AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75019

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75019.t1 MTR_1g108765 99.807 519 1 0 1 519 1 519 0.0 1052
MS.gene75019.t1 MTR_1g108770 91.379 522 42 3 1 519 1 522 0.0 927
MS.gene75019.t1 MTR_0002s0650 70.429 443 122 4 84 519 19 459 0.0 600
MS.gene75019.t1 MTR_7g021780 70.112 445 124 4 82 519 17 459 0.0 597
MS.gene75019.t1 MTR_4g451275 70.045 444 126 3 82 519 17 459 0.0 596
MS.gene75019.t1 MTR_3g035730 69.663 445 126 4 82 519 17 459 0.0 589
MS.gene75019.t1 MTR_7g033765 69.213 445 128 4 82 519 17 459 0.0 586
MS.gene75019.t1 MTR_7g033755 61.137 422 94 5 104 519 1 358 1.74e-165 478
MS.gene75019.t1 MTR_2g066870 61.264 364 127 5 159 519 29 381 1.28e-148 432
MS.gene75019.t1 MTR_7g117920 65.724 283 88 4 82 357 17 297 6.59e-111 332
MS.gene75019.t1 MTR_1829s0010 77.451 204 46 0 316 519 1 204 9.94e-111 332
MS.gene75019.t1 MTR_6g055020 64.286 266 86 4 82 340 17 280 1.51e-99 301
MS.gene75019.t1 MTR_2g066860 60.870 161 50 4 1 159 2 151 3.55e-51 173
MS.gene75019.t1 MTR_1g076100 68.750 80 25 0 373 452 5 84 1.48e-31 117
MS.gene75019.t1 MTR_4g010980 47.761 134 64 2 83 210 15 148 4.78e-30 115
MS.gene75019.t1 MTR_1g112870 28.715 397 247 11 121 493 60 444 5.88e-28 117
MS.gene75019.t1 MTR_7g081010 28.788 396 247 12 121 493 59 442 6.47e-28 117
MS.gene75019.t1 MTR_4g005410 28.012 332 213 9 180 493 203 526 1.77e-25 110
MS.gene75019.t1 MTR_5g090750 76.786 56 13 0 456 511 21 76 1.38e-22 92.0
MS.gene75019.t1 MTR_0212s0040 25.556 360 239 7 92 434 30 377 7.12e-20 94.0
MS.gene75019.t1 MTR_7g498250 86.957 69 8 1 1 69 1 68 2.46e-18 81.6
MS.gene75019.t1 MTR_0002s0550 24.866 374 252 10 147 506 86 444 4.34e-18 87.4
MS.gene75019.t1 MTR_7g498250 86.957 69 8 1 1 69 1 68 6.52e-18 79.3
MS.gene75019.t1 MTR_3g065340 40.146 137 50 7 2 138 3 107 6.36e-16 75.5
MS.gene75019.t1 MTR_3g099550 77.778 45 10 0 98 142 10 54 2.22e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75019.t1 AT5G08680 86.008 486 61 3 37 519 41 522 0.0 847
MS.gene75019.t1 AT5G08690 84.444 495 69 3 30 519 28 519 0.0 832
MS.gene75019.t1 AT5G08670 85.361 485 66 2 37 519 38 519 0.0 831
MS.gene75019.t1 ATCG00480 70.045 444 126 3 82 519 17 459 0.0 597
MS.gene75019.t1 AT1G20260 28.463 397 248 11 121 493 58 442 1.79e-28 119
MS.gene75019.t1 AT1G76030 28.788 396 247 11 121 493 58 441 4.87e-28 117
MS.gene75019.t1 AT4G38510 28.283 396 249 11 121 493 59 442 6.40e-28 117
MS.gene75019.t1 AT4G38510 28.283 396 249 11 121 493 59 442 6.40e-28 117
MS.gene75019.t1 AT4G38510 28.283 396 249 11 121 493 59 442 6.40e-28 117
MS.gene75019.t1 AT4G38510 28.283 396 249 11 121 493 59 442 6.40e-28 117
MS.gene75019.t1 AT4G38510 28.283 396 249 11 121 493 66 449 7.08e-28 117
MS.gene75019.t1 AT1G78900 29.276 304 190 8 208 493 229 525 2.54e-25 110
MS.gene75019.t1 AT1G78900 29.276 304 190 8 208 493 229 525 2.54e-25 110
MS.gene75019.t1 ATMG01190 26.073 303 203 4 144 434 84 377 2.52e-20 94.4
MS.gene75019.t1 AT2G07698 26.263 297 198 4 150 434 360 647 7.46e-20 94.0
MS.gene75019.t1 ATCG00120 24.648 426 269 13 98 506 54 444 9.28e-17 83.6

Find 144 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCTTTCTCCACTTATTT+TGG 0.083323 1.3:-74215348 MS.gene75019:CDS
CGTGCCCGTGTCGGTCTTAC+TGG 0.200311 1.3:-74216998 MS.gene75019:CDS
TCAAGATATCATTGCTATTC+TGG 0.206828 1.3:-74215264 MS.gene75019:CDS
GATCCTTGTTACTGGTATTA+AGG 0.259182 1.3:-74217575 MS.gene75019:intron
GGACGTATCATGAATGTTAT+TGG 0.260657 1.3:-74217800 MS.gene75019:CDS
AAAATTACTGATGAATTTAC+TGG 0.279082 1.3:-74218732 MS.gene75019:CDS
TGCTACCACCTTTGCTCACT+TGG 0.289656 1.3:-74215561 MS.gene75019:CDS
GTCTGCGCCTCCGGCGAAAA+AGG 0.297452 1.3:-74218772 MS.gene75019:CDS
GGTCAAGTTTGTCAGGTTAT+TGG 0.301021 1.3:-74218696 MS.gene75019:CDS
CAATCTCGCGCTTCACCTTA+TGG 0.302992 1.3:-74218852 MS.gene75019:CDS
TTCTCTGTGTTTGCTGGTGT+TGG 0.303687 1.3:-74217246 MS.gene75019:CDS
GGTGGTTTCTCTGTGTTTGC+TGG 0.310509 1.3:-74217252 MS.gene75019:CDS
GTTGGAAGTGGCTCAGCATT+TGG 0.326827 1.3:-74218589 MS.gene75019:CDS
CAAGATATCATTGCTATTCT+GGG 0.368654 1.3:-74215263 MS.gene75019:CDS
CCGACACGGGCACGAGCACC+AGG 0.372154 1.3:+74217007 None:intergenic
ATCCAATCTTTCCTCCCCTT+TGG 0.376397 1.3:+74217436 None:intergenic
ACTGATGAATTTACTGGAAA+AGG 0.377841 1.3:-74218726 MS.gene75019:CDS
AGAGGTAATTGAACCCTTCT+TGG 0.378135 1.3:+74215631 None:intergenic
GCATTTAGGTTCCCGTTGGC+AGG 0.378643 1.3:-74217832 MS.gene75019:intron
AGCTGGTGCGGCGGCAGCCG+CGG 0.383307 1.3:+74218797 None:intergenic
ATTGGATTGTTTGGTGGTGC+TGG 0.384032 1.3:-74217420 MS.gene75019:CDS
CTATCCTGCTGTTGATCCAT+TGG 0.388341 1.3:-74215384 MS.gene75019:CDS
AATCAGCGACGCGGTTTAAG+AGG 0.393361 1.3:+74218826 None:intergenic
GGAGGAAAGATTGGATTGTT+TGG 0.394972 1.3:-74217429 MS.gene75019:CDS
TCTAGATCATTCTTCGAGAT+TGG 0.401462 1.3:-74218613 MS.gene75019:CDS
GCAGGAGCTTCTCTATGAAT+AGG 0.403583 1.3:+74217625 None:intergenic
CCAACATTGTCTACTGATCT+TGG 0.404691 1.3:-74215680 MS.gene75019:CDS
