Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97608.t1 | XP_003621320.1 | 96.2 | 291 | 11 | 0 | 1 | 291 | 1 | 291 | 8.90E-163 | 582.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97608.t1 | B3QMC9 | 33.6 | 152 | 87 | 7 | 114 | 263 | 11 | 150 | 2.9e-13 | 77.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97608.t1 | G7L348 | 96.2 | 291 | 11 | 0 | 1 | 291 | 1 | 291 | 6.4e-163 | 582.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050406 | MS.gene97608 | 0.81289 | 3.38E-51 | -1.69E-46 |
| MS.gene051471 | MS.gene97608 | 0.828023 | 1.13E-54 | -1.69E-46 |
| MS.gene053073 | MS.gene97608 | 0.837229 | 5.88E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene97608 | 0.809257 | 2.07E-50 | -1.69E-46 |
| MS.gene053928 | MS.gene97608 | 0.813249 | 2.82E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene97608 | 0.807225 | 5.61E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene97608 | 0.823273 | 1.51E-53 | -1.69E-46 |
| MS.gene055428 | MS.gene97608 | 0.802326 | 5.92E-49 | -1.69E-46 |
| MS.gene055712 | MS.gene97608 | 0.835664 | 1.47E-56 | -1.69E-46 |
| MS.gene05702 | MS.gene97608 | 0.821665 | 3.58E-53 | -1.69E-46 |
| MS.gene057554 | MS.gene97608 | 0.801821 | 7.51E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene97608 | 0.832113 | 1.14E-55 | -1.69E-46 |
| MS.gene059899 | MS.gene97608 | 0.807894 | 4.04E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene97608 | 0.812355 | 4.42E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene97608 | 0.819959 | 8.83E-53 | -1.69E-46 |
| MS.gene061112 | MS.gene97608 | 0.829471 | 5.05E-55 | -1.69E-46 |
| MS.gene061265 | MS.gene97608 | 0.82455 | 7.60E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97608.t1 | MTR_7g011850 | 97.938 | 291 | 6 | 0 | 1 | 291 | 1 | 291 | 0.0 | 589 |
| MS.gene97608.t1 | MTR_3g005140 | 44.939 | 247 | 121 | 7 | 49 | 288 | 83 | 321 | 5.40e-57 | 186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97608.t1 | AT3G29240 | 62.300 | 313 | 88 | 8 | 1 | 286 | 1 | 310 | 7.22e-121 | 349 |
| MS.gene97608.t1 | AT3G29240 | 62.300 | 313 | 88 | 8 | 1 | 286 | 1 | 310 | 7.22e-121 | 349 |
| MS.gene97608.t1 | AT1G33780 | 46.552 | 232 | 105 | 4 | 59 | 286 | 95 | 311 | 1.85e-56 | 185 |
| MS.gene97608.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 904 | 1049 | 5.47e-12 | 66.6 |
| MS.gene97608.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 903 | 1048 | 5.67e-12 | 66.6 |
| MS.gene97608.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 712 | 857 | 5.82e-12 | 66.6 |
