AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81506


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81506.t1 MTR_2g055940 98.286 350 5 1 12 361 15 363 0.0 708
MS.gene81506.t1 MTR_7g011900 75.354 353 85 2 10 361 19 370 0.0 558
MS.gene81506.t1 MTR_7g011990 68.272 353 107 3 10 361 19 367 0.0 507
MS.gene81506.t1 MTR_7g012020 68.839 353 108 2 10 361 18 369 0.0 506
MS.gene81506.t1 MTR_7g012040 68.839 353 107 3 10 361 18 368 9.66e-179 500
MS.gene81506.t1 MTR_7g012090 63.408 358 124 3 10 361 19 375 3.51e-166 469
MS.gene81506.t1 MTR_7g012070 62.810 363 126 4 5 361 16 375 1.33e-165 468
MS.gene81506.t1 MTR_1g096310 62.465 357 128 4 9 361 18 372 1.22e-162 460
MS.gene81506.t1 MTR_7g012020 71.765 255 70 2 10 263 18 271 2.80e-129 372
MS.gene81506.t1 MTR_1g036460 51.567 351 161 6 17 361 23 370 4.38e-127 369
MS.gene81506.t1 MTR_1g036490 51.852 351 160 7 17 361 23 370 1.06e-126 369
MS.gene81506.t1 MTR_1g036510 51.282 351 162 6 17 361 37 384 5.07e-120 352
MS.gene81506.t1 MTR_3g021440 50.000 364 176 6 1 361 10 370 5.10e-118 346
MS.gene81506.t1 MTR_7g012020 72.034 236 64 2 10 244 18 252 6.53e-118 342
MS.gene81506.t1 MTR_3g021430 51.335 337 160 4 26 361 24 357 4.63e-117 343
MS.gene81506.t1 MTR_3g092900 43.333 360 198 6 4 361 8 363 1.43e-103 309
MS.gene81506.t1 MTR_5g098170 41.899 358 198 9 9 361 11 363 4.96e-90 275
MS.gene81506.t1 MTR_0591s0010 40.173 346 201 6 19 361 35 377 5.33e-86 265
MS.gene81506.t1 MTR_1g050220 44.144 333 130 7 17 344 6 287 1.54e-85 261
MS.gene81506.t1 MTR_7g118320 39.306 346 204 6 19 361 20 362 5.82e-82 254
MS.gene81506.t1 MTR_7g118300 39.326 356 206 8 9 361 27 375 1.15e-81 254
MS.gene81506.t1 MTR_8g068690 37.815 357 215 7 9 361 23 376 6.20e-80 249
MS.gene81506.t1 MTR_1g036510 51.984 252 113 5 17 263 37 285 1.37e-79 246
MS.gene81506.t1 MTR_6g060290 72.941 170 30 2 6 175 17 170 1.71e-79 241
MS.gene81506.t1 MTR_8g068750 37.861 346 209 6 19 361 35 377 1.59e-78 246
MS.gene81506.t1 MTR_8g068870 36.207 348 216 6 17 361 19 363 3.59e-74 234
MS.gene81506.t1 MTR_8g068570 38.339 313 161 7 19 328 35 318 9.24e-68 216
MS.gene81506.t1 MTR_8g024160 36.565 361 178 8 5 361 15 328 1.30e-67 216
MS.gene81506.t1 MTR_1g036510 49.784 231 108 5 17 242 37 264 2.38e-67 213
MS.gene81506.t1 MTR_6g078850 36.286 350 214 7 17 359 37 384 1.13e-65 216
MS.gene81506.t1 MTR_8g068730 35.838 346 184 7 19 361 35 345 1.66e-62 203
MS.gene81506.t1 MTR_2g072790 32.653 343 216 7 10 346 7 340 1.02e-56 189
MS.gene81506.t1 MTR_3g096050 34.637 358 215 10 12 361 12 358 1.10e-55 186
MS.gene81506.t1 MTR_8g068690 37.190 242 148 4 26 265 41 280 6.45e-52 174
MS.gene81506.t1 MTR_3g096070 33.138 341 191 10 12 346 12 321 4.82e-51 173
MS.gene81506.t1 MTR_0017s0100 34.421 337 200 13 32 360 44 367 2.84e-49 169
