
| !! | CTTAATTTTGTAAGATCCTA+AGG | + | chr8.4:65179486-65179505 | MS.gene056713:intron | 25.0% |
| !! | TCTGAAACTTAGAAACTTAA+AGG | + | chr8.4:65178462-65178481 | MS.gene056713:intron | 25.0% |
| !!! | ACAAATCAATTTTGGCTTAA+CGG | + | chr8.4:65178328-65178347 | MS.gene056713:intron | 25.0% |
| !!! | ATTTACACTTTTGGAATCAT+TGG | + | chr8.4:65177751-65177770 | MS.gene056713:intron | 25.0% |
| !!! | GTTTATTTCTACACATTCTT+CGG | - | chr8.4:65179291-65179310 | None:intergenic | 25.0% |
| !!! | TAAGATCCTAAGGTTTTATT+TGG | + | chr8.4:65179496-65179515 | MS.gene056713:intron | 25.0% |
| !!! | TGATTTGATTTTGTAGGTAA+GGG | + | chr8.4:65179217-65179236 | MS.gene056713:intron | 25.0% |
| !!! | TGGTATTGATTTGATTTTGT+AGG | + | chr8.4:65179211-65179230 | MS.gene056713:intron | 25.0% |
| !!! | TTGATTTGATTTTGTAGGTA+AGG | + | chr8.4:65179216-65179235 | MS.gene056713:intron | 25.0% |
| !!! | TTTAAGTTTCGAGTTTGTTT+CGG | + | chr8.4:65178161-65178180 | MS.gene056713:intron | 25.0% |
| !!! | TTTAAGTTTCGAGTTTGTTT+CGG | - | chr8.4:65178180-65178161 | None:intergenic | 25.0% |
| AAAAAAGAGGCTAAGGAAAA+TGG | - | chr8.4:65177335-65177354 | None:intergenic | 30.0% | |
| AAAAACACTCTCTCATATCT+TGG | + | chr8.4:65179852-65179871 | MS.gene056713:intron | 30.0% | |
| ACCTAGAAACAAGATTAACA+AGG | - | chr8.4:65177425-65177444 | None:intergenic | 30.0% | |
| ACTAAAGAAGAAACACTTGT+AGG | - | chr8.4:65177630-65177649 | None:intergenic | 30.0% | |
| ATTTAGACCCTCAGTAATTA+CGG | + | chr8.4:65179643-65179662 | MS.gene056713:intron | 30.0% | |
| CAAATTAATCTTCAGATTGC+AGG | - | chr8.4:65179168-65179187 | None:intergenic | 30.0% | |
| CTAAAGAAGAAACACTTGTA+GGG | - | chr8.4:65177629-65177648 | None:intergenic | 30.0% | |
| CTAATAAGGGAATTGGTTAT+GGG | + | chr8.4:65177463-65177482 | MS.gene056713:CDS | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr8.4:65178403-65178422 | MS.gene056713:intron | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | - | chr8.4:65178422-65178403 | None:intergenic | 30.0% | |
| CTGCAATCTGAAGATTAATT+TGG | + | chr8.4:65179166-65179185 | MS.gene056713:intron | 30.0% | |
| GAAACAAACGTGAAACTTAA+AGG | - | chr8.4:65178102-65178121 | None:intergenic | 30.0% | |
| GAAACAAACTCGAAACTTAA+AGG | + | chr8.4:65178374-65178393 | MS.gene056713:intron | 30.0% | |
| GAAACAAACTCGAAACTTAA+AGG | - | chr8.4:65178393-65178374 | None:intergenic | 30.0% | |
| GAGTTCATCAAAATCCAATT+TGG | + | chr8.4:65177651-65177670 | MS.gene056713:CDS | 30.0% | |
| GATATGCATGACAATAGAAA+TGG | + | chr8.4:65179745-65179764 | MS.gene056713:intron | 30.0% | |
| GTAGAAAGTTTGAAAGAGTT+AGG | + | chr8.4:65177561-65177580 | MS.gene056713:CDS | 30.0% | |
| TAACAACAAGCTTGATCATA+AGG | + | chr8.4:65177386-65177405 | MS.gene056713:intron | 30.0% | |