| MS.gene97608.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 694 | 839 | 6.70e-12 | 66.2 |
Find 81 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATAGTCCTTTGTATTT+TGG | 0.063786 | 7.4:-87501227 | MS.gene97608:CDS |
| ATTAATAAACAACCTCTTTC+AGG | 0.170100 | 7.4:+87501410 | None:intergenic |
| AACAATTGAGAGATGAAATT+AGG | 0.215233 | 7.4:-87501004 | MS.gene97608:CDS |
| GTAATGAAGGGTTTGTATTA+TGG | 0.269355 | 7.4:-87501128 | MS.gene97608:CDS |
| ATGTTGGAATTGTTGGGCTC+TGG | 0.270864 | 7.4:-87500929 | MS.gene97608:CDS |
| TTGGGGAATGTTGGAATTGT+TGG | 0.278049 | 7.4:-87500936 | MS.gene97608:CDS |
| ATGAAATTAGGGATGGTTAT+TGG | 0.278275 | 7.4:-87500992 | MS.gene97608:CDS |
| GGACGAAGTTCTCGGGCTTA+TGG | 0.278397 | 7.4:-87500907 | MS.gene97608:CDS |
| TTTCCCACCACATCATCTTT+TGG | 0.289279 | 7.4:+87501170 | None:intergenic |
| ACAATTGAGAGATGAAATTA+GGG | 0.325075 | 7.4:-87501003 | MS.gene97608:CDS |
| AGTCCAAGTGTTGTTGATTT+GGG | 0.333914 | 7.4:-87500954 | MS.gene97608:CDS |
| ATGATCCCTGATGGGCCTAT+TGG | 0.337536 | 7.4:+87501320 | None:intergenic |
| AAGATCGCCAATCGGTGTTA+AGG | 0.343777 | 7.4:+87501567 | None:intergenic |
| TAGTCCAAGTGTTGTTGATT+TGG | 0.347343 | 7.4:-87500955 | MS.gene97608:CDS |
| TGATCTTGGTGAAAGAACTA+TGG | 0.347700 | 7.4:+87502490 | None:intergenic |
| TGGGGAATGTTGGAATTGTT+GGG | 0.353274 | 7.4:-87500935 | MS.gene97608:CDS |
| GGGCTCTGGGACGAAGTTCT+CGG | 0.353820 | 7.4:-87500915 | MS.gene97608:CDS |
| GACGAAGTTCTCGGGCTTAT+GGG | 0.359750 | 7.4:-87500906 | MS.gene97608:CDS |
| TAATCACAATTGGTGACAAA+TGG | 0.368700 | 7.4:-87501451 | MS.gene97608:CDS |
| ATCAACCGCATTTGATGTAA+TGG | 0.381650 | 7.4:-87501258 | MS.gene97608:CDS |
| AGTCGCTGAAGAAAGGAATT+CGG | 0.391351 | 7.4:+87501505 | None:intergenic |
| GTCGCTGAAGAAAGGAATTC+GGG | 0.401772 | 7.4:+87501506 | None:intergenic |
| AACGGCCCAATAGGCCCATC+AGG | 0.402546 | 7.4:-87501326 | MS.gene97608:CDS |
| GCGATCTTTCCGTGCAAAAC+TGG | 0.403195 | 7.4:-87501552 | MS.gene97608:CDS |
| TGATCCCTGATGGGCCTATT+GGG | 0.409481 | 7.4:+87501321 | None:intergenic |
| TGTTGGAATTGTTGGGCTCT+GGG | 0.418680 | 7.4:-87500928 | MS.gene97608:CDS |
| AACTTACATGATACATGAAA+TGG | 0.420587 | 7.4:+87502399 | None:intergenic |
| CTTTGATGGGTATTGTGGGT+GGG | 0.424635 | 7.4:-87501033 | MS.gene97608:CDS |
| CAATTCAATTCAAGAAAAGT+TGG | 0.426906 | 7.4:-87502426 | MS.gene97608:CDS |
| AACAACCTCTTTCAGGCTCA+TGG | 0.428547 | 7.4:+87501417 | None:intergenic |
| GGCTCTGGGACGAAGTTCTC+GGG | 0.430974 | 7.4:-87500914 | MS.gene97608:CDS |
| TTGTTGATGAGAAAATCTTT+TGG | 0.440379 | 7.4:+87502446 | None:intergenic |