ATCTTTCCTCCCCTTTGGTA+TGG 0.406086 1.3:+74217441 None:intergenic
CCCGTTGGCAGGGCTACCCT+TGG 0.406509 1.3:-74217821 MS.gene75019:CDS
TTGGAAGTGGCTCAGCATTT+GGG 0.411969 1.3:-74218588 MS.gene75019:CDS
TACCAAAGGGGAGGAAAGAT+TGG 0.412235 1.3:-74217438 MS.gene75019:CDS
GAACAACAGATCCTTGTTAC+TGG 0.412746 1.3:-74217583 MS.gene75019:CDS
CATAAGGTGAAGCGCGAGAT+TGG 0.420817 1.3:+74218853 None:intergenic
TTCAACTCAACATATTTGCC+TGG 0.425059 1.3:+74215134 None:intergenic
TTCGAGATTGGTGTTGGAAG+TGG 0.436166 1.3:-74218601 MS.gene75019:CDS
GATGTTGAGGCAGTGATTGA+TGG 0.442204 1.3:+74218888 None:intergenic
ACCAGCTCCGTCTGCGCCTC+CGG 0.443943 1.3:-74218781 MS.gene75019:CDS
TGAAAATAGATTTCTGAGCT+TGG 0.452396 1.3:-74215410 MS.gene75019:intron
GGTCGTATTCCATCTGCTGT+TGG 0.461688 1.3:-74215710 MS.gene75019:CDS
AGCGGTCGGTCAAGTTTGTC+AGG 0.462609 1.3:-74218703 MS.gene75019:CDS
GCCGGAGGCGCAGACGGAGC+TGG 0.462776 1.3:+74218780 None:intergenic
TTGTTTGGTGGTGCTGGTGT+AGG 0.469965 1.3:-74217414 MS.gene75019:CDS
ATAAGGTGAAGCGCGAGATT+GGG 0.471370 1.3:+74218854 None:intergenic
TGCTCATCACCCAAAATAAG+TGG 0.473721 1.3:+74215338 None:intergenic
GGAGAACACTCAAAGTTTCC+AGG 0.477010 1.3:-74215111 None:intergenic
TGAATAGATATTTACACTGA+TGG 0.479353 1.3:+74218485 None:intergenic
CCAAGGGTAGCCCTGCCAAC+GGG 0.484569 1.3:+74217821 None:intergenic
GGAGAACCTATCGATCATAA+AGG 0.484786 1.3:-74217779 MS.gene75019:CDS
AGGCAAATATGTTGAGTTGA+AGG 0.484986 1.3:-74215132 MS.gene75019:CDS
GAAGTCTTCACTGGTGCCCC+AGG 0.485134 1.3:-74215152 MS.gene75019:CDS
AAGTGAGCAAAGGTGGTAGC+AGG 0.486320 1.3:+74215563 None:intergenic
CCCTTTGGTATGGTGCAAGC+AGG 0.487695 1.3:+74217451 None:intergenic
TCCGATCTTGACTGCTCTTG+AGG 0.488534 1.3:-74218637 MS.gene75019:CDS
CAGCAGGCACATAGATAGCT+TGG 0.490509 1.3:+74215606 None:intergenic
CATTAAGCTGGGTGAAAAGC+AGG 0.492871 1.3:-74217169 MS.gene75019:intron
GCAAAGGTGGTAGCAGGAGC+AGG 0.495043 1.3:+74215569 None:intergenic
AAGACTTCTGCCACGTGGAA+AGG 0.495827 1.3:+74215167 None:intergenic
TACAACAGTGTTGTCTAGAC+AGG 0.501816 1.3:-74215534 MS.gene75019:intron
TCAGAGGTGTCTGCCCTGCT+TGG 0.505198 1.3:-74215731 MS.gene75019:CDS
GTTGTACACCACGAGCAGTT+TGG 0.510260 1.3:+74215312 None:intergenic
GAAGATGGCTTCACGCAGAT+TGG 0.511649 1.3:-74218955 None:intergenic
TCAACTCAACATATTTGCCT+GGG 0.512319 1.3:+74215135 None:intergenic
GGAAAGATTGGATTGTTTGG+TGG 0.512411 1.3:-74217426 MS.gene75019:CDS
CGCAGACGGAGCTGGTGCGG+CGG 0.513405 1.3:+74218788 None:intergenic
TGAGAGTGGTGTCATTAAGC+TGG 0.514665 1.3:-74217181 MS.gene75019:CDS
TCATTCTTCGAGATTGGTGT+TGG 0.515515 1.3:-74218607 MS.gene75019:CDS
GGTAATTGAACCCTTCTTGG+TGG 0.519165 1.3:+74215634 None:intergenic
AACAATGTTGCTAAGGCTCA+TGG 0.524856 1.3:-74217363 MS.gene75019:intron
TATCATTGCTATTCTGGGAA+TGG 0.525736 1.3:-74215258 MS.gene75019:CDS
AGCAAATGTGCTCTTGTGTA+TGG 0.527028 1.3:-74217046 MS.gene75019:CDS
CGGTTTAAGAGGTAGCCATA+AGG 0.528728 1.3:+74218837 None:intergenic
ACTTATCAACAATGTTGCTA+AGG 0.530040 1.3:-74217370 MS.gene75019:CDS
CTGAAGGTGTTGTTCGTGGA+TGG 0.535684 1.3:-74218530 MS.gene75019:CDS
GTGGCTCAGCATTTGGGTGA+AGG 0.538038 1.3:-74218582 MS.gene75019:CDS
CATTTAGGTTCCCGTTGGCA+GGG 0.541826 1.3:-74217831 MS.gene75019:intron
AATTCGCCTTTATGATCGAT+AGG 0.542417 1.3:+74217773 None:intergenic
GAATCCAATGGATCAACAGC+AGG 0.543347 1.3:+74215380 None:intergenic
CCTGCTTGCACCATACCAAA+GGG 0.545094 1.3:-74217451 MS.gene75019:CDS
GCGTATTACAACCACCAAGA+AGG 0.546572 1.3:-74215645 MS.gene75019:CDS
GCTACTGAAGGTGTTGTTCG+TGG 0.547853 1.3:-74218534 MS.gene75019:CDS
GTTGCTTGCTCAACAAAAGC+AGG 0.548745 1.3:+74217607 None:intergenic
GGATCTGTCAAATCATCAGC+AGG 0.549266 1.3:+74215590 None:intergenic
CACGTGGCAGAAGTCTTCAC+TGG 0.550208 1.3:-74215161 MS.gene75019:CDS
AGGCGCAGACGGAGCTGGTG+CGG 0.551051 1.3:+74218785 None:intergenic
ACCTCAAGAGCAGTCAAGAT+CGG 0.553967 1.3:+74218636 None:intergenic
CCTGGTGCTCGTGCCCGTGT+CGG 0.555324 1.3:-74217007 MS.gene75019:CDS
TCCAAGGGTAGCCCTGCCAA+CGG 0.557056 1.3:+74217820 None:intergenic
GAATAGATATTTACACTGAT+GGG 0.564594 1.3:+74218486 None:intergenic
GTTGACGTCAGATTTGAAGA+AGG 0.565009 1.3:-74218666 MS.gene75019:CDS
GACACGGGCACGAGCACCAG+GGG 0.566580 1.3:+74217009 None:intergenic
ACCTGCTTGCACCATACCAA+AGG 0.568701 1.3:-74217452 MS.gene75019:CDS
GGAGGTTAGCCTCGATGTTG+AGG 0.570201 1.3:+74218875 None:intergenic
GTTTCGATGAAGATCGGCGA+AGG 0.571803 1.3:+74218910 None:intergenic
TTGATGGTTTCGATGAAGAT+CGG 0.572741 1.3:+74218904 None:intergenic
AAAAGGAGGTTCCCGGAGGT+GGG 0.574915 1.3:-74218755 MS.gene75019:CDS
CACATAGATAGCTTGGACAG+AGG 0.576642 1.3:+74215613 None:intergenic
CGTATTACAACCACCAAGAA+GGG 0.576665 1.3:-74215644 MS.gene75019:CDS
GGTTGGTAACCAACAGCAGA+TGG 0.577576 1.3:+74215701 None:intergenic
ATGAATAGGCAAATAATGCT+CGG 0.578382 1.3:+74217639 None:intergenic
AGATGGAATACGACCAAGCA+GGG 0.581769 1.3:+74215718 None:intergenic
ATACGAGATGTTGAATCCAA+TGG 0.586954 1.3:+74215368 None:intergenic
TAACATTCATGATACGTCCA+AGG 0.587125 1.3:+74217804 None:intergenic