MS.gene81506.t1 MTR_0079s0070 34.783 322 188 10 32 344 10 318 9.37e-49 167
MS.gene81506.t1 MTR_4g038440 34.675 323 189 10 31 344 43 352 1.88e-48 167
MS.gene81506.t1 MTR_8g068600 36.681 229 141 4 37 263 27 253 7.57e-45 155
MS.gene81506.t1 MTR_8g068740 35.632 261 132 5 19 277 35 261 5.58e-44 153
MS.gene81506.t1 MTR_3g083620 32.278 316 199 8 30 341 38 342 2.31e-43 154
MS.gene81506.t1 MTR_5g074600 31.387 274 173 7 96 360 91 358 4.79e-43 153
MS.gene81506.t1 MTR_5g074680 29.532 342 212 10 32 360 34 359 1.62e-42 152
MS.gene81506.t1 MTR_4g088340 28.994 338 222 8 29 360 7 332 3.29e-39 142
MS.gene81506.t1 MTR_4g088345 28.402 338 224 7 29 360 30 355 5.51e-39 142
MS.gene81506.t1 MTR_5g074540 34.101 217 132 4 137 345 113 326 7.94e-38 139
MS.gene81506.t1 MTR_3g096050 35.294 255 155 6 12 263 12 259 1.23e-37 136
MS.gene81506.t1 MTR_5g074580 27.566 341 220 11 32 360 34 359 1.62e-37 138
MS.gene81506.t1 MTR_1g076940 28.349 321 218 6 31 345 32 346 8.57e-37 136
MS.gene81506.t1 MTR_4g033015 29.851 335 221 8 31 356 32 361 1.37e-35 133
MS.gene81506.t1 MTR_4g088200 29.721 323 211 9 31 345 32 346 8.10e-35 131
MS.gene81506.t1 MTR_4g033200 29.552 335 222 8 31 356 32 361 9.81e-35 131
MS.gene81506.t1 MTR_7g014570 31.915 235 149 5 132 360 122 351 1.83e-34 130
MS.gene81506.t1 MTR_4g079160 34.694 196 120 4 156 345 147 340 2.78e-34 129
MS.gene81506.t1 MTR_4g033150 29.254 335 223 8 31 356 32 361 4.87e-34 129
MS.gene81506.t1 MTR_7g024520 33.824 204 129 4 160 359 147 348 5.20e-34 129
MS.gene81506.t1 MTR_8g068620 47.273 110 58 0 155 264 2 111 1.12e-33 121
MS.gene81506.t1 MTR_7g014510 26.471 306 209 6 60 360 62 356 1.48e-33 127
MS.gene81506.t1 MTR_7g024500 34.031 191 121 3 159 345 146 335 2.26e-33 127
MS.gene81506.t1 MTR_4g088190 30.031 323 213 8 31 345 32 349 4.38e-30 118
MS.gene81506.t1 MTR_5g074610 29.098 244 139 5 123 360 110 325 4.55e-30 117
MS.gene81506.t1 MTR_4g038440 34.310 239 138 7 32 263 44 270 2.23e-29 114
MS.gene81506.t1 MTR_4g033170 29.924 264 160 8 31 285 32 279 8.26e-26 106
MS.gene81506.t1 MTR_4g033085 29.658 263 160 8 31 284 32 278 2.11e-24 102
MS.gene81506.t1 MTR_6g060280 69.355 62 13 2 216 272 2 62 3.38e-20 84.0
MS.gene81506.t1 MTR_1g076930 24.790 238 169 5 29 263 7 237 3.46e-20 89.0
MS.gene81506.t1 MTR_8g068760 38.000 100 60 2 263 361 135 233 5.76e-16 76.6
MS.gene81506.t1 MTR_0794s0020 25.792 221 157 5 31 248 32 248 6.66e-15 73.9
MS.gene81506.t1 MTR_8g068580 42.391 92 51 2 271 361 43 133 1.37e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81506.t1 AT5G54160 44.290 359 194 6 4 361 8 361 1.88e-103 309
MS.gene81506.t1 AT1G77520 38.136 354 209 7 16 361 30 381 2.58e-82 256
MS.gene81506.t1 AT1G51990 39.879 331 193 5 15 341 15 343 2.79e-82 255
