Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81504.t1 | XP_013463978.1 | 95.1 | 364 | 17 | 1 | 1 | 364 | 1 | 363 | 1.70E-195 | 691.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81504.t1 | P93324 | 61.2 | 366 | 135 | 5 | 3 | 364 | 10 | 372 | 5.1e-124 | 445.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81504.t1 | A0A072V9H2 | 95.1 | 364 | 17 | 1 | 1 | 364 | 1 | 363 | 1.2e-195 | 691.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04925 | MS.gene81504 | 0.803551 | 3.30E-49 | -1.69E-46 |
MS.gene04926 | MS.gene81504 | 0.804897 | 1.73E-49 | -1.69E-46 |
MS.gene04932 | MS.gene81504 | 0.806236 | 9.07E-50 | -1.69E-46 |
MS.gene049549 | MS.gene81504 | 0.86845 | 6.47E-66 | -1.69E-46 |
MS.gene049813 | MS.gene81504 | 0.841624 | 4.24E-58 | -1.69E-46 |
MS.gene050095 | MS.gene81504 | 0.808227 | 3.44E-50 | -1.69E-46 |
MS.gene050344 | MS.gene81504 | 0.803336 | 3.66E-49 | -1.69E-46 |
MS.gene05104 | MS.gene81504 | 0.803238 | 3.84E-49 | -1.69E-46 |
MS.gene051127 | MS.gene81504 | 0.816374 | 5.71E-52 | -1.69E-46 |
MS.gene051131 | MS.gene81504 | 0.841355 | 5.00E-58 | -1.69E-46 |
MS.gene051440 | MS.gene81504 | 0.808757 | 2.65E-50 | -1.69E-46 |
MS.gene051973 | MS.gene81504 | 0.803923 | 2.76E-49 | -1.69E-46 |
MS.gene052211 | MS.gene81504 | 0.858259 | 9.32E-63 | -1.69E-46 |
MS.gene052212 | MS.gene81504 | 0.817876 | 2.63E-52 | -1.69E-46 |
MS.gene05240 | MS.gene81504 | 0.865317 | 6.45E-65 | -1.69E-46 |
MS.gene052606 | MS.gene81504 | 0.817197 | 3.74E-52 | -1.69E-46 |
MS.gene052702 | MS.gene81504 | 0.811114 | 8.23E-51 | -1.69E-46 |
MS.gene052705 | MS.gene81504 | 0.808622 | 2.83E-50 | -1.69E-46 |
MS.gene052706 | MS.gene81504 | 0.800325 | 1.52E-48 | -1.69E-46 |
MS.gene053031 | MS.gene81504 | 0.816364 | 5.75E-52 | -1.69E-46 |
MS.gene053406 | MS.gene81504 | 0.817772 | 2.77E-52 | -1.69E-46 |
MS.gene053420 | MS.gene81504 | 0.801138 | 1.04E-48 | -1.69E-46 |
MS.gene053488 | MS.gene81504 | 0.804091 | 2.55E-49 | -1.69E-46 |
MS.gene053887 | MS.gene81504 | 0.84096 | 6.35E-58 | -1.69E-46 |
MS.gene054146 | MS.gene81504 | 0.876901 | 9.66E-69 | -1.69E-46 |
MS.gene054147 | MS.gene81504 | 0.817734 | 2.83E-52 | -1.69E-46 |
MS.gene054277 | MS.gene81504 | 0.872123 | 4.05E-67 | -1.69E-46 |
MS.gene054742 | MS.gene81504 | 0.847142 | 1.39E-59 | -1.69E-46 |
MS.gene05483 | MS.gene81504 | 0.822894 | 1.86E-53 | -1.69E-46 |
MS.gene055240 | MS.gene81504 | 0.840251 | 9.73E-58 | -1.69E-46 |
MS.gene055977 | MS.gene81504 | 0.805611 | 1.23E-49 | -1.69E-46 |
MS.gene056218 | MS.gene81504 | 0.806646 | 7.43E-50 | -1.69E-46 |
MS.gene056224 | MS.gene81504 | 0.813189 | 2.90E-51 | -1.69E-46 |
MS.gene056359 | MS.gene81504 | 0.809775 | 1.60E-50 | -1.69E-46 |
MS.gene056590 | MS.gene81504 | 0.813991 | 1.93E-51 | -1.69E-46 |
MS.gene056591 | MS.gene81504 | 0.811636 | 6.34E-51 | -1.69E-46 |
MS.gene056713 | MS.gene81504 | 0.805078 | 1.59E-49 | -1.69E-46 |
MS.gene056715 | MS.gene81504 | 0.829533 | 4.88E-55 | -1.69E-46 |
MS.gene056748 | MS.gene81504 | 0.819905 | 9.08E-53 | -1.69E-46 |
MS.gene056856 | MS.gene81504 | 0.804715 | 1.89E-49 | -1.69E-46 |
MS.gene056920 | MS.gene81504 | 0.849389 | 3.34E-60 | -1.69E-46 |
MS.gene056922 | MS.gene81504 | 0.818342 | 2.06E-52 | -1.69E-46 |
MS.gene056988 | MS.gene81504 | 0.817717 | 2.85E-52 | -1.69E-46 |
MS.gene057261 | MS.gene81504 | 0.839505 | 1.52E-57 | -1.69E-46 |
MS.gene057505 | MS.gene81504 | 0.802958 | 4.38E-49 | -1.69E-46 |
MS.gene057544 | MS.gene81504 | 0.813228 | 2.85E-51 | -1.69E-46 |
MS.gene057550 | MS.gene81504 | 0.821911 | 3.14E-53 | -1.69E-46 |
MS.gene057820 | MS.gene81504 | 0.806414 | 8.32E-50 | -1.69E-46 |
