Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065183.t1 | XP_013464730.1 | 93.6 | 389 | 25 | 0 | 1 | 389 | 1 | 389 | 5.60E-197 | 696.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065183.t1 | Q84WQ5 | 49.4 | 399 | 179 | 10 | 1 | 387 | 1 | 388 | 2.7e-91 | 337.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065183.t1 | A0A072VKT6 | 93.6 | 389 | 25 | 0 | 1 | 389 | 1 | 389 | 4.1e-197 | 696.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene065183 | -0.831169 | 1.94E-55 | -1.69E-46 |
| MS.gene049180 | MS.gene065183 | 0.81698 | 4.18E-52 | -1.69E-46 |
| MS.gene049633 | MS.gene065183 | -0.809938 | 1.48E-50 | -1.69E-46 |
| MS.gene049865 | MS.gene065183 | -0.81196 | 5.39E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene065183 | -0.874416 | 6.87E-68 | -1.69E-46 |
| MS.gene050323 | MS.gene065183 | -0.804104 | 2.54E-49 | -1.69E-46 |
| MS.gene050496 | MS.gene065183 | -0.863146 | 3.07E-64 | -1.69E-46 |
| MS.gene050504 | MS.gene065183 | -0.815526 | 8.84E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene065183 | -0.857368 | 1.71E-62 | -1.69E-46 |
| MS.gene050612 | MS.gene065183 | -0.802724 | 4.90E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene065183 | -0.824808 | 6.60E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene065183 | -0.808974 | 2.38E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene065183 | -0.804817 | 1.80E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene065183 | -0.833217 | 6.05E-56 | -1.69E-46 |
| MS.gene050986 | MS.gene065183 | -0.804274 | 2.34E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene065183 | -0.822934 | 1.82E-53 | -1.69E-46 |
| MS.gene052486 | MS.gene065183 | -0.829865 | 4.05E-55 | -1.69E-46 |
| MS.gene052494 | MS.gene065183 | 0.801437 | 9.01E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene065183 | -0.814574 | 1.44E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene065183 | -0.822668 | 2.09E-53 | -1.69E-46 |
| MS.gene052825 | MS.gene065183 | -0.817425 | 3.32E-52 | -1.69E-46 |
| MS.gene053083 | MS.gene065183 | 0.808767 | 2.63E-50 | -1.69E-46 |
| MS.gene053097 | MS.gene065183 | 0.833062 | 6.62E-56 | -1.69E-46 |
| MS.gene053203 | MS.gene065183 | -0.826545 | 2.56E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene065183 | -0.805097 | 1.57E-49 | -1.69E-46 |
| MS.gene053480 | MS.gene065183 | -0.810081 | 1.38E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene065183 | -0.80746 | 5.00E-50 | -1.69E-46 |
| MS.gene054344 | MS.gene065183 | -0.821459 | 3.99E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene065183 | -0.857913 | 1.18E-62 | -1.69E-46 |
| MS.gene054954 | MS.gene065183 | -0.815355 | 9.65E-52 | -1.69E-46 |
| MS.gene055251 | MS.gene065183 | 0.833311 | 5.74E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene065183 | -0.810198 | 1.30E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene065183 | -0.804817 | 1.80E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene065183 | -0.814268 | 1.68E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene065183 | -0.806436 | 8.23E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene065183 | -0.867559 | 1.25E-65 | -1.69E-46 |
| MS.gene056266 | MS.gene065183 | -0.846654 | 1.90E-59 | -1.69E-46 |
| MS.gene056504 | MS.gene065183 | -0.85449 | 1.19E-61 | -1.69E-46 |
| MS.gene056510 | MS.gene065183 | -0.81271 | 3.70E-51 | -1.69E-46 |