CAGATGGAATACGACCAAGC+AGG 0.590811 1.3:+74215717 None:intergenic
TATTGCATTTAGGTTCCCGT+TGG 0.591161 1.3:-74217836 MS.gene75019:intron
AGCATCCAAGTGAGCAAAGG+TGG 0.598239 1.3:+74215556 None:intergenic
TTCAAATCTGACGTCAACGA+CGG 0.598861 1.3:+74218671 None:intergenic
TTCAGTAGCATCCATAGCAA+TGG 0.599982 1.3:+74218548 None:intergenic
TGTACAAGTCATTACCCTCA+CGG 0.600998 1.3:+74217214 None:intergenic
GATCAGTAGACAATGTTGGT+TGG 0.607921 1.3:+74215684 None:intergenic
AGGTGAAGCGCGAGATTGGG+AGG 0.610480 1.3:+74218857 None:intergenic
CGACACGGGCACGAGCACCA+GGG 0.613887 1.3:+74217008 None:intergenic
TTTACTGGAAAAGGAGCGGT+CGG 0.614536 1.3:-74218717 MS.gene75019:CDS
TGTTGTGAGAACCATTGCTA+TGG 0.617952 1.3:-74218559 MS.gene75019:CDS
TGGTGCTTACTTGAGTAAAG+CGG 0.618849 1.3:+74216906 None:intergenic
AAGTCCAGTAAGACCGACAC+GGG 0.620214 1.3:+74216994 None:intergenic
CCAAGATCAGTAGACAATGT+TGG 0.620434 1.3:+74215680 None:intergenic
GTACAAGTCATTACCCTCAC+GGG 0.622213 1.3:+74217215 None:intergenic
CATCTTGTCCTTCAGCATCA+CGG 0.623861 1.3:+74216954 None:intergenic
GAGAGTGGTGTCATTAAGCT+GGG 0.624808 1.3:-74217180 MS.gene75019:CDS
ACATTGTCTACTGATCTTGG+AGG 0.626628 1.3:-74215677 MS.gene75019:CDS
CAACTCAACATATTTGCCTG+GGG 0.640965 1.3:+74215136 None:intergenic
GAGCATTTCCGTGATGCTGA+AGG 0.641193 1.3:-74216962 MS.gene75019:CDS
GGATGGAGAGTTCTCAACAC+TGG 0.642951 1.3:-74218513 MS.gene75019:CDS
TGTAGCATCCAAGTGAGCAA+AGG 0.644891 1.3:+74215553 None:intergenic
AACATTCATGATACGTCCAA+GGG 0.646240 1.3:+74217805 None:intergenic
TTTCGATGAAGATCGGCGAA+GGG 0.656946 1.3:+74218911 None:intergenic
GAGCACTACCAAACTGCTCG+TGG 0.658374 1.3:-74215320 MS.gene75019:CDS
CGGTTGCATAATCAGCGACG+CGG 0.668541 1.3:+74218817 None:intergenic
CAGTGAAGACTTCTGCCACG+TGG 0.672728 1.3:+74215162 None:intergenic
TCAAGAGCAGTCAAGATCGG+AGG 0.674140 1.3:+74218639 None:intergenic
CTTGCACCATACCAAAGGGG+AGG 0.675495 1.3:-74217447 MS.gene75019:CDS
CTTAAGTCAGCCTTTCCACG+TGG 0.682611 1.3:-74215177 MS.gene75019:CDS
TGAATTTACTGGAAAAGGAG+CGG 0.685743 1.3:-74218721 MS.gene75019:CDS
CGTCGCTGATTATGCAACCG+CGG 0.688793 1.3:-74218814 MS.gene75019:CDS
ATTGCTATGGATGCTACTGA+AGG 0.691576 1.3:-74218546 MS.gene75019:CDS
TTACCTTAATACCAGTAACA+AGG 0.693188 1.3:+74217572 None:intergenic
TACAGAGAAATGATTGAGAG+TGG 0.693204 1.3:-74217195 MS.gene75019:CDS
TAAGTCCAGTAAGACCGACA+CGG 0.693275 1.3:+74216993 None:intergenic
GTTGGAGAAAGAACCCGTGA+GGG 0.695614 1.3:-74217228 MS.gene75019:CDS
TGTTGGAGAAAGAACCCGTG+AGG 0.716517 1.3:-74217229 MS.gene75019:CDS
CAATCACTGCCTCAACATCG+AGG 0.719323 1.3:-74218884 MS.gene75019:CDS
ACACGGGCACGAGCACCAGG+GGG 0.726552 1.3:+74217010 None:intergenic
GTAATTGTAGGCTAACTCAG+AGG 0.733224 1.3:-74215747 MS.gene75019:intron
CTGCTTGCACCATACCAAAG+GGG 0.735053 1.3:-74217450 MS.gene75019:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATTAAAATAGTTCAATT+TGG - chr1.3:74218101-74218120 MS.gene75019:intron 15.0%
!! ATAAAAAGATTTAAGGAAAT+GGG + chr1.3:74216533-74216552 None:intergenic 15.0%
!! ATAAATAGACAATGATAAAA+AGG + chr1.3:74218272-74218291 None:intergenic 15.0%
!! GAAAAGTTATAGAAATTAAA+CGG + chr1.3:74216171-74216190 None:intergenic 15.0%
!!! ATTTCCTTAAATCTTTTTAT+GGG - chr1.3:74216533-74216552 MS.gene75019:intron 15.0%
!!! TTTAGGTAAACTATTTTTTT+GGG - chr1.3:74218155-74218174 MS.gene75019:intron 15.0%
!!! TTTTAATTTTAGAACTAGTT+CGG - chr1.3:74218051-74218070 MS.gene75019:intron 15.0%
!!! TTTTTATTGTTTTTTGATTG+TGG - chr1.3:74215797-74215816 MS.gene75019:intron 15.0%
!! AAAATTACTGATGAATTTAC+TGG - chr1.3:74215331-74215350 MS.gene75019:CDS 20.0%
!! ACAACCTATGAAAAAAAATA+AGG + chr1.3:74216589-74216608 None:intergenic 20.0%
!! ATGAACAATATTATTGAATG+TGG + chr1.3:74216945-74216964 None:intergenic 20.0%
!! ATGGAATAAAAAAAGGATAA+AGG + chr1.3:74217625-74217644 None:intergenic 20.0%
!! ATTACCTGAAATTAAGTTAA+GGG + chr1.3:74217594-74217613 None:intergenic 20.0%
!! CATAAAAAGATTTAAGGAAA+TGG + chr1.3:74216534-74216553 None:intergenic 20.0%
!! GAAAAAAAATAAGGCAAAAT+TGG + chr1.3:74216580-74216599 None:intergenic 20.0%
!! GACAAAAATGGAATAAAAAA+AGG + chr1.3:74217632-74217651 None:intergenic 20.0%
!! TACATAAAAACCAAACATTA+CGG + chr1.3:74218219-74218238 None:intergenic 20.0%
!! TAGACTGAAAATAAATTTAG+AGG + chr1.3:74216326-74216345 None:intergenic 20.0%
!!! AAAAAATGTAATTCCACTTT+TGG - chr1.3:74217874-74217893 MS.gene75019:intron 20.0%
!!! AAAGTGGAATTACATTTTTT+AGG + chr1.3:74217874-74217893 None:intergenic 20.0%
!!! AGAACTAAATGATCTTATTT+CGG - chr1.3:74218623-74218642 MS.gene75019:CDS 20.0%
!!! ATCTGATTTTGAGATAATTT+TGG - chr1.3:74215669-74215688 MS.gene75019:CDS 20.0%
!!! CATTTCCTTAAATCTTTTTA+TGG - chr1.3:74216532-74216551 MS.gene75019:intron 20.0%
!!! GAATTTTTTTTTGACTTTAC+TGG - chr1.3:74215627-74215646 MS.gene75019:CDS 20.0%
!!! GTTTAGGTAAACTATTTTTT+TGG - chr1.3:74218154-74218173 MS.gene75019:intron 20.0%
!!! TAAGTTTTGATTTTTTGAGA+AGG - chr1.3:74215761-74215780 MS.gene75019:intron 20.0%
!!! TAATGTTTGGTTTTTATGTA+TGG - chr1.3:74218219-74218238 MS.gene75019:intron 20.0%