MS.gene058099 | MS.gene81504 | 0.806423 | 8.29E-50 | -1.69E-46 |
MS.gene058381 | MS.gene81504 | 0.840109 | 1.06E-57 | -1.69E-46 |
MS.gene058450 | MS.gene81504 | 0.845054 | 5.16E-59 | -1.69E-46 |
MS.gene058603 | MS.gene81504 | 0.837443 | 5.18E-57 | -1.69E-46 |
MS.gene059060 | MS.gene81504 | 0.851804 | 6.99E-61 | -1.69E-46 |
MS.gene059265 | MS.gene81504 | 0.805107 | 1.57E-49 | -1.69E-46 |
MS.gene059953 | MS.gene81504 | 0.850337 | 1.81E-60 | -1.69E-46 |
MS.gene059955 | MS.gene81504 | 0.858255 | 9.34E-63 | -1.69E-46 |
MS.gene060087 | MS.gene81504 | 0.861351 | 1.09E-63 | -1.69E-46 |
MS.gene060358 | MS.gene81504 | 0.806204 | 9.22E-50 | -1.69E-46 |
MS.gene060593 | MS.gene81504 | 0.82031 | 7.34E-53 | -1.69E-46 |
MS.gene060790 | MS.gene81504 | 0.821387 | 4.15E-53 | -1.69E-46 |
MS.gene061038 | MS.gene81504 | 0.814519 | 1.48E-51 | -1.69E-46 |
MS.gene061092 | MS.gene81504 | 0.82411 | 9.64E-54 | -1.69E-46 |
MS.gene061094 | MS.gene81504 | 0.825657 | 4.16E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81504.t1 | MTR_2g055940 | 95.055 | 364 | 17 | 1 | 1 | 364 | 1 | 363 | 0.0 | 711 |
MS.gene81504.t1 | MTR_7g011900 | 75.207 | 363 | 87 | 3 | 3 | 364 | 10 | 370 | 0.0 | 565 |
MS.gene81504.t1 | MTR_7g011990 | 68.595 | 363 | 108 | 4 | 3 | 364 | 10 | 367 | 0.0 | 516 |
MS.gene81504.t1 | MTR_7g012020 | 68.871 | 363 | 110 | 3 | 3 | 364 | 9 | 369 | 0.0 | 515 |
MS.gene81504.t1 | MTR_7g012040 | 68.871 | 363 | 109 | 4 | 3 | 364 | 9 | 368 | 0.0 | 508 |
MS.gene81504.t1 | MTR_7g012090 | 63.315 | 368 | 127 | 4 | 3 | 364 | 10 | 375 | 3.67e-167 | 471 |
MS.gene81504.t1 | MTR_7g012070 | 63.043 | 368 | 128 | 4 | 3 | 364 | 10 | 375 | 5.21e-167 | 471 |
MS.gene81504.t1 | MTR_1g096310 | 61.475 | 366 | 134 | 5 | 3 | 364 | 10 | 372 | 1.04e-163 | 462 |
MS.gene81504.t1 | MTR_7g012020 | 71.698 | 265 | 72 | 3 | 3 | 266 | 9 | 271 | 3.21e-132 | 380 |
MS.gene81504.t1 | MTR_1g036460 | 50.272 | 368 | 172 | 7 | 3 | 364 | 8 | 370 | 5.29e-128 | 372 |
MS.gene81504.t1 | MTR_1g036490 | 50.543 | 368 | 171 | 8 | 3 | 364 | 8 | 370 | 1.26e-127 | 371 |
MS.gene81504.t1 | MTR_7g012020 | 71.951 | 246 | 66 | 3 | 3 | 247 | 9 | 252 | 8.08e-121 | 349 |
MS.gene81504.t1 | MTR_1g036510 | 51.282 | 351 | 162 | 6 | 20 | 364 | 37 | 384 | 3.42e-120 | 352 |
MS.gene81504.t1 | MTR_3g021440 | 50.852 | 352 | 168 | 5 | 15 | 364 | 22 | 370 | 8.60e-118 | 346 |
MS.gene81504.t1 | MTR_3g021430 | 49.860 | 357 | 174 | 5 | 10 | 364 | 4 | 357 | 1.54e-117 | 345 |
MS.gene81504.t1 | MTR_3g092900 | 43.407 | 364 | 197 | 7 | 3 | 364 | 7 | 363 | 6.23e-104 | 310 |
MS.gene81504.t1 | MTR_5g098170 | 41.504 | 359 | 201 | 8 | 10 | 364 | 10 | 363 | 2.31e-90 | 276 |
MS.gene81504.t1 | MTR_0591s0010 | 40.462 | 346 | 200 | 6 | 22 | 364 | 35 | 377 | 1.46e-86 | 266 |
MS.gene81504.t1 | MTR_1g050220 | 44.444 | 333 | 129 | 7 | 20 | 347 | 6 | 287 | 5.79e-86 | 262 |
MS.gene81504.t1 | MTR_7g118320 | 39.595 | 346 | 203 | 6 | 22 | 364 | 20 | 362 | 1.68e-82 | 255 |
MS.gene81504.t1 | MTR_6g060290 | 72.881 | 177 | 31 | 3 | 3 | 178 | 10 | 170 | 6.25e-82 | 247 |
MS.gene81504.t1 | MTR_7g118300 | 40.407 | 344 | 194 | 8 | 25 | 364 | 39 | 375 | 6.18e-81 | 252 |
MS.gene81504.t1 | MTR_8g068690 | 39.067 | 343 | 203 | 6 | 25 | 364 | 37 | 376 | 1.98e-80 | 251 |
MS.gene81504.t1 | MTR_1g036510 | 51.984 | 252 | 113 | 5 | 20 | 266 | 37 | 285 | 8.03e-80 | 246 |
MS.gene81504.t1 | MTR_8g068750 | 37.572 | 346 | 210 | 6 | 22 | 364 | 35 | 377 | 3.13e-78 | 245 |
MS.gene81504.t1 | MTR_8g068870 | 36.494 | 348 | 215 | 6 | 20 | 364 | 19 | 363 | 1.16e-74 | 235 |
MS.gene81504.t1 | MTR_8g068570 | 38.658 | 313 | 160 | 7 | 22 | 331 | 35 | 318 | 2.73e-68 | 218 |