| AGATTCTTTGATGGGTATTG+TGG | 0.441919 | 7.4:-87501038 | MS.gene97608:CDS |
| TGTGGGTCTTGCTGCTGAAA+TGG | 0.442545 | 7.4:-87501093 | MS.gene97608:CDS |
| TTGTCACCAATTGTGATTAG+TGG | 0.444671 | 7.4:+87501455 | None:intergenic |
| AGGGTTGGTTTGTCATCATC+CGG | 0.446445 | 7.4:+87501587 | None:intergenic |
| GGATGATTCACAACAGTGTC+TGG | 0.452781 | 7.4:+87501479 | None:intergenic |
| GATTCTTTGATGGGTATTGT+GGG | 0.454997 | 7.4:-87501037 | MS.gene97608:CDS |
| AGATCGCCAATCGGTGTTAA+GGG | 0.458925 | 7.4:+87501568 | None:intergenic |
| CATCCACCACTAATCACAAT+TGG | 0.467643 | 7.4:-87501461 | MS.gene97608:CDS |
| CGCCAATCGGTGTTAAGGGT+TGG | 0.469028 | 7.4:+87501572 | None:intergenic |
| TCAACCGCATTTGATGTAAT+GGG | 0.481955 | 7.4:-87501257 | MS.gene97608:CDS |
| TCTTTGATGGGTATTGTGGG+TGG | 0.484182 | 7.4:-87501034 | MS.gene97608:CDS |
| GTTGTTGATTTGGGGAATGT+TGG | 0.484466 | 7.4:-87500945 | MS.gene97608:CDS |
| TAGAGATCCAGCTCTGATCT+TGG | 0.485876 | 7.4:+87502476 | None:intergenic |
| TTGGGCCGTTTGATAAAAGA+AGG | 0.489401 | 7.4:+87501339 | None:intergenic |
| AATCACAATTGGTGACAAAT+GGG | 0.489815 | 7.4:-87501450 | MS.gene97608:CDS |
| TCTTTCACCAAGATCAGAGC+TGG | 0.498810 | 7.4:-87502483 | MS.gene97608:CDS |
| TAGCAACAGAAAAGCTTGAT+GGG | 0.501175 | 7.4:-87501388 | MS.gene97608:CDS |
| CTGGATCAGTCGCTGAAGAA+AGG | 0.501880 | 7.4:+87501498 | None:intergenic |
| ATAGCAACAGAAAAGCTTGA+TGG | 0.509500 | 7.4:-87501389 | MS.gene97608:CDS |
| TTCTCGGGCTTATGGGCAAA+AGG | 0.513225 | 7.4:-87500899 | MS.gene97608:CDS |
| TGCACGGAAAGATCGCCAAT+CGG | 0.515533 | 7.4:+87501559 | None:intergenic |
| TCTTTGATAGACATCAAAGA+TGG | 0.519470 | 7.4:+87501287 | None:intergenic |
| AACCAACCCTTAACACCGAT+TGG | 0.525116 | 7.4:-87501574 | MS.gene97608:CDS |
| AAGAGGAATGTGGTTGAGGT+TGG | 0.527418 | 7.4:-87501068 | MS.gene97608:CDS |
| TTCCCCAAATCAACAACACT+TGG | 0.527843 | 7.4:+87500951 | None:intergenic |
| GATCTTGGTGAAAGAACTAT+GGG | 0.534324 | 7.4:+87502491 | None:intergenic |
| TTCCGTGCAAAACTGGTGGC+CGG | 0.536600 | 7.4:-87501545 | MS.gene97608:CDS |
| GGTGAAGAGGAATGTGGTTG+AGG | 0.554685 | 7.4:-87501072 | MS.gene97608:CDS |
| TCACCAATTGTGATTAGTGG+TGG | 0.561176 | 7.4:+87501458 | None:intergenic |
| CTATTGAGTATGATCCCTGA+TGG | 0.565216 | 7.4:+87501311 | None:intergenic |
| ATCTTTCCGTGCAAAACTGG+TGG | 0.565955 | 7.4:-87501549 | MS.gene97608:CDS |
| GTAATCCATGAGCCTGAAAG+AGG | 0.568190 | 7.4:-87501422 | MS.gene97608:CDS |
| CGGGCTTATGGGCAAAAGGA+AGG | 0.575753 | 7.4:-87500895 | MS.gene97608:CDS |
| TATTGAGTATGATCCCTGAT+GGG | 0.580509 | 7.4:+87501312 | None:intergenic |