MS.gene81506.t1 AT1G51990 39.577 331 194 5 15 341 15 343 4.69e-82 254
MS.gene81506.t1 AT1G77530 40.678 354 200 7 16 361 30 381 2.58e-78 245
MS.gene81506.t1 AT1G33030 39.535 344 195 8 19 355 10 347 9.53e-78 243
MS.gene81506.t1 AT1G63140 37.228 368 219 9 4 361 16 381 7.87e-76 239
MS.gene81506.t1 AT1G63140 37.228 368 219 9 4 361 36 401 1.68e-75 239
MS.gene81506.t1 AT5G53810 38.012 342 201 8 29 361 39 378 1.29e-69 223
MS.gene81506.t1 AT1G21100 39.244 344 194 9 17 351 27 364 2.65e-69 222
MS.gene81506.t1 AT1G21130 38.953 344 195 9 17 351 27 364 4.71e-68 219
MS.gene81506.t1 AT1G21110 38.663 344 196 9 17 351 27 364 2.46e-66 214
MS.gene81506.t1 AT1G21120 38.372 344 197 9 17 351 27 364 2.77e-65 211
MS.gene81506.t1 AT1G21120 38.372 344 197 9 17 351 75 412 7.49e-65 212
MS.gene81506.t1 AT1G76790 37.709 358 201 9 17 361 17 365 2.19e-64 209
MS.gene81506.t1 AT3G53140 34.503 342 200 8 17 345 14 344 1.11e-58 194
MS.gene81506.t1 AT1G62900 42.233 206 116 3 158 361 1 205 2.75e-57 185
MS.gene81506.t1 AT5G37170 41.414 198 112 4 167 361 38 234 2.66e-51 171
MS.gene81506.t1 AT5G37170 32.831 332 182 9 38 361 36 334 3.90e-51 174
MS.gene81506.t1 AT1G33030 39.600 250 145 5 19 266 10 255 7.63e-51 171
MS.gene81506.t1 AT1G33030 39.676 247 143 5 19 263 10 252 3.31e-50 169
MS.gene81506.t1 AT5G37170 41.176 187 106 4 178 361 1 186 4.57e-48 161
MS.gene81506.t1 AT1G63140 35.448 268 164 6 4 263 36 302 1.27e-43 153
MS.gene81506.t1 AT1G77530 38.298 235 138 4 16 244 30 263 2.54e-39 141
MS.gene81506.t1 AT1G21130 37.795 254 145 7 17 263 27 274 1.33e-38 139
MS.gene81506.t1 AT4G35150 31.687 243 148 7 120 345 68 309 4.13e-38 139
MS.gene81506.t1 AT4G35160 33.840 263 150 8 102 345 109 366 4.25e-36 135
MS.gene81506.t1 AT1G63140 34.137 249 155 6 4 244 36 283 3.95e-33 125

Find 79 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTTTATTGATGGGTATT+TGG 0.140968 2.1:+36274926 None:intergenic
GGTACTACTTTGAGAGTTTA+TGG 0.145146 2.1:-36275398 MS.gene81506:CDS
GACGCATCTCGATTCATTTA+TGG 0.185909 2.1:-36274412 MS.gene81506:CDS
TGAAAATGATGGTGGTTATT+TGG 0.190360 2.1:-36275342 MS.gene81506:CDS
GACCTATTCAAGAAAGTTAA+TGG 0.210657 2.1:-36275131 MS.gene81506:CDS
TTTGAAAGAATATGAAAGTT+TGG 0.223106 2.1:-36274344 MS.gene81506:CDS
TGCCAAATACCCATCAATAA+AGG 0.282531 2.1:-36274928 MS.gene81506:CDS
AAGACACGATCGAGTCTATT+TGG 0.300123 2.1:+36275479 None:intergenic
CGAGATGCGTCTGTTGGTTC+TGG 0.300236 2.1:+36274424 None:intergenic
GTTTATGGGGTCACTTCTTC+TGG 0.301463 2.1:-36275383 MS.gene81506:CDS
GAAAATGATGGTGGTTATTT+GGG 0.319757 2.1:-36275341 MS.gene81506:CDS
TTCCATTAACTTTCTTGAAT+AGG 0.343440 2.1:+36275129 None:intergenic
TTGAAAGAATATGAAAGTTT+GGG 0.349066 2.1:-36274343 MS.gene81506:CDS
CACACTGACCTTAAGTAGTA+TGG 0.352819 2.1:+36274689 None:intergenic