!!! TATGTATGGTTTTTTATAGA+TGG - chr1.3:74218233-74218252 MS.gene75019:intron 20.0%
!!! TATTTTTGGAGCTTAATTTA+AGG + chr1.3:74217485-74217504 None:intergenic 20.0%
!!! TTAAGAATCGTTGAATTTTA+CGG + chr1.3:74218871-74218890 None:intergenic 20.0%
!!! TTTGCCTTATTTTTTTTCAT+AGG - chr1.3:74216582-74216601 MS.gene75019:intron 20.0%
! AATCCAAAAGAAAGTCAAAT+TGG + chr1.3:74216083-74216102 None:intergenic 25.0%
! ACTGCAATGAAAAAAGATAA+AGG - chr1.3:74217800-74217819 MS.gene75019:CDS 25.0%
! ACTGTGTATAGCTATTATTA+TGG + chr1.3:74218025-74218044 None:intergenic 25.0%
! AGGAAAAACAGTTCTTATTA+TGG - chr1.3:74216669-74216688 MS.gene75019:intron 25.0%
! CATTACCTGAAATTAAGTTA+AGG + chr1.3:74217595-74217614 None:intergenic 25.0%
! CGTGATTACAGTAAATTAAA+CGG + chr1.3:74215897-74215916 None:intergenic 25.0%
! CTTTCAATCTTCAAATATGT+GGG - chr1.3:74217711-74217730 MS.gene75019:intron 25.0%
! GAATAGATATTTACACTGAT+GGG + chr1.3:74215580-74215599 None:intergenic 25.0%
! TATTGCCTGAAATTAAGTTA+AGG - chr1.3:74217830-74217849 MS.gene75019:intron 25.0%
! TGAATAGATATTTACACTGA+TGG + chr1.3:74215581-74215600 None:intergenic 25.0%
! TGTATCAAAGTCGTTAATTA+TGG - chr1.3:74216975-74216994 MS.gene75019:CDS 25.0%
! TGTGAAAAAAATACCAAAAG+TGG + chr1.3:74217890-74217909 None:intergenic 25.0%
! TTAGTCCTTAACTTAATTTC+AGG + chr1.3:74217838-74217857 None:intergenic 25.0%
! TTGCAATTAAAAGTAAAAGC+AGG - chr1.3:74215963-74215982 MS.gene75019:intron 25.0%
! TTTGCCCATAAAAAGATTTA+AGG + chr1.3:74216540-74216559 None:intergenic 25.0%
!! AACATACTTAAAACGCTTTT+TGG + chr1.3:74216193-74216212 None:intergenic 25.0%
!! AATTTTTATGTTGCGTTTCA+TGG - chr1.3:74215696-74215715 MS.gene75019:CDS 25.0%
!! AGTTTGCATTAGTAAGTTTT+GGG + chr1.3:74217199-74217218 None:intergenic 25.0%
!! TAAGAATCGTTGAATTTTAC+GGG + chr1.3:74218870-74218889 None:intergenic 25.0%
!! TTTTTCACAATAAGTGATGA+TGG - chr1.3:74217988-74218007 MS.gene75019:intron 25.0%
!!! ACGCTGTACATATTTTAAAT+GGG - chr1.3:74215934-74215953 MS.gene75019:intron 25.0%
!!! CTTAATTTCAGGTAATGTTT+TGG - chr1.3:74217598-74217617 MS.gene75019:CDS 25.0%
!!! GTAAACTATTTTTTTGGGTT+TGG - chr1.3:74218160-74218179 MS.gene75019:intron 25.0%
!!! TACGCTGTACATATTTTAAA+TGG - chr1.3:74215933-74215952 MS.gene75019:intron 25.0%
!!! TTATTCCATTTTTGTCCTAT+TGG - chr1.3:74217636-74217655 MS.gene75019:CDS 25.0%
ACTGATGAATTTACTGGAAA+AGG - chr1.3:74215337-74215356 MS.gene75019:CDS 30.0%
ACTTATCAACAATGTTGCTA+AGG - chr1.3:74216693-74216712 MS.gene75019:intron 30.0%
ATGAACCAATAGGACAAAAA+TGG + chr1.3:74217644-74217663 None:intergenic 30.0%
ATGAATAGGCAAATAATGCT+CGG + chr1.3:74216427-74216446 None:intergenic 30.0%
CAAAAGTAAAAACCAATAGC+AGG + chr1.3:74216129-74216148 None:intergenic 30.0%
CATTGTTGTGTATTGCATTT+AGG - chr1.3:74216217-74216236 MS.gene75019:intron 30.0%
CCACATATTTGAAGATTGAA+AGG + chr1.3:74217713-74217732 None:intergenic 30.0%
CCTTTCAATCTTCAAATATG+TGG - chr1.3:74217710-74217729 MS.gene75019:intron 30.0%
CTTAATTTCAGGCAATAGTT+AGG + chr1.3:74217827-74217846 None:intergenic 30.0%
CTTGAAAATCCATATGCAAA+AGG - chr1.3:74217773-74217792 MS.gene75019:CDS 30.0%
TAGTCCCTTAACTTAATTTC+AGG - chr1.3:74217587-74217606 MS.gene75019:CDS 30.0%
TCATCAGTTGAAAATCACTA+TGG + chr1.3:74216379-74216398 None:intergenic 30.0%
TGAAAATAGATTTCTGAGCT+TGG - chr1.3:74218653-74218672 MS.gene75019:CDS 30.0%
TTACCTTAATACCAGTAACA+AGG + chr1.3:74216494-74216513 None:intergenic 30.0%
TTTATTAGCTCGATAGAATC+AGG - chr1.3:74217963-74217982 MS.gene75019:intron 30.0%
! CAAGATATCATTGCTATTCT+GGG - chr1.3:74218800-74218819 MS.gene75019:CDS 30.0%
! CAGTTTGCATTAGTAAGTTT+TGG + chr1.3:74217200-74217219 None:intergenic 30.0%
! GATAAATGGGGTCTTTTTAA+TGG - chr1.3:74215846-74215865 MS.gene75019:intron 30.0%
! GCTAATAAATTGCGTGTTTT+AGG + chr1.3:74217952-74217971 None:intergenic 30.0%
! TATGCTTTCTCCACTTATTT+TGG - chr1.3:74218715-74218734 MS.gene75019:CDS 30.0%
! TCAAGATATCATTGCTATTC+TGG - chr1.3:74218799-74218818 MS.gene75019:CDS 30.0%
! TGGGTGCATGATTTAAATTT+TGG + chr1.3:74217180-74217199 None:intergenic 30.0%
! TGTTCTTTGTGTTTGGTAAT+TGG - chr1.3:74217330-74217349 MS.gene75019:intron 30.0%
!! ATGCTTTCTCCACTTATTTT+GGG - chr1.3:74218716-74218735 MS.gene75019:CDS 30.0%
!! ATTTTCAAGCTTGAAATCCA+CGG - chr1.3:74217674-74217693 MS.gene75019:intron 30.0%
!! TTTAGGAAAATTTGGTGTCA+CGG + chr1.3:74217935-74217954 None:intergenic 30.0%
!!! AATTTTAGAACTAGTTCGGT+AGG - chr1.3:74218055-74218074 MS.gene75019:intron 30.0%
!!! ATTTTAGAACTAGTTCGGTA+GGG - chr1.3:74218056-74218075 MS.gene75019:intron 30.0%
!!! TATTTTAATGTTCAGTCCAG+TGG + chr1.3:74218093-74218112 None:intergenic 30.0%
!!! TTGCGTGTTTTAGGAAAATT+TGG + chr1.3:74217943-74217962 None:intergenic 30.0%
AACATTCATGATACGTCCAA+GGG + chr1.3:74216261-74216280 None:intergenic 35.0%
AATTCGCCTTTATGATCGAT+AGG + chr1.3:74216293-74216312 None:intergenic 35.0%
ATAAATTGCCCAAACCAAAC+AGG + chr1.3:74215874-74215893 None:intergenic 35.0%