| TATGTTAACTTTCCGATTCT+CGG | - | chr8.4:65178989-65179008 | None:intergenic | 30.0% | |
| TGGAGAGAATGTTGTTAAAA+AGG | + | chr8.4:65177814-65177833 | MS.gene056713:CDS | 30.0% | |
| TTAACTAGGTTATTAAGCTC+AGG | + | chr8.4:65178837-65178856 | MS.gene056713:intron | 30.0% | |
| TTATGGGATATGCAAGAAAT+TGG | + | chr8.4:65177479-65177498 | MS.gene056713:CDS | 30.0% | |
| TTCCACCTAAAAATTGAACT+CGG | - | chr8.4:65178905-65178924 | None:intergenic | 30.0% | |
| ! | ACCTTGTTAATCTTGTTTCT+AGG | + | chr8.4:65177421-65177440 | MS.gene056713:intron | 30.0% |
| ! | AGGGTTTTTCTGCATTATTT+AGG | - | chr8.4:65179680-65179699 | None:intergenic | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | + | chr8.4:65178124-65178143 | MS.gene056713:intron | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | - | chr8.4:65178143-65178124 | None:intergenic | 30.0% |
| ! | CAAAAGCATATATAGGTTGT+TGG | + | chr8.4:65178581-65178600 | MS.gene056713:intron | 30.0% |
| ! | CTTAACGGACATAAAAACTT+TGG | - | chr8.4:65178216-65178235 | None:intergenic | 30.0% |
| ! | GGGTTTTTCTGCATTATTTA+GGG | - | chr8.4:65179679-65179698 | None:intergenic | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr8.4:65178135-65178154 | MS.gene056713:intron | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | - | chr8.4:65178154-65178135 | None:intergenic | 30.0% |
| !! | CTTAACGGACAAATCAATTT+TGG | + | chr8.4:65178320-65178339 | MS.gene056713:intron | 30.0% |
| !! | GATTTGATTTTGTAGGTAAG+GGG | + | chr8.4:65179218-65179237 | MS.gene056713:intron | 30.0% |
| AACATGAAACTTAAAGGACC+TGG | + | chr8.4:65178499-65178518 | MS.gene056713:intron | 35.0% | |
| AAGCATATATAGGTTGTTGG+AGG | + | chr8.4:65178584-65178603 | MS.gene056713:intron | 35.0% | |
| AAGCTGATATATCCGTTAAG+TGG | + | chr8.4:65178238-65178257 | MS.gene056713:intron | 35.0% | |
| AATCGTCCGATTGGAATTTA+TGG | + | chr8.4:65179989-65180008 | MS.gene056713:intron | 35.0% | |
| ACATGAAACTTAAAGGACCT+GGG | + | chr8.4:65178500-65178519 | MS.gene056713:intron | 35.0% | |
| ACTGCTAGAAATGAGAAAAG+AGG | + | chr8.4:65177528-65177547 | MS.gene056713:CDS | 35.0% | |
| ACTTGTAACAGGAGCTAATA+AGG | + | chr8.4:65177449-65177468 | MS.gene056713:CDS | 35.0% | |
| AGATATCAAGCTTCCCAAAT+TGG | - | chr8.4:65177668-65177687 | None:intergenic | 35.0% | |
| AGCTGATATATCCGTTAAGT+GGG | + | chr8.4:65178239-65178258 | MS.gene056713:intron | 35.0% | |
| AGGTACCTTGAAGAAAAAAG+AGG | - | chr8.4:65177348-65177367 | None:intergenic | 35.0% | |
| ATCGGACGATTAAAACATGA+TGG | - | chr8.4:65179980-65179999 | None:intergenic | 35.0% | |
| ATGTTAACTTTCCGATTCTC+GGG | - | chr8.4:65178988-65179007 | None:intergenic | 35.0% | |
| ATTTGGGAAGCTTGATATCT+TGG | + | chr8.4:65177668-65177687 | MS.gene056713:CDS | 35.0% | |
| CTTGAAGAAAAAAGAGGCTA+AGG | - | chr8.4:65177342-65177361 | None:intergenic | 35.0% | |