AAAGCCTTGTGACAAGTAAA+TGG 0.354130 2.1:+36275308 None:intergenic
ACTTGTCACAAGGCTTTGTT+TGG 0.367785 2.1:-36275302 MS.gene81506:CDS
TTTAGAGTGTATGCCATAAC+TGG 0.370585 2.1:-36274543 MS.gene81506:intron
CATTTAGGGATCCAACATAT+TGG 0.374317 2.1:-36274747 MS.gene81506:intron
ACACTCTCTGCTATGGTGTT+AGG 0.375320 2.1:-36275638 MS.gene81506:CDS
GTACTACTTTGAGAGTTTAT+GGG 0.376400 2.1:-36275397 MS.gene81506:CDS
GGTAAGTCGGAGTGTTGATT+TGG 0.380815 2.1:+36275500 None:intergenic
AAATTGATTCCCTTTATTGA+TGG 0.391826 2.1:+36274918 None:intergenic
GCCAAATACCCATCAATAAA+GGG 0.393194 2.1:-36274927 MS.gene81506:CDS
ATCATCGTCGTTGGTGCGAT+TGG 0.398696 2.1:+36275421 None:intergenic
TCTGTTGGTTCTGGAACATC+TGG 0.401209 2.1:+36274433 None:intergenic
TATGGTGTTAGGTTCTGTTA+TGG 0.402609 2.1:-36275627 MS.gene81506:CDS
ATGATAATGACCTTTCCATT+TGG 0.411682 2.1:+36274469 None:intergenic
GAAAGTTTGGGTAAACGATC+TGG 0.423215 2.1:-36274331 MS.gene81506:CDS
CACAAAGCTTTACCACCAAA+TGG 0.425024 2.1:-36274484 MS.gene81506:CDS
AGGAGATGCCATACTACTTA+AGG 0.430145 2.1:-36274697 MS.gene81506:intron
ATCATTGCTACCAGCAATGA+TGG 0.439107 2.1:-36275557 MS.gene81506:CDS
AATTGATTCCCTTTATTGAT+GGG 0.443973 2.1:+36274919 None:intergenic
ATATCTATGTATGAGTACTT+TGG 0.452220 2.1:-36275107 MS.gene81506:CDS
TGACATAAATCCATCATTGC+TGG 0.459057 2.1:+36275547 None:intergenic
ATTGTTCATCCGACCAGTTA+TGG 0.467416 2.1:+36274530 None:intergenic
GGAACTCACACCTCACAAAC+AGG 0.473367 2.1:-36275675 MS.gene81506:CDS
ATAATGACCTTTCCATTTGG+TGG 0.479304 2.1:+36274472 None:intergenic
CAAGGAAGTAATAGTGAATG+AGG 0.480422 2.1:-36275159 MS.gene81506:CDS
ATCTCGATTCATTTATGGTA+TGG 0.481444 2.1:-36274407 MS.gene81506:CDS
TCTTGAGGGAGTATCAACTA+TGG 0.481625 2.1:-36274994 MS.gene81506:CDS
TGTAAAGTTCCATGACTTCG+AGG 0.482194 2.1:+36274269 None:intergenic
ATCATGTTTCTCACCGTTGG+TGG 0.492436 2.1:-36274379 MS.gene81506:CDS
GTATTGTAGGTCTAATTTCA+AGG 0.496292 2.1:-36275177 MS.gene81506:intron
AATCGCACCAACGACGATGA+TGG 0.501968 2.1:-36275419 MS.gene81506:CDS
GAAGAATACAAAGGTCTTGA+GGG 0.514865 2.1:-36275008 MS.gene81506:CDS
TGTTTCTCACCGTTGGTGGA+AGG 0.518754 2.1:-36274375 MS.gene81506:CDS
AACATCATGTTTCTCACCGT+TGG 0.521035 2.1:-36274382 MS.gene81506:CDS
GTTTCTCACCGTTGGTGGAA+GGG 0.521156 2.1:-36274374 MS.gene81506:CDS
TTTCTCCATCCTCGAAGTCA+TGG 0.521750 2.1:-36274278 MS.gene81506:CDS
GTATCAACTATGGTTGATGT+AGG 0.524001 2.1:-36274984 MS.gene81506:CDS
CACGCCATTTACTTGTCACA+AGG 0.531458 2.1:-36275312 MS.gene81506:CDS
ACATGCTTCCTCCAATATGT+TGG 0.534854 2.1:+36274736 None:intergenic
TGAAGAATACAAAGGTCTTG+AGG 0.547774 2.1:-36275009 MS.gene81506:CDS
AGTTCTTTCCCTTCCACCAA+CGG 0.549066 2.1:+36274366 None:intergenic
ATTGCAGCATTAAGAACTGC+AGG 0.551711 2.1:+36275599 None:intergenic