ATACGAGATGTTGAATCCAA+TGG + chr1.3:74218698-74218717 None:intergenic 35.0%
ATGATGCCTGATGTAATTGT+AGG - chr1.3:74218304-74218323 MS.gene75019:intron 35.0%
ATGTCAATCCTCGATAAATG+GGG - chr1.3:74215834-74215853 MS.gene75019:intron 35.0%
CAGAGAAACCACCTATTATA+TGG + chr1.3:74216804-74216823 None:intergenic 35.0%
GAAAGTCAAATTGGAGCAAA+TGG + chr1.3:74216074-74216093 None:intergenic 35.0%
GAACACATGTTCTTTGTGTT+TGG - chr1.3:74217323-74217342 MS.gene75019:intron 35.0%
GAGTGTTTCCATATAATAGG+TGG - chr1.3:74216793-74216812 MS.gene75019:intron 35.0%
GATCCTTGTTACTGGTATTA+AGG - chr1.3:74216488-74216507 MS.gene75019:intron 35.0%
GATGTCAATCCTCGATAAAT+GGG - chr1.3:74215833-74215852 MS.gene75019:intron 35.0%
GCTGAGTGTTTCCATATAAT+AGG - chr1.3:74216790-74216809 MS.gene75019:intron 35.0%
GGACGTATCATGAATGTTAT+TGG - chr1.3:74216263-74216282 MS.gene75019:intron 35.0%
GTGCAAAAAGCAAGTAGAAA+AGG + chr1.3:74217454-74217473 None:intergenic 35.0%
TAAAAAGACCCCATTTATCG+AGG + chr1.3:74215845-74215864 None:intergenic 35.0%
TAAACACAAGCAGTTCGATT+TGG - chr1.3:74218132-74218151 MS.gene75019:intron 35.0%
TAACATTCATGATACGTCCA+AGG + chr1.3:74216262-74216281 None:intergenic 35.0%
TACAGAGAAATGATTGAGAG+TGG - chr1.3:74216868-74216887 MS.gene75019:intron 35.0%
TCAAATGCAGATGAACCAAT+AGG + chr1.3:74217654-74217673 None:intergenic 35.0%
TCAACTCAACATATTTGCCT+GGG + chr1.3:74218931-74218950 None:intergenic 35.0%
TCTAGATCATTCTTCGAGAT+TGG - chr1.3:74215450-74215469 MS.gene75019:intron 35.0%
TGAATTTACTGGAAAAGGAG+CGG - chr1.3:74215342-74215361 MS.gene75019:CDS 35.0%
TGATGTCAATCCTCGATAAA+TGG - chr1.3:74215832-74215851 MS.gene75019:intron 35.0%
TTCAACTCAACATATTTGCC+TGG + chr1.3:74218932-74218951 None:intergenic 35.0%
! AAATCCACGGTTTTCTTTTG+CGG - chr1.3:74217687-74217706 MS.gene75019:intron 35.0%
! AAGCGCTAAAGCATTAAGTT+AGG + chr1.3:74216731-74216750 None:intergenic 35.0%
! AGTTAGCCTACAATTACATC+AGG + chr1.3:74218313-74218332 None:intergenic 35.0%
! TATCATTGCTATTCTGGGAA+TGG - chr1.3:74218805-74218824 MS.gene75019:CDS 35.0%
! TTGATGGTTTCGATGAAGAT+CGG + chr1.3:74215162-74215181 None:intergenic 35.0%
!! AGGCAAATATGTTGAGTTGA+AGG - chr1.3:74218931-74218950 MS.gene75019:CDS 35.0%
!! GCTCCAATTTGACTTTCTTT+TGG - chr1.3:74216077-74216096 MS.gene75019:intron 35.0%
!! TGTTCATGGTTTGGTTAGTA+TGG + chr1.3:74218195-74218214 None:intergenic 35.0%
AACAATGTTGCTAAGGCTCA+TGG - chr1.3:74216700-74216719 MS.gene75019:intron 40.0%
ACATTGTCTACTGATCTTGG+AGG - chr1.3:74218386-74218405 MS.gene75019:intron 40.0%
AGAGGTAATTGAACCCTTCT+TGG + chr1.3:74218435-74218454 None:intergenic 40.0%
AGCAAATGTGCTCTTGTGTA+TGG - chr1.3:74217017-74217036 MS.gene75019:CDS 40.0%
ATTGCTATGGATGCTACTGA+AGG - chr1.3:74215517-74215536 MS.gene75019:intron 40.0%
CAACTCAACATATTTGCCTG+GGG + chr1.3:74218930-74218949 None:intergenic 40.0%
CAGTTCAATAGCACACAGTT+CGG + chr1.3:74217277-74217296 None:intergenic 40.0%
CATTACGGTTGTTCATGGTT+TGG + chr1.3:74218204-74218223 None:intergenic 40.0%
CCAAACATTACGGTTGTTCA+TGG + chr1.3:74218209-74218228 None:intergenic 40.0%
CCAACATTGTCTACTGATCT+TGG - chr1.3:74218383-74218402 MS.gene75019:intron 40.0%
CCAAGATCAGTAGACAATGT+TGG + chr1.3:74218386-74218405 None:intergenic 40.0%
CCATGAACAACCGTAATGTT+TGG - chr1.3:74218206-74218225 MS.gene75019:intron 40.0%
CGTATTACAACCACCAAGAA+GGG - chr1.3:74218419-74218438 MS.gene75019:intron 40.0%
GAACAACAGATCCTTGTTAC+TGG - chr1.3:74216480-74216499 MS.gene75019:intron 40.0%
GATCAGTAGACAATGTTGGT+TGG + chr1.3:74218382-74218401 None:intergenic 40.0%
GCAAGTTTCAGACACAAACA+CGG + chr1.3:74217383-74217402 None:intergenic 40.0%
GGAAAGATTGGATTGTTTGG+TGG - chr1.3:74216637-74216656 MS.gene75019:intron 40.0%
GGAGAACCTATCGATCATAA+AGG - chr1.3:74216284-74216303 MS.gene75019:intron 40.0%
GGAGGAAAGATTGGATTGTT+TGG - chr1.3:74216634-74216653 MS.gene75019:intron 40.0%
GGATTTGAATCTTGCAAGCA+CGG - chr1.3:74216098-74216117 MS.gene75019:intron 40.0%
GGTCAAGTTTGTCAGGTTAT+TGG - chr1.3:74215367-74215386 MS.gene75019:CDS 40.0%
GTAATTGTAGGCTAACTCAG+AGG - chr1.3:74218316-74218335 MS.gene75019:intron 40.0%
GTTGACGTCAGATTTGAAGA+AGG - chr1.3:74215397-74215416 MS.gene75019:CDS 40.0%
TACAACAGTGTTGTCTAGAC+AGG - chr1.3:74218529-74218548 MS.gene75019:CDS 40.0%
TATGTTGCGTTTCATGGATC+TGG - chr1.3:74215702-74215721 MS.gene75019:CDS 40.0%
TCATTCTTCGAGATTGGTGT+TGG - chr1.3:74215456-74215475 MS.gene75019:intron 40.0%
TGCTCATCACCCAAAATAAG+TGG + chr1.3:74218728-74218747 None:intergenic 40.0%
TGGTGCTTACTTGAGTAAAG+CGG + chr1.3:74217160-74217179 None:intergenic 40.0%
TGTACAAGTCATTACCCTCA+CGG + chr1.3:74216852-74216871 None:intergenic 40.0%
TGTTGTGAGAACCATTGCTA+TGG - chr1.3:74215504-74215523 MS.gene75019:intron 40.0%
TTCAAATCTGACGTCAACGA+CGG + chr1.3:74215395-74215414 None:intergenic 40.0%
TTCAGTAGCATCCATAGCAA+TGG + chr1.3:74215518-74215537 None:intergenic 40.0%
! ACTGTGTGCTATTGAACTGT+TGG - chr1.3:74217278-74217297 MS.gene75019:intron 40.0%
! ATCAGTAATTTTCCCACCTC+CGG + chr1.3:74215323-74215342 None:intergenic 40.0%