| CTTGTAACAGGAGCTAATAA+GGG | + | chr8.4:65177450-65177469 | MS.gene056713:CDS | 35.0% | |
| GACATGCCATAAATTCCAAT+CGG | - | chr8.4:65179998-65180017 | None:intergenic | 35.0% | |
| GATTGGAATTTATGGCATGT+CGG | + | chr8.4:65179997-65180016 | MS.gene056713:intron | 35.0% | |
| GCTAATAAGGGAATTGGTTA+TGG | + | chr8.4:65177462-65177481 | MS.gene056713:CDS | 35.0% | |
| GTTATCAAATCCAACCAAGA+TGG | + | chr8.4:65177984-65178003 | MS.gene056713:intron | 35.0% | |
| GTTGTGCCAAATAAAACCTT+AGG | - | chr8.4:65179505-65179524 | None:intergenic | 35.0% | |
| GTTTCACGTTTGTTTCAGAT+AGG | + | chr8.4:65178106-65178125 | MS.gene056713:intron | 35.0% | |
| TAAGGGGTGAAATATCTGAT+TGG | + | chr8.4:65179234-65179253 | MS.gene056713:CDS | 35.0% | |
| TAGTCAAGAATGAGTAGTCA+GGG | + | chr8.4:65178751-65178770 | MS.gene056713:intron | 35.0% | |
| TCCACCTAAAAATTGAACTC+GGG | - | chr8.4:65178904-65178923 | None:intergenic | 35.0% | |
| TTTAGACCCTCAGTAATTAC+GGG | + | chr8.4:65179644-65179663 | MS.gene056713:intron | 35.0% | |
| ! | AGATCCCGAGTTCAATTTTT+AGG | + | chr8.4:65178897-65178916 | MS.gene056713:intron | 35.0% |
| ! | TAAAAACTTTGGCTTAACGG+AGG | - | chr8.4:65178205-65178224 | None:intergenic | 35.0% |
| !! | AAGCATCGTTTAGTCTTGAT+CGG | + | chr8.4:65177897-65177916 | MS.gene056713:intron | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | - | chr8.4:65178370-65178389 | None:intergenic | 35.0% |
| !!! | ACTTTTGGAATCATTGGTGT+AGG | + | chr8.4:65177757-65177776 | MS.gene056713:intron | 35.0% |
| !!! | CTTAGCCTCTTTTTTCTTCA+AGG | + | chr8.4:65177340-65177359 | MS.gene056713:intron | 35.0% |
| !!! | GTTTTATTTGGCACAACACA+CGG | + | chr8.4:65179508-65179527 | MS.gene056713:intron | 35.0% |
| !!! | TCATGTTTTAATCGTCCGAT+TGG | + | chr8.4:65179980-65179999 | MS.gene056713:intron | 35.0% |
| AATAGGTCAAATATCTCCCC+AGG | - | chr8.4:65178520-65178539 | None:intergenic | 40.0% | |
| AATTTATGGCATGTCGGCAT+AGG | + | chr8.4:65180003-65180022 | MS.gene056713:intron | 40.0% | |
| ACAGGAGCTAATAAGGGAAT+TGG | + | chr8.4:65177456-65177475 | MS.gene056713:CDS | 40.0% | |
| AGAGGAGACATTAACAATCC+TGG | - | chr8.4:65179375-65179394 | None:intergenic | 40.0% | |
| AGTCAAGAATGAGTAGTCAG+GGG | + | chr8.4:65178752-65178771 | MS.gene056713:intron | 40.0% | |
| ATATATCCGTTAAGTGGGTG+AGG | + | chr8.4:65178244-65178263 | MS.gene056713:intron | 40.0% | |
| ATGCTGACAACAAGAATGCA+TGG | - | chr8.4:65177875-65177894 | None:intergenic | 40.0% | |
| ATGTGTCAGTAGCATATCCA+CGG | - | chr8.4:65179536-65179555 | None:intergenic | 40.0% | |
| CATGAAACTTAAAGGACCTG+GGG | + | chr8.4:65178501-65178520 | MS.gene056713:intron | 40.0% | |
| GAAGTAGATAGTTGGAGCAA+GGG | - | chr8.4:65179350-65179369 | None:intergenic | 40.0% | |