| MS.gene056692 | MS.gene065183 | -0.804931 | 1.70E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene065183 | 0.809229 | 2.10E-50 | -1.69E-46 |
| MS.gene057100 | MS.gene065183 | 0.813302 | 2.74E-51 | -1.69E-46 |
| MS.gene058334 | MS.gene065183 | 0.839977 | 1.15E-57 | -1.69E-46 |
| MS.gene05837 | MS.gene065183 | -0.805901 | 1.07E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene065183 | -0.804128 | 2.51E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene065183 | -0.802158 | 6.41E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene065183 | -0.802464 | 5.54E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene065183 | -0.820407 | 6.97E-53 | -1.69E-46 |
| MS.gene059023 | MS.gene065183 | -0.841121 | 5.76E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene065183 | -0.807823 | 4.19E-50 | -1.69E-46 |
| MS.gene059837 | MS.gene065183 | -0.901678 | 2.10E-78 | -1.69E-46 |
| MS.gene059865 | MS.gene065183 | -0.830834 | 2.35E-55 | -1.69E-46 |
| MS.gene06000 | MS.gene065183 | -0.845061 | 5.14E-59 | -1.69E-46 |
| MS.gene060076 | MS.gene065183 | 0.814267 | 1.68E-51 | -1.69E-46 |
| MS.gene060593 | MS.gene065183 | 0.801505 | 8.73E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene065183 | 0.837106 | 6.32E-57 | -1.69E-46 |
| MS.gene060703 | MS.gene065183 | -0.817763 | 2.79E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene065183 | -0.820118 | 8.12E-53 | -1.69E-46 |
| MS.gene060778 | MS.gene065183 | -0.80232 | 5.93E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene065183 | -0.856096 | 4.05E-62 | -1.69E-46 |
| MS.gene060982 | MS.gene065183 | -0.856091 | 4.07E-62 | -1.69E-46 |
| MS.gene061044 | MS.gene065183 | 0.843282 | 1.54E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065183.t1 | MTR_2g079630 | 97.172 | 389 | 11 | 0 | 1 | 389 | 1 | 389 | 0.0 | 770 |
| MS.gene065183.t1 | MTR_2g079650 | 81.538 | 390 | 66 | 3 | 1 | 389 | 1 | 385 | 0.0 | 605 |
| MS.gene065183.t1 | MTR_2g013110 | 45.885 | 401 | 181 | 8 | 7 | 387 | 9 | 393 | 6.53e-113 | 335 |
| MS.gene065183.t1 | MTR_7g079680 | 28.972 | 428 | 223 | 15 | 1 | 379 | 1 | 396 | 9.08e-32 | 124 |
| MS.gene065183.t1 | MTR_7g079680 | 31.301 | 246 | 118 | 10 | 155 | 379 | 61 | 276 | 1.13e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065183.t1 | AT4G27460 | 51.378 | 399 | 171 | 11 | 1 | 387 | 1 | 388 | 1.39e-113 | 337 |
| MS.gene065183.t1 | AT5G53750 | 50.120 | 415 | 169 | 12 | 1 | 387 | 1 | 405 | 9.59e-110 | 328 |
| MS.gene065183.t1 | AT1G65320 | 27.021 | 433 | 228 | 14 | 1 | 379 | 1 | 399 | 1.58e-29 | 119 |
Find 97 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGATGATACAGCTTAT+TGG | 0.263301 | 2.4:+18020887 | MS.gene065183:intron |
| AAGGTTGAAGGAAAAGAATT+TGG | 0.316598 | 2.4:+18021400 | MS.gene065183:CDS |
| CGATGACCTTGCATACTTTC+CGG | 0.330667 | 2.4:-18021525 | None:intergenic |
| GTGTCCTTCCAAAGCTCTTA+AGG | 0.331448 | 2.4:+18019903 | MS.gene065183:CDS |
| GCGAAAGTTTCGTGAGTGTT+TGG | 0.336872 | 2.4:+18019785 | MS.gene065183:CDS |
| CACAGCAATCAAAGAGCTCT+TGG | 0.367612 | 2.4:-18021597 | None:intergenic |
| AATTGAAGCCTTAAGAGCTT+TGG | 0.367682 | 2.4:-18019911 | None:intergenic |
| AACTGTGACCACTCTGAATT+CGG | 0.379187 | 2.4:+18019808 | MS.gene065183:CDS |
| GCCCTCCAGAGGATCTAGTT+AGG | 0.395318 | 2.4:+18021366 | MS.gene065183:CDS |
| CTCTACATTCCTCACATACT+TGG | 0.414784 | 2.4:-18021558 | None:intergenic |