MS.gene81504.t1 | MTR_8g024160 | 40.068 | 292 | 165 | 6 | 77 | 364 | 43 | 328 | 4.49e-68 | 217 |
MS.gene81504.t1 | MTR_1g036510 | 49.784 | 231 | 108 | 5 | 20 | 245 | 37 | 264 | 1.35e-67 | 214 |
MS.gene81504.t1 | MTR_6g078850 | 36.338 | 355 | 217 | 7 | 15 | 362 | 32 | 384 | 1.15e-66 | 219 |
MS.gene81504.t1 | MTR_8g068730 | 35.549 | 346 | 185 | 7 | 22 | 364 | 35 | 345 | 3.53e-62 | 202 |
MS.gene81504.t1 | MTR_2g072790 | 33.046 | 348 | 214 | 8 | 10 | 349 | 4 | 340 | 3.21e-57 | 190 |
MS.gene81504.t1 | MTR_3g096050 | 34.409 | 372 | 222 | 11 | 1 | 364 | 1 | 358 | 5.33e-56 | 187 |
MS.gene81504.t1 | MTR_8g068690 | 37.603 | 242 | 147 | 4 | 29 | 268 | 41 | 280 | 1.91e-52 | 176 |
MS.gene81504.t1 | MTR_3g096070 | 33.239 | 355 | 197 | 11 | 1 | 349 | 1 | 321 | 9.67e-52 | 175 |
MS.gene81504.t1 | MTR_0017s0100 | 34.421 | 337 | 200 | 13 | 35 | 363 | 44 | 367 | 1.31e-49 | 171 |
MS.gene81504.t1 | MTR_0079s0070 | 34.783 | 322 | 188 | 10 | 35 | 347 | 10 | 318 | 4.40e-49 | 168 |
MS.gene81504.t1 | MTR_4g038440 | 34.783 | 322 | 188 | 10 | 35 | 347 | 44 | 352 | 9.62e-49 | 168 |
MS.gene81504.t1 | MTR_8g068600 | 36.245 | 229 | 142 | 4 | 40 | 266 | 27 | 253 | 1.79e-44 | 155 |
MS.gene81504.t1 | MTR_3g083620 | 31.962 | 316 | 200 | 7 | 33 | 344 | 38 | 342 | 1.10e-43 | 155 |
MS.gene81504.t1 | MTR_8g068740 | 35.249 | 261 | 133 | 5 | 22 | 280 | 35 | 261 | 1.33e-43 | 152 |
MS.gene81504.t1 | MTR_5g074600 | 31.387 | 274 | 173 | 7 | 99 | 363 | 91 | 358 | 3.12e-43 | 154 |
MS.gene81504.t1 | MTR_5g074680 | 29.532 | 342 | 212 | 10 | 35 | 363 | 34 | 359 | 7.09e-43 | 152 |
MS.gene81504.t1 | MTR_4g088340 | 28.994 | 338 | 222 | 8 | 32 | 363 | 7 | 332 | 3.18e-39 | 142 |
MS.gene81504.t1 | MTR_4g088345 | 28.402 | 338 | 224 | 7 | 32 | 363 | 30 | 355 | 4.55e-39 | 142 |
MS.gene81504.t1 | MTR_5g074540 | 34.101 | 217 | 132 | 4 | 140 | 348 | 113 | 326 | 7.83e-38 | 139 |
MS.gene81504.t1 | MTR_3g096050 | 35.433 | 254 | 154 | 6 | 16 | 266 | 13 | 259 | 8.26e-38 | 137 |
MS.gene81504.t1 | MTR_5g074580 | 27.566 | 341 | 220 | 11 | 35 | 363 | 34 | 359 | 9.72e-38 | 139 |
MS.gene81504.t1 | MTR_1g076940 | 28.438 | 320 | 217 | 6 | 35 | 348 | 33 | 346 | 6.66e-37 | 137 |
MS.gene81504.t1 | MTR_4g033015 | 29.341 | 334 | 224 | 7 | 34 | 359 | 32 | 361 | 1.10e-35 | 134 |
MS.gene81504.t1 | MTR_4g033200 | 29.042 | 334 | 225 | 7 | 34 | 359 | 32 | 361 | 7.77e-35 | 131 |
MS.gene81504.t1 | MTR_4g088200 | 28.972 | 321 | 216 | 7 | 34 | 348 | 32 | 346 | 9.10e-35 | 131 |
MS.gene81504.t1 | MTR_7g014570 | 31.915 | 235 | 149 | 5 | 135 | 363 | 122 | 351 | 2.26e-34 | 130 |
MS.gene81504.t1 | MTR_4g079160 | 34.694 | 196 | 120 | 4 | 159 | 348 | 147 | 340 | 3.06e-34 | 129 |
MS.gene81504.t1 | MTR_4g033150 | 28.743 | 334 | 226 | 7 | 34 | 359 | 32 | 361 | 3.24e-34 | 129 |
MS.gene81504.t1 | MTR_7g024520 | 33.824 | 204 | 129 | 4 | 163 | 362 | 147 | 348 | 6.20e-34 | 129 |
MS.gene81504.t1 | MTR_8g068620 | 47.706 | 109 | 57 | 0 | 158 | 266 | 2 | 110 | 1.35e-33 | 121 |
MS.gene81504.t1 | MTR_7g014510 | 26.471 | 306 | 209 | 6 | 63 | 363 | 62 | 356 | 1.66e-33 | 127 |
MS.gene81504.t1 | MTR_7g024500 | 26.625 | 323 | 215 | 9 | 32 | 348 | 29 | 335 | 2.10e-33 | 127 |
MS.gene81504.t1 | MTR_4g088190 | 29.503 | 322 | 216 | 7 | 34 | 348 | 32 | 349 | 3.53e-30 | 119 |
MS.gene81504.t1 | MTR_5g074610 | 29.098 | 244 | 139 | 5 | 126 | 363 | 110 | 325 | 5.44e-30 | 117 |
MS.gene81504.t1 | MTR_4g038440 | 34.310 | 239 | 138 | 7 | 35 | 266 | 44 | 270 | 1.47e-29 | 115 |
MS.gene81504.t1 | MTR_4g033170 | 29.924 | 264 | 160 | 8 | 34 | 288 | 32 | 279 | 5.60e-26 | 107 |
MS.gene81504.t1 | MTR_4g033085 | 29.658 | 263 | 160 | 8 | 34 | 287 | 32 | 278 | 1.94e-24 | 102 |