TTTGTTGATGATGAAAATGA+TGG 0.552091 2.1:-36275353 MS.gene81506:CDS
ATCGAGTCTATTTGGTAAGT+CGG 0.554297 2.1:+36275487 None:intergenic
AAGTTCCATGACTTCGAGGA+TGG 0.560276 2.1:+36274273 None:intergenic
TTAGGGATCCAACATATTGG+AGG 0.566339 2.1:-36274744 MS.gene81506:intron
CTACTGTTCACCTGTTTGTG+AGG 0.572877 2.1:+36275665 None:intergenic
GAAAATGAACAATAATGTTG+TGG 0.578225 2.1:-36275697 None:intergenic
AAAATGAACAATAATGTTGT+GGG 0.579380 2.1:-36275696 None:intergenic
TAGTGATACACTCTCTGCTA+TGG 0.581019 2.1:-36275645 MS.gene81506:CDS
TACTACTTTGAGAGTTTATG+GGG 0.583128 2.1:-36275396 MS.gene81506:CDS
GTTGATGTAGGAGGTGGCAG+TGG 0.588462 2.1:-36274972 MS.gene81506:CDS
GAAAATGCACCACCTACTCC+AGG 0.597174 2.1:-36274876 MS.gene81506:intron
GTTGATGATGAAAATGATGG+TGG 0.599361 2.1:-36275350 MS.gene81506:CDS
ATGAATCGAGATGCGTCTGT+TGG 0.600546 2.1:+36274418 None:intergenic
AGTAGTATGGCATCTCCTTG+TGG 0.601193 2.1:+36274702 None:intergenic
TCAACTATGGTTGATGTAGG+AGG 0.605473 2.1:-36274981 MS.gene81506:CDS
ACTATGGTTGATGTAGGAGG+TGG 0.606248 2.1:-36274978 MS.gene81506:CDS
AGTAGTACCATCATCGTCGT+TGG 0.608196 2.1:+36275412 None:intergenic
AATAGGTTACCTGGAGTAGG+TGG 0.622764 2.1:+36274867 None:intergenic
AGCTTTACCACCAAATGGAA+AGG 0.624460 2.1:-36274479 MS.gene81506:CDS
ACAAGGCTTTGTTTGGAATG+TGG 0.625990 2.1:-36275295 MS.gene81506:intron
AGAAATAGGTTACCTGGAGT+AGG 0.627597 2.1:+36274864 None:intergenic
GAGTGTATGCCATAACTGGT+CGG 0.668148 2.1:-36274539 MS.gene81506:CDS
AGAATCGTTGAAGAATACAA+AGG 0.668990 2.1:-36275017 MS.gene81506:CDS
ATGTTTGAAAGTGTTCCACA+AGG 0.704402 2.1:-36274717 MS.gene81506:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAATTTGTATTGT+AGG - chr2.1:36274757-36274776 MS.gene81506:intron 10.0%
!! AAAATTACCAAATTTCATTT+AGG - chr2.1:36275185-36275204 MS.gene81506:intron 15.0%
!! AAATTACCAAATTTCATTTA+GGG - chr2.1:36275186-36275205 MS.gene81506:intron 15.0%
!! TTGAAAGAATATGAAAGTTT+GGG - chr2.1:36275604-36275623 MS.gene81506:CDS 20.0%
!! TTTGAAAGAATATGAAAGTT+TGG - chr2.1:36275603-36275622 MS.gene81506:CDS 20.0%
!!! TATATATCAACATTTTTGCA+TGG + chr2.1:36274735-36274754 None:intergenic 20.0%
! AATGTAATCACAAGAGAAAT+AGG + chr2.1:36275100-36275119 None:intergenic 25.0%
! ATATCTATGTATGAGTACTT+TGG - chr2.1:36274840-36274859 MS.gene81506:intron 25.0%
! TTCCATTAACTTTCTTGAAT+AGG + chr2.1:36274821-36274840 None:intergenic 25.0%
!! AAATTGATTCCCTTTATTGA+TGG + chr2.1:36275032-36275051 None:intergenic 25.0%
!! AATTGATTCCCTTTATTGAT+GGG + chr2.1:36275031-36275050 None:intergenic 25.0%
!!! TTTGTTGATGATGAAAATGA+TGG - chr2.1:36274594-36274613 MS.gene81506:intron 25.0%
AGAATCGTTGAAGAATACAA+AGG - chr2.1:36274930-36274949 MS.gene81506:CDS 30.0%
ATCTCGATTCATTTATGGTA+TGG - chr2.1:36275540-36275559 MS.gene81506:CDS 30.0%