| GAGGATGATTGGAGCTTAGT+TGG | 0.417326 | 2.4:+18021665 | MS.gene065183:CDS |
| TGTGGGTTATTGAGGATGAT+TGG | 0.421312 | 2.4:+18021654 | MS.gene065183:CDS |
| GCCATCACAACTTTGTCTGC+AGG | 0.430978 | 2.4:+18021314 | MS.gene065183:CDS |
| CTTCAACAGCAGAAGACGCC+TGG | 0.435308 | 2.4:-18021175 | None:intergenic |
| ATGTGTTGGGAAAATTTGTA+TGG | 0.452481 | 2.4:+18019840 | MS.gene065183:CDS |
| GATGTGATCAGGTTCTTACT+TGG | 0.466946 | 2.4:+18021062 | MS.gene065183:CDS |
| TAATAGAGTGAATTACTTGT+GGG | 0.472091 | 2.4:+18021637 | MS.gene065183:CDS |
| TCGGTCAATGTCAATGTGTT+GGG | 0.473950 | 2.4:+18019827 | MS.gene065183:CDS |
| CTCCATTGATTACTCTTCCC+AGG | 0.476252 | 2.4:+18021157 | MS.gene065183:CDS |
| GGTTGTAAAGGCAAGGTTGA+AGG | 0.477069 | 2.4:+18021388 | MS.gene065183:CDS |
| ATCAACCTTATTCAAAACAT+TGG | 0.479230 | 2.4:-18019935 | None:intergenic |
| GCCATTGATCTCATACTTGA+GGG | 0.480304 | 2.4:+18020912 | MS.gene065183:CDS |
| GAATTACTTGTGGGTTATTG+AGG | 0.486011 | 2.4:+18021646 | MS.gene065183:CDS |
| AACTTTCGCCGCCGGAGCTA+CGG | 0.487382 | 2.4:-18019771 | None:intergenic |
| AGGTTCTTACTTGGTTCCAT+TGG | 0.493319 | 2.4:+18021071 | MS.gene065183:CDS |
| GCGAGGAGTTTGACACGGTC+CGG | 0.494146 | 2.4:+18021506 | MS.gene065183:CDS |
| ATTGAAGTCCTCCGTAGCTC+CGG | 0.495539 | 2.4:+18019760 | MS.gene065183:CDS |
| TTCATCTGATGAGGACAGTC+CGG | 0.496147 | 2.4:+18021484 | MS.gene065183:CDS |
| CCCTCCAGAGGATCTAGTTA+GGG | 0.498391 | 2.4:+18021367 | MS.gene065183:CDS |
| AGACGATCGATGGATTGTGC+AGG | 0.510025 | 2.4:-18021110 | None:intergenic |
| GTTGCAATTGTCGACGGTGA+TGG | 0.521762 | 2.4:+18021230 | MS.gene065183:CDS |
| GGATCTAGTTAGGGTTGTAA+AGG | 0.524022 | 2.4:+18021376 | MS.gene065183:CDS |
| CCATCACAACTTTGTCTGCA+GGG | 0.524200 | 2.4:+18021315 | MS.gene065183:CDS |
| ACAGCAATCAAAGAGCTCTT+GGG | 0.525945 | 2.4:-18021596 | None:intergenic |
| AATAAATGGTACCTAGATGA+AGG | 0.528220 | 2.4:-18019979 | None:intergenic |
| TTGTGTGAGGGACTTTGAGA+TGG | 0.531894 | 2.4:-18021198 | None:intergenic |
| CCCCTCAAGTATGAGATCAA+TGG | 0.534194 | 2.4:-18020913 | None:intergenic |
| CTAATAGAGTGAATTACTTG+TGG | 0.535417 | 2.4:+18021636 | MS.gene065183:CDS |
| ACAACCCTAACTAGATCCTC+TGG | 0.535562 | 2.4:-18021371 | None:intergenic |
| TTCATCTAGAACCTTCATCT+AGG | 0.539213 | 2.4:+18019968 | MS.gene065183:CDS |
| TGCCATTGATCTCATACTTG+AGG | 0.539564 | 2.4:+18020911 | MS.gene065183:CDS |
| TTGCAATTGTCGACGGTGAT+GGG | 0.542443 | 2.4:+18021231 | MS.gene065183:CDS |
| GACGGTGATGGGACATTCAT+CGG | 0.542508 | 2.4:+18021242 | MS.gene065183:CDS |
| TTCGGTCAATGTCAATGTGT+TGG | 0.546600 | 2.4:+18019826 | MS.gene065183:CDS |
| CCCTGCAGACAAAGTTGTGA+TGG | 0.549793 | 2.4:-18021315 | None:intergenic |
| CATCACAACTTTGTCTGCAG+GGG | 0.550293 | 2.4:+18021316 | MS.gene065183:CDS |
| TAACACAAGAGGATGTGATC+AGG | 0.550433 | 2.4:+18021051 | MS.gene065183:CDS |
| GATAATATTGAGACGATCGA+TGG | 0.553025 | 2.4:-18021120 | None:intergenic |
| GAGTGCACTGAAGCGGCCAA+TGG | 0.559548 | 2.4:-18021087 | None:intergenic |
| ACAACGGTGTTGAGTTCTGT+TGG | 0.560590 | 2.4:+18021027 | MS.gene065183:CDS |
| CGCCTGGGAAGAGTAATCAA+TGG | 0.562410 | 2.4:-18021159 | None:intergenic |
| ATCACAACATGCAAGTGTGA+AGG | 0.567692 | 2.4:-18021276 | None:intergenic |
| TAGTTAGGGTTGTAAAGGCA+AGG | 0.569328 | 2.4:+18021381 | MS.gene065183:CDS |
| GAGTTATCTGATCTCTGTCT+CGG | 0.571057 | 2.4:+18019688 | MS.gene065183:CDS |