MS.gene81504.t1 | MTR_1g076930 | 24.790 | 238 | 169 | 5 | 32 | 266 | 7 | 237 | 2.74e-20 | 89.4 |
MS.gene81504.t1 | MTR_6g060280 | 69.355 | 62 | 13 | 2 | 219 | 275 | 2 | 62 | 3.12e-20 | 84.3 |
MS.gene81504.t1 | MTR_8g068760 | 38.000 | 100 | 60 | 2 | 266 | 364 | 135 | 233 | 4.63e-16 | 77.0 |
MS.gene81504.t1 | MTR_8g068760 | 33.600 | 125 | 80 | 3 | 20 | 142 | 20 | 143 | 6.67e-11 | 62.0 |
MS.gene81504.t1 | MTR_0794s0020 | 25.792 | 221 | 157 | 5 | 34 | 251 | 32 | 248 | 3.65e-15 | 74.7 |
MS.gene81504.t1 | MTR_8g068580 | 42.391 | 92 | 51 | 2 | 274 | 364 | 43 | 133 | 1.29e-14 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81504.t1 | AT5G54160 | 44.633 | 354 | 190 | 6 | 12 | 364 | 13 | 361 | 1.56e-102 | 307 |
MS.gene81504.t1 | AT1G77520 | 38.136 | 354 | 209 | 7 | 19 | 364 | 30 | 381 | 7.45e-83 | 257 |
MS.gene81504.t1 | AT1G51990 | 39.286 | 336 | 198 | 5 | 13 | 344 | 10 | 343 | 8.52e-83 | 256 |
MS.gene81504.t1 | AT1G51990 | 38.988 | 336 | 199 | 5 | 13 | 344 | 10 | 343 | 1.58e-82 | 256 |
MS.gene81504.t1 | AT1G77530 | 40.678 | 354 | 200 | 7 | 19 | 364 | 30 | 381 | 7.80e-79 | 247 |
MS.gene81504.t1 | AT1G33030 | 39.535 | 344 | 195 | 8 | 22 | 358 | 10 | 347 | 6.19e-78 | 243 |
MS.gene81504.t1 | AT1G63140 | 38.136 | 354 | 209 | 8 | 19 | 364 | 30 | 381 | 1.86e-76 | 241 |
MS.gene81504.t1 | AT1G63140 | 38.136 | 354 | 209 | 8 | 19 | 364 | 50 | 401 | 2.91e-76 | 241 |
MS.gene81504.t1 | AT1G21100 | 39.255 | 349 | 197 | 9 | 15 | 354 | 22 | 364 | 6.48e-70 | 223 |
MS.gene81504.t1 | AT5G53810 | 37.719 | 342 | 202 | 8 | 32 | 364 | 39 | 378 | 2.35e-69 | 222 |
MS.gene81504.t1 | AT1G21130 | 38.968 | 349 | 198 | 9 | 15 | 354 | 22 | 364 | 1.57e-68 | 220 |
MS.gene81504.t1 | AT1G21110 | 38.682 | 349 | 199 | 9 | 15 | 354 | 22 | 364 | 6.28e-67 | 216 |
MS.gene81504.t1 | AT1G21120 | 38.395 | 349 | 200 | 9 | 15 | 354 | 22 | 364 | 6.03e-66 | 213 |
MS.gene81504.t1 | AT1G76790 | 37.701 | 374 | 209 | 11 | 6 | 364 | 1 | 365 | 1.49e-65 | 212 |
MS.gene81504.t1 | AT1G21120 | 38.395 | 349 | 200 | 9 | 15 | 354 | 70 | 412 | 2.91e-65 | 213 |
MS.gene81504.t1 | AT3G53140 | 34.795 | 342 | 199 | 8 | 20 | 348 | 14 | 344 | 3.71e-59 | 195 |
MS.gene81504.t1 | AT1G62900 | 42.233 | 206 | 116 | 3 | 161 | 364 | 1 | 205 | 2.14e-57 | 186 |
MS.gene81504.t1 | AT5G37170 | 33.133 | 332 | 181 | 9 | 41 | 364 | 36 | 334 | 1.48e-51 | 175 |
MS.gene81504.t1 | AT5G37170 | 41.414 | 198 | 112 | 4 | 170 | 364 | 38 | 234 | 2.03e-51 | 171 |
MS.gene81504.t1 | AT1G33030 | 39.600 | 250 | 145 | 5 | 22 | 269 | 10 | 255 | 5.23e-51 | 171 |
MS.gene81504.t1 | AT1G33030 | 39.676 | 247 | 143 | 5 | 22 | 266 | 10 | 252 | 2.99e-50 | 169 |
MS.gene81504.t1 | AT5G37170 | 41.176 | 187 | 106 | 4 | 181 | 364 | 1 | 186 | 3.69e-48 | 161 |
MS.gene81504.t1 | AT1G63140 | 36.614 | 254 | 154 | 5 | 19 | 266 | 50 | 302 | 2.48e-44 | 155 |
MS.gene81504.t1 | AT1G77530 | 38.298 | 235 | 138 | 4 | 19 | 247 | 30 | 263 | 1.43e-39 | 141 |
MS.gene81504.t1 | AT1G21130 | 37.838 | 259 | 148 | 7 | 15 | 266 | 22 | 274 | 4.21e-39 | 141 |
MS.gene81504.t1 | AT4G35150 | 31.687 | 243 | 148 | 7 | 123 | 348 | 68 | 309 | 3.94e-38 | 139 |
MS.gene81504.t1 | AT4G35160 | 33.840 | 263 | 150 | 8 | 105 | 348 | 109 | 366 | 2.14e-36 | 136 |
MS.gene81504.t1 | AT1G63140 | 35.319 | 235 | 145 | 5 | 19 | 247 | 50 | 283 | 6.64e-34 | 127 |
Find 78 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTAGTACTTTGAGAGTTTA+TGG | 0.138774 | 2.1:-36294581 | MS.gene81504:CDS |
TCCCTTTATTGATGGGTATT+TGG | 0.140968 | 2.1:+36294123 | None:intergenic |
GACGCATCTCGATTCATTTA+TGG | 0.185909 | 2.1:-36293625 | MS.gene81504:CDS |
