AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81504


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81504.t1 MTR_2g055940 95.055 364 17 1 1 364 1 363 0.0 711
MS.gene81504.t1 MTR_7g011900 75.207 363 87 3 3 364 10 370 0.0 565
MS.gene81504.t1 MTR_7g011990 68.595 363 108 4 3 364 10 367 0.0 516
MS.gene81504.t1 MTR_7g012020 68.871 363 110 3 3 364 9 369 0.0 515
MS.gene81504.t1 MTR_7g012040 68.871 363 109 4 3 364 9 368 0.0 508
MS.gene81504.t1 MTR_7g012090 63.315 368 127 4 3 364 10 375 3.67e-167 471
MS.gene81504.t1 MTR_7g012070 63.043 368 128 4 3 364 10 375 5.21e-167 471
MS.gene81504.t1 MTR_1g096310 61.475 366 134 5 3 364 10 372 1.04e-163 462
MS.gene81504.t1 MTR_7g012020 71.698 265 72 3 3 266 9 271 3.21e-132 380
MS.gene81504.t1 MTR_1g036460 50.272 368 172 7 3 364 8 370 5.29e-128 372
MS.gene81504.t1 MTR_1g036490 50.543 368 171 8 3 364 8 370 1.26e-127 371
MS.gene81504.t1 MTR_7g012020 71.951 246 66 3 3 247 9 252 8.08e-121 349
MS.gene81504.t1 MTR_1g036510 51.282 351 162 6 20 364 37 384 3.42e-120 352
MS.gene81504.t1 MTR_3g021440 50.852 352 168 5 15 364 22 370 8.60e-118 346
MS.gene81504.t1 MTR_3g021430 49.860 357 174 5 10 364 4 357 1.54e-117 345
MS.gene81504.t1 MTR_3g092900 43.407 364 197 7 3 364 7 363 6.23e-104 310
MS.gene81504.t1 MTR_5g098170 41.504 359 201 8 10 364 10 363 2.31e-90 276
MS.gene81504.t1 MTR_0591s0010 40.462 346 200 6 22 364 35 377 1.46e-86 266
MS.gene81504.t1 MTR_1g050220 44.444 333 129 7 20 347 6 287 5.79e-86 262
MS.gene81504.t1 MTR_7g118320 39.595 346 203 6 22 364 20 362 1.68e-82 255
MS.gene81504.t1 MTR_6g060290 72.881 177 31 3 3 178 10 170 6.25e-82 247
MS.gene81504.t1 MTR_7g118300 40.407 344 194 8 25 364 39 375 6.18e-81 252
MS.gene81504.t1 MTR_8g068690 39.067 343 203 6 25 364 37 376 1.98e-80 251
MS.gene81504.t1 MTR_1g036510 51.984 252 113 5 20 266 37 285 8.03e-80 246
MS.gene81504.t1 MTR_8g068750 37.572 346 210 6 22 364 35 377 3.13e-78 245
MS.gene81504.t1 MTR_8g068870 36.494 348 215 6 20 364 19 363 1.16e-74 235
MS.gene81504.t1 MTR_8g068570 38.658 313 160 7 22 331 35 318 2.73e-68 218
MS.gene81504.t1 MTR_8g024160 40.068 292 165 6 77 364 43 328 4.49e-68 217
MS.gene81504.t1 MTR_1g036510 49.784 231 108 5 20 245 37 264 1.35e-67 214
MS.gene81504.t1 MTR_6g078850 36.338 355 217 7 15 362 32 384 1.15e-66 219
MS.gene81504.t1 MTR_8g068730 35.549 346 185 7 22 364 35 345 3.53e-62 202
MS.gene81504.t1 MTR_2g072790 33.046 348 214 8 10 349 4 340 3.21e-57 190
MS.gene81504.t1 MTR_3g096050 34.409 372 222 11 1 364 1 358 5.33e-56 187
MS.gene81504.t1 MTR_8g068690 37.603 242 147 4 29 268 41 280 1.91e-52 176
MS.gene81504.t1 MTR_3g096070 33.239 355 197 11 1 349 1 321 9.67e-52 175
MS.gene81504.t1 MTR_0017s0100 34.421 337 200 13 35 363 44 367 1.31e-49 171