| CAACAGAAGTTTGTTGTGTG+AGG | 0.577183 | 2.4:-18021211 | None:intergenic |
| ATCCTCCTCTTCATCTGATG+AGG | 0.578040 | 2.4:+18021475 | MS.gene065183:CDS |
| GACCGTGTCAAACTCCTCGC+CGG | 0.578167 | 2.4:-18021503 | None:intergenic |
| TGCAAGGTCATCGAGCTACT+CGG | 0.582724 | 2.4:+18021535 | MS.gene065183:CDS |
| ATCACAACTTTGTCTGCAGG+GGG | 0.584206 | 2.4:+18021317 | MS.gene065183:CDS |
| TTTCGCCGCCGGAGCTACGG+AGG | 0.585312 | 2.4:-18019768 | None:intergenic |
| TCGTCTCAATATTATCAGCT+CGG | 0.585428 | 2.4:+18021127 | MS.gene065183:CDS |
| GTTCTGTTGGTTAACACAAG+AGG | 0.588395 | 2.4:+18021040 | MS.gene065183:CDS |
| TTCAACAGCAGAAGACGCCT+GGG | 0.592455 | 2.4:-18021174 | None:intergenic |
| GTGCAGGGAGTGCACTGAAG+CGG | 0.593463 | 2.4:-18021094 | None:intergenic |
| GACTTCAATTGCCTCAGCGA+CGG | 0.595693 | 2.4:-18019746 | None:intergenic |
| GTCCTCATCAGATGAAGAGG+AGG | 0.596841 | 2.4:-18021477 | None:intergenic |
| TCACAACATGCAAGTGTGAA+GGG | 0.596883 | 2.4:-18021275 | None:intergenic |
| ACTGTCCTCATCAGATGAAG+AGG | 0.604105 | 2.4:-18021480 | None:intergenic |
| GACGATCGATGGATTGTGCA+GGG | 0.604203 | 2.4:-18021109 | None:intergenic |
| GAAGTCCTCCGTAGCTCCGG+CGG | 0.605794 | 2.4:+18019763 | MS.gene065183:CDS |
| TGCAGACAAAGTTGTGATGG+CGG | 0.609998 | 2.4:-18021312 | None:intergenic |
| AACAGAAGTTTGTTGTGTGA+GGG | 0.614439 | 2.4:-18021210 | None:intergenic |
| CACGGTCCGGAAAGTATGCA+AGG | 0.614793 | 2.4:+18021519 | MS.gene065183:CDS |
| GTTGAAGTCGCTTTCAACGT+CGG | 0.615025 | 2.4:+18019720 | MS.gene065183:CDS |
| AGGGCGACCACAGTCAATGT+AGG | 0.615124 | 2.4:-18021348 | None:intergenic |
| GTTGAAAGCGACTTCAACGG+CGG | 0.616613 | 2.4:-18019715 | None:intergenic |
| GAAGCCTTAAGAGCTTTGGA+AGG | 0.616878 | 2.4:-18019907 | None:intergenic |
| TGACTGTGGTCGCCCTCCAG+AGG | 0.619657 | 2.4:+18021355 | MS.gene065183:CDS |
| ATGTTGTGATGAGACGGTTG+CGG | 0.621625 | 2.4:+18021289 | MS.gene065183:CDS |
| ACTTCTGTTGCAATTGTCGA+CGG | 0.622534 | 2.4:+18021224 | MS.gene065183:CDS |
| ACTCACGAAACTTTCGCCGC+CGG | 0.623945 | 2.4:-18019779 | None:intergenic |
| AACAGAACTCAACACCGTTG+TGG | 0.629524 | 2.4:-18021025 | None:intergenic |
| GACGTTGAAAGCGACTTCAA+CGG | 0.641361 | 2.4:-18019718 | None:intergenic |
| ACCCTAACTAGATCCTCTGG+AGG | 0.646675 | 2.4:-18021368 | None:intergenic |
| AGAGGAGGATGACATATCAC+CGG | 0.649223 | 2.4:-18021462 | None:intergenic |
| GCTACTCGGCCAAGTATGTG+AGG | 0.650705 | 2.4:+18021549 | MS.gene065183:CDS |
| CATTGATCTCATACTTGAGG+GGG | 0.653452 | 2.4:+18020914 | MS.gene065183:CDS |
| CAAGTATGTGAGGAATGTAG+AGG | 0.658949 | 2.4:+18021559 | MS.gene065183:CDS |
| ACTTGCATGTTGTGATGAGA+CGG | 0.665678 | 2.4:+18021283 | MS.gene065183:CDS |
| GACATTGACCGAATTCAGAG+TGG | 0.672174 | 2.4:-18019816 | None:intergenic |
| AACGTCGGCTACCGTCGCTG+AGG | 0.672712 | 2.4:+18019735 | MS.gene065183:CDS |
| CCATTGATCTCATACTTGAG+GGG | 0.673886 | 2.4:+18020913 | MS.gene065183:CDS |
| CCCTAACTAGATCCTCTGGA+GGG | 0.680964 | 2.4:-18021367 | None:intergenic |
| TTGATGGCCTACATTGACTG+TGG | 0.683351 | 2.4:+18021341 | MS.gene065183:CDS |
| GTCCGGCGAGGAGTTTGACA+CGG | 0.708960 | 2.4:+18021501 | MS.gene065183:CDS |
| TTAACAATCAACAGCCACAA+CGG | 0.709558 | 2.4:+18021011 | MS.gene065183:CDS |
| CTGATGAGGACAGTCCGGCG+AGG | 0.730013 | 2.4:+18021489 | MS.gene065183:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATGAATAAACAAATAAA+TGG | - | chr2.4:18019996-18020015 | None:intergenic | 10.0% |