! GCAGTTTGTCCTTTTGCATA+TGG + chr1.3:74217785-74217804 None:intergenic 40.0%
! TATTGCATTTAGGTTCCCGT+TGG - chr1.3:74216227-74216246 MS.gene75019:intron 40.0%
! TCTTTTTAATGGCGCCTGTT+TGG - chr1.3:74215857-74215876 MS.gene75019:intron 40.0%
!! CAAGCAGTTCGATTTGGTTT+AGG - chr1.3:74218138-74218157 MS.gene75019:intron 40.0%
!! TTTCACACAGTTTGCTGCAA+TGG - chr1.3:74217903-74217922 MS.gene75019:intron 40.0%
ACCTCAAGAGCAGTCAAGAT+CGG + chr1.3:74215430-74215449 None:intergenic 45.0%
AGATGGAATACGACCAAGCA+GGG + chr1.3:74218348-74218367 None:intergenic 45.0%
ATAAGGTGAAGCGCGAGATT+GGG + chr1.3:74215212-74215231 None:intergenic 45.0%
ATCCAATCTTTCCTCCCCTT+TGG + chr1.3:74216630-74216649 None:intergenic 45.0%
ATCTTTCCTCCCCTTTGGTA+TGG + chr1.3:74216625-74216644 None:intergenic 45.0%
CAATAGCACACAGTTCGGTT+TGG + chr1.3:74217272-74217291 None:intergenic 45.0%
CACATAGATAGCTTGGACAG+AGG + chr1.3:74218453-74218472 None:intergenic 45.0%
CAGAGTAACACAGACACATG+TGG + chr1.3:74216000-74216019 None:intergenic 45.0%
CATCTTGTCCTTCAGCATCA+CGG + chr1.3:74217112-74217131 None:intergenic 45.0%
CATTAAGCTGGGTGAAAAGC+AGG - chr1.3:74216894-74216913 MS.gene75019:intron 45.0%
CGGTTTAAGAGGTAGCCATA+AGG + chr1.3:74215229-74215248 None:intergenic 45.0%
CTATCCTGCTGTTGATCCAT+TGG - chr1.3:74218679-74218698 MS.gene75019:CDS 45.0%
GAATCCAATGGATCAACAGC+AGG + chr1.3:74218686-74218705 None:intergenic 45.0%
GATGTTGAGGCAGTGATTGA+TGG + chr1.3:74215178-74215197 None:intergenic 45.0%
GCAGGAGCTTCTCTATGAAT+AGG + chr1.3:74216441-74216460 None:intergenic 45.0%
GCGTATTACAACCACCAAGA+AGG - chr1.3:74218418-74218437 MS.gene75019:intron 45.0%
GGATCTGTCAAATCATCAGC+AGG + chr1.3:74218476-74218495 None:intergenic 45.0%
GGTAATTGAACCCTTCTTGG+TGG + chr1.3:74218432-74218451 None:intergenic 45.0%
GTACAAGTCATTACCCTCAC+GGG + chr1.3:74216851-74216870 None:intergenic 45.0%
GTTGCTTGCTCAACAAAAGC+AGG + chr1.3:74216459-74216478 None:intergenic 45.0%
TAAGTCCAGTAAGACCGACA+CGG + chr1.3:74217073-74217092 None:intergenic 45.0%
TACCAAAGGGGAGGAAAGAT+TGG - chr1.3:74216625-74216644 MS.gene75019:intron 45.0%
TGTAGCATCCAAGTGAGCAA+AGG + chr1.3:74218513-74218532 None:intergenic 45.0%
TTAATGGCGCCTGTTTGGTT+TGG - chr1.3:74215862-74215881 MS.gene75019:intron 45.0%
TTGGAAGTGGCTCAGCATTT+GGG - chr1.3:74215475-74215494 MS.gene75019:intron 45.0%
TTTACTGGAAAAGGAGCGGT+CGG - chr1.3:74215346-74215365 MS.gene75019:CDS 45.0%
TTTCGATGAAGATCGGCGAA+GGG + chr1.3:74215155-74215174 None:intergenic 45.0%
! AGCACGGATTTTCCTGCTAT+TGG - chr1.3:74216114-74216133 MS.gene75019:intron 45.0%
! TAATGGCGCCTGTTTGGTTT+GGG - chr1.3:74215863-74215882 MS.gene75019:intron 45.0%
! TAGGGAAGCATAAGAACCAC+TGG - chr1.3:74218074-74218093 MS.gene75019:intron 45.0%
! TCAGTAATTTTCCCACCTCC+GGG + chr1.3:74215322-74215341 None:intergenic 45.0%
! TTCTCTGTGTTTGCTGGTGT+TGG - chr1.3:74216817-74216836 MS.gene75019:intron 45.0%
!! ATTGGATTGTTTGGTGGTGC+TGG - chr1.3:74216643-74216662 MS.gene75019:intron 45.0%
!! GAGAGTGGTGTCATTAAGCT+GGG - chr1.3:74216883-74216902 MS.gene75019:intron 45.0%
!! TGAGAGTGGTGTCATTAAGC+TGG - chr1.3:74216882-74216901 MS.gene75019:intron 45.0%
!! TTCGAGATTGGTGTTGGAAG+TGG - chr1.3:74215462-74215481 MS.gene75019:intron 45.0%
!!! ATAATTAAATTAAATTTTGT+TGG - chr1.3:74217539-74217558 MS.gene75019:intron 5.0%
!!! TTAAAGATTTAATTTATTTT+TGG + chr1.3:74217499-74217518 None:intergenic 5.0%
AAGACTTCTGCCACGTGGAA+AGG + chr1.3:74218899-74218918 None:intergenic 50.0%
AAGGCCGCAAAAGAAAACCG+TGG + chr1.3:74217694-74217713 None:intergenic 50.0%
AAGTCCAGTAAGACCGACAC+GGG + chr1.3:74217072-74217091 None:intergenic 50.0%
AAGTGAGCAAAGGTGGTAGC+AGG + chr1.3:74218503-74218522 None:intergenic 50.0%
AATCAGCGACGCGGTTTAAG+AGG + chr1.3:74215240-74215259 None:intergenic 50.0%
ACCTGCTTGCACCATACCAA+AGG - chr1.3:74216611-74216630 MS.gene75019:intron 50.0%
AGCATCCAAGTGAGCAAAGG+TGG + chr1.3:74218510-74218529 None:intergenic 50.0%
CAATCACTGCCTCAACATCG+AGG - chr1.3:74215179-74215198 MS.gene75019:CDS 50.0%
CAATCTCGCGCTTCACCTTA+TGG - chr1.3:74215211-74215230 MS.gene75019:CDS 50.0%
CAGATGGAATACGACCAAGC+AGG + chr1.3:74218349-74218368 None:intergenic 50.0%
CAGCAGGCACATAGATAGCT+TGG + chr1.3:74218460-74218479 None:intergenic 50.0%
CATAAGGTGAAGCGCGAGAT+TGG + chr1.3:74215213-74215232 None:intergenic 50.0%
CCTGCTTGCACCATACCAAA+GGG - chr1.3:74216612-74216631 MS.gene75019:intron 50.0%
CTGCTTGCACCATACCAAAG+GGG - chr1.3:74216613-74216632 MS.gene75019:intron 50.0%
CTTAAGTCAGCCTTTCCACG+TGG - chr1.3:74218886-74218905 MS.gene75019:CDS 50.0%
GAGCATTTCCGTGATGCTGA+AGG - chr1.3:74217101-74217120 MS.gene75019:intron 50.0%
GGATGGAGAGTTCTCAACAC+TGG - chr1.3:74215550-74215569 MS.gene75019:CDS 50.0%
GGTCGTATTCCATCTGCTGT+TGG - chr1.3:74218353-74218372 MS.gene75019:intron 50.0%
GGTGGTTTCTCTGTGTTTGC+TGG - chr1.3:74216811-74216830 MS.gene75019:intron 50.0%
GTAATTGGCAGCAGCAAGCT+TGG - chr1.3:74217345-74217364 MS.gene75019:intron 50.0%
GTTGGAAGTGGCTCAGCATT+TGG - chr1.3:74215474-74215493 MS.gene75019:intron 50.0%