| TTGAGAGATGAAATTAGGGA+TGG | 0.595243 | 7.4:-87500999 | MS.gene97608:CDS |
| TTATGGTACTAAAGAAAGTG+TGG | 0.602423 | 7.4:-87501111 | MS.gene97608:CDS |
| TTGCTGCTGAAATGGTGAAG+AGG | 0.609923 | 7.4:-87501085 | MS.gene97608:CDS |
| CATGTCATCATCATCACCAC+CGG | 0.618724 | 7.4:-87501606 | MS.gene97608:CDS |
| GTCCAAGTGTTGTTGATTTG+GGG | 0.620298 | 7.4:-87500953 | MS.gene97608:CDS |
| TATGGTACTAAAGAAAGTGT+GGG | 0.628740 | 7.4:-87501110 | MS.gene97608:CDS |
| GTTGGTTTGTCATCATCCGG+TGG | 0.639856 | 7.4:+87501590 | None:intergenic |
| ACGGCCCAATAGGCCCATCA+GGG | 0.647590 | 7.4:-87501325 | MS.gene97608:CDS |
| AGCAACAGAAAAGCTTGATG+GGG | 0.650228 | 7.4:-87501387 | MS.gene97608:CDS |
| GGTGAGTCCAAAAGATGATG+TGG | 0.665219 | 7.4:-87501177 | MS.gene97608:CDS |
| GAGTCCAAAAGATGATGTGG+TGG | 0.665713 | 7.4:-87501174 | MS.gene97608:CDS |
| AGTACCCATTACATCAAATG+CGG | 0.679472 | 7.4:+87501253 | None:intergenic |
| GGCAAAAGGAAGGTCAAGTG+AGG | 0.692062 | 7.4:-87500885 | None:intergenic |
| AGTCCAAAAGATGATGTGGT+GGG | 0.719657 | 7.4:-87501173 | MS.gene97608:CDS |
| TGAAATGGTGAAGAGGAATG+TGG | 0.729338 | 7.4:-87501078 | MS.gene97608:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAAAATATGTGAATT+TGG | - | chr7.4:87501419-87501438 | MS.gene97608:CDS | 10.0% |
| !!! | ATATTGATAATGATACTTTA+GGG | - | chr7.4:87501474-87501493 | MS.gene97608:CDS | 15.0% |
| !!! | TATATTGATAATGATACTTT+AGG | - | chr7.4:87501473-87501492 | MS.gene97608:CDS | 15.0% |
| !! | ATATAATTTAGAAGCTAAGT+TGG | + | chr7.4:87501379-87501398 | None:intergenic | 20.0% |
| !! | TAAAAAACCGAATTTCTATA+TGG | + | chr7.4:87501558-87501577 | None:intergenic | 20.0% |
| !! | TATAATTTAGAAGCTAAGTT+GGG | + | chr7.4:87501378-87501397 | None:intergenic | 20.0% |
| !!! | ATTATATTGATTGTACATTC+AGG | - | chr7.4:87501497-87501516 | MS.gene97608:CDS | 20.0% |
| ! | AAACAATTGTAGTGAAATAG+AGG | - | chr7.4:87501123-87501142 | MS.gene97608:CDS | 25.0% |
| ! | AACAATTGAGAGATGAAATT+AGG | - | chr7.4:87502393-87502412 | MS.gene97608:intron | 25.0% |
| ! | AACTTACATGATACATGAAA+TGG | + | chr7.4:87501001-87501020 | None:intergenic | 25.0% |
| ! | ACAATTGAGAGATGAAATTA+GGG | - | chr7.4:87502394-87502413 | MS.gene97608:intron | 25.0% |
| ! | ATAATTTAGAAGCTAAGTTG+GGG | + | chr7.4:87501377-87501396 | None:intergenic | 25.0% |
| ! | ATTAATAAACAACCTCTTTC+AGG | + | chr7.4:87501990-87502009 | None:intergenic | 25.0% |
| ! | CAATTCAATTCAAGAAAAGT+TGG | - | chr7.4:87500971-87500990 | MS.gene97608:CDS | 25.0% |
| ! | TGTTGTACCATATAGAAATT+CGG | - | chr7.4:87501548-87501567 | MS.gene97608:CDS | 25.0% |
