Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057554.t1 | XP_003621320.1 | 97.6 | 291 | 7 | 0 | 1 | 291 | 1 | 291 | 1.10E-165 | 592.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057554.t1 | B3QMC9 | 32.9 | 152 | 88 | 7 | 114 | 263 | 11 | 150 | 2.5e-12 | 74.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057554.t1 | G7L348 | 97.6 | 291 | 7 | 0 | 1 | 291 | 1 | 291 | 8.1e-166 | 592.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057554 | MS.gene072699 | 0.817649 | 2.95E-52 | -1.69E-46 |
| MS.gene057554 | MS.gene45220 | 0.859731 | 3.38E-63 | -1.69E-46 |
| MS.gene057554 | MS.gene96220 | 0.809278 | 2.05E-50 | -1.69E-46 |
| MS.gene057554 | MS.gene97608 | 0.801821 | 7.51E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057554.t1 | MTR_7g011850 | 97.595 | 291 | 7 | 0 | 1 | 291 | 1 | 291 | 0.0 | 585 |
| MS.gene057554.t1 | MTR_3g005140 | 44.715 | 246 | 113 | 6 | 54 | 288 | 88 | 321 | 2.62e-56 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057554.t1 | AT3G29240 | 61.093 | 311 | 95 | 7 | 1 | 286 | 1 | 310 | 3.84e-120 | 347 |
| MS.gene057554.t1 | AT3G29240 | 61.093 | 311 | 95 | 7 | 1 | 286 | 1 | 310 | 3.84e-120 | 347 |
| MS.gene057554.t1 | AT1G33780 | 46.552 | 232 | 105 | 4 | 59 | 286 | 95 | 311 | 4.62e-56 | 184 |
| MS.gene057554.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 904 | 1049 | 3.65e-12 | 67.0 |
| MS.gene057554.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 903 | 1048 | 3.93e-12 | 67.0 |
| MS.gene057554.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 694 | 839 | 4.16e-12 | 67.0 |
| MS.gene057554.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 712 | 857 | 4.54e-12 | 67.0 |
Find 83 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATAGTCCTTTGTATTT+TGG | 0.063786 | 7.2:-85453207 | MS.gene057554:CDS |
| ATTAATAAACAACCTCTTTC+GGG | 0.199516 | 7.2:+85453390 | None:intergenic |
| AACAATTGAGAGATGAAATT+AGG | 0.215233 | 7.2:-85452984 | MS.gene057554:CDS |
| ATGTTGGAATTGTTGGGCTC+TGG | 0.270864 | 7.2:-85452909 | MS.gene057554:CDS |
| TTGGGGAATGTTGGAATTGT+TGG | 0.278049 | 7.2:-85452916 | MS.gene057554:CDS |
| ATGAAATTAGGGATGGTTAT+TGG | 0.278275 | 7.2:-85452972 | MS.gene057554:CDS |
| GGACGAAGTTCTCGGGCTTA+TGG | 0.278397 | 7.2:-85452887 | MS.gene057554:CDS |
| TATTAATAAACAACCTCTTT+CGG | 0.280157 | 7.2:+85453389 | None:intergenic |
| TTTCCCACCCCATCATCTTT+AGG | 0.290799 | 7.2:+85453150 | None:intergenic |
| GTGATGAAGGGTTTGTATTA+TGG | 0.321373 | 7.2:-85453108 | MS.gene057554:CDS |