GTTGGAGAAAGAACCCGTGA+GGG - chr1.3:74216835-74216854 MS.gene75019:intron 50.0%
GTTGTACACCACGAGCAGTT+TGG + chr1.3:74218754-74218773 None:intergenic 50.0%
GTTTCGATGAAGATCGGCGA+AGG + chr1.3:74215156-74215175 None:intergenic 50.0%
TCAAGAGCAGTCAAGATCGG+AGG + chr1.3:74215427-74215446 None:intergenic 50.0%
TCCGATCTTGACTGCTCTTG+AGG - chr1.3:74215426-74215445 MS.gene75019:intron 50.0%
TGCTACCACCTTTGCTCACT+TGG - chr1.3:74218502-74218521 MS.gene75019:CDS 50.0%
TGTTGGAGAAAGAACCCGTG+AGG - chr1.3:74216834-74216853 MS.gene75019:intron 50.0%
! CATTTAGGTTCCCGTTGGCA+GGG - chr1.3:74216232-74216251 MS.gene75019:intron 50.0%
!! CTGAAGGTGTTGTTCGTGGA+TGG - chr1.3:74215533-74215552 MS.gene75019:intron 50.0%
!! GCTACTGAAGGTGTTGTTCG+TGG - chr1.3:74215529-74215548 MS.gene75019:intron 50.0%
!! GGTTGGTAACCAACAGCAGA+TGG + chr1.3:74218365-74218384 None:intergenic 50.0%
!! TTGTTTGGTGGTGCTGGTGT+AGG - chr1.3:74216649-74216668 MS.gene75019:intron 50.0%
AAAAAGGAGGTTCCCGGAGG+TGG - chr1.3:74215307-74215326 MS.gene75019:CDS 55.0%
AAAAGGAGGTTCCCGGAGGT+GGG - chr1.3:74215308-74215327 MS.gene75019:CDS 55.0%
AGCGGTCGGTCAAGTTTGTC+AGG - chr1.3:74215360-74215379 MS.gene75019:CDS 55.0%
CACGTGGCAGAAGTCTTCAC+TGG - chr1.3:74218902-74218921 MS.gene75019:CDS 55.0%
CAGTGAAGACTTCTGCCACG+TGG + chr1.3:74218904-74218923 None:intergenic 55.0%
CCCTTTGGTATGGTGCAAGC+AGG + chr1.3:74216615-74216634 None:intergenic 55.0%
CGGTTGCATAATCAGCGACG+CGG + chr1.3:74215249-74215268 None:intergenic 55.0%
CTTGCACCATACCAAAGGGG+AGG - chr1.3:74216616-74216635 MS.gene75019:intron 55.0%
GAGCACTACCAAACTGCTCG+TGG - chr1.3:74218743-74218762 MS.gene75019:CDS 55.0%
GTGGCTCAGCATTTGGGTGA+AGG - chr1.3:74215481-74215500 MS.gene75019:intron 55.0%
! CGTCGCTGATTATGCAACCG+CGG - chr1.3:74215249-74215268 MS.gene75019:CDS 55.0%
! GCATTTAGGTTCCCGTTGGC+AGG - chr1.3:74216231-74216250 MS.gene75019:intron 55.0%
!! GGAGGTTAGCCTCGATGTTG+AGG + chr1.3:74215191-74215210 None:intergenic 55.0%
AGGTGAAGCGCGAGATTGGG+AGG + chr1.3:74215209-74215228 None:intergenic 60.0%
CCGGCGAAAAAGGAGGTTCC+CGG - chr1.3:74215301-74215320 MS.gene75019:CDS 60.0%
GAAGTCTTCACTGGTGCCCC+AGG - chr1.3:74218911-74218930 MS.gene75019:CDS 60.0%
GCAAAGGTGGTAGCAGGAGC+AGG + chr1.3:74218497-74218516 None:intergenic 60.0%
GCGAAAAAGGAGGTTCCCGG+AGG - chr1.3:74215304-74215323 MS.gene75019:CDS 60.0%
GGTCAGATGAATGAGCCCCC+TGG - chr1.3:74217038-74217057 MS.gene75019:CDS 60.0%
TCCAAGGGTAGCCCTGCCAA+CGG + chr1.3:74216246-74216265 None:intergenic 60.0%
!! CCGGGAACCTCCTTTTTCGC+CGG + chr1.3:74215304-74215323 None:intergenic 60.0%
!! GGAACCTCCTTTTTCGCCGG+AGG + chr1.3:74215301-74215320 None:intergenic 60.0%
!! TCAGAGGTGTCTGCCCTGCT+TGG - chr1.3:74218332-74218351 MS.gene75019:intron 60.0%
!! TTTTTCGCCGGAGGCGCAGA+CGG + chr1.3:74215292-74215311 None:intergenic 60.0%
CCAAGGGTAGCCCTGCCAAC+GGG + chr1.3:74216245-74216264 None:intergenic 65.0%
GTCTGCGCCTCCGGCGAAAA+AGG - chr1.3:74215291-74215310 MS.gene75019:CDS 65.0%
TGCGCCTCCGGCGAAAAAGG+AGG - chr1.3:74215294-74215313 MS.gene75019:CDS 65.0%
! CGTGCCCGTGTCGGTCTTAC+TGG - chr1.3:74217065-74217084 MS.gene75019:intron 65.0%
ACACGGGCACGAGCACCAGG+GGG + chr1.3:74217056-74217075 None:intergenic 70.0%
ACCAGCTCCGTCTGCGCCTC+CGG - chr1.3:74215282-74215301 MS.gene75019:CDS 70.0%
AGGCGCAGACGGAGCTGGTG+CGG + chr1.3:74215281-74215300 None:intergenic 70.0%
CCCGTTGGCAGGGCTACCCT+TGG - chr1.3:74216242-74216261 MS.gene75019:intron 70.0%
CCTGGTGCTCGTGCCCGTGT+CGG - chr1.3:74217056-74217075 MS.gene75019:intron 70.0%
CGACACGGGCACGAGCACCA+GGG + chr1.3:74217058-74217077 None:intergenic 70.0%
GACACGGGCACGAGCACCAG+GGG + chr1.3:74217057-74217076 None:intergenic 70.0%
CCGACACGGGCACGAGCACC+AGG + chr1.3:74217059-74217078 None:intergenic 75.0%
CGCAGACGGAGCTGGTGCGG+CGG + chr1.3:74215278-74215297 None:intergenic 75.0%
! AGCTGGTGCGGCGGCAGCCG+CGG + chr1.3:74215269-74215288 None:intergenic 80.0%
!! GCCGGAGGCGCAGACGGAGC+TGG + chr1.3:74215286-74215305 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 74215112 74218973 74215112 ID=MS.gene75019
chr1.3 mRNA 74215112 74218973 74215112 ID=MS.gene75019.t1;Parent=MS.gene75019
chr1.3 exon 74218500 74218973 74218500 ID=MS.gene75019.t1.exon1;Parent=MS.gene75019.t1
chr1.3 CDS 74218500 74218973 74218500 ID=cds.MS.gene75019.t1;Parent=MS.gene75019.t1
chr1.3 exon 74217771 74217846 74217771 ID=MS.gene75019.t1.exon2;Parent=MS.gene75019.t1
chr1.3 CDS 74217771 74217846 74217771 ID=cds.MS.gene75019.t1;Parent=MS.gene75019.t1
chr1.3 exon 74217576 74217664 74217576 ID=MS.gene75019.t1.exon3;Parent=MS.gene75019.t1
chr1.3 CDS 74217576 74217664 74217576 ID=cds.MS.gene75019.t1;Parent=MS.gene75019.t1
chr1.3 exon 74217364 74217481 74217364 ID=MS.gene75019.t1.exon4;Parent=MS.gene75019.t1
chr1.3 CDS 74217364 74217481 74217364 ID=cds.MS.gene75019.t1;Parent=MS.gene75019.t1
chr1.3 exon 74217170 74217273 74217170 ID=MS.gene75019.t1.exon5;Parent=MS.gene75019.t1