| !! | CTAATAGTCCTTTGTATTTT+GGG | - | chr7.4:87502171-87502190 | MS.gene97608:intron | 25.0% |
| !! | GTGATTTTAGATTCTTTGAT+GGG | - | chr7.4:87502351-87502370 | MS.gene97608:intron | 25.0% |
| !! | GTTTTTGATGAAGTAATGAA+GGG | - | chr7.4:87502257-87502276 | MS.gene97608:intron | 25.0% |
| !! | TAATAGTCCTTTGTATTTTG+GGG | - | chr7.4:87502172-87502191 | MS.gene97608:intron | 25.0% |
| !! | TCTAATAGTCCTTTGTATTT+TGG | - | chr7.4:87502170-87502189 | MS.gene97608:intron | 25.0% |
| !!! | TGTTTTTGATGAAGTAATGA+AGG | - | chr7.4:87502256-87502275 | MS.gene97608:intron | 25.0% |
| !!! | TTGTTGATGAGAAAATCTTT+TGG | + | chr7.4:87500954-87500973 | None:intergenic | 25.0% |
| AAAAACAACCCTTCTTCTAA+GGG | + | chr7.4:87502200-87502219 | None:intergenic | 30.0% | |
| ATCTTGATCATAGTGTAAGT+AGG | + | chr7.4:87501033-87501052 | None:intergenic | 30.0% | |
| ATGAAATTAGGGATGGTTAT+TGG | - | chr7.4:87502405-87502424 | MS.gene97608:intron | 30.0% | |
| GTAATGAAGGGTTTGTATTA+TGG | - | chr7.4:87502269-87502288 | MS.gene97608:intron | 30.0% | |
| TCTTTGATAGACATCAAAGA+TGG | + | chr7.4:87502113-87502132 | None:intergenic | 30.0% | |
| TTATGGTACTAAAGAAAGTG+TGG | - | chr7.4:87502286-87502305 | MS.gene97608:intron | 30.0% | |
| ! | AATCACAATTGGTGACAAAT+GGG | - | chr7.4:87501947-87501966 | MS.gene97608:intron | 30.0% |
| ! | GGTGATTTTAGATTCTTTGA+TGG | - | chr7.4:87502350-87502369 | MS.gene97608:intron | 30.0% |
| ! | GTGATCCTTCTTTTATCAAA+CGG | - | chr7.4:87502053-87502072 | MS.gene97608:intron | 30.0% |
| ! | TAATCACAATTGGTGACAAA+TGG | - | chr7.4:87501946-87501965 | MS.gene97608:intron | 30.0% |
| ! | TAATTTAGAAGCTAAGTTGG+GGG | + | chr7.4:87501376-87501395 | None:intergenic | 30.0% |
| ! | TATGGTACTAAAGAAAGTGT+GGG | - | chr7.4:87502287-87502306 | MS.gene97608:intron | 30.0% |
| ! | TTTTCACCATCTATAAGTCT+CGG | + | chr7.4:87501623-87501642 | None:intergenic | 30.0% |
| !! | AATAGTCCTTTGTATTTTGG+GGG | - | chr7.4:87502173-87502192 | MS.gene97608:intron | 30.0% |
| !!! | GAAATTCGGTTTTTTACCAT+TGG | - | chr7.4:87501562-87501581 | MS.gene97608:CDS | 30.0% |
| !!! | TGAGAAAATCTTTTGGAGTA+AGG | + | chr7.4:87500947-87500966 | None:intergenic | 30.0% |
| AGTACCCATTACATCAAATG+CGG | + | chr7.4:87502147-87502166 | None:intergenic | 35.0% | |
| ATAGCAACAGAAAAGCTTGA+TGG | - | chr7.4:87502008-87502027 | MS.gene97608:intron | 35.0% | |
| ATCAACCGCATTTGATGTAA+TGG | - | chr7.4:87502139-87502158 | MS.gene97608:intron | 35.0% | |
| ATGCTGATATGTTCTCAAGA+TGG | - | chr7.4:87501197-87501216 | MS.gene97608:CDS | 35.0% | |