MS.gene81504.t1 MTR_0079s0070 34.783 322 188 10 35 347 10 318 4.40e-49 168
MS.gene81504.t1 MTR_4g038440 34.783 322 188 10 35 347 44 352 9.62e-49 168
MS.gene81504.t1 MTR_8g068600 36.245 229 142 4 40 266 27 253 1.79e-44 155
MS.gene81504.t1 MTR_3g083620 31.962 316 200 7 33 344 38 342 1.10e-43 155
MS.gene81504.t1 MTR_8g068740 35.249 261 133 5 22 280 35 261 1.33e-43 152
MS.gene81504.t1 MTR_5g074600 31.387 274 173 7 99 363 91 358 3.12e-43 154
MS.gene81504.t1 MTR_5g074680 29.532 342 212 10 35 363 34 359 7.09e-43 152
MS.gene81504.t1 MTR_4g088340 28.994 338 222 8 32 363 7 332 3.18e-39 142
MS.gene81504.t1 MTR_4g088345 28.402 338 224 7 32 363 30 355 4.55e-39 142
MS.gene81504.t1 MTR_5g074540 34.101 217 132 4 140 348 113 326 7.83e-38 139
MS.gene81504.t1 MTR_3g096050 35.433 254 154 6 16 266 13 259 8.26e-38 137
MS.gene81504.t1 MTR_5g074580 27.566 341 220 11 35 363 34 359 9.72e-38 139
MS.gene81504.t1 MTR_1g076940 28.438 320 217 6 35 348 33 346 6.66e-37 137
MS.gene81504.t1 MTR_4g033015 29.341 334 224 7 34 359 32 361 1.10e-35 134
MS.gene81504.t1 MTR_4g033200 29.042 334 225 7 34 359 32 361 7.77e-35 131
MS.gene81504.t1 MTR_4g088200 28.972 321 216 7 34 348 32 346 9.10e-35 131
MS.gene81504.t1 MTR_7g014570 31.915 235 149 5 135 363 122 351 2.26e-34 130
MS.gene81504.t1 MTR_4g079160 34.694 196 120 4 159 348 147 340 3.06e-34 129
MS.gene81504.t1 MTR_4g033150 28.743 334 226 7 34 359 32 361 3.24e-34 129
MS.gene81504.t1 MTR_7g024520 33.824 204 129 4 163 362 147 348 6.20e-34 129
MS.gene81504.t1 MTR_8g068620 47.706 109 57 0 158 266 2 110 1.35e-33 121
MS.gene81504.t1 MTR_7g014510 26.471 306 209 6 63 363 62 356 1.66e-33 127
MS.gene81504.t1 MTR_7g024500 26.625 323 215 9 32 348 29 335 2.10e-33 127
MS.gene81504.t1 MTR_4g088190 29.503 322 216 7 34 348 32 349 3.53e-30 119
MS.gene81504.t1 MTR_5g074610 29.098 244 139 5 126 363 110 325 5.44e-30 117
MS.gene81504.t1 MTR_4g038440 34.310 239 138 7 35 266 44 270 1.47e-29 115
MS.gene81504.t1 MTR_4g033170 29.924 264 160 8 34 288 32 279 5.60e-26 107
MS.gene81504.t1 MTR_4g033085 29.658 263 160 8 34 287 32 278 1.94e-24 102
MS.gene81504.t1 MTR_1g076930 24.790 238 169 5 32 266 7 237 2.74e-20 89.4
MS.gene81504.t1 MTR_6g060280 69.355 62 13 2 219 275 2 62 3.12e-20 84.3
MS.gene81504.t1 MTR_8g068760 38.000 100 60 2 266 364 135 233 4.63e-16 77.0
MS.gene81504.t1 MTR_8g068760 33.600 125 80 3 20 142 20 143 6.67e-11 62.0
MS.gene81504.t1 MTR_0794s0020 25.792 221 157 5 34 251 32 248 3.65e-15 74.7
MS.gene81504.t1 MTR_8g068580 42.391 92 51 2 274 364 43 133 1.29e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81504.t1 AT5G54160 44.633 354 190 6 12 364 13 361 1.56e-102 307
MS.gene81504.t1 AT1G77520 38.136 354 209 7 19 364 30 381 7.45e-83 257
MS.gene81504.t1 AT1G51990 39.286 336 198 5 13 344 10 343 8.52e-83 256