| ACAATTGAGAGATGAAATTA+GGG | 0.325075 | 7.2:-85452983 | MS.gene057554:CDS |
| AGTCCAAGTGTTGTTGATTT+GGG | 0.333914 | 7.2:-85452934 | MS.gene057554:CDS |
| AAGATCGCCAATCGGTGTTA+AGG | 0.343777 | 7.2:+85453547 | None:intergenic |
| TAGTCCAAGTGTTGTTGATT+TGG | 0.347343 | 7.2:-85452935 | MS.gene057554:CDS |
| ATGATACCTGATGGGCCTAT+TGG | 0.347617 | 7.2:+85453300 | None:intergenic |
| TGGGGAATGTTGGAATTGTT+GGG | 0.353274 | 7.2:-85452915 | MS.gene057554:CDS |
| GGGCTCTGGGACGAAGTTCT+CGG | 0.353820 | 7.2:-85452895 | MS.gene057554:CDS |
| GACGAAGTTCTCGGGCTTAT+GGG | 0.359750 | 7.2:-85452886 | MS.gene057554:CDS |
| ATCAACTGCATTTGATGTAA+TGG | 0.365972 | 7.2:-85453238 | MS.gene057554:CDS |
| TAATCACAATTGGTGACAAA+TGG | 0.368700 | 7.2:-85453431 | MS.gene057554:CDS |
| AGTCGCTGAAGAAAGGAATT+CGG | 0.391351 | 7.2:+85453485 | None:intergenic |
| TGATACCTGATGGGCCTATT+GGG | 0.401762 | 7.2:+85453301 | None:intergenic |
| GTCGCTGAAGAAAGGAATTC+GGG | 0.401772 | 7.2:+85453486 | None:intergenic |
| GCGATCTTTCCGTGCAAAAC+TGG | 0.403195 | 7.2:-85453532 | MS.gene057554:CDS |
| TGTTGGAATTGTTGGGCTCT+GGG | 0.418680 | 7.2:-85452908 | MS.gene057554:CDS |
| AACTTACATGATACATGAAA+TGG | 0.420587 | 7.2:+85454371 | None:intergenic |
| CTTTGATGGGTATTGTGGGT+GGG | 0.424635 | 7.2:-85453013 | MS.gene057554:CDS |
| CAATTCAATTCAAGAAAAGT+TGG | 0.426906 | 7.2:-85454398 | MS.gene057554:CDS |
| GGCTCTGGGACGAAGTTCTC+GGG | 0.430974 | 7.2:-85452894 | MS.gene057554:CDS |
| AACAACCTCTTTCGGGCTCA+TGG | 0.431253 | 7.2:+85453397 | None:intergenic |
| TTGGTGAGTCCTAAAGATGA+TGG | 0.434738 | 7.2:-85453159 | MS.gene057554:CDS |
| TTGTTGATGAGAAAATCTTT+TGG | 0.440379 | 7.2:+85454418 | None:intergenic |
| TCAACTGCATTTGATGTAAT+GGG | 0.441472 | 7.2:-85453237 | MS.gene057554:CDS |
| AGATTCTTTGATGGGTATTG+TGG | 0.441919 | 7.2:-85453018 | MS.gene057554:CDS |
| TTGTCACCAATTGTGATTAG+TGG | 0.444671 | 7.2:+85453435 | None:intergenic |
| TGTGGGTCTTGCTGCTGAAA+TGG | 0.445492 | 7.2:-85453073 | MS.gene057554:CDS |
| AGGGTTGGTTTGTCATCATC+CGG | 0.446445 | 7.2:+85453567 | None:intergenic |
| GGATGATTCACAACAGTGTC+TGG | 0.452781 | 7.2:+85453459 | None:intergenic |
| GATTCTTTGATGGGTATTGT+GGG | 0.454997 | 7.2:-85453017 | MS.gene057554:CDS |
| TAGAGATCCACCTCTGATCT+TGG | 0.458828 | 7.2:+85454448 | None:intergenic |
| AGATCGCCAATCGGTGTTAA+GGG | 0.458925 | 7.2:+85453548 | None:intergenic |
| CATCCACCACTAATCACAAT+TGG | 0.467643 | 7.2:-85453441 | MS.gene057554:CDS |