| CAAAAACAACCCTTCTTCTA+AGG | + | chr7.4:87502201-87502220 | None:intergenic | 35.0% | |
| GATCTTGGTGAAAGAACTAT+GGG | + | chr7.4:87500909-87500928 | None:intergenic | 35.0% | |
| GATGATGCTTATTGATCCAA+TGG | + | chr7.4:87501581-87501600 | None:intergenic | 35.0% | |
| TAGCAACAGAAAAGCTTGAT+GGG | - | chr7.4:87502009-87502028 | MS.gene97608:intron | 35.0% | |
| TATTGAGTATGATCCCTGAT+GGG | + | chr7.4:87502088-87502107 | None:intergenic | 35.0% | |
| TCAACCGCATTTGATGTAAT+GGG | - | chr7.4:87502140-87502159 | MS.gene97608:intron | 35.0% | |
| TGATCTTGGTGAAAGAACTA+TGG | + | chr7.4:87500910-87500929 | None:intergenic | 35.0% | |
| TTGAGAGATGAAATTAGGGA+TGG | - | chr7.4:87502398-87502417 | MS.gene97608:intron | 35.0% | |
| TTGTCACCAATTGTGATTAG+TGG | + | chr7.4:87501945-87501964 | None:intergenic | 35.0% | |
| ! | AGATTCTTTGATGGGTATTG+TGG | - | chr7.4:87502359-87502378 | MS.gene97608:intron | 35.0% |
| ! | ATCTTTTGTGATCAAACCAC+AGG | - | chr7.4:87501762-87501781 | MS.gene97608:intron | 35.0% |
| ! | GATTCTTTGATGGGTATTGT+GGG | - | chr7.4:87502360-87502379 | MS.gene97608:intron | 35.0% |
| ! | TAGTCCAAGTGTTGTTGATT+TGG | - | chr7.4:87502442-87502461 | MS.gene97608:CDS | 35.0% |
| !! | AGTCCAAGTGTTGTTGATTT+GGG | - | chr7.4:87502443-87502462 | MS.gene97608:CDS | 35.0% |
| !! | CTTAGAAGAAGGGTTGTTTT+TGG | - | chr7.4:87502199-87502218 | MS.gene97608:intron | 35.0% |
| !! | GGGTTTTAGTAATTGTTCTC+CGG | + | chr7.4:87501874-87501893 | None:intergenic | 35.0% |
| AGCAACAGAAAAGCTTGATG+GGG | - | chr7.4:87502010-87502029 | MS.gene97608:intron | 40.0% | |
| AGTCCAAAAGATGATGTGGT+GGG | - | chr7.4:87502224-87502243 | MS.gene97608:intron | 40.0% | |
| AGTCGCTGAAGAAAGGAATT+CGG | + | chr7.4:87501895-87501914 | None:intergenic | 40.0% | |
| CATCCACCACTAATCACAAT+TGG | - | chr7.4:87501936-87501955 | MS.gene97608:intron | 40.0% | |
| CTATTGAGTATGATCCCTGA+TGG | + | chr7.4:87502089-87502108 | None:intergenic | 40.0% | |
| TCACCAATTGTGATTAGTGG+TGG | + | chr7.4:87501942-87501961 | None:intergenic | 40.0% | |
| TGAAATGGTGAAGAGGAATG+TGG | - | chr7.4:87502319-87502338 | MS.gene97608:intron | 40.0% | |
| TGGGGAATGTTGGAATTGTT+GGG | - | chr7.4:87502462-87502481 | MS.gene97608:CDS | 40.0% | |
| TTCCCCAAATCAACAACACT+TGG | + | chr7.4:87502449-87502468 | None:intergenic | 40.0% | |
| TTGGGCCGTTTGATAAAAGA+AGG | + | chr7.4:87502061-87502080 | None:intergenic | 40.0% | |
| TTGGGGAATGTTGGAATTGT+TGG | - | chr7.4:87502461-87502480 | MS.gene97608:CDS | 40.0% | |
| ! | CTTTTATCAAACGGCCCAAT+AGG | - | chr7.4:87502062-87502081 | MS.gene97608:intron | 40.0% |