GACCTATTCAAGAAAGTTAA+TGG - chr2.1:36274816-36274835 MS.gene81506:intron 30.0%
GTATTGTAGGTCTAATTTCA+AGG - chr2.1:36274770-36274789 MS.gene81506:intron 30.0%
TTGGATCCCTAAATGAAATT+TGG + chr2.1:36275195-36275214 None:intergenic 30.0%
! ATGATAATGACCTTTCCATT+TGG + chr2.1:36275481-36275500 None:intergenic 30.0%
! GTACTACTTTGAGAGTTTAT+GGG - chr2.1:36274550-36274569 MS.gene81506:intron 30.0%
! TACTACTTTGAGAGTTTATG+GGG - chr2.1:36274551-36274570 MS.gene81506:intron 30.0%
!! GAAAATGATGGTGGTTATTT+GGG - chr2.1:36274606-36274625 MS.gene81506:intron 30.0%
!! TGAAAATGATGGTGGTTATT+TGG - chr2.1:36274605-36274624 MS.gene81506:intron 30.0%
ATAATGACCTTTCCATTTGG+TGG + chr2.1:36275478-36275497 None:intergenic 35.0%
ATCGAGTCTATTTGGTAAGT+CGG + chr2.1:36274463-36274482 None:intergenic 35.0%
CAAGGAAGTAATAGTGAATG+AGG - chr2.1:36274788-36274807 MS.gene81506:intron 35.0%
CATTTAGGGATCCAACATAT+TGG - chr2.1:36275200-36275219 MS.gene81506:intron 35.0%
GAAGAATACAAAGGTCTTGA+GGG - chr2.1:36274939-36274958 MS.gene81506:CDS 35.0%
GCCAAATACCCATCAATAAA+GGG - chr2.1:36275020-36275039 MS.gene81506:CDS 35.0%
TGAAGAATACAAAGGTCTTG+AGG - chr2.1:36274938-36274957 MS.gene81506:CDS 35.0%
TGACATAAATCCATCATTGC+TGG + chr2.1:36274403-36274422 None:intergenic 35.0%
TGCCAAATACCCATCAATAA+AGG - chr2.1:36275019-36275038 MS.gene81506:CDS 35.0%
! AAAGCCTTGTGACAAGTAAA+TGG + chr2.1:36274642-36274661 None:intergenic 35.0%
! GGTACTACTTTGAGAGTTTA+TGG - chr2.1:36274549-36274568 MS.gene81506:intron 35.0%
! GTATCAACTATGGTTGATGT+AGG - chr2.1:36274963-36274982 MS.gene81506:CDS 35.0%
! TATGGTGTTAGGTTCTGTTA+TGG - chr2.1:36274320-36274339 MS.gene81506:CDS 35.0%
! TCCCTTTATTGATGGGTATT+TGG + chr2.1:36275024-36275043 None:intergenic 35.0%
! TTTAGAGTGTATGCCATAAC+TGG - chr2.1:36275404-36275423 MS.gene81506:CDS 35.0%
!! ATGTTTGAAAGTGTTCCACA+AGG - chr2.1:36275230-36275249 MS.gene81506:intron 35.0%
!! GTTGATGATGAAAATGATGG+TGG - chr2.1:36274597-36274616 MS.gene81506:intron 35.0%
AACATCATGTTTCTCACCGT+TGG - chr2.1:36275565-36275584 MS.gene81506:CDS 40.0%
AAGACACGATCGAGTCTATT+TGG + chr2.1:36274471-36274490 None:intergenic 40.0%
ACATGCTTCCTCCAATATGT+TGG + chr2.1:36275214-36275233 None:intergenic 40.0%
AGAAATAGGTTACCTGGAGT+AGG + chr2.1:36275086-36275105 None:intergenic 40.0%
AGCTTTACCACCAAATGGAA+AGG - chr2.1:36275468-36275487 MS.gene81506:CDS 40.0%
AGGAGATGCCATACTACTTA+AGG - chr2.1:36275250-36275269 MS.gene81506:intron 40.0%
ATCATTGCTACCAGCAATGA+TGG - chr2.1:36274390-36274409 MS.gene81506:CDS 40.0%
ATTGCAGCATTAAGAACTGC+AGG + chr2.1:36274351-36274370 None:intergenic 40.0%
ATTGTTCATCCGACCAGTTA+TGG + chr2.1:36275420-36275439 None:intergenic 40.0%
CACAAAGCTTTACCACCAAA+TGG - chr2.1:36275463-36275482 MS.gene81506:CDS 40.0%
CACAAGAGAAATAGGTTACC+TGG + chr2.1:36275092-36275111 None:intergenic 40.0%