| !! | TATAATCAATATAATCAATT+TGG | - | chr2.4:18020175-18020194 | None:intergenic | 10.0% |
| !!! | AAACTTGAAATTGTATATTT+TGG | + | chr2.4:18020710-18020729 | MS.gene065183:intron | 15.0% |
| !!! | AACTTGAAATTGTATATTTT+GGG | + | chr2.4:18020711-18020730 | MS.gene065183:intron | 15.0% |
| !!! | ATTGATTATATTGATTATAG+AGG | + | chr2.4:18020176-18020195 | MS.gene065183:intron | 15.0% |
| !!! | AATTTCCAATGTTTTGAATA+AGG | + | chr2.4:18019930-18019949 | MS.gene065183:CDS | 20.0% |
| !!! | ACTTGAAATTGTATATTTTG+GGG | + | chr2.4:18020712-18020731 | MS.gene065183:intron | 20.0% |
| !!! | ATATCTGATTTTGACATATT+TGG | + | chr2.4:18020271-18020290 | MS.gene065183:intron | 20.0% |
| !!! | ATTTGATATTGTTGTAGTTT+TGG | + | chr2.4:18020521-18020540 | MS.gene065183:intron | 20.0% |
| !!! | CTGAATTTGAAATTTGATTT+GGG | + | chr2.4:18020496-18020515 | MS.gene065183:intron | 20.0% |
| !!! | TACTTTTTCTAATATCTTGA+AGG | + | chr2.4:18021694-18021713 | MS.gene065183:CDS | 20.0% |
| !!! | TCTGAATTTGAAATTTGATT+TGG | + | chr2.4:18020495-18020514 | MS.gene065183:intron | 20.0% |
| !!! | TTTGATATTGTTGTAGTTTT+GGG | + | chr2.4:18020522-18020541 | MS.gene065183:intron | 20.0% |
| ! | ATCAACCTTATTCAAAACAT+TGG | - | chr2.4:18019938-18019957 | None:intergenic | 25.0% |
| ! | TAATAGAGTGAATTACTTGT+GGG | + | chr2.4:18021637-18021656 | MS.gene065183:CDS | 25.0% |
| ! | TCTACAATTTAGTGTATGTT+TGG | - | chr2.4:18020442-18020461 | None:intergenic | 25.0% |
| !! | AAAGATTTTGTTCTTTGCAA+AGG | - | chr2.4:18019882-18019901 | None:intergenic | 25.0% |
| !! | AAGGTAAAATGATTTGTGTT+TGG | - | chr2.4:18020363-18020382 | None:intergenic | 25.0% |
| !! | AATTTGATGATACAGCTTAT+TGG | + | chr2.4:18020887-18020906 | MS.gene065183:intron | 25.0% |
| !!! | AATGTTTTGAATAAGGTTGA+TGG | + | chr2.4:18019937-18019956 | MS.gene065183:CDS | 25.0% |
| !!! | CTTGAAATTGTATATTTTGG+GGG | + | chr2.4:18020713-18020732 | MS.gene065183:intron | 25.0% |
| !!! | TGTCGTTGATTCAATTAAAT+AGG | + | chr2.4:18020149-18020168 | MS.gene065183:intron | 25.0% |
| !!! | TTGAAATTGTATATTTTGGG+GGG | + | chr2.4:18020714-18020733 | MS.gene065183:intron | 25.0% |
| !!! | TTGATATTGTTGTAGTTTTG+GGG | + | chr2.4:18020523-18020542 | MS.gene065183:intron | 25.0% |
| AAAACTCAGACTCAAAATCA+AGG | - | chr2.4:18020595-18020614 | None:intergenic | 30.0% | |
| AAACTCAGACTCAAAATCAA+GGG | - | chr2.4:18020594-18020613 | None:intergenic | 30.0% | |
| AAGGTTGAAGGAAAAGAATT+TGG | + | chr2.4:18021400-18021419 | MS.gene065183:CDS | 30.0% | |
| AATAAATGGTACCTAGATGA+AGG | - | chr2.4:18019982-18020001 | None:intergenic | 30.0% | |
| ATGTGTTGGGAAAATTTGTA+TGG | + | chr2.4:18019840-18019859 | MS.gene065183:CDS | 30.0% | |
| ATTTCGCAAACAAAAAAAGG+TGG | + | chr2.4:18020957-18020976 | MS.gene065183:CDS | 30.0% | |
| CATCAAATTAACAAGAAGCA+AGG | - | chr2.4:18020876-18020895 | None:intergenic | 30.0% | |
| CCAATTTCGCAAACAAAAAA+AGG | + | chr2.4:18020954-18020973 | MS.gene065183:CDS | 30.0% | |
| CTAATAGAGTGAATTACTTG+TGG | + | chr2.4:18021636-18021655 | MS.gene065183:CDS | 30.0% | |
| TCACAGTACGTAAATAATCT+TGG | + | chr2.4:18020050-18020069 | MS.gene065183:intron | 30.0% | |
| TTTGTGTTTGGATACATTGA+TGG | - | chr2.4:18020351-18020370 | None:intergenic | 30.0% | |
| ! | GTAGAATTGATTCTATTCGA+AGG | + | chr2.4:18020235-18020254 | MS.gene065183:intron | 30.0% |
| !!! | CCTTTTTTTGTTTGCGAAAT+TGG | - | chr2.4:18020957-18020976 | None:intergenic | 30.0% |