| CGCCAATCGGTGTTAAGGGT+TGG | 0.469028 | 7.2:+85453552 | None:intergenic |
| TTGGGCCATTTGATAAAAGA+AGG | 0.476620 | 7.2:+85453319 | None:intergenic |
| TCTTTGATGGGTATTGTGGG+TGG | 0.484182 | 7.2:-85453014 | MS.gene057554:CDS |
| GTTGTTGATTTGGGGAATGT+TGG | 0.484466 | 7.2:-85452925 | MS.gene057554:CDS |
| AATGGCCCAATAGGCCCATC+AGG | 0.485697 | 7.2:-85453306 | MS.gene057554:CDS |
| AATCACAATTGGTGACAAAT+GGG | 0.489815 | 7.2:-85453430 | MS.gene057554:CDS |
| TAGCAACAGAAAAGCTTGAT+GGG | 0.499250 | 7.2:-85453368 | MS.gene057554:CDS |
| CTGGATCAGTCGCTGAAGAA+AGG | 0.501880 | 7.2:+85453478 | None:intergenic |
| TCACCGTTCGTTCGAAAATG+TGG | 0.503238 | 7.2:+85453343 | None:intergenic |
| TCTTTAATAGACATCAAAGA+TGG | 0.506904 | 7.2:+85453267 | None:intergenic |
| ATAGCAACAGAAAAGCTTGA+TGG | 0.509500 | 7.2:-85453369 | MS.gene057554:CDS |
| TTCTCGGGCTTATGGGCAAA+AGG | 0.513225 | 7.2:-85452879 | MS.gene057554:CDS |
| TGCACGGAAAGATCGCCAAT+CGG | 0.515533 | 7.2:+85453539 | None:intergenic |
| AACCAACCCTTAACACCGAT+TGG | 0.525116 | 7.2:-85453554 | MS.gene057554:CDS |
| TTCCCCAAATCAACAACACT+TGG | 0.527843 | 7.2:+85452931 | None:intergenic |
| AAGAGGAATGTGGTTGAGGT+TGG | 0.532156 | 7.2:-85453048 | MS.gene057554:CDS |
| TTCCGTGCAAAACTGGTGGC+CGG | 0.536600 | 7.2:-85453525 | MS.gene057554:CDS |
| GTAATCCATGAGCCCGAAAG+AGG | 0.546559 | 7.2:-85453402 | MS.gene057554:CDS |
| TGGTGAGTCCTAAAGATGAT+GGG | 0.547996 | 7.2:-85453158 | MS.gene057554:CDS |
| TCACCAATTGTGATTAGTGG+TGG | 0.561176 | 7.2:+85453438 | None:intergenic |
| ATCTTTCCGTGCAAAACTGG+TGG | 0.565955 | 7.2:-85453529 | MS.gene057554:CDS |
| TTGCTGCTGAAATGGTAAAG+AGG | 0.567807 | 7.2:-85453065 | MS.gene057554:CDS |
| CGGGCTTATGGGCAAAAGGA+AGG | 0.575753 | 7.2:-85452875 | MS.gene057554:CDS |
| GGTAAAGAGGAATGTGGTTG+AGG | 0.579733 | 7.2:-85453052 | MS.gene057554:CDS |
| TCCACCTCTGATCTTGGTGA+AGG | 0.588907 | 7.2:+85454454 | None:intergenic |
| TCCTTCACCAAGATCAGAGG+TGG | 0.589140 | 7.2:-85454455 | MS.gene057554:CDS |
| TTGAGAGATGAAATTAGGGA+TGG | 0.595243 | 7.2:-85452979 | MS.gene057554:CDS |
| TTATGGTACTAAAGAAAGTG+TGG | 0.602423 | 7.2:-85453091 | MS.gene057554:CDS |
| CATGTCATCATCATTACCAC+CGG | 0.615316 | 7.2:-85453586 | MS.gene057554:CDS |
| GTCCAAGTGTTGTTGATTTG+GGG | 0.620298 | 7.2:-85452933 | MS.gene057554:CDS |
| TATTGAGTATGATACCTGAT+GGG | 0.622167 | 7.2:+85453292 | None:intergenic |
| TATGGTACTAAAGAAAGTGT+GGG | 0.628740 | 7.2:-85453090 | MS.gene057554:CDS |
| GAGTCCTAAAGATGATGGGG+TGG | 0.634318 | 7.2:-85453154 | MS.gene057554:CDS |
| AGTTCCTTCACCAAGATCAG+AGG | 0.637714 | 7.2:-85454458 | MS.gene057554:CDS |
| CTATTGAGTATGATACCTGA+TGG | 0.644131 | 7.2:+85453291 | None:intergenic |
| AGTCCTAAAGATGATGGGGT+GGG | 0.647626 | 7.2:-85453153 | MS.gene057554:CDS |
| GTTGGTTTGTCATCATCCGG+TGG | 0.661520 | 7.2:+85453570 | None:intergenic |
| AGCAACAGAAAAGCTTGATG+GGG | 0.667622 | 7.2:-85453367 | MS.gene057554:CDS |
| GGTGAGTCCTAAAGATGATG+GGG | 0.678073 | 7.2:-85453157 | MS.gene057554:CDS |
| GGCAAAAGGAAGGTCAAGTG+AGG | 0.692062 | 7.2:-85452865 | None:intergenic |
| TGAAATGGTAAAGAGGAATG+TGG | 0.729562 | 7.2:-85453058 | MS.gene057554:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAAAATATGTGAATT+TGG | - | chr7.2:85453399-85453418 | MS.gene057554:CDS | 10.0% |
| !! | TAAAAAACCAAATTTCTATA+TGG | + | chr7.2:85453529-85453548 | None:intergenic | 15.0% |
| !!! | ATATTGATAATGATACTTTA+GGG | - | chr7.2:85453445-85453464 | MS.gene057554:CDS | 15.0% |
| !!! | TATATTGATAATGATACTTT+AGG | - | chr7.2:85453444-85453463 | MS.gene057554:CDS | 15.0% |
| !! | ATATAATTTAGAAGCTAAGT+TGG | + | chr7.2:85453359-85453378 | None:intergenic | 20.0% |
| !! | TATAATTTAGAAGCTAAGTT+GGG | + | chr7.2:85453358-85453377 | None:intergenic | 20.0% |
| !! | TATTAATAAACAACCTCTTT+CGG | + | chr7.2:85453963-85453982 | None:intergenic | 20.0% |
| !!! | ATTATATTGATTGTACATTC+AGG | - | chr7.2:85453468-85453487 | MS.gene057554:CDS | 20.0% |
| !!! | GAAATTTGGTTTTTTACTAT+TGG | - | chr7.2:85453533-85453552 | MS.gene057554:CDS | 20.0% |
| ! | AAACAATTGTAGTGAAATTG+AGG | - | chr7.2:85453103-85453122 | MS.gene057554:CDS | 25.0% |
| ! | AACAATTGAGAGATGAAATT+AGG | - | chr7.2:85454365-85454384 | MS.gene057554:intron | 25.0% |
| ! | AACTTACATGATACATGAAA+TGG | + | chr7.2:85452981-85453000 | None:intergenic | 25.0% |
| ! | ACAATTGAGAGATGAAATTA+GGG | - | chr7.2:85454366-85454385 | MS.gene057554:intron | 25.0% |
| ! | ATAATTTAGAAGCTAAGTTG+GGG | + | chr7.2:85453357-85453376 | None:intergenic | 25.0% |
| ! | ATTAATAAACAACCTCTTTC+GGG | + | chr7.2:85453962-85453981 | None:intergenic | 25.0% |
| ! | CAATTCAATTCAAGAAAAGT+TGG | - | chr7.2:85452951-85452970 | MS.gene057554:CDS | 25.0% |
| ! | TCTTTAATAGACATCAAAGA+TGG | + | chr7.2:85454085-85454104 | None:intergenic | 25.0% |
| ! | TGTTGTACCATATAGAAATT+TGG | - | chr7.2:85453519-85453538 | MS.gene057554:CDS | 25.0% |
| !! | CTAATAGTCCTTTGTATTTT+GGG | - | chr7.2:85454143-85454162 | MS.gene057554:intron | 25.0% |
| !! | GTGATTTTAGATTCTTTGAT+GGG | - | chr7.2:85454323-85454342 | MS.gene057554:intron | 25.0% |
| !! | TAATAGTCCTTTGTATTTTG+GGG | - | chr7.2:85454144-85454163 | MS.gene057554:intron | 25.0% |
| !! | TCTAATAGTCCTTTGTATTT+TGG | - | chr7.2:85454142-85454161 | MS.gene057554:intron | 25.0% |
| !!! | TTGTTGATGAGAAAATCTTT+TGG | + | chr7.2:85452934-85452953 | None:intergenic | 25.0% |
| AAAAACAACCCTTCTTCTAA+AGG | + | chr7.2:85454172-85454191 | None:intergenic | 30.0% | |
| ATCAACTGCATTTGATGTAA+TGG | - | chr7.2:85454111-85454130 | MS.gene057554:intron | 30.0% | |
| ATCTTGATCATAGTGTAAGT+AGG | + | chr7.2:85453013-85453032 | None:intergenic | 30.0% | |
| ATGAAATTAGGGATGGTTAT+TGG | - | chr7.2:85454377-85454396 | MS.gene057554:intron | 30.0% | |
| TATTGAGTATGATACCTGAT+GGG | + | chr7.2:85454060-85454079 | None:intergenic | 30.0% | |
| TCAACTGCATTTGATGTAAT+GGG | - | chr7.2:85454112-85454131 | MS.gene057554:intron | 30.0% | |
| TTATGGTACTAAAGAAAGTG+TGG | - | chr7.2:85454258-85454277 | MS.gene057554:intron | 30.0% | |
| ! | AATCACAATTGGTGACAAAT+GGG | - | chr7.2:85453919-85453938 | MS.gene057554:intron | 30.0% |
| ! | GGTGATTTTAGATTCTTTGA+TGG | - | chr7.2:85454322-85454341 | MS.gene057554:intron | 30.0% |
| ! | GTGATCCTTCTTTTATCAAA+TGG | - | chr7.2:85454025-85454044 | MS.gene057554:intron | 30.0% |
| ! | GTTTTTGATGAAGTGATGAA+GGG | - | chr7.2:85454229-85454248 | MS.gene057554:intron | 30.0% |
| ! | TAATCACAATTGGTGACAAA+TGG | - | chr7.2:85453918-85453937 | MS.gene057554:intron | 30.0% |
| ! | TAATTTAGAAGCTAAGTTGG+GGG | + | chr7.2:85453356-85453375 | None:intergenic | 30.0% |
| ! | TATGGTACTAAAGAAAGTGT+GGG | - | chr7.2:85454259-85454278 | MS.gene057554:intron | 30.0% |
| ! | TTTTCACCATCTATAAGTCT+CGG | + | chr7.2:85453594-85453613 | None:intergenic | 30.0% |
| !! | AATAGTCCTTTGTATTTTGG+GGG | - | chr7.2:85454145-85454164 | MS.gene057554:intron | 30.0% |
| !! | TGTTTTTGATGAAGTGATGA+AGG | - | chr7.2:85454228-85454247 | MS.gene057554:intron | 30.0% |
| !! | TTTAGAAGAAGGGTTGTTTT+TGG | - | chr7.2:85454171-85454190 | MS.gene057554:intron | 30.0% |
| !!! | TGAGAAAATCTTTTGGAGTA+AGG | + | chr7.2:85452927-85452946 | None:intergenic | 30.0% |
| ATAGCAACAGAAAAGCTTGA+TGG | - | chr7.2:85453980-85453999 | MS.gene057554:intron | 35.0% | |
| ATGCTGATATGTTCTCAAGA+TGG | - | chr7.2:85453177-85453196 | MS.gene057554:CDS | 35.0% | |
| CTATTGAGTATGATACCTGA+TGG | + | chr7.2:85454061-85454080 | None:intergenic | 35.0% | |
| GTGATGAAGGGTTTGTATTA+TGG | - | chr7.2:85454241-85454260 | MS.gene057554:intron | 35.0% | |
| TAGCAACAGAAAAGCTTGAT+GGG | - | chr7.2:85453981-85454000 | MS.gene057554:intron | 35.0% | |
| TGAAATGGTAAAGAGGAATG+TGG | - | chr7.2:85454291-85454310 | MS.gene057554:intron | 35.0% | |
| TTGAGAGATGAAATTAGGGA+TGG | - | chr7.2:85454370-85454389 | MS.gene057554:intron | 35.0% | |
| TTGGGCCATTTGATAAAAGA+AGG | + | chr7.2:85454033-85454052 | None:intergenic | 35.0% | |
| TTGTCACCAATTGTGATTAG+TGG | + | chr7.2:85453917-85453936 | None:intergenic | 35.0% | |
| ! | AGATTCTTTGATGGGTATTG+TGG | - | chr7.2:85454331-85454350 | MS.gene057554:intron | 35.0% |
| ! | ATCTTTTGTGATCAAACCAC+AGG | - | chr7.2:85453734-85453753 | MS.gene057554:intron | 35.0% |
| ! | CTTTTATCAAATGGCCCAAT+AGG | - | chr7.2:85454034-85454053 | MS.gene057554:intron | 35.0% |
| ! | GATTCTTTGATGGGTATTGT+GGG | - | chr7.2:85454332-85454351 | MS.gene057554:intron | 35.0% |
| ! | TAGTCCAAGTGTTGTTGATT+TGG | - | chr7.2:85454414-85454433 | MS.gene057554:CDS | 35.0% |
| !! | AGTCCAAGTGTTGTTGATTT+GGG | - | chr7.2:85454415-85454434 | MS.gene057554:CDS | 35.0% |
| !! | GGGTTTTAGTAATTGTTCTC+CGG | + | chr7.2:85453846-85453865 | None:intergenic | 35.0% |
| AAAGGTCCCCCAAAATACAA+AGG | + | chr7.2:85454154-85454173 | None:intergenic | 40.0% | |
| AGCAACAGAAAAGCTTGATG+GGG | - | chr7.2:85453982-85454001 | MS.gene057554:intron | 40.0% | |
| AGTCGCTGAAGAAAGGAATT+CGG | + | chr7.2:85453867-85453886 | None:intergenic | 40.0% | |
| CATCCACCACTAATCACAAT+TGG | - | chr7.2:85453908-85453927 | MS.gene057554:intron | 40.0% | |
| CATGTCATCATCATTACCAC+CGG | - | chr7.2:85453763-85453782 | MS.gene057554:intron | 40.0% | |
| TCACCAATTGTGATTAGTGG+TGG | + | chr7.2:85453914-85453933 | None:intergenic | 40.0% | |
| TGGGGAATGTTGGAATTGTT+GGG | - | chr7.2:85454434-85454453 | MS.gene057554:CDS | 40.0% | |
| TGGTGAGTCCTAAAGATGAT+GGG | - | chr7.2:85454191-85454210 | MS.gene057554:intron | 40.0% | |
| TTCCCCAAATCAACAACACT+TGG | + | chr7.2:85454421-85454440 | None:intergenic | 40.0% | |
| TTGCTGCTGAAATGGTAAAG+AGG | - | chr7.2:85454284-85454303 | MS.gene057554:intron | 40.0% | |
| TTGGGGAATGTTGGAATTGT+TGG | - | chr7.2:85454433-85454452 | MS.gene057554:CDS | 40.0% | |
| TTGGTGAGTCCTAAAGATGA+TGG | - | chr7.2:85454190-85454209 | MS.gene057554:intron | 40.0% | |
| !! | GTCCAAGTGTTGTTGATTTG+GGG | - | chr7.2:85454416-85454435 | MS.gene057554:CDS | 40.0% |
| !! | GTTGTTGATTTGGGGAATGT+TGG | - | chr7.2:85454424-85454443 | MS.gene057554:CDS | 40.0% |
| AACCAACCCTTAACACCGAT+TGG | - | chr7.2:85453795-85453814 | MS.gene057554:intron | 45.0% | |
| AAGAGGAATGTGGTTGAGGT+TGG | - | chr7.2:85454301-85454320 | MS.gene057554:intron | 45.0% | |
| AGTTCCTTCACCAAGATCAG+AGG | - | chr7.2:85452891-85452910 | MS.gene057554:CDS | 45.0% | |
| ATCTTTCCGTGCAAAACTGG+TGG | - | chr7.2:85453820-85453839 | MS.gene057554:intron | 45.0% | |
| ATGTTGGAATTGTTGGGCTC+TGG | - | chr7.2:85454440-85454459 | MS.gene057554:CDS | 45.0% | |
| GGATGATTCACAACAGTGTC+TGG | + | chr7.2:85453893-85453912 | None:intergenic | 45.0% | |
| GGTAAAGAGGAATGTGGTTG+AGG | - | chr7.2:85454297-85454316 | MS.gene057554:intron | 45.0% | |
| GGTGAGTCCTAAAGATGATG+GGG | - | chr7.2:85454192-85454211 | MS.gene057554:intron | 45.0% | |
| GTCGCTGAAGAAAGGAATTC+GGG | + | chr7.2:85453866-85453885 | None:intergenic | 45.0% | |
| TAGAGATCCACCTCTGATCT+TGG | + | chr7.2:85452904-85452923 | None:intergenic | 45.0% | |
| TCAACGCCGAGACTTATAGA+TGG | - | chr7.2:85453585-85453604 | MS.gene057554:CDS | 45.0% | |
| TCACCGTTCGTTCGAAAATG+TGG | + | chr7.2:85454009-85454028 | None:intergenic | 45.0% | |
| TGATGACATGTTGCAACCTG+TGG | + | chr7.2:85453753-85453772 | None:intergenic | 45.0% | |
| TGTTGGAATTGTTGGGCTCT+GGG | - | chr7.2:85454441-85454460 | MS.gene057554:CDS | 45.0% | |
| TTTCCCACCCCATCATCTTT+AGG | + | chr7.2:85454202-85454221 | None:intergenic | 45.0% | |
| ! | ATGATACCTGATGGGCCTAT+TGG | + | chr7.2:85454052-85454071 | None:intergenic | 45.0% |
| ! | CTTTGATGGGTATTGTGGGT+GGG | - | chr7.2:85454336-85454355 | MS.gene057554:intron | 45.0% |
| ! | GGTCCACATTTTCGAACGAA+CGG | - | chr7.2:85454003-85454022 | MS.gene057554:intron | 45.0% |
| ! | TCTTTGATGGGTATTGTGGG+TGG | - | chr7.2:85454335-85454354 | MS.gene057554:intron | 45.0% |
| ! | TGATACCTGATGGGCCTATT+GGG | + | chr7.2:85454051-85454070 | None:intergenic | 45.0% |
| ! | TTGGGGGACCTTTAGAAGAA+GGG | - | chr7.2:85454161-85454180 | MS.gene057554:intron | 45.0% |
| ! | TTTGGGGGACCTTTAGAAGA+AGG | - | chr7.2:85454160-85454179 | MS.gene057554:intron | 45.0% |
| !! | AAGATCGCCAATCGGTGTTA+AGG | + | chr7.2:85453805-85453824 | None:intergenic | 45.0% |
| !! | AGATCGCCAATCGGTGTTAA+GGG | + | chr7.2:85453804-85453823 | None:intergenic | 45.0% |
| !! | AGGGTTGGTTTGTCATCATC+CGG | + | chr7.2:85453785-85453804 | None:intergenic | 45.0% |
| !! | AGTCCTAAAGATGATGGGGT+GGG | - | chr7.2:85454196-85454215 | MS.gene057554:intron | 45.0% |
| AACAACCTCTTTCGGGCTCA+TGG | + | chr7.2:85453955-85453974 | None:intergenic | 50.0% | |
| CTGGATCAGTCGCTGAAGAA+AGG | + | chr7.2:85453874-85453893 | None:intergenic | 50.0% | |
| GACGAAGTTCTCGGGCTTAT+GGG | - | chr7.2:85454463-85454482 | MS.gene057554:CDS | 50.0% | |
| GCGATCTTTCCGTGCAAAAC+TGG | - | chr7.2:85453817-85453836 | MS.gene057554:intron | 50.0% | |
| GTAATCCATGAGCCCGAAAG+AGG | - | chr7.2:85453947-85453966 | MS.gene057554:intron | 50.0% | |
| TCCACCTCTGATCTTGGTGA+AGG | + | chr7.2:85452898-85452917 | None:intergenic | 50.0% | |
| TCCTTCACCAAGATCAGAGG+TGG | - | chr7.2:85452894-85452913 | MS.gene057554:CDS | 50.0% | |
| TGCACGGAAAGATCGCCAAT+CGG | + | chr7.2:85453813-85453832 | None:intergenic | 50.0% | |
| TGTGGGTCTTGCTGCTGAAA+TGG | - | chr7.2:85454276-85454295 | MS.gene057554:intron | 50.0% | |
| TTCTCGGGCTTATGGGCAAA+AGG | - | chr7.2:85454470-85454489 | MS.gene057554:CDS | 50.0% | |
| !! | GAGTCCTAAAGATGATGGGG+TGG | - | chr7.2:85454195-85454214 | MS.gene057554:intron | 50.0% |
| !! | GATGATGGGGTGGGAAAAAG+TGG | - | chr7.2:85454205-85454224 | MS.gene057554:intron | 50.0% |
| !! | GTTGGTTTGTCATCATCCGG+TGG | + | chr7.2:85453782-85453801 | None:intergenic | 50.0% |
| AATGGCCCAATAGGCCCATC+AGG | - | chr7.2:85454043-85454062 | MS.gene057554:intron | 55.0% | |
| CGGGCTTATGGGCAAAAGGA+AGG | - | chr7.2:85454474-85454493 | MS.gene057554:CDS | 55.0% | |
| GGACGAAGTTCTCGGGCTTA+TGG | - | chr7.2:85454462-85454481 | MS.gene057554:CDS | 55.0% | |
| TTCCGTGCAAAACTGGTGGC+CGG | - | chr7.2:85453824-85453843 | MS.gene057554:intron | 55.0% | |
| !! | CGCCAATCGGTGTTAAGGGT+TGG | + | chr7.2:85453800-85453819 | None:intergenic | 55.0% |
| ! | CTCCGGCCACCAGTTTTGCA+CGG | + | chr7.2:85453829-85453848 | None:intergenic | 60.0% |
| !! | GGCTCTGGGACGAAGTTCTC+GGG | - | chr7.2:85454455-85454474 | MS.gene057554:CDS | 60.0% |
| !! | GGGCTCTGGGACGAAGTTCT+CGG | - | chr7.2:85454454-85454473 | MS.gene057554:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 85452867 | 85454504 | 85452867 | ID=MS.gene057554 |
| chr7.2 | mRNA | 85452867 | 85454504 | 85452867 | ID=MS.gene057554.t1;Parent=MS.gene057554 |
| chr7.2 | exon | 85454378 | 85454504 | 85454378 | ID=MS.gene057554.t1.exon1;Parent=MS.gene057554.t1 |
| chr7.2 | CDS | 85454378 | 85454504 | 85454378 | ID=cds.MS.gene057554.t1;Parent=MS.gene057554.t1 |
| chr7.2 | exon | 85452867 | 85453615 | 85452867 | ID=MS.gene057554.t1.exon2;Parent=MS.gene057554.t1 |
| chr7.2 | CDS | 85452867 | 85453615 | 85452867 | ID=cds.MS.gene057554.t1;Parent=MS.gene057554.t1 |
| Gene Sequence |
| Protein sequence |