CACACTGACCTTAAGTAGTA+TGG + chr2.1:36275261-36275280 None:intergenic 40.0%
GAAAGTTTGGGTAAACGATC+TGG - chr2.1:36275616-36275635 MS.gene81506:CDS 40.0%
GACGCATCTCGATTCATTTA+TGG - chr2.1:36275535-36275554 MS.gene81506:CDS 40.0%
TAGTGATACACTCTCTGCTA+TGG - chr2.1:36274302-36274321 MS.gene81506:CDS 40.0%
TGTAAAGTTCCATGACTTCG+AGG + chr2.1:36275681-36275700 None:intergenic 40.0%
TTAGGGATCCAACATATTGG+AGG - chr2.1:36275203-36275222 MS.gene81506:intron 40.0%
! GGTGCATTTTCAATGACTTG+AGG + chr2.1:36275062-36275081 None:intergenic 40.0%
! TCAACTATGGTTGATGTAGG+AGG - chr2.1:36274966-36274985 MS.gene81506:CDS 40.0%
!! ACAAGGCTTTGTTTGGAATG+TGG - chr2.1:36274652-36274671 MS.gene81506:intron 40.0%
!! ACTTGTCACAAGGCTTTGTT+TGG - chr2.1:36274645-36274664 MS.gene81506:intron 40.0%
!! TCTTGAGGGAGTATCAACTA+TGG - chr2.1:36274953-36274972 MS.gene81506:CDS 40.0%
AAGTTCCATGACTTCGAGGA+TGG + chr2.1:36275677-36275696 None:intergenic 45.0%
AATAGGTTACCTGGAGTAGG+TGG + chr2.1:36275083-36275102 None:intergenic 45.0%
ACACTCTCTGCTATGGTGTT+AGG - chr2.1:36274309-36274328 MS.gene81506:CDS 45.0%
AGTAGTACCATCATCGTCGT+TGG + chr2.1:36274538-36274557 None:intergenic 45.0%
AGTAGTATGGCATCTCCTTG+TGG + chr2.1:36275248-36275267 None:intergenic 45.0%
AGTTCTTTCCCTTCCACCAA+CGG + chr2.1:36275584-36275603 None:intergenic 45.0%
ATCATGTTTCTCACCGTTGG+TGG - chr2.1:36275568-36275587 MS.gene81506:CDS 45.0%
ATGAATCGAGATGCGTCTGT+TGG + chr2.1:36275532-36275551 None:intergenic 45.0%
CACGCCATTTACTTGTCACA+AGG - chr2.1:36274635-36274654 MS.gene81506:intron 45.0%
CTACTGTTCACCTGTTTGTG+AGG + chr2.1:36274285-36274304 None:intergenic 45.0%
GAGTGTATGCCATAACTGGT+CGG - chr2.1:36275408-36275427 MS.gene81506:CDS 45.0%
GTTTATGGGGTCACTTCTTC+TGG - chr2.1:36274564-36274583 MS.gene81506:intron 45.0%
TTTCTCCATCCTCGAAGTCA+TGG - chr2.1:36275669-36275688 MS.gene81506:CDS 45.0%
! ACTATGGTTGATGTAGGAGG+TGG - chr2.1:36274969-36274988 MS.gene81506:CDS 45.0%
!! GGTAAGTCGGAGTGTTGATT+TGG + chr2.1:36274450-36274469 None:intergenic 45.0%
!! TCTGTTGGTTCTGGAACATC+TGG + chr2.1:36275517-36275536 None:intergenic 45.0%
AATCGCACCAACGACGATGA+TGG - chr2.1:36274528-36274547 MS.gene81506:CDS 50.0%
ATCATCGTCGTTGGTGCGAT+TGG + chr2.1:36274529-36274548 None:intergenic 50.0%
GAAAATGCACCACCTACTCC+AGG - chr2.1:36275071-36275090 MS.gene81506:CDS 50.0%
GGAACTCACACCTCACAAAC+AGG - chr2.1:36274272-36274291 MS.gene81506:CDS 50.0%
! GTTTCTCACCGTTGGTGGAA+GGG - chr2.1:36275573-36275592 MS.gene81506:CDS 50.0%
! TGTTTCTCACCGTTGGTGGA+AGG - chr2.1:36275572-36275591 MS.gene81506:CDS 50.0%
GTTGATGTAGGAGGTGGCAG+TGG - chr2.1:36274975-36274994 MS.gene81506:CDS 55.0%
!! CGAGATGCGTCTGTTGGTTC+TGG + chr2.1:36275526-36275545 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 36274264 36275705 36274264 ID=MS.gene81506