MS.gene81504.t1 AT1G51990 38.988 336 199 5 13 344 10 343 1.58e-82 256
MS.gene81504.t1 AT1G77530 40.678 354 200 7 19 364 30 381 7.80e-79 247
MS.gene81504.t1 AT1G33030 39.535 344 195 8 22 358 10 347 6.19e-78 243
MS.gene81504.t1 AT1G63140 38.136 354 209 8 19 364 30 381 1.86e-76 241
MS.gene81504.t1 AT1G63140 38.136 354 209 8 19 364 50 401 2.91e-76 241
MS.gene81504.t1 AT1G21100 39.255 349 197 9 15 354 22 364 6.48e-70 223
MS.gene81504.t1 AT5G53810 37.719 342 202 8 32 364 39 378 2.35e-69 222
MS.gene81504.t1 AT1G21130 38.968 349 198 9 15 354 22 364 1.57e-68 220
MS.gene81504.t1 AT1G21110 38.682 349 199 9 15 354 22 364 6.28e-67 216
MS.gene81504.t1 AT1G21120 38.395 349 200 9 15 354 22 364 6.03e-66 213
MS.gene81504.t1 AT1G76790 37.701 374 209 11 6 364 1 365 1.49e-65 212
MS.gene81504.t1 AT1G21120 38.395 349 200 9 15 354 70 412 2.91e-65 213
MS.gene81504.t1 AT3G53140 34.795 342 199 8 20 348 14 344 3.71e-59 195
MS.gene81504.t1 AT1G62900 42.233 206 116 3 161 364 1 205 2.14e-57 186
MS.gene81504.t1 AT5G37170 33.133 332 181 9 41 364 36 334 1.48e-51 175
MS.gene81504.t1 AT5G37170 41.414 198 112 4 170 364 38 234 2.03e-51 171
MS.gene81504.t1 AT1G33030 39.600 250 145 5 22 269 10 255 5.23e-51 171
MS.gene81504.t1 AT1G33030 39.676 247 143 5 22 266 10 252 2.99e-50 169
MS.gene81504.t1 AT5G37170 41.176 187 106 4 181 364 1 186 3.69e-48 161
MS.gene81504.t1 AT1G63140 36.614 254 154 5 19 266 50 302 2.48e-44 155
MS.gene81504.t1 AT1G77530 38.298 235 138 4 19 247 30 263 1.43e-39 141
MS.gene81504.t1 AT1G21130 37.838 259 148 7 15 266 22 274 4.21e-39 141
MS.gene81504.t1 AT4G35150 31.687 243 148 7 123 348 68 309 3.94e-38 139
MS.gene81504.t1 AT4G35160 33.840 263 150 8 105 348 109 366 2.14e-36 136
MS.gene81504.t1 AT1G63140 35.319 235 145 5 19 247 50 283 6.64e-34 127

Find 78 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAGTACTTTGAGAGTTTA+TGG 0.138774 2.1:-36294581 MS.gene81504:CDS
TCCCTTTATTGATGGGTATT+TGG 0.140968 2.1:+36294123 None:intergenic
GACGCATCTCGATTCATTTA+TGG 0.185909 2.1:-36293625 MS.gene81504:CDS
TGAAAATGATGGTGGTTATT+TGG 0.190360 2.1:-36294525 MS.gene81504:CDS
GACCTATTCAAGAAAGTTAA+TGG 0.210657 2.1:-36294328 MS.gene81504:CDS
TTTGAAAGAATATGAAAGTT+TGG 0.223106 2.1:-36293557 MS.gene81504:CDS
AACACACGATCGAGTCTATT+TGG 0.269441 2.1:+36294662 None:intergenic
TGCCAAATACCCATCAATAA+AGG 0.282531 2.1:-36294125 MS.gene81504:CDS
CGAGATGCGTCTGTTGGTTC+TGG 0.300236 2.1:+36293637 None:intergenic
GTTTATGGGGTCACTTCTTC+TGG 0.301463 2.1:-36294566 MS.gene81504:CDS
AAAGCCTTGTGACACGTAAA+TGG 0.333581 2.1:+36294491 None:intergenic
TTCCATTAACTTTCTTGAAT+AGG 0.343440 2.1:+36294326 None:intergenic
TTGAAAGAATATGAAAGTTT+GGG 0.349066 2.1:-36293556 MS.gene81504:CDS
GAAAATGATGGTGGTTATTT+GGG 0.349287 2.1:-36294524 MS.gene81504:CDS