| !!! | TGATATTGTTGTAGTTTTGG+GGG | + | chr2.4:18020524-18020543 | MS.gene065183:intron | 30.0% |
| !!! | TTAGTGTATGTTTGGTTTTG+AGG | - | chr2.4:18020434-18020453 | None:intergenic | 30.0% |
| AATTGAAGCCTTAAGAGCTT+TGG | - | chr2.4:18019914-18019933 | None:intergenic | 35.0% | |
| CAAAAAAAGGTGGTCTTTCA+AGG | + | chr2.4:18020967-18020986 | MS.gene065183:CDS | 35.0% | |
| CCTTTCCATGTCAATCAATT+CGG | - | chr2.4:18020753-18020772 | None:intergenic | 35.0% | |
| CGAATTGATTGACATGGAAA+GGG | + | chr2.4:18020751-18020770 | MS.gene065183:intron | 35.0% | |
| GAATTGATTGACATGGAAAG+GGG | + | chr2.4:18020752-18020771 | MS.gene065183:intron | 35.0% | |
| GATAATATTGAGACGATCGA+TGG | - | chr2.4:18021123-18021142 | None:intergenic | 35.0% | |
| TCGTCTCAATATTATCAGCT+CGG | + | chr2.4:18021127-18021146 | MS.gene065183:CDS | 35.0% | |
| TCTGTCTAAAAGTGAGTAGA+AGG | - | chr2.4:18020382-18020401 | None:intergenic | 35.0% | |
| TTAACAATCAACAGCCACAA+CGG | + | chr2.4:18021011-18021030 | MS.gene065183:CDS | 35.0% | |
| ! | GAATTACTTGTGGGTTATTG+AGG | + | chr2.4:18021646-18021665 | MS.gene065183:CDS | 35.0% |
| ! | TTCATCTAGAACCTTCATCT+AGG | + | chr2.4:18019968-18019987 | MS.gene065183:CDS | 35.0% |
| !! | AACAGAAGTTTGTTGTGTGA+GGG | - | chr2.4:18021213-18021232 | None:intergenic | 35.0% |
| !! | ATATTTTGGGGGGAAAGTTT+TGG | + | chr2.4:18020724-18020743 | MS.gene065183:intron | 35.0% |
| AACTGTGACCACTCTGAATT+CGG | + | chr2.4:18019808-18019827 | MS.gene065183:CDS | 40.0% | |
| ACAGCAATCAAAGAGCTCTT+GGG | - | chr2.4:18021599-18021618 | None:intergenic | 40.0% | |
| ACTTCTGTTGCAATTGTCGA+CGG | + | chr2.4:18021224-18021243 | MS.gene065183:CDS | 40.0% | |
| ACTTGCATGTTGTGATGAGA+CGG | + | chr2.4:18021283-18021302 | MS.gene065183:CDS | 40.0% | |
| AGGTTCTTACTTGGTTCCAT+TGG | + | chr2.4:18021071-18021090 | MS.gene065183:CDS | 40.0% | |
| ATCACAACATGCAAGTGTGA+AGG | - | chr2.4:18021279-18021298 | None:intergenic | 40.0% | |
| CAAGTATGTGAGGAATGTAG+AGG | + | chr2.4:18021559-18021578 | MS.gene065183:CDS | 40.0% | |
| CATTGATCTCATACTTGAGG+GGG | + | chr2.4:18020914-18020933 | MS.gene065183:CDS | 40.0% | |
| CCATTGATCTCATACTTGAG+GGG | + | chr2.4:18020913-18020932 | MS.gene065183:CDS | 40.0% | |
| CCGAATTGATTGACATGGAA+AGG | + | chr2.4:18020750-18020769 | MS.gene065183:intron | 40.0% | |
| CTCTACATTCCTCACATACT+TGG | - | chr2.4:18021561-18021580 | None:intergenic | 40.0% | |
| GAGTTATCTGATCTCTGTCT+CGG | + | chr2.4:18019688-18019707 | MS.gene065183:CDS | 40.0% | |
| GATGTGATCAGGTTCTTACT+TGG | + | chr2.4:18021062-18021081 | MS.gene065183:CDS | 40.0% | |
| GCCATTGATCTCATACTTGA+GGG | + | chr2.4:18020912-18020931 | MS.gene065183:CDS | 40.0% | |
| GGATCTAGTTAGGGTTGTAA+AGG | + | chr2.4:18021376-18021395 | MS.gene065183:CDS | 40.0% | |
| TAACACAAGAGGATGTGATC+AGG | + | chr2.4:18021051-18021070 | MS.gene065183:CDS | 40.0% | |
| TAGTTAGGGTTGTAAAGGCA+AGG | + | chr2.4:18021381-18021400 | MS.gene065183:CDS | 40.0% | |
| TCACAACATGCAAGTGTGAA+GGG | - | chr2.4:18021278-18021297 | None:intergenic | 40.0% | |
| TCGGTCAATGTCAATGTGTT+GGG | + | chr2.4:18019827-18019846 | MS.gene065183:CDS | 40.0% | |
| TGCCATTGATCTCATACTTG+AGG | + | chr2.4:18020911-18020930 | MS.gene065183:CDS | 40.0% | |
| TTCGGTCAATGTCAATGTGT+TGG | + | chr2.4:18019826-18019845 | MS.gene065183:CDS | 40.0% | |
| ! | GTTCTGTTGGTTAACACAAG+AGG | + | chr2.4:18021040-18021059 | MS.gene065183:CDS | 40.0% |