TGAAAATGATGGTGGTTATT+TGG | 0.190360 | 2.1:-36294525 | MS.gene81504:CDS |
GACCTATTCAAGAAAGTTAA+TGG | 0.210657 | 2.1:-36294328 | MS.gene81504:CDS |
TTTGAAAGAATATGAAAGTT+TGG | 0.223106 | 2.1:-36293557 | MS.gene81504:CDS |
AACACACGATCGAGTCTATT+TGG | 0.269441 | 2.1:+36294662 | None:intergenic |
TGCCAAATACCCATCAATAA+AGG | 0.282531 | 2.1:-36294125 | MS.gene81504:CDS |
CGAGATGCGTCTGTTGGTTC+TGG | 0.300236 | 2.1:+36293637 | None:intergenic |
GTTTATGGGGTCACTTCTTC+TGG | 0.301463 | 2.1:-36294566 | MS.gene81504:CDS |
AAAGCCTTGTGACACGTAAA+TGG | 0.333581 | 2.1:+36294491 | None:intergenic |
TTCCATTAACTTTCTTGAAT+AGG | 0.343440 | 2.1:+36294326 | None:intergenic |
TTGAAAGAATATGAAAGTTT+GGG | 0.349066 | 2.1:-36293556 | MS.gene81504:CDS |
GAAAATGATGGTGGTTATTT+GGG | 0.349287 | 2.1:-36294524 | MS.gene81504:CDS |
CACACTGACCTTAAGTAGTA+TGG | 0.352819 | 2.1:+36293900 | None:intergenic |
TTTAGAGTGTATGCCATAAC+TGG | 0.370585 | 2.1:-36293756 | MS.gene81504:intron |
AAATTTATTCCCTTTATTGA+TGG | 0.372401 | 2.1:+36294115 | None:intergenic |
CATTTAGGGATCCAACATAT+TGG | 0.374317 | 2.1:-36293958 | MS.gene81504:intron |
ACACTCTCTGCTATGGTGTT+AGG | 0.375320 | 2.1:-36294821 | MS.gene81504:CDS |
GGTAAGTCGGAGTGTTGATT+TGG | 0.380815 | 2.1:+36294683 | None:intergenic |
GTAGTACTTTGAGAGTTTAT+GGG | 0.390682 | 2.1:-36294580 | MS.gene81504:CDS |
GCCAAATACCCATCAATAAA+GGG | 0.393194 | 2.1:-36294124 | MS.gene81504:CDS |
ATCATCGTCGTTGGTGCGAT+TGG | 0.398696 | 2.1:+36294604 | None:intergenic |
TCTGTTGGTTCTGGAACATC+TGG | 0.401209 | 2.1:+36293646 | None:intergenic |
TATGGTGTTAGGTTCTGTTA+TGG | 0.402609 | 2.1:-36294810 | MS.gene81504:CDS |
ACGTGTCACAAGGCTTTGTT+TGG | 0.404762 | 2.1:-36294485 | MS.gene81504:CDS |
ATGATAATGACCTTTCCATT+TGG | 0.411682 | 2.1:+36293682 | None:intergenic |
GAAAGTTTGGGTAAACGATC+TGG | 0.423215 | 2.1:-36293544 | MS.gene81504:CDS |
CACAAAGCTTTACCACCAAA+TGG | 0.425024 | 2.1:-36293697 | MS.gene81504:CDS |
AGGAGATGCCATACTACTTA+AGG | 0.430145 | 2.1:-36293908 | MS.gene81504:intron |
AATTTATTCCCTTTATTGAT+GGG | 0.442350 | 2.1:+36294116 | None:intergenic |
ATCATTGCTAGCAGCAATGA+TGG | 0.449753 | 2.1:-36294740 | MS.gene81504:CDS |
ATATCTATGTATGAGTACTT+TGG | 0.452220 | 2.1:-36294304 | MS.gene81504:CDS |
ATTGTTCATCCGACCAGTTA+TGG | 0.467416 | 2.1:+36293743 | None:intergenic |
GGAACTCACACCTCACAAAC+AGG | 0.473367 | 2.1:-36294857 | MS.gene81504:CDS |
ATAATGACCTTTCCATTTGG+TGG | 0.479304 | 2.1:+36293685 | None:intergenic |
CAAGGAAGTAATAGTGAATG+AGG | 0.480422 | 2.1:-36294356 | MS.gene81504:CDS |
ATCTCGATTCATTTATGGTA+TGG | 0.481444 | 2.1:-36293620 | MS.gene81504:CDS |
TCTTGAGGGAGTATCAACTA+TGG | 0.481625 | 2.1:-36294191 | MS.gene81504:CDS |
TGTAAAGTTCCATGACTTCG+AGG | 0.482194 | 2.1:+36293482 | None:intergenic |
GTATTGTAGGTCTAATTTCA+AGG | 0.496292 | 2.1:-36294374 | MS.gene81504:intron |
AACATCATGTTTCTCACAGT+TGG | 0.505124 | 2.1:-36293595 | MS.gene81504:CDS |
ATCATGTTTCTCACAGTTGG+TGG | 0.507213 | 2.1:-36293592 | MS.gene81504:CDS |
AATCGCACCAACGACGATGA+TGG | 0.508623 | 2.1:-36294602 | MS.gene81504:CDS |
GAAGAATACAAAGGTCTTGA+GGG | 0.514865 | 2.1:-36294205 | MS.gene81504:CDS |
TTTCTCCATCCTCGAAGTCA+TGG | 0.521750 | 2.1:-36293491 | MS.gene81504:CDS |
GTATCAACTATGGTTGATGT+AGG | 0.524001 | 2.1:-36294181 | MS.gene81504:CDS |
TGTTTCTCACAGTTGGTGGA+AGG | 0.527248 | 2.1:-36293588 | MS.gene81504:CDS |
ACATGCTTCCTCCAATATGT+TGG | 0.534854 | 2.1:+36293947 | None:intergenic |
GTTTCTCACAGTTGGTGGAA+GGG | 0.541114 | 2.1:-36293587 | MS.gene81504:CDS |
TGAAGAATACAAAGGTCTTG+AGG | 0.547774 | 2.1:-36294206 | MS.gene81504:CDS |
CACACCATTTACGTGTCACA+AGG | 0.550198 | 2.1:-36294495 | MS.gene81504:CDS |