| GAGGAGACATTAACAATCCT+GGG | - | chr8.4:65179374-65179393 | None:intergenic | 40.0% | |
| GCATGACAATAGAAATGGGT+GGG | + | chr8.4:65179750-65179769 | MS.gene056713:intron | 40.0% | |
| GTAGTCAAGAATGAGTAGTC+AGG | + | chr8.4:65178750-65178769 | MS.gene056713:intron | 40.0% | |
| TCTAGGTATGCACTTGTAAC+AGG | + | chr8.4:65177438-65177457 | MS.gene056713:intron | 40.0% | |
| TGAAGTAGATAGTTGGAGCA+AGG | - | chr8.4:65179351-65179370 | None:intergenic | 40.0% | |
| TGCATGACAATAGAAATGGG+TGG | + | chr8.4:65179749-65179768 | MS.gene056713:intron | 40.0% | |
| ! | CCAGATCAACTTTGGCTTAA+CGG | + | chr8.4:65178305-65178324 | MS.gene056713:intron | 40.0% |
| ! | TGCAAGAAATTGGCTTCAAG+AGG | + | chr8.4:65177489-65177508 | MS.gene056713:CDS | 40.0% |
| !! | AATGGGTGGGCTAAGTTATA+TGG | + | chr8.4:65179763-65179782 | MS.gene056713:intron | 40.0% |
| !! | ATCGTTTAGTCTTGATCGGA+CGG | + | chr8.4:65177901-65177920 | MS.gene056713:intron | 40.0% |
| !! | ATTGGCTTCAAGAGGTGTTA+TGG | + | chr8.4:65177497-65177516 | MS.gene056713:CDS | 40.0% |
| !! | CGATCGATTCGAGATTACTA+TGG | + | chr8.4:65178954-65178973 | MS.gene056713:intron | 40.0% |
| !! | GTTTCGAGTTTGTTTCGGAT+AGG | - | chr8.4:65178185-65178166 | None:intergenic | 40.0% |
| !! | TCCCGAGTTCAATTTTTAGG+TGG | + | chr8.4:65178900-65178919 | MS.gene056713:intron | 40.0% |
| AGACCACCCGTAATTACTGA+GGG | - | chr8.4:65179653-65179672 | None:intergenic | 45.0% | |
| CTCTAGACGTGGACAATTCA+AGG | + | chr8.4:65179391-65179410 | MS.gene056713:CDS | 45.0% | |
| CTTAACGGAGGTTGACAGAA+AGG | - | chr8.4:65178193-65178212 | None:intergenic | 45.0% | |
| CTTGAATTGTCCACGTCTAG+AGG | - | chr8.4:65179393-65179412 | None:intergenic | 45.0% | |
| GAAACTTAAAGGATCCAGCG+AGG | - | chr8.4:65178091-65178110 | None:intergenic | 45.0% | |
| GGGAAGCTTGATATCTTGGT+GGG | + | chr8.4:65177672-65177691 | MS.gene056713:intron | 45.0% | |
| GTTAATGTCTCCTCTAGACG+TGG | + | chr8.4:65179380-65179399 | MS.gene056713:CDS | 45.0% | |
| GTTGCTGGAGGAATAGTGAA+TGG | + | chr8.4:65177794-65177813 | MS.gene056713:CDS | 45.0% | |
| TAGACCACCCGTAATTACTG+AGG | - | chr8.4:65179654-65179673 | None:intergenic | 45.0% | |
| TCCAACTATCTACTTCACCC+AGG | + | chr8.4:65179354-65179373 | MS.gene056713:CDS | 45.0% | |
| TCCTGGGTGAAGTAGATAGT+TGG | - | chr8.4:65179358-65179377 | None:intergenic | 45.0% | |
| TGGGAAGCTTGATATCTTGG+TGG | + | chr8.4:65177671-65177690 | MS.gene056713:intron | 45.0% | |
| TGGTCATCTTTCCCGAGAAT+CGG | + | chr8.4:65178974-65178993 | MS.gene056713:intron | 45.0% | |
| TTCCCAGACCAGATCAACTT+TGG | + | chr8.4:65178297-65178316 | MS.gene056713:intron | 45.0% | |
| TTGGTGTAGGTGAACAATGC+TGG | + | chr8.4:65177770-65177789 | MS.gene056713:intron | 45.0% | |
| ! | AAAGGATCCAGCGAGGTATT+TGG | - | chr8.4:65178084-65178103 | None:intergenic | 45.0% |