chr2.1 mRNA 36274264 36275705 36274264 ID=MS.gene81506.t1;Parent=MS.gene81506
chr2.1 exon 36275296 36275705 36275296 ID=MS.gene81506.t1.exon1;Parent=MS.gene81506.t1
chr2.1 CDS 36275296 36275705 36275296 ID=cds.MS.gene81506.t1;Parent=MS.gene81506.t1
chr2.1 exon 36274877 36275190 36274877 ID=MS.gene81506.t1.exon2;Parent=MS.gene81506.t1
chr2.1 CDS 36274877 36275190 36274877 ID=cds.MS.gene81506.t1;Parent=MS.gene81506.t1
chr2.1 exon 36274698 36274762 36274698 ID=MS.gene81506.t1.exon3;Parent=MS.gene81506.t1
chr2.1 CDS 36274698 36274762 36274698 ID=cds.MS.gene81506.t1;Parent=MS.gene81506.t1
chr2.1 exon 36274264 36274560 36274264 ID=MS.gene81506.t1.exon4;Parent=MS.gene81506.t1
chr2.1 CDS 36274264 36274560 36274264 ID=cds.MS.gene81506.t1;Parent=MS.gene81506.t1
Gene Sequence

>MS.gene81506

ATGTTGTGGGAACTCACACCTCACAAACAGGTGAACAGTAGTGATACACTCTCTGCTATGGTGTTAGGTTCTGTTATGGTTCTTCCTGCAGTTCTTAATGCTGCAATTGAGCTCAAATTATTTGATATCATTGCTACCAGCAATGATGGATTTATGTCAGTCTTTGAAATTGCTTCAAAGTTACCAAATCAACACTCCGACTTACCAAATAGACTCGATCGTGTCTTGTGCGTGCTTGCTAGCTACTCTCTTCTTTCTGTTTCCAATCGCACCAACGACGATGATGGTACTACTTTGAGAGTTTATGGGGTCACTTCTTCTGGCAAATACTTTGTTGATGATGAAAATGATGGTGGTTATTTGGGATCATTCACGCCATTTACTTGTCACAAGGCTTTGTTTGGAATGTGGTAAGTATTTCTAATTGATTAATTTGCATGAAATCTTGATCTATATGTTGTTAATAGTCCATGCAAAAATGTTGATATATAAAAAAAATTAAATTTGTATTGTAGGTCTAATTTCAAGGAAGTAATAGTGAATGAGGAGATTGACCTATTCAAGAAAGTTAATGGAATATCTATGTATGAGTACTTTGGAAAAGATTCACAAATAAACAAAATATTTAACAAATCAATGACTGATACATGCAATGTTGAGATTAGAAGAATCGTTGAAGAATACAAAGGTCTTGAGGGAGTATCAACTATGGTTGATGTAGGAGGTGGCAGTGGACAAAGTCTCAAAACAATTATTGCCAAATACCCATCAATAAAGGGAATCAATTTTGATCTTCCTCAAGTCATTGAAAATGCACCACCTACTCCAGGTAACCTATTTCTCTTGTGATTACATTCTATATTTTGAACTTTCTTTAGAGTTTAGATAAATAAAACTATAAGTTTTCAAGAGTATTAATTCAAAATTACCAAATTTCATTTAGGGATCCAACATATTGGAGGAAGCATGTTTGAAAGTGTTCCACAAGGAGATGCCATACTACTTAAGGTCAGTGTGTTGATGAAATAATTTAATTTATGAAACATTTATTTGCTTCAATTACAAGAATAACTTCATTTATTATCTACAAGAAAAATATAGTGCTTACAAAATTATTTTGTATTGAATCTCTCTCATTGTTTTAGAGTGTATGCCATAACTGGTCGGATGAACAATGCATACAAATTTTAAGCAATTGTCACAAAGCTTTACCACCAAATGGAAAGGTCATTATCATAGAGCTCGCAAAACCAGATGTTCCAGAACCAACAGACGCATCTCGATTCATTTATGGTATGGACAACATCATGTTTCTCACCGTTGGTGGAAGGGAAAGAACTTTGAAAGAATATGAAAGTTTGGGTAAACGATCTGGATTTGTTAAGTTTCAAGCTGCTTGTCGTGTTTTCTCCATCCTCGAAGTCATGGAACTTTACAAATAG

Protein sequence

>MS.gene81506.t1

MLWELTPHKQVNSSDTLSAMVLGSVMVLPAVLNAAIELKLFDIIATSNDGFMSVFEIASKLPNQHSDLPNRLDRVLCVLASYSLLSVSNRTNDDDGTTLRVYGVTSSGKYFVDDENDGGYLGSFTPFTCHKALFGMWSNFKEVIVNEEIDLFKKVNGISMYEYFGKDSQINKIFNKSMTDTCNVEIRRIVEEYKGLEGVSTMVDVGGGSGQSLKTIIAKYPSIKGINFDLPQVIENAPPTPGIQHIGGSMFESVPQGDAILLKSVCHNWSDEQCIQILSNCHKALPPNGKVIIIELAKPDVPEPTDASRFIYGMDNIMFLTVGGRERTLKEYESLGKRSGFVKFQAACRVFSILEVMELYK