ATTGCAGCATTAAGAACTGC+AGG | 0.551711 | 2.1:+36294782 | None:intergenic |
TTTGTTGATGATGAAAATGA+TGG | 0.552091 | 2.1:-36294536 | MS.gene81504:CDS |
ATCGAGTCTATTTGGTAAGT+CGG | 0.554297 | 2.1:+36294670 | None:intergenic |
AAGTTCCATGACTTCGAGGA+TGG | 0.560276 | 2.1:+36293486 | None:intergenic |
TTAGGGATCCAACATATTGG+AGG | 0.566339 | 2.1:-36293955 | MS.gene81504:intron |
ACTACTGTCACCTGTTTGTG+AGG | 0.573457 | 2.1:+36294847 | None:intergenic |
GAAAATGAACAATAATGTTG+TGG | 0.578225 | 2.1:-36294879 | None:intergenic |
AAAATGAACAATAATGTTGT+GGG | 0.579380 | 2.1:-36294878 | MS.gene81504:CDS |
TAGTGATACACTCTCTGCTA+TGG | 0.581019 | 2.1:-36294828 | MS.gene81504:CDS |
GTTGATGTAGGAGGTGGCAG+TGG | 0.588462 | 2.1:-36294169 | MS.gene81504:CDS |
TAGTACTTTGAGAGTTTATG+GGG | 0.589839 | 2.1:-36294579 | MS.gene81504:CDS |
GAAAATGCACCACCTACTCC+AGG | 0.597174 | 2.1:-36294073 | MS.gene81504:intron |
TCATTGCTAGCAGCAATGAT+GGG | 0.598613 | 2.1:-36294739 | MS.gene81504:CDS |
GTTGATGATGAAAATGATGG+TGG | 0.599361 | 2.1:-36294533 | MS.gene81504:CDS |
ATGAATCGAGATGCGTCTGT+TGG | 0.600546 | 2.1:+36293631 | None:intergenic |
AGTAGTATGGCATCTCCTTG+TGG | 0.601193 | 2.1:+36293913 | None:intergenic |
AGGAATAGGTTACCTGGAGT+AGG | 0.602035 | 2.1:+36294061 | None:intergenic |
TCAACTATGGTTGATGTAGG+AGG | 0.605473 | 2.1:-36294178 | MS.gene81504:CDS |
ACTATGGTTGATGTAGGAGG+TGG | 0.606248 | 2.1:-36294175 | MS.gene81504:CDS |
AATAGGTTACCTGGAGTAGG+TGG | 0.622764 | 2.1:+36294064 | None:intergenic |
AGCTTTACCACCAAATGGAA+AGG | 0.624460 | 2.1:-36293692 | MS.gene81504:CDS |
ACAAGGCTTTGTTTGGAATG+TGG | 0.625990 | 2.1:-36294478 | MS.gene81504:intron |
AGTACTACCATCATCGTCGT+TGG | 0.626740 | 2.1:+36294595 | None:intergenic |
GAGTGTATGCCATAACTGGT+CGG | 0.668148 | 2.1:-36293752 | MS.gene81504:CDS |
AGAATCGTTGAAGAATACAA+AGG | 0.668990 | 2.1:-36294214 | MS.gene81504:CDS |
ATGTTTGAAAGTGTTCCACA+AGG | 0.704402 | 2.1:-36293928 | MS.gene81504:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTAAATTTGTATTGT+AGG | - | chr2.1:36293965-36293984 | MS.gene81504:intron | 10.0% |
!! | AAAATTACCAAATTTCATTT+AGG | - | chr2.1:36294379-36294398 | MS.gene81504:intron | 15.0% |
!! | AAATTACCAAATTTCATTTA+GGG | - | chr2.1:36294380-36294399 | MS.gene81504:intron | 15.0% |
!! | TATATATAGAAAGTAATCAT+TGG | + | chr2.1:36294327-36294346 | None:intergenic | 15.0% |
!! | AAATTTATTCCCTTTATTGA+TGG | + | chr2.1:36294240-36294259 | None:intergenic | 20.0% |
!! | AATTTATTCCCTTTATTGAT+GGG | + | chr2.1:36294239-36294258 | None:intergenic | 20.0% |
!! | TAATCATTGGATATAACTTT+AGG | + | chr2.1:36294314-36294333 | None:intergenic | 20.0% |
!! | TTGAAAGAATATGAAAGTTT+GGG | - | chr2.1:36294796-36294815 | MS.gene81504:CDS | 20.0% |
!! | TTTGAAAGAATATGAAAGTT+TGG | - | chr2.1:36294795-36294814 | MS.gene81504:CDS | 20.0% |
! | ATATCTATGTATGAGTACTT+TGG | - | chr2.1:36294048-36294067 | MS.gene81504:intron | 25.0% |
! | TTCCATTAACTTTCTTGAAT+AGG | + | chr2.1:36294029-36294048 | None:intergenic | 25.0% |
!! | TTGGATATAACTTTAGGAAT+AGG | + | chr2.1:36294308-36294327 | None:intergenic | 25.0% |
!!! | TTTGTTGATGATGAAAATGA+TGG | - | chr2.1:36293816-36293835 | MS.gene81504:intron | 25.0% |
AGAATCGTTGAAGAATACAA+AGG | - | chr2.1:36294138-36294157 | MS.gene81504:CDS | 30.0% | |
ATCTCGATTCATTTATGGTA+TGG | - | chr2.1:36294732-36294751 | MS.gene81504:CDS | 30.0% | |
GACCTATTCAAGAAAGTTAA+TGG | - | chr2.1:36294024-36294043 | MS.gene81504:intron | 30.0% | |
GTATTGTAGGTCTAATTTCA+AGG | - | chr2.1:36293978-36293997 | MS.gene81504:intron | 30.0% | |
TTGGATCCCTAAATGAAATT+TGG | + | chr2.1:36294389-36294408 | None:intergenic | 30.0% | |
! | ATGATAATGACCTTTCCATT+TGG | + | chr2.1:36294673-36294692 | None:intergenic | 30.0% |
! | GTAGTACTTTGAGAGTTTAT+GGG | - | chr2.1:36293772-36293791 | MS.gene81504:intron | 30.0% |
! | TAGTACTTTGAGAGTTTATG+GGG | - | chr2.1:36293773-36293792 | MS.gene81504:intron | 30.0% |
!! | GAAAATGATGGTGGTTATTT+GGG | - | chr2.1:36293828-36293847 | MS.gene81504:intron | 30.0% |
!! | TGAAAATGATGGTGGTTATT+TGG | - | chr2.1:36293827-36293846 | MS.gene81504:intron | 30.0% |
AACATCATGTTTCTCACAGT+TGG | - | chr2.1:36294757-36294776 | MS.gene81504:CDS | 35.0% | |
ATAATGACCTTTCCATTTGG+TGG | + | chr2.1:36294670-36294689 | None:intergenic | 35.0% | |
ATCGAGTCTATTTGGTAAGT+CGG | + | chr2.1:36293685-36293704 | None:intergenic | 35.0% | |
CAAGGAAGTAATAGTGAATG+AGG | - | chr2.1:36293996-36294015 | MS.gene81504:intron | 35.0% | |
CATTCCAAACACTTTGCATA+TGG | + | chr2.1:36293932-36293951 | None:intergenic | 35.0% | |
CATTTAGGGATCCAACATAT+TGG | - | chr2.1:36294394-36294413 | MS.gene81504:intron | 35.0% | |
GAAGAATACAAAGGTCTTGA+GGG | - | chr2.1:36294147-36294166 | MS.gene81504:CDS | 35.0% | |
GCCAAATACCCATCAATAAA+GGG | - | chr2.1:36294228-36294247 | MS.gene81504:CDS | 35.0% | |
TGAAGAATACAAAGGTCTTG+AGG | - | chr2.1:36294146-36294165 | MS.gene81504:CDS | 35.0% | |
TGCCAAATACCCATCAATAA+AGG | - | chr2.1:36294227-36294246 | MS.gene81504:CDS | 35.0% | |
! | AACTTTAGGAATAGGTTACC+TGG | + | chr2.1:36294300-36294319 | None:intergenic | 35.0% |
! | GGTAGTACTTTGAGAGTTTA+TGG | - | chr2.1:36293771-36293790 | MS.gene81504:intron | 35.0% |
! | GTATCAACTATGGTTGATGT+AGG | - | chr2.1:36294171-36294190 | MS.gene81504:CDS | 35.0% |
! | TAGTCCATATGCAAAGTGTT+TGG | - | chr2.1:36293925-36293944 | MS.gene81504:CDS | 35.0% |
! | TATGGTGTTAGGTTCTGTTA+TGG | - | chr2.1:36293542-36293561 | MS.gene81504:CDS | 35.0% |
! | TCCCTTTATTGATGGGTATT+TGG | + | chr2.1:36294232-36294251 | None:intergenic | 35.0% |
! | TTTAGAGTGTATGCCATAAC+TGG | - | chr2.1:36294596-36294615 | MS.gene81504:CDS | 35.0% |
!! | ACACTCTAAAACAATGAGAG+AGG | + | chr2.1:36294586-36294605 | None:intergenic | 35.0% |
!! | ATGTTTGAAAGTGTTCCACA+AGG | - | chr2.1:36294424-36294443 | MS.gene81504:intron | 35.0% |
!! | GTTGATGATGAAAATGATGG+TGG | - | chr2.1:36293819-36293838 | MS.gene81504:intron | 35.0% |
AACACACGATCGAGTCTATT+TGG | + | chr2.1:36293693-36293712 | None:intergenic | 40.0% | |
ACATGCTTCCTCCAATATGT+TGG | + | chr2.1:36294408-36294427 | None:intergenic | 40.0% | |
AGCTTTACCACCAAATGGAA+AGG | - | chr2.1:36294660-36294679 | MS.gene81504:CDS | 40.0% | |
AGGAGATGCCATACTACTTA+AGG | - | chr2.1:36294444-36294463 | MS.gene81504:intron | 40.0% | |
ATCATGTTTCTCACAGTTGG+TGG | - | chr2.1:36294760-36294779 | MS.gene81504:CDS | 40.0% | |
ATCATTGCTAGCAGCAATGA+TGG | - | chr2.1:36293612-36293631 | MS.gene81504:CDS | 40.0% | |
ATTGCAGCATTAAGAACTGC+AGG | + | chr2.1:36293573-36293592 | None:intergenic | 40.0% | |
ATTGTTCATCCGACCAGTTA+TGG | + | chr2.1:36294612-36294631 | None:intergenic | 40.0% | |
CACAAAGCTTTACCACCAAA+TGG | - | chr2.1:36294655-36294674 | MS.gene81504:CDS | 40.0% | |
CACACTGACCTTAAGTAGTA+TGG | + | chr2.1:36294455-36294474 | None:intergenic | 40.0% | |
GAAAGTTTGGGTAAACGATC+TGG | - | chr2.1:36294808-36294827 | MS.gene81504:CDS | 40.0% | |
GACGCATCTCGATTCATTTA+TGG | - | chr2.1:36294727-36294746 | MS.gene81504:CDS | 40.0% | |
TAGTGATACACTCTCTGCTA+TGG | - | chr2.1:36293524-36293543 | MS.gene81504:CDS | 40.0% | |
TCATTGCTAGCAGCAATGAT+GGG | - | chr2.1:36293613-36293632 | MS.gene81504:CDS | 40.0% | |
TGTAAAGTTCCATGACTTCG+AGG | + | chr2.1:36294873-36294892 | None:intergenic | 40.0% | |
TTAGGGATCCAACATATTGG+AGG | - | chr2.1:36294397-36294416 | MS.gene81504:intron | 40.0% | |
! | AAAGCCTTGTGACACGTAAA+TGG | + | chr2.1:36293864-36293883 | None:intergenic | 40.0% |
! | GGTGCATTTTCAATCACTTG+AGG | + | chr2.1:36294270-36294289 | None:intergenic | 40.0% |
! | TCAACTATGGTTGATGTAGG+AGG | - | chr2.1:36294174-36294193 | MS.gene81504:CDS | 40.0% |
!! | ACAAGGCTTTGTTTGGAATG+TGG | - | chr2.1:36293874-36293893 | MS.gene81504:intron | 40.0% |
!! | TCTTGAGGGAGTATCAACTA+TGG | - | chr2.1:36294161-36294180 | MS.gene81504:CDS | 40.0% |
AAGTTCCATGACTTCGAGGA+TGG | + | chr2.1:36294869-36294888 | None:intergenic | 45.0% | |
AATAGGTTACCTGGAGTAGG+TGG | + | chr2.1:36294291-36294310 | None:intergenic | 45.0% | |
ACACTCTCTGCTATGGTGTT+AGG | - | chr2.1:36293531-36293550 | MS.gene81504:CDS | 45.0% | |
ACTACTGTCACCTGTTTGTG+AGG | + | chr2.1:36293508-36293527 | None:intergenic | 45.0% | |
AGGAATAGGTTACCTGGAGT+AGG | + | chr2.1:36294294-36294313 | None:intergenic | 45.0% | |
AGTACTACCATCATCGTCGT+TGG | + | chr2.1:36293760-36293779 | None:intergenic | 45.0% | |
AGTAGTATGGCATCTCCTTG+TGG | + | chr2.1:36294442-36294461 | None:intergenic | 45.0% | |
ATGAATCGAGATGCGTCTGT+TGG | + | chr2.1:36294724-36294743 | None:intergenic | 45.0% | |
CACACCATTTACGTGTCACA+AGG | - | chr2.1:36293857-36293876 | MS.gene81504:intron | 45.0% | |
GAGTGTATGCCATAACTGGT+CGG | - | chr2.1:36294600-36294619 | MS.gene81504:CDS | 45.0% | |
GTTTATGGGGTCACTTCTTC+TGG | - | chr2.1:36293786-36293805 | MS.gene81504:intron | 45.0% | |
TTTCTCCATCCTCGAAGTCA+TGG | - | chr2.1:36294861-36294880 | MS.gene81504:CDS | 45.0% | |
! | ACTATGGTTGATGTAGGAGG+TGG | - | chr2.1:36294177-36294196 | MS.gene81504:CDS | 45.0% |
!! | ACGTGTCACAAGGCTTTGTT+TGG | - | chr2.1:36293867-36293886 | MS.gene81504:intron | 45.0% |
!! | GGTAAGTCGGAGTGTTGATT+TGG | + | chr2.1:36293672-36293691 | None:intergenic | 45.0% |
!! | GTTTCTCACAGTTGGTGGAA+GGG | - | chr2.1:36294765-36294784 | MS.gene81504:CDS | 45.0% |
!! | TCTGTTGGTTCTGGAACATC+TGG | + | chr2.1:36294709-36294728 | None:intergenic | 45.0% |
!! | TGTTTCTCACAGTTGGTGGA+AGG | - | chr2.1:36294764-36294783 | MS.gene81504:CDS | 45.0% |
AATCGCACCAACGACGATGA+TGG | - | chr2.1:36293750-36293769 | MS.gene81504:CDS | 50.0% | |
ATCATCGTCGTTGGTGCGAT+TGG | + | chr2.1:36293751-36293770 | None:intergenic | 50.0% | |
GAAAATGCACCACCTACTCC+AGG | - | chr2.1:36294279-36294298 | MS.gene81504:CDS | 50.0% | |
GGAACTCACACCTCACAAAC+AGG | - | chr2.1:36293495-36293514 | MS.gene81504:CDS | 50.0% | |
GTTGATGTAGGAGGTGGCAG+TGG | - | chr2.1:36294183-36294202 | MS.gene81504:CDS | 55.0% | |
!! | CGAGATGCGTCTGTTGGTTC+TGG | + | chr2.1:36294718-36294737 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 36293477 | 36294897 | 36293477 | ID=MS.gene81504 |
chr2.1 | mRNA | 36293477 | 36294897 | 36293477 | ID=MS.gene81504.t1;Parent=MS.gene81504 |
chr2.1 | exon | 36294479 | 36294897 | 36294479 | ID=MS.gene81504.t1.exon1;Parent=MS.gene81504.t1 |
chr2.1 | CDS | 36294479 | 36294897 | 36294479 | ID=cds.MS.gene81504.t1;Parent=MS.gene81504.t1 |
chr2.1 | exon | 36294074 | 36294387 | 36294074 | ID=MS.gene81504.t1.exon2;Parent=MS.gene81504.t1 |
chr2.1 | CDS | 36294074 | 36294387 | 36294074 | ID=cds.MS.gene81504.t1;Parent=MS.gene81504.t1 |
chr2.1 | exon | 36293909 | 36293973 | 36293909 | ID=MS.gene81504.t1.exon3;Parent=MS.gene81504.t1 |
chr2.1 | CDS | 36293909 | 36293973 | 36293909 | ID=cds.MS.gene81504.t1;Parent=MS.gene81504.t1 |
chr2.1 | exon | 36293477 | 36293773 | 36293477 | ID=MS.gene81504.t1.exon4;Parent=MS.gene81504.t1 |
chr2.1 | CDS | 36293477 | 36293773 | 36293477 | ID=cds.MS.gene81504.t1;Parent=MS.gene81504.t1 |
Gene Sequence |
Protein sequence |