| ! | TGTGGGTTATTGAGGATGAT+TGG | + | chr2.4:18021654-18021673 | MS.gene065183:CDS | 40.0% |
| !! | CAACAGAAGTTTGTTGTGTG+AGG | - | chr2.4:18021214-18021233 | None:intergenic | 40.0% |
| !!! | ACGCTTTTGACTTCTTTGAC+CGG | + | chr2.4:18021443-18021462 | MS.gene065183:CDS | 40.0% |
| AACAGAACTCAACACCGTTG+TGG | - | chr2.4:18021028-18021047 | None:intergenic | 45.0% | |
| ACAACCCTAACTAGATCCTC+TGG | - | chr2.4:18021374-18021393 | None:intergenic | 45.0% | |
| ACTGTCCTCATCAGATGAAG+AGG | - | chr2.4:18021483-18021502 | None:intergenic | 45.0% | |
| AGAGGAGGATGACATATCAC+CGG | - | chr2.4:18021465-18021484 | None:intergenic | 45.0% | |
| ATCACAACTTTGTCTGCAGG+GGG | + | chr2.4:18021317-18021336 | MS.gene065183:CDS | 45.0% | |
| ATCCTCCTCTTCATCTGATG+AGG | + | chr2.4:18021475-18021494 | MS.gene065183:CDS | 45.0% | |
| ATGTTGTGATGAGACGGTTG+CGG | + | chr2.4:18021289-18021308 | MS.gene065183:CDS | 45.0% | |
| CACAGCAATCAAAGAGCTCT+TGG | - | chr2.4:18021600-18021619 | None:intergenic | 45.0% | |
| CATCACAACTTTGTCTGCAG+GGG | + | chr2.4:18021316-18021335 | MS.gene065183:CDS | 45.0% | |
| CCATCACAACTTTGTCTGCA+GGG | + | chr2.4:18021315-18021334 | MS.gene065183:CDS | 45.0% | |
| CCCCTCAAGTATGAGATCAA+TGG | - | chr2.4:18020916-18020935 | None:intergenic | 45.0% | |
| CGATGACCTTGCATACTTTC+CGG | - | chr2.4:18021528-18021547 | None:intergenic | 45.0% | |
| GACATTGACCGAATTCAGAG+TGG | - | chr2.4:18019819-18019838 | None:intergenic | 45.0% | |
| GACGTTGAAAGCGACTTCAA+CGG | - | chr2.4:18019721-18019740 | None:intergenic | 45.0% | |
| GAGGATGATTGGAGCTTAGT+TGG | + | chr2.4:18021665-18021684 | MS.gene065183:CDS | 45.0% | |
| GCGAAAGTTTCGTGAGTGTT+TGG | + | chr2.4:18019785-18019804 | MS.gene065183:CDS | 45.0% | |
| GGAGTCCGAATTGATTGACA+TGG | + | chr2.4:18020745-18020764 | MS.gene065183:intron | 45.0% | |
| GGTTGTAAAGGCAAGGTTGA+AGG | + | chr2.4:18021388-18021407 | MS.gene065183:CDS | 45.0% | |
| GTGTCCTTCCAAAGCTCTTA+AGG | + | chr2.4:18019903-18019922 | MS.gene065183:CDS | 45.0% | |
| TGATTGACATGGAAAGGGGA+CGG | + | chr2.4:18020756-18020775 | MS.gene065183:intron | 45.0% | |
| TGCAGACAAAGTTGTGATGG+CGG | - | chr2.4:18021315-18021334 | None:intergenic | 45.0% | |
| TTCATCTGATGAGGACAGTC+CGG | + | chr2.4:18021484-18021503 | MS.gene065183:CDS | 45.0% | |
| TTGCAATTGTCGACGGTGAT+GGG | + | chr2.4:18021231-18021250 | MS.gene065183:CDS | 45.0% | |
| ! | ACAACGGTGTTGAGTTCTGT+TGG | + | chr2.4:18021027-18021046 | MS.gene065183:CDS | 45.0% |
| ! | CTCCATTGATTACTCTTCCC+AGG | + | chr2.4:18021157-18021176 | MS.gene065183:CDS | 45.0% |
| ! | GTTGAAGTCGCTTTCAACGT+CGG | + | chr2.4:18019720-18019739 | MS.gene065183:CDS | 45.0% |
| ! | TTGATGGCCTACATTGACTG+TGG | + | chr2.4:18021341-18021360 | MS.gene065183:CDS | 45.0% |
| ! | TTGTGTGAGGGACTTTGAGA+TGG | - | chr2.4:18021201-18021220 | None:intergenic | 45.0% |
| !! | GAAGCCTTAAGAGCTTTGGA+AGG | - | chr2.4:18019910-18019929 | None:intergenic | 45.0% |
| ACCCTAACTAGATCCTCTGG+AGG | - | chr2.4:18021371-18021390 | None:intergenic | 50.0% | |
| ATTGAAGTCCTCCGTAGCTC+CGG | + | chr2.4:18019760-18019779 | MS.gene065183:CDS | 50.0% | |
| CCCTAACTAGATCCTCTGGA+GGG | - | chr2.4:18021370-18021389 | None:intergenic | 50.0% | |
| CCCTCCAGAGGATCTAGTTA+GGG | + | chr2.4:18021367-18021386 | MS.gene065183:CDS | 50.0% | |
| CCCTGCAGACAAAGTTGTGA+TGG | - | chr2.4:18021318-18021337 | None:intergenic | 50.0% | |