chr1.3 CDS 74217170 74217273 74217170 ID=cds.MS.gene75019.t1;Parent=MS.gene75019.t1
chr1.3 exon 74216916 74217074 74216916 ID=MS.gene75019.t1.exon6;Parent=MS.gene75019.t1
chr1.3 CDS 74216916 74217074 74216916 ID=cds.MS.gene75019.t1;Parent=MS.gene75019.t1
chr1.3 exon 74215535 74215759 74215535 ID=MS.gene75019.t1.exon7;Parent=MS.gene75019.t1
chr1.3 CDS 74215535 74215759 74215535 ID=cds.MS.gene75019.t1;Parent=MS.gene75019.t1
chr1.3 exon 74215112 74215423 74215112 ID=MS.gene75019.t1.exon8;Parent=MS.gene75019.t1
chr1.3 CDS 74215112 74215423 74215112 ID=cds.MS.gene75019.t1;Parent=MS.gene75019.t1
Gene Sequence

>MS.gene75019

ATGGCTTCACGCAGATTGGTATCATCTCTGATTCGATCTTCCCTTCGCCGATCTTCATCGAAACCATCAATCACTGCCTCAACATCGAGGCTAACCTCCCAATCTCGCGCTTCACCTTATGGCTACCTCTTAAACCGCGTCGCTGATTATGCAACCGCGGCTGCCGCCGCACCAGCTCCGTCTGCGCCTCCGGCGAAAAAGGAGGTTCCCGGAGGTGGGAAAATTACTGATGAATTTACTGGAAAAGGAGCGGTCGGTCAAGTTTGTCAGGTTATTGGTGCCGTCGTTGACGTCAGATTTGAAGAAGGTTTGCCTCCGATCTTGACTGCTCTTGAGGTTCTAGATCATTCTTCGAGATTGGTGTTGGAAGTGGCTCAGCATTTGGGTGAAGGTGTTGTGAGAACCATTGCTATGGATGCTACTGAAGGTGTTGTTCGTGGATGGAGAGTTCTCAACACTGGTTCTCCCATCAGTGTAAATATCTATTCAATTTATTTCATTCAATTTTCATTTCTGAATTTTTTTTTGACTTTACTGGAGTTTTCACTGTTTGTGAGATCTGATTTTGAGATAATTTTGGTTTGAATTTTTATGTTGCGTTTCATGGATCTGGTGTATTTTTTTCTCATTATGTAATTACGTAATTGATTAAGTTTTGATTTTTTGAGAAGGAAATTTGATTTTGTTTTTATTGTTTTTTGATTGTGGATGCATGAATAATGATGTCAATCCTCGATAAATGGGGTCTTTTTAATGGCGCCTGTTTGGTTTGGGCAATTTATCCGTTTAATTTACTGTAATCACGTTTAAATGCAAAGTTGTACGCTGTACATATTTTAAATGGGATATTTTTGCAATTAAAAGTAAAAGCAGGAAATGATGAAACCACATGTGTCTGTGTTACTCTGTCAGTGCTACATAGCTATATAGTTATATTGCTTTTGTGAATGTGATGTGATCCATTTGCTCCAATTTGACTTTCTTTTGGATTTGAATCTTGCAAGCACGGATTTTCCTGCTATTGGTTTTTACTTTTGATTATTGTGTCTGTCACTACCGTTTAATTTCTATAACTTTTCCAAAAAGCGTTTTAAGTATGTTCTAACATTGTTGTGTATTGCATTTAGGTTCCCGTTGGCAGGGCTACCCTTGGACGTATCATGAATGTTATTGGAGAACCTATCGATCATAAAGGCGAATTCAGTAAGAAACCTCTAAATTTATTTTCAGTCTAATTGATACAATAAAGTATTTTCTATCAATTCCATAGTGATTTTCAACTGATGATAATTTTTCTGAATTGCTTTAGAAACCGAGCATTATTTGCCTATTCATAGAGAAGCTCCTGCTTTTGTTGAGCAAGCAACTGAACAACAGATCCTTGTTACTGGTATTAAGGTAATTGTGAATGCATCAATCCCATTTCCTTAAATCTTTTTATGGGCAAATATATAATGACTTTACACCAATTTTGCCTTATTTTTTTTCATAGGTTGTAGACCTGCTTGCACCATACCAAAGGGGAGGAAAGATTGGATTGTTTGGTGGTGCTGGTGTAGGAAAAACAGTTCTTATTATGGAACTTATCAACAATGTTGCTAAGGCTCATGGTATATCCTAACTTAATGCTTTAGCGCTTAACTTATTCTTATTGAGATGCTATTTTTCTATGTTGTATGCTGAGTGTTTCCATATAATAGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAAAGAACCCGTGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTGGGTGAAAAGCAGGTGAACACAATGCTTTAATTCATGATCCACATTCAATAATATTGTTCATACTATTTTCATGTATCAAAGTCGTTAATTATGGTTGTTTAATGCAGAGTGAGAGCAAATGTGCTCTTGTGTATGGTCAGATGAATGAGCCCCCTGGTGCTCGTGCCCGTGTCGGTCTTACTGGACTTACTGTTGCTGAGCATTTCCGTGATGCTGAAGGACAAGATGTGCTGCTTTTTGTTGACAACATTTTCCGCTTTACTCAAGTAAGCACCAAAATTTAAATCATGCACCCAAAACTTACTAATGCAAACTGAACTGTAGATTTTAGTAACAGTTTGTTCACATAACTGCACGCTTACATTCCAAACCGAACTGTGTGCTATTGAACTGTTGGTTATTTAATTTAATATTGTGTTGAACACATGTTCTTTGTGTTTGGTAATTGGCAGCAGCAAGCTTGGTCACTATTTTTTCCGTGTTTGTGTCTGAAACTTGCTACATAGTTTAAATTAAGCATGAAAAATAAATTAAAGCAAGAGTTTAGCCTTTTCTACTTGCTTTTTGCACTCACACTGCCTTAAATTAAGCTCCAAAAATAAATTAAATCTTTAATTTATGTATATATGTTTCTGATAATTAAATTAAATTTTGTTGGTAAAAAATGAGCAAAATTACAATTTTAGTCCCTTAACTTAATTTCAGGTAATGTTTTGGTCCTTTATCCTTTTTTTATTCCATTTTTGTCCTATTGGTTCATCTGCATTTGAATTTTCAAGCTTGAAATCCACGGTTTTCTTTTGCGGCCTTTCAATCTTCAAATATGTGGGTCTTTCATCTATGTTTTTGTATGAATCTTAAATTTTAAGCTTGAAAATCCATATGCAAAAGGACAAACTGCAATGAAAAAAGATAAAGGACCTAACTATTGCCTGAAATTAAGTTAAGGACTAAACGTGCAATTTTGCCTAAAAAATGTAATTCCACTTTTGGTATTTTTTTCACACAGTTTGCTGCAATGGAACAAACCGTGACACCAAATTTTCCTAAAACACGCAATTTATTAGCTCGATAGAATCAGGTTTTTTTCACAATAAGTGATGATGGTTTGACACAGACCATAATAATAGCTATACACAGTTAAATTTTTTAATTTTAGAACTAGTTCGGTAGGGAAGCATAAGAACCACTGGACTGAACATTAAAATAGTTCAATTTGGTTCAAGATTAAACACAAGCAGTTCGATTTGGTTTAGGTAAACTATTTTTTTGGGTTTGGTTCAGTTTTCCATACTAACCAAACCATGAACAACCGTAATGTTTGGTTTTTATGTATGGTTTTTTATAGATGGACGTTGTTCTTATCCTTTTTATCATTGTCTATTTATGTGATGTGATATATGATGCCTGATGTAATTGTAGGCTAACTCAGAGGTGTCTGCCCTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTGTCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATCTATGTGCCTGCTGATGATTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACAGTGTTGTCTAGACAGGTTTGATTATTATGTTACTATTCATTAAACTGAAGTTGAAATCATAATAATTTTTTTTTGTTATCATAGTCAAGAACTAAATGATCTTATTTCGGTATATATTGAAAATAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTCGTATGCTTTCTCCACTTATTTTGGGTGATGAGCACTACCAAACTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAGATATCATTGCTATTCTGGGAATGGATGAGCTTAGTGAAGATGATAAATTGACTGTTGCACGTGCCCGTAAAATTCAACGATTCTTAAGTCAGCCTTTCCACGTGGCAGAAGTCTTCACTGGTGCCCCAGGCAAATATGTTGAGTTGAAGGAGAACACTCAAAGTTTCCAG
Protein sequence

>MS.gene75019.t1

MASRRLVSSLIRSSLRRSSSKPSITASTSRLTSQSRASPYGYLLNRVADYATAAAAAPAPSAPPAKKEVPGGGKITDEFTGKGAVGQVCQVIGAVVDVRFEEGLPPILTALEVLDHSSRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPISVPVGRATLGRIMNVIGEPIDHKGEFKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGDEHYQTARGVQQVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENTQSFQ