AlfalfaGEDB | MS.gene072699

M. sativa cultivar XinJiangDaYe / MS.gene072699

KEGG: -
GO: -
PFAM: PF02672.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072699.t1	XP_003625969.1	96.1	127	4	1	1	126	1	127	2.30E-59	238

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072699.t1	Q9LZP9	59.4	133	46	5	1	127	1	131	1.1e-30	134.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072699.t1	G7KST6	96.1	127	4	1	1	126	1	127	1.7e-59	238.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055277	MS.gene072699	0.802777	4.78E-49	-1.69E-46
MS.gene057554	MS.gene072699	0.817649	2.95E-52	-1.69E-46
MS.gene058365	MS.gene072699	0.801177	1.02E-48	-1.69E-46
MS.gene059894	MS.gene072699	0.807224	5.61E-50	-1.69E-46
MS.gene061049	MS.gene072699	0.800476	1.42E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072699.t1	MTR_7g109520	95.312	128	5	1	1	127	1	128	3.79e-87	249
MS.gene072699.t1	MTR_1g087030	64.615	130	41	3	2	127	3	131	5.61e-54	166

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072699.t1	AT3G62410	59.398	133	46	5	1	127	1	131	4.33e-45	143
MS.gene072699.t1	AT2G47400	68.041	97	27	2	33	127	30	124	4.23e-40	130
MS.gene072699.t1	AT1G76560	47.297	74	37	1	56	127	61	134	5.85e-19	77.0

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Find 41 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACCACTGCAGACACGGT+GGG	0.598529	7.3:+5457118	MS.gene072699:CDS
AAGCTTCTCTTCAACTCATC+AGG	0.395970	7.3:+5457065	MS.gene072699:CDS
ACACCACTGCAGACACGGTG+GGG	0.612423	7.3:+5457119	MS.gene072699:CDS
ACACCCCACCGTGTCTGCAG+TGG	0.598200	7.3:-5457122	None:intergenic
ACCAGAACAGATATCAAAGA+AGG	0.574036	7.3:+5457190	MS.gene072699:CDS
ACCTTCTTTGATATCTGTTC+TGG	0.263996	7.3:-5457191	None:intergenic
AGAGAAGCTTGGGGTTTGAA+AGG	0.525586	7.3:-5457052	None:intergenic
AGAGACATGTGCTGATGACC+CGG	0.581174	7.3:+5457238	MS.gene072699:CDS
AGCCGGATCAGGTCGAATGA+TGG	0.587328	7.3:+5457145	MS.gene072699:CDS
AGCGGCATGGGACGAAGTGG+AGG	0.586526	7.3:+5457277	MS.gene072699:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCAGAACAGATATCAAAGA+AGG	+	chr7.3:5457190-5457209	MS.gene072699:CDS	35.0%
ACCTTCTTTGATATCTGTTC+TGG	-	chr7.3:5457194-5457213	None:intergenic	35.0%
AAGCTTCTCTTCAACTCATC+AGG	+	chr7.3:5457065-5457084	MS.gene072699:CDS	40.0%
GAAGAAGGATTCTGATCCAT+TGG	+	chr7.3:5457334-5457353	MS.gene072699:CDS	40.0%
TCCATTGGAGGATTACTGTA+AGG	+	chr7.3:5457349-5457368	MS.gene072699:CDS	40.0%
TCCTTACAGTAATCCTCCAA+TGG	-	chr7.3:5457353-5457372	None:intergenic	40.0%
AGAGAAGCTTGGGGTTTGAA+AGG	-	chr7.3:5457055-5457074	None:intergenic	45.0%
GAAGGATTCTGATCCATTGG+AGG	+	chr7.3:5457337-5457356	MS.gene072699:CDS	45.0%
TCATGCAAGGGATAGGAAGA+AGG	+	chr7.3:5457319-5457338	MS.gene072699:CDS	45.0%
CAACAACACCACTGCAGACA+CGG	+	chr7.3:5457114-5457133	MS.gene072699:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	5457029	5457412	5457029	ID=MS.gene072699
chr7.3	mRNA	5457029	5457412	5457029	ID=MS.gene072699.t1;Parent=MS.gene072699
chr7.3	exon	5457029	5457412	5457029	ID=MS.gene072699.t1.exon1;Parent=MS.gene072699.t1
chr7.3	CDS	5457029	5457412	5457029	ID=cds.MS.gene072699.t1;Parent=MS.gene072699.t1

Gene Sequence

>MS.gene072699

ATGGCAACAATAGGTGGTCTCAGCCTTTCAAACCCCAAGCTTCTCTTCAACTCATCAGGATTTCCACAAACCATCAAGATCTCACCAACAACACCACTGCAGACACGGTGGGGTGTAGCCGGATCAGGTCGAATGATGGTGGTTCGACCAGTTCATGCTGCACCAGAACAGATATCAAAGAAGGTAGAAGAAAGCATTAAGAGTGCGCAAGAGACATGTGCTGATGACCCGGTTAGTGGAGAATGCGTAGCGGCATGGGACGAAGTGGAGGAACTCAGTGCTGCGGCGAGTCATGCAAGGGATAGGAAGAAGGATTCTGATCCATTGGAGGATTACTGTAAGGATAACCCTGAGACTGATGAGTGCAAAACTTATGATAACTGA

Protein sequence

>MS.gene072699.t1

MATIGGLSLSNPKLLFNSSGFPQTIKISPTTPLQTRWGVAGSGRMMVVRPVHAAPEQISKKVEESIKSAQETCADDPVSGECVAAWDEVEELSAAASHARDRKKDSDPLEDYCKDNPETDECKTYDN