| CGCCTGGGAAGAGTAATCAA+TGG | - | chr2.4:18021162-18021181 | None:intergenic | 50.0% | |
| GACTTCAATTGCCTCAGCGA+CGG | - | chr2.4:18019749-18019768 | None:intergenic | 50.0% | |
| GCCATCACAACTTTGTCTGC+AGG | + | chr2.4:18021314-18021333 | MS.gene065183:CDS | 50.0% | |
| GTCCTCATCAGATGAAGAGG+AGG | - | chr2.4:18021480-18021499 | None:intergenic | 50.0% | |
| GTTGAAAGCGACTTCAACGG+CGG | - | chr2.4:18019718-18019737 | None:intergenic | 50.0% | |
| GTTGCAATTGTCGACGGTGA+TGG | + | chr2.4:18021230-18021249 | MS.gene065183:CDS | 50.0% | |
| TGCAAGGTCATCGAGCTACT+CGG | + | chr2.4:18021535-18021554 | MS.gene065183:CDS | 50.0% | |
| TTCAACAGCAGAAGACGCCT+GGG | - | chr2.4:18021177-18021196 | None:intergenic | 50.0% | |
| !! | AGACGATCGATGGATTGTGC+AGG | - | chr2.4:18021113-18021132 | None:intergenic | 50.0% |
| !! | GACGATCGATGGATTGTGCA+GGG | - | chr2.4:18021112-18021131 | None:intergenic | 50.0% |
| !! | GACGGTGATGGGACATTCAT+CGG | + | chr2.4:18021242-18021261 | MS.gene065183:CDS | 50.0% |
| ACTCACGAAACTTTCGCCGC+CGG | - | chr2.4:18019782-18019801 | None:intergenic | 55.0% | |
| AGGGCGACCACAGTCAATGT+AGG | - | chr2.4:18021351-18021370 | None:intergenic | 55.0% | |
| CTTCAACAGCAGAAGACGCC+TGG | - | chr2.4:18021178-18021197 | None:intergenic | 55.0% | |
| GCCCTCCAGAGGATCTAGTT+AGG | + | chr2.4:18021366-18021385 | MS.gene065183:CDS | 55.0% | |
| GCTACTCGGCCAAGTATGTG+AGG | + | chr2.4:18021549-18021568 | MS.gene065183:CDS | 55.0% | |
| TTTGTCTGCAGGGGGCTTGA+TGG | + | chr2.4:18021325-18021344 | MS.gene065183:CDS | 55.0% | |
| ! | CACGGTCCGGAAAGTATGCA+AGG | + | chr2.4:18021519-18021538 | MS.gene065183:CDS | 55.0% |
| ! | TGAGGGGGCACAGAATCTTG+TGG | + | chr2.4:18020929-18020948 | MS.gene065183:CDS | 55.0% |
| AACTTTCGCCGCCGGAGCTA+CGG | - | chr2.4:18019774-18019793 | None:intergenic | 60.0% | |
| GACCGTGTCAAACTCCTCGC+CGG | - | chr2.4:18021506-18021525 | None:intergenic | 60.0% | |
| GAGTGCACTGAAGCGGCCAA+TGG | - | chr2.4:18021090-18021109 | None:intergenic | 60.0% | |
| GCGAGGAGTTTGACACGGTC+CGG | + | chr2.4:18021506-18021525 | MS.gene065183:CDS | 60.0% | |
| GTCCGGCGAGGAGTTTGACA+CGG | + | chr2.4:18021501-18021520 | MS.gene065183:CDS | 60.0% | |
| ! | GTGCAGGGAGTGCACTGAAG+CGG | - | chr2.4:18021097-18021116 | None:intergenic | 60.0% |
| CTGATGAGGACAGTCCGGCG+AGG | + | chr2.4:18021489-18021508 | MS.gene065183:CDS | 65.0% | |
| GAAGTCCTCCGTAGCTCCGG+CGG | + | chr2.4:18019763-18019782 | MS.gene065183:CDS | 65.0% | |
| TGACTGTGGTCGCCCTCCAG+AGG | + | chr2.4:18021355-18021374 | MS.gene065183:CDS | 65.0% | |
| ! | AACGTCGGCTACCGTCGCTG+AGG | + | chr2.4:18019735-18019754 | MS.gene065183:CDS | 65.0% |
| TTTCGCCGCCGGAGCTACGG+AGG | - | chr2.4:18019771-18019790 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 18019664 | 18021745 | 18019664 | ID=MS.gene065183 |
| chr2.4 | mRNA | 18019664 | 18021745 | 18019664 | ID=MS.gene065183.t1;Parent=MS.gene065183 |
| chr2.4 | exon | 18019664 | 18019989 | 18019664 | ID=MS.gene065183.t1.exon1;Parent=MS.gene065183.t1 |
| chr2.4 | CDS | 18019664 | 18019989 | 18019664 | ID=cds.MS.gene065183.t1;Parent=MS.gene065183.t1 |
| chr2.4 | exon | 18020902 | 18021745 | 18020902 | ID=MS.gene065183.t1.exon2;Parent=MS.gene065183.t1 |
| chr2.4 | CDS | 18020902 | 18021745 | 18020902 | ID=cds.MS.gene065183.t1;Parent=MS.gene065183.t1 |
| Gene Sequence |
| Protein sequence |