CACACTGACCTTAAGTAGTA+TGG 0.352819 2.1:+36293900 None:intergenic
TTTAGAGTGTATGCCATAAC+TGG 0.370585 2.1:-36293756 MS.gene81504:intron
AAATTTATTCCCTTTATTGA+TGG 0.372401 2.1:+36294115 None:intergenic
CATTTAGGGATCCAACATAT+TGG 0.374317 2.1:-36293958 MS.gene81504:intron
ACACTCTCTGCTATGGTGTT+AGG 0.375320 2.1:-36294821 MS.gene81504:CDS
GGTAAGTCGGAGTGTTGATT+TGG 0.380815 2.1:+36294683 None:intergenic
GTAGTACTTTGAGAGTTTAT+GGG 0.390682 2.1:-36294580 MS.gene81504:CDS
GCCAAATACCCATCAATAAA+GGG 0.393194 2.1:-36294124 MS.gene81504:CDS
ATCATCGTCGTTGGTGCGAT+TGG 0.398696 2.1:+36294604 None:intergenic
TCTGTTGGTTCTGGAACATC+TGG 0.401209 2.1:+36293646 None:intergenic
TATGGTGTTAGGTTCTGTTA+TGG 0.402609 2.1:-36294810 MS.gene81504:CDS
ACGTGTCACAAGGCTTTGTT+TGG 0.404762 2.1:-36294485 MS.gene81504:CDS
ATGATAATGACCTTTCCATT+TGG 0.411682 2.1:+36293682 None:intergenic
GAAAGTTTGGGTAAACGATC+TGG 0.423215 2.1:-36293544 MS.gene81504:CDS
CACAAAGCTTTACCACCAAA+TGG 0.425024 2.1:-36293697 MS.gene81504:CDS
AGGAGATGCCATACTACTTA+AGG 0.430145 2.1:-36293908 MS.gene81504:intron
AATTTATTCCCTTTATTGAT+GGG 0.442350 2.1:+36294116 None:intergenic
ATCATTGCTAGCAGCAATGA+TGG 0.449753 2.1:-36294740 MS.gene81504:CDS
ATATCTATGTATGAGTACTT+TGG 0.452220 2.1:-36294304 MS.gene81504:CDS
ATTGTTCATCCGACCAGTTA+TGG 0.467416 2.1:+36293743 None:intergenic
GGAACTCACACCTCACAAAC+AGG 0.473367 2.1:-36294857 MS.gene81504:CDS
ATAATGACCTTTCCATTTGG+TGG 0.479304 2.1:+36293685 None:intergenic
CAAGGAAGTAATAGTGAATG+AGG 0.480422 2.1:-36294356 MS.gene81504:CDS
ATCTCGATTCATTTATGGTA+TGG 0.481444 2.1:-36293620 MS.gene81504:CDS
TCTTGAGGGAGTATCAACTA+TGG 0.481625 2.1:-36294191 MS.gene81504:CDS
TGTAAAGTTCCATGACTTCG+AGG 0.482194 2.1:+36293482 None:intergenic
GTATTGTAGGTCTAATTTCA+AGG 0.496292 2.1:-36294374 MS.gene81504:intron
AACATCATGTTTCTCACAGT+TGG 0.505124 2.1:-36293595 MS.gene81504:CDS
ATCATGTTTCTCACAGTTGG+TGG 0.507213 2.1:-36293592 MS.gene81504:CDS
AATCGCACCAACGACGATGA+TGG 0.508623 2.1:-36294602 MS.gene81504:CDS
GAAGAATACAAAGGTCTTGA+GGG 0.514865 2.1:-36294205 MS.gene81504:CDS
TTTCTCCATCCTCGAAGTCA+TGG 0.521750 2.1:-36293491 MS.gene81504:CDS
GTATCAACTATGGTTGATGT+AGG 0.524001 2.1:-36294181 MS.gene81504:CDS
TGTTTCTCACAGTTGGTGGA+AGG 0.527248 2.1:-36293588 MS.gene81504:CDS
ACATGCTTCCTCCAATATGT+TGG 0.534854 2.1:+36293947 None:intergenic
GTTTCTCACAGTTGGTGGAA+GGG 0.541114 2.1:-36293587 MS.gene81504:CDS
TGAAGAATACAAAGGTCTTG+AGG 0.547774 2.1:-36294206 MS.gene81504:CDS
CACACCATTTACGTGTCACA+AGG 0.550198 2.1:-36294495 MS.gene81504:CDS
ATTGCAGCATTAAGAACTGC+AGG 0.551711 2.1:+36294782 None:intergenic
TTTGTTGATGATGAAAATGA+TGG 0.552091 2.1:-36294536 MS.gene81504:CDS
ATCGAGTCTATTTGGTAAGT+CGG 0.554297 2.1:+36294670 None:intergenic
AAGTTCCATGACTTCGAGGA+TGG 0.560276 2.1:+36293486 None:intergenic