| ! | GGTTCACATTTTCGAACGAA+CGG | - | chr7.4:87502031-87502050 | MS.gene97608:intron | 40.0% |
| ! | TTTCCCACCACATCATCTTT+TGG | + | chr7.4:87502230-87502249 | None:intergenic | 40.0% |
| !! | GTCCAAGTGTTGTTGATTTG+GGG | - | chr7.4:87502444-87502463 | MS.gene97608:CDS | 40.0% |
| !! | GTTGTTGATTTGGGGAATGT+TGG | - | chr7.4:87502452-87502471 | MS.gene97608:CDS | 40.0% |
| AACAACCTCTTTCAGGCTCA+TGG | + | chr7.4:87501983-87502002 | None:intergenic | 45.0% | |
| AACCAACCCTTAACACCGAT+TGG | - | chr7.4:87501823-87501842 | MS.gene97608:intron | 45.0% | |
| AAGAGGAATGTGGTTGAGGT+TGG | - | chr7.4:87502329-87502348 | MS.gene97608:intron | 45.0% | |
| AAGGGTCCCCCAAAATACAA+AGG | + | chr7.4:87502182-87502201 | None:intergenic | 45.0% | |
| ATCTTTCCGTGCAAAACTGG+TGG | - | chr7.4:87501848-87501867 | MS.gene97608:intron | 45.0% | |
| ATGTTGGAATTGTTGGGCTC+TGG | - | chr7.4:87502468-87502487 | MS.gene97608:CDS | 45.0% | |
| CATGTCATCATCATCACCAC+CGG | - | chr7.4:87501791-87501810 | MS.gene97608:intron | 45.0% | |
| GAGTCCAAAAGATGATGTGG+TGG | - | chr7.4:87502223-87502242 | MS.gene97608:intron | 45.0% | |
| GGATGATTCACAACAGTGTC+TGG | + | chr7.4:87501921-87501940 | None:intergenic | 45.0% | |
| GGTGAGTCCAAAAGATGATG+TGG | - | chr7.4:87502220-87502239 | MS.gene97608:intron | 45.0% | |
| GTAATCCATGAGCCTGAAAG+AGG | - | chr7.4:87501975-87501994 | MS.gene97608:intron | 45.0% | |
| GTCGCTGAAGAAAGGAATTC+GGG | + | chr7.4:87501894-87501913 | None:intergenic | 45.0% | |
| TCAACGCCGAGACTTATAGA+TGG | - | chr7.4:87501614-87501633 | MS.gene97608:CDS | 45.0% | |
| TCTTTCACCAAGATCAGAGC+TGG | - | chr7.4:87500914-87500933 | MS.gene97608:CDS | 45.0% | |
| TGATGACATGTTGCAACCTG+TGG | + | chr7.4:87501781-87501800 | None:intergenic | 45.0% | |
| TGTTGGAATTGTTGGGCTCT+GGG | - | chr7.4:87502469-87502488 | MS.gene97608:CDS | 45.0% | |
| TTGCTGCTGAAATGGTGAAG+AGG | - | chr7.4:87502312-87502331 | MS.gene97608:intron | 45.0% | |
| ! | CTTTGATGGGTATTGTGGGT+GGG | - | chr7.4:87502364-87502383 | MS.gene97608:intron | 45.0% |
| ! | GATGATGTGGTGGGAAAAAG+TGG | - | chr7.4:87502233-87502252 | MS.gene97608:intron | 45.0% |
| ! | TAGAGATCCAGCTCTGATCT+TGG | + | chr7.4:87500924-87500943 | None:intergenic | 45.0% |
| ! | TCTTTGATGGGTATTGTGGG+TGG | - | chr7.4:87502363-87502382 | MS.gene97608:intron | 45.0% |
| !! | AAGATCGCCAATCGGTGTTA+AGG | + | chr7.4:87501833-87501852 | None:intergenic | 45.0% |
| !! | AGATCGCCAATCGGTGTTAA+GGG | + | chr7.4:87501832-87501851 | None:intergenic | 45.0% |
| !! | AGGGTTGGTTTGTCATCATC+CGG | + | chr7.4:87501813-87501832 | None:intergenic | 45.0% |