| ! | AAGCCAAAGTTGATCTGGTC+TGG | - | chr8.4:65178303-65178322 | None:intergenic | 45.0% |
| ! | AGATGACTTGCACACCATCT+TGG | - | chr8.4:65178001-65178020 | None:intergenic | 45.0% |
| ! | AGCCAAAGTTGATCTGGTCT+GGG | - | chr8.4:65178302-65178321 | None:intergenic | 45.0% |
| ! | CCGTTAAGCCAAAGTTGATC+TGG | - | chr8.4:65178308-65178327 | None:intergenic | 45.0% |
| !! | TTTTTGGCCAAATACCTCGC+TGG | + | chr8.4:65178074-65178093 | MS.gene056713:intron | 45.0% |
| !! | TTTAAATAAATTTAAAAAGT+AGG | + | chr8.4:65177949-65177968 | MS.gene056713:intron | 5.0% |
| !!! | AAATGATTTTAAATTTTAAA+TGG | + | chr8.4:65179015-65179034 | MS.gene056713:intron | 5.0% |
| AGACCCTCAGTAATTACGGG+TGG | + | chr8.4:65179647-65179666 | MS.gene056713:intron | 50.0% | |
| AGGTGGTTCTCTCTGACACT+TGG | + | chr8.4:65178264-65178283 | MS.gene056713:intron | 50.0% | |
| GAACCACCTCACCCACTTAA+CGG | - | chr8.4:65178253-65178272 | None:intergenic | 50.0% | |
| GACTTGCACACCATCTTGGT+TGG | - | chr8.4:65177997-65178016 | None:intergenic | 50.0% | |
| TATCCGTTAAGTGGGTGAGG+TGG | + | chr8.4:65178247-65178266 | MS.gene056713:intron | 50.0% | |
| TATGGCATGTCGGCATAGGT+TGG | + | chr8.4:65180007-65180026 | MS.gene056713:intron | 50.0% | |
| !! | AACAATGCTGGTGTTGCTGG+AGG | + | chr8.4:65177782-65177801 | MS.gene056713:CDS | 50.0% |
| !! | GTGAACAATGCTGGTGTTGC+TGG | + | chr8.4:65177779-65177798 | MS.gene056713:CDS | 50.0% |
| TGGCACAACACACGGTACCG+TGG | + | chr8.4:65179516-65179535 | MS.gene056713:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 65177304 | 65180036 | 65177304 | ID=MS.gene056713 |
| chr8.4 | mRNA | 65177304 | 65180036 | 65177304 | ID=MS.gene056713.t1;Parent=MS.gene056713 |
| chr8.4 | exon | 65177304 | 65177323 | 65177304 | ID=MS.gene056713.t1.exon1;Parent=MS.gene056713.t1 |
| chr8.4 | CDS | 65177304 | 65177323 | 65177304 | ID=cds.MS.gene056713.t1;Parent=MS.gene056713.t1 |
| chr8.4 | exon | 65177443 | 65177689 | 65177443 | ID=MS.gene056713.t1.exon2;Parent=MS.gene056713.t1 |
| chr8.4 | CDS | 65177443 | 65177689 | 65177443 | ID=cds.MS.gene056713.t1;Parent=MS.gene056713.t1 |
| chr8.4 | exon | 65177779 | 65177835 | 65177779 | ID=MS.gene056713.t1.exon3;Parent=MS.gene056713.t1 |
| chr8.4 | CDS | 65177779 | 65177835 | 65177779 | ID=cds.MS.gene056713.t1;Parent=MS.gene056713.t1 |
| chr8.4 | exon | 65179233 | 65179412 | 65179233 | ID=MS.gene056713.t1.exon4;Parent=MS.gene056713.t1 |
| chr8.4 | CDS | 65179233 | 65179412 | 65179233 | ID=cds.MS.gene056713.t1;Parent=MS.gene056713.t1 |
| chr8.4 | exon | 65180025 | 65180036 | 65180025 | ID=MS.gene056713.t1.exon5;Parent=MS.gene056713.t1 |
| chr8.4 | CDS | 65180025 | 65180036 | 65180025 | ID=cds.MS.gene056713.t1;Parent=MS.gene056713.t1 |
| Gene Sequence |
| Protein sequence |