TTAGGGATCCAACATATTGG+AGG 0.566339 2.1:-36293955 MS.gene81504:intron
ACTACTGTCACCTGTTTGTG+AGG 0.573457 2.1:+36294847 None:intergenic
GAAAATGAACAATAATGTTG+TGG 0.578225 2.1:-36294879 None:intergenic
AAAATGAACAATAATGTTGT+GGG 0.579380 2.1:-36294878 MS.gene81504:CDS
TAGTGATACACTCTCTGCTA+TGG 0.581019 2.1:-36294828 MS.gene81504:CDS
GTTGATGTAGGAGGTGGCAG+TGG 0.588462 2.1:-36294169 MS.gene81504:CDS
TAGTACTTTGAGAGTTTATG+GGG 0.589839 2.1:-36294579 MS.gene81504:CDS
GAAAATGCACCACCTACTCC+AGG 0.597174 2.1:-36294073 MS.gene81504:intron
TCATTGCTAGCAGCAATGAT+GGG 0.598613 2.1:-36294739 MS.gene81504:CDS
GTTGATGATGAAAATGATGG+TGG 0.599361 2.1:-36294533 MS.gene81504:CDS
ATGAATCGAGATGCGTCTGT+TGG 0.600546 2.1:+36293631 None:intergenic
AGTAGTATGGCATCTCCTTG+TGG 0.601193 2.1:+36293913 None:intergenic
AGGAATAGGTTACCTGGAGT+AGG 0.602035 2.1:+36294061 None:intergenic
TCAACTATGGTTGATGTAGG+AGG 0.605473 2.1:-36294178 MS.gene81504:CDS
ACTATGGTTGATGTAGGAGG+TGG 0.606248 2.1:-36294175 MS.gene81504:CDS
AATAGGTTACCTGGAGTAGG+TGG 0.622764 2.1:+36294064 None:intergenic
AGCTTTACCACCAAATGGAA+AGG 0.624460 2.1:-36293692 MS.gene81504:CDS
ACAAGGCTTTGTTTGGAATG+TGG 0.625990 2.1:-36294478 MS.gene81504:intron
AGTACTACCATCATCGTCGT+TGG 0.626740 2.1:+36294595 None:intergenic
GAGTGTATGCCATAACTGGT+CGG 0.668148 2.1:-36293752 MS.gene81504:CDS
AGAATCGTTGAAGAATACAA+AGG 0.668990 2.1:-36294214 MS.gene81504:CDS
ATGTTTGAAAGTGTTCCACA+AGG 0.704402 2.1:-36293928 MS.gene81504:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAATTTGTATTGT+AGG - chr2.1:36293965-36293984 MS.gene81504:intron 10.0%
!! AAAATTACCAAATTTCATTT+AGG - chr2.1:36294379-36294398 MS.gene81504:intron 15.0%
!! AAATTACCAAATTTCATTTA+GGG - chr2.1:36294380-36294399 MS.gene81504:intron 15.0%
!! TATATATAGAAAGTAATCAT+TGG + chr2.1:36294327-36294346 None:intergenic 15.0%
!! AAATTTATTCCCTTTATTGA+TGG + chr2.1:36294240-36294259 None:intergenic 20.0%
!! AATTTATTCCCTTTATTGAT+GGG + chr2.1:36294239-36294258 None:intergenic 20.0%
!! TAATCATTGGATATAACTTT+AGG + chr2.1:36294314-36294333 None:intergenic 20.0%
!! TTGAAAGAATATGAAAGTTT+GGG - chr2.1:36294796-36294815 MS.gene81504:CDS 20.0%
!! TTTGAAAGAATATGAAAGTT+TGG - chr2.1:36294795-36294814 MS.gene81504:CDS 20.0%
! ATATCTATGTATGAGTACTT+TGG - chr2.1:36294048-36294067 MS.gene81504:intron 25.0%
! TTCCATTAACTTTCTTGAAT+AGG + chr2.1:36294029-36294048 None:intergenic 25.0%
!! TTGGATATAACTTTAGGAAT+AGG + chr2.1:36294308-36294327 None:intergenic 25.0%
!!! TTTGTTGATGATGAAAATGA+TGG - chr2.1:36293816-36293835 MS.gene81504:intron 25.0%
AGAATCGTTGAAGAATACAA+AGG - chr2.1:36294138-36294157 MS.gene81504:CDS 30.0%
ATCTCGATTCATTTATGGTA+TGG - chr2.1:36294732-36294751 MS.gene81504:CDS 30.0%
GACCTATTCAAGAAAGTTAA+TGG - chr2.1:36294024-36294043 MS.gene81504:intron 30.0%