| CTGGATCAGTCGCTGAAGAA+AGG | + | chr7.4:87501902-87501921 | None:intergenic | 50.0% | |
| GACGAAGTTCTCGGGCTTAT+GGG | - | chr7.4:87502491-87502510 | MS.gene97608:CDS | 50.0% | |
| GCGATCTTTCCGTGCAAAAC+TGG | - | chr7.4:87501845-87501864 | MS.gene97608:intron | 50.0% | |
| GGTGAAGAGGAATGTGGTTG+AGG | - | chr7.4:87502325-87502344 | MS.gene97608:intron | 50.0% | |
| TGCACGGAAAGATCGCCAAT+CGG | + | chr7.4:87501841-87501860 | None:intergenic | 50.0% | |
| TGTGGGTCTTGCTGCTGAAA+TGG | - | chr7.4:87502304-87502323 | MS.gene97608:intron | 50.0% | |
| TTCTCGGGCTTATGGGCAAA+AGG | - | chr7.4:87502498-87502517 | MS.gene97608:CDS | 50.0% | |
| TTGGGGGACCCTTAGAAGAA+GGG | - | chr7.4:87502189-87502208 | MS.gene97608:intron | 50.0% | |
| TTTGGGGGACCCTTAGAAGA+AGG | - | chr7.4:87502188-87502207 | MS.gene97608:intron | 50.0% | |
| ! | ATGATCCCTGATGGGCCTAT+TGG | + | chr7.4:87502080-87502099 | None:intergenic | 50.0% |
| ! | TGATCCCTGATGGGCCTATT+GGG | + | chr7.4:87502079-87502098 | None:intergenic | 50.0% |
| !! | GTTGGTTTGTCATCATCCGG+TGG | + | chr7.4:87501810-87501829 | None:intergenic | 50.0% |
| CGGGCTTATGGGCAAAAGGA+AGG | - | chr7.4:87502502-87502521 | MS.gene97608:CDS | 55.0% | |
| GGACGAAGTTCTCGGGCTTA+TGG | - | chr7.4:87502490-87502509 | MS.gene97608:CDS | 55.0% | |
| TTCCGTGCAAAACTGGTGGC+CGG | - | chr7.4:87501852-87501871 | MS.gene97608:intron | 55.0% | |
| !! | CGCCAATCGGTGTTAAGGGT+TGG | + | chr7.4:87501828-87501847 | None:intergenic | 55.0% |
| AACGGCCCAATAGGCCCATC+AGG | - | chr7.4:87502071-87502090 | MS.gene97608:intron | 60.0% | |
| ACGGCCCAATAGGCCCATCA+GGG | - | chr7.4:87502072-87502091 | MS.gene97608:intron | 60.0% | |
| ! | CTCCGGCCACCAGTTTTGCA+CGG | + | chr7.4:87501857-87501876 | None:intergenic | 60.0% |
| !! | GGCTCTGGGACGAAGTTCTC+GGG | - | chr7.4:87502483-87502502 | MS.gene97608:CDS | 60.0% |
| !! | GGGCTCTGGGACGAAGTTCT+CGG | - | chr7.4:87502482-87502501 | MS.gene97608:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 87500887 | 87502532 | 87500887 | ID=MS.gene97608 |
| chr7.4 | mRNA | 87500887 | 87502532 | 87500887 | ID=MS.gene97608.t1;Parent=MS.gene97608 |
| chr7.4 | exon | 87502406 | 87502532 | 87502406 | ID=MS.gene97608.t1.exon1;Parent=MS.gene97608.t1 |
| chr7.4 | CDS | 87502406 | 87502532 | 87502406 | ID=cds.MS.gene97608.t1;Parent=MS.gene97608.t1 |
| chr7.4 | exon | 87500887 | 87501635 | 87500887 | ID=MS.gene97608.t1.exon2;Parent=MS.gene97608.t1 |
| chr7.4 | CDS | 87500887 | 87501635 | 87500887 | ID=cds.MS.gene97608.t1;Parent=MS.gene97608.t1 |
| Gene Sequence |
| Protein sequence |