GTATTGTAGGTCTAATTTCA+AGG - chr2.1:36293978-36293997 MS.gene81504:intron 30.0%
TTGGATCCCTAAATGAAATT+TGG + chr2.1:36294389-36294408 None:intergenic 30.0%
! ATGATAATGACCTTTCCATT+TGG + chr2.1:36294673-36294692 None:intergenic 30.0%
! GTAGTACTTTGAGAGTTTAT+GGG - chr2.1:36293772-36293791 MS.gene81504:intron 30.0%
! TAGTACTTTGAGAGTTTATG+GGG - chr2.1:36293773-36293792 MS.gene81504:intron 30.0%
!! GAAAATGATGGTGGTTATTT+GGG - chr2.1:36293828-36293847 MS.gene81504:intron 30.0%
!! TGAAAATGATGGTGGTTATT+TGG - chr2.1:36293827-36293846 MS.gene81504:intron 30.0%
AACATCATGTTTCTCACAGT+TGG - chr2.1:36294757-36294776 MS.gene81504:CDS 35.0%
ATAATGACCTTTCCATTTGG+TGG + chr2.1:36294670-36294689 None:intergenic 35.0%
ATCGAGTCTATTTGGTAAGT+CGG + chr2.1:36293685-36293704 None:intergenic 35.0%
CAAGGAAGTAATAGTGAATG+AGG - chr2.1:36293996-36294015 MS.gene81504:intron 35.0%
CATTCCAAACACTTTGCATA+TGG + chr2.1:36293932-36293951 None:intergenic 35.0%
CATTTAGGGATCCAACATAT+TGG - chr2.1:36294394-36294413 MS.gene81504:intron 35.0%
GAAGAATACAAAGGTCTTGA+GGG - chr2.1:36294147-36294166 MS.gene81504:CDS 35.0%
GCCAAATACCCATCAATAAA+GGG - chr2.1:36294228-36294247 MS.gene81504:CDS 35.0%
TGAAGAATACAAAGGTCTTG+AGG - chr2.1:36294146-36294165 MS.gene81504:CDS 35.0%
TGCCAAATACCCATCAATAA+AGG - chr2.1:36294227-36294246 MS.gene81504:CDS 35.0%
! AACTTTAGGAATAGGTTACC+TGG + chr2.1:36294300-36294319 None:intergenic 35.0%
! GGTAGTACTTTGAGAGTTTA+TGG - chr2.1:36293771-36293790 MS.gene81504:intron 35.0%
! GTATCAACTATGGTTGATGT+AGG - chr2.1:36294171-36294190 MS.gene81504:CDS 35.0%
! TAGTCCATATGCAAAGTGTT+TGG - chr2.1:36293925-36293944 MS.gene81504:CDS 35.0%
! TATGGTGTTAGGTTCTGTTA+TGG - chr2.1:36293542-36293561 MS.gene81504:CDS 35.0%
! TCCCTTTATTGATGGGTATT+TGG + chr2.1:36294232-36294251 None:intergenic 35.0%
! TTTAGAGTGTATGCCATAAC+TGG - chr2.1:36294596-36294615 MS.gene81504:CDS 35.0%
!! ACACTCTAAAACAATGAGAG+AGG + chr2.1:36294586-36294605 None:intergenic 35.0%
!! ATGTTTGAAAGTGTTCCACA+AGG - chr2.1:36294424-36294443 MS.gene81504:intron 35.0%
!! GTTGATGATGAAAATGATGG+TGG - chr2.1:36293819-36293838 MS.gene81504:intron 35.0%
AACACACGATCGAGTCTATT+TGG + chr2.1:36293693-36293712 None:intergenic 40.0%
ACATGCTTCCTCCAATATGT+TGG + chr2.1:36294408-36294427 None:intergenic 40.0%
AGCTTTACCACCAAATGGAA+AGG - chr2.1:36294660-36294679 MS.gene81504:CDS 40.0%
AGGAGATGCCATACTACTTA+AGG - chr2.1:36294444-36294463 MS.gene81504:intron 40.0%
ATCATGTTTCTCACAGTTGG+TGG - chr2.1:36294760-36294779 MS.gene81504:CDS 40.0%
ATCATTGCTAGCAGCAATGA+TGG - chr2.1:36293612-36293631 MS.gene81504:CDS 40.0%
ATTGCAGCATTAAGAACTGC+AGG + chr2.1:36293573-36293592 None:intergenic 40.0%
ATTGTTCATCCGACCAGTTA+TGG + chr2.1:36294612-36294631 None:intergenic 40.0%
CACAAAGCTTTACCACCAAA+TGG - chr2.1:36294655-36294674 MS.gene81504:CDS 40.0%
CACACTGACCTTAAGTAGTA+TGG + chr2.1:36294455-36294474 None:intergenic 40.0%
GAAAGTTTGGGTAAACGATC+TGG - chr2.1:36294808-36294827 MS.gene81504:CDS 40.0%
GACGCATCTCGATTCATTTA+TGG - chr2.1:36294727-36294746 MS.gene81504:CDS 40.0%
TAGTGATACACTCTCTGCTA+TGG - chr2.1:36293524-36293543 MS.gene81504:CDS 40.0%
TCATTGCTAGCAGCAATGAT+GGG - chr2.1:36293613-36293632 MS.gene81504:CDS 40.0%
TGTAAAGTTCCATGACTTCG+AGG + chr2.1:36294873-36294892 None:intergenic 40.0%
TTAGGGATCCAACATATTGG+AGG - chr2.1:36294397-36294416 MS.gene81504:intron 40.0%
! AAAGCCTTGTGACACGTAAA+TGG + chr2.1:36293864-36293883 None:intergenic 40.0%
! GGTGCATTTTCAATCACTTG+AGG + chr2.1:36294270-36294289 None:intergenic 40.0%
! TCAACTATGGTTGATGTAGG+AGG - chr2.1:36294174-36294193 MS.gene81504:CDS 40.0%
!! ACAAGGCTTTGTTTGGAATG+TGG - chr2.1:36293874-36293893 MS.gene81504:intron 40.0%
!! TCTTGAGGGAGTATCAACTA+TGG - chr2.1:36294161-36294180 MS.gene81504:CDS 40.0%
AAGTTCCATGACTTCGAGGA+TGG + chr2.1:36294869-36294888 None:intergenic 45.0%
AATAGGTTACCTGGAGTAGG+TGG + chr2.1:36294291-36294310 None:intergenic 45.0%
ACACTCTCTGCTATGGTGTT+AGG - chr2.1:36293531-36293550 MS.gene81504:CDS 45.0%
ACTACTGTCACCTGTTTGTG+AGG + chr2.1:36293508-36293527 None:intergenic 45.0%
AGGAATAGGTTACCTGGAGT+AGG + chr2.1:36294294-36294313 None:intergenic 45.0%
AGTACTACCATCATCGTCGT+TGG + chr2.1:36293760-36293779 None:intergenic 45.0%
AGTAGTATGGCATCTCCTTG+TGG + chr2.1:36294442-36294461 None:intergenic 45.0%
ATGAATCGAGATGCGTCTGT+TGG + chr2.1:36294724-36294743 None:intergenic 45.0%
CACACCATTTACGTGTCACA+AGG - chr2.1:36293857-36293876 MS.gene81504:intron 45.0%
GAGTGTATGCCATAACTGGT+CGG - chr2.1:36294600-36294619 MS.gene81504:CDS 45.0%
GTTTATGGGGTCACTTCTTC+TGG - chr2.1:36293786-36293805 MS.gene81504:intron 45.0%
TTTCTCCATCCTCGAAGTCA+TGG - chr2.1:36294861-36294880 MS.gene81504:CDS 45.0%
! ACTATGGTTGATGTAGGAGG+TGG - chr2.1:36294177-36294196 MS.gene81504:CDS 45.0%
!! ACGTGTCACAAGGCTTTGTT+TGG - chr2.1:36293867-36293886 MS.gene81504:intron 45.0%
!! GGTAAGTCGGAGTGTTGATT+TGG + chr2.1:36293672-36293691 None:intergenic 45.0%
!! GTTTCTCACAGTTGGTGGAA+GGG - chr2.1:36294765-36294784 MS.gene81504:CDS 45.0%
!! TCTGTTGGTTCTGGAACATC+TGG + chr2.1:36294709-36294728 None:intergenic 45.0%
!! TGTTTCTCACAGTTGGTGGA+AGG - chr2.1:36294764-36294783 MS.gene81504:CDS 45.0%
AATCGCACCAACGACGATGA+TGG - chr2.1:36293750-36293769 MS.gene81504:CDS 50.0%
ATCATCGTCGTTGGTGCGAT+TGG + chr2.1:36293751-36293770 None:intergenic 50.0%
GAAAATGCACCACCTACTCC+AGG - chr2.1:36294279-36294298 MS.gene81504:CDS 50.0%
GGAACTCACACCTCACAAAC+AGG - chr2.1:36293495-36293514 MS.gene81504:CDS 50.0%
GTTGATGTAGGAGGTGGCAG+TGG - chr2.1:36294183-36294202 MS.gene81504:CDS 55.0%
!! CGAGATGCGTCTGTTGGTTC+TGG + chr2.1:36294718-36294737 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 36293477 36294897 36293477 ID=MS.gene81504
chr2.1 mRNA 36293477 36294897 36293477 ID=MS.gene81504.t1;Parent=MS.gene81504
chr2.1 exon 36294479 36294897 36294479 ID=MS.gene81504.t1.exon1;Parent=MS.gene81504.t1
chr2.1 CDS 36294479 36294897 36294479 ID=cds.MS.gene81504.t1;Parent=MS.gene81504.t1
chr2.1 exon 36294074 36294387 36294074 ID=MS.gene81504.t1.exon2;Parent=MS.gene81504.t1
chr2.1 CDS 36294074 36294387 36294074 ID=cds.MS.gene81504.t1;Parent=MS.gene81504.t1
chr2.1 exon 36293909 36293973 36293909 ID=MS.gene81504.t1.exon3;Parent=MS.gene81504.t1
chr2.1 CDS 36293909 36293973 36293909 ID=cds.MS.gene81504.t1;Parent=MS.gene81504.t1
chr2.1 exon 36293477 36293773 36293477 ID=MS.gene81504.t1.exon4;Parent=MS.gene81504.t1
chr2.1 CDS 36293477 36293773 36293477 ID=cds.MS.gene81504.t1;Parent=MS.gene81504.t1
Gene Sequence

>MS.gene81504

ATGAACAATAATGTTGTGGGAACTCACACCTCACAAACAGGTGACAGTAGTGATACACTCTCTGCTATGGTGTTAGGTTCTGTTATGGTTCTTCCTGCAGTTCTTAATGCTGCAATTGAGCTCAAATTATTTGATATCATTGCTAGCAGCAATGATGGGTTTATGTCAGTCTTTGAAATTGCTTCAAAGTTACCAAATCAACACTCCGACTTACCAAATAGACTCGATCGTGTGTTGTGCGTGCTTGCTAGCTACTCTCTTCTTTCTGTTTCCAATCGCACCAACGACGATGATGGTAGTACTTTGAGAGTTTATGGGGTCACTTCTTCTGGCAAATACTTTGTTGATGATGAAAATGATGGTGGTTATTTGGGCTCATTCACACCATTTACGTGTCACAAGGCTTTGTTTGGAATGTGGTAAGTGTTTCTAATTGATTAATTAGTAATAGTCCATATGCAAAGTGTTTGGAATGTTTTGATATATAGAAAAATTAAATTTGTATTGTAGGTCTAATTTCAAGGAAGTAATAGTGAATGAGGAGATTGACCTATTCAAGAAAGTTAATGGAATATCTATGTATGAGTACTTTGGAAAAGATTCACAAATAAACAAAATATTTAACAAATCAATGACTGATACATGCAATGTTGAGATTAGAAGAATCGTTGAAGAATACAAAGGTCTTGAGGGAGTATCAACTATGGTTGATGTAGGAGGTGGCAGTGGACAAAGTCTCAAAACGATTATTGCCAAATACCCATCAATAAAGGGAATAAATTTCGATCTTCCTCAAGTGATTGAAAATGCACCACCTACTCCAGGTAACCTATTCCTAAAGTTATATCCAATGATTACTTTCTATATATATTTTGAACTTTCTTAAGAGTTTAGATAAATTCAAAATTACCAAATTTCATTTAGGGATCCAACATATTGGAGGAAGCATGTTTGAAAGTGTTCCACAAGGAGATGCCATACTACTTAAGGTCAGTGTGTTGATGAAATAATTTAATTTATGAAACATTTATTTGCTTCAATTACAAGAATAACTTCATTTATTATCTACAAGAAATATAGTGCTTACAAAATTATTTTGTATTGAACCTCTCTCATTGTTTTAGAGTGTATGCCATAACTGGTCGGATGAACAATGCATACAAATTTTAAGCAATTGTCACAAAGCTTTACCACCAAATGGAAAGGTCATTATCATAGAGCTCGCAAAACCAGATGTTCCAGAACCAACAGACGCATCTCGATTCATTTATGGTATGGACAACATCATGTTTCTCACAGTTGGTGGAAGGGAAAGAACTTTGAAAGAATATGAAAGTTTGGGTAAACGATCTGGATTTGTTAAGTTTCAAGCTGCTTGTCGTGTTTTCTCCATCCTCGAAGTCATGGAACTTTACAAATAG

Protein sequence

>MS.gene81504.t1

MNNNVVGTHTSQTGDSSDTLSAMVLGSVMVLPAVLNAAIELKLFDIIASSNDGFMSVFEIASKLPNQHSDLPNRLDRVLCVLASYSLLSVSNRTNDDDGSTLRVYGVTSSGKYFVDDENDGGYLGSFTPFTCHKALFGMWSNFKEVIVNEEIDLFKKVNGISMYEYFGKDSQINKIFNKSMTDTCNVEIRRIVEEYKGLEGVSTMVDVGGGSGQSLKTIIAKYPSIKGINFDLPQVIENAPPTPGIQHIGGSMFESVPQGDAILLKSVCHNWSDEQCIQILSNCHKALPPNGKVIIIELAKPDVPEPTDASRFIYGMDNIMFLTVGGRERTLKEYESLGKRSGFVKFQAACRVFSILEVMELYK