Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45220.t1 | XP_003621320.1 | 98.3 | 291 | 5 | 0 | 1 | 291 | 1 | 291 | 1.00E-166 | 595.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45220.t1 | B3QMC9 | 33.6 | 152 | 87 | 7 | 114 | 263 | 11 | 150 | 2.9e-13 | 77.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45220.t1 | G7L348 | 98.3 | 291 | 5 | 0 | 1 | 291 | 1 | 291 | 7.3e-167 | 595.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene45220 | 0.809769 | 1.61E-50 | -1.69E-46 |
| MS.gene051471 | MS.gene45220 | 0.80981 | 1.57E-50 | -1.69E-46 |
| MS.gene051663 | MS.gene45220 | 0.808809 | 2.58E-50 | -1.69E-46 |
| MS.gene053073 | MS.gene45220 | 0.832041 | 1.19E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene45220 | 0.818104 | 2.33E-52 | -1.69E-46 |
| MS.gene053907 | MS.gene45220 | 0.8078 | 4.23E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene45220 | 0.800207 | 1.61E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene45220 | 0.832602 | 8.61E-56 | -1.69E-46 |
| MS.gene055428 | MS.gene45220 | 0.8001 | 1.69E-48 | -1.69E-46 |
| MS.gene055712 | MS.gene45220 | 0.824182 | 9.27E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene45220 | 0.820604 | 6.28E-53 | -1.69E-46 |
| MS.gene057554 | MS.gene45220 | 0.859731 | 3.38E-63 | -1.69E-46 |
| MS.gene059894 | MS.gene45220 | 0.837055 | 6.51E-57 | -1.69E-46 |
| MS.gene059899 | MS.gene45220 | 0.81585 | 7.48E-52 | -1.69E-46 |
| MS.gene060407 | MS.gene45220 | 0.807582 | 4.71E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene45220 | 0.803494 | 3.39E-49 | -1.69E-46 |
| MS.gene061112 | MS.gene45220 | 0.832108 | 1.14E-55 | -1.69E-46 |
| MS.gene061113 | MS.gene45220 | 0.806112 | 9.63E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene45220 | 0.83227 | 1.04E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45220.t1 | MTR_7g011850 | 98.282 | 291 | 5 | 0 | 1 | 291 | 1 | 291 | 0.0 | 592 |
| MS.gene45220.t1 | MTR_3g005140 | 44.939 | 247 | 121 | 7 | 49 | 288 | 83 | 321 | 1.80e-57 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45220.t1 | AT3G29240 | 61.093 | 311 | 95 | 7 | 1 | 286 | 1 | 310 | 6.76e-121 | 349 |
| MS.gene45220.t1 | AT3G29240 | 61.093 | 311 | 95 | 7 | 1 | 286 | 1 | 310 | 6.76e-121 | 349 |
| MS.gene45220.t1 | AT1G33780 | 46.552 | 232 | 105 | 4 | 59 | 286 | 95 | 311 | 1.81e-56 | 185 |
| MS.gene45220.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 903 | 1048 | 5.04e-12 | 66.6 |
| MS.gene45220.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 904 | 1049 | 5.18e-12 | 66.6 |
| MS.gene45220.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 712 | 857 | 5.56e-12 | 66.6 |
| MS.gene45220.t1 | AT3G19780 | 32.258 | 155 | 87 | 5 | 114 | 259 | 694 | 839 | 6.40e-12 | 66.2 |
Find 80 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATAGTCCTTTGTATTT+TGG | 0.063786 | 7.3:-85962659 | MS.gene45220:CDS |
| ATTAATAAACAACCTCTTTC+AGG | 0.170100 | 7.3:+85962842 | None:intergenic |
| AACAATTGAGAGATGAAATT+AGG | 0.215233 | 7.3:-85962436 | MS.gene45220:CDS |
| GTAATGAAGGGTTTGTATTA+TGG | 0.269355 | 7.3:-85962560 | MS.gene45220:CDS |
| ATGTTGGAATTGTTGGGCTC+TGG | 0.270864 | 7.3:-85962361 | MS.gene45220:CDS |
| TTGGGGAATGTTGGAATTGT+TGG | 0.278049 | 7.3:-85962368 | MS.gene45220:CDS |
| ATGAAATTAGGGATGGTTAT+TGG | 0.278275 | 7.3:-85962424 | MS.gene45220:CDS |
| GGACGAAGTTCTCGGGCTTA+TGG | 0.278397 | 7.3:-85962339 | MS.gene45220:CDS |
| TTTCCCACCACATCATCTTT+TGG | 0.289279 | 7.3:+85962602 | None:intergenic |
| ACAATTGAGAGATGAAATTA+GGG | 0.325075 | 7.3:-85962435 | MS.gene45220:CDS |
| AGTCCAAGTGTTGTTGATTT+GGG | 0.333914 | 7.3:-85962386 | MS.gene45220:CDS |
| ATGATCCCTGATGGGCCTAT+TGG | 0.337536 | 7.3:+85962752 | None:intergenic |
| AAGATCGCCAATCGGTGTTA+AGG | 0.343777 | 7.3:+85962999 | None:intergenic |
| TAGTCCAAGTGTTGTTGATT+TGG | 0.347343 | 7.3:-85962387 | MS.gene45220:CDS |
| TGATCTTGGTGAAAGAACTA+TGG | 0.347700 | 7.3:+85963913 | None:intergenic |
| TGGGGAATGTTGGAATTGTT+GGG | 0.353274 | 7.3:-85962367 | MS.gene45220:CDS |
| GGGCTCTGGGACGAAGTTCT+CGG | 0.353820 | 7.3:-85962347 | MS.gene45220:CDS |
| GACGAAGTTCTCGGGCTTAT+GGG | 0.359750 | 7.3:-85962338 | MS.gene45220:CDS |
| TAATCACAATTGGTGACAAA+TGG | 0.368700 | 7.3:-85962883 | MS.gene45220:CDS |
| ATCAACCGCATTTGATGTAA+TGG | 0.381650 | 7.3:-85962690 | MS.gene45220:CDS |
| AGTCGCTGAAGAAAGGAATT+CGG | 0.391351 | 7.3:+85962937 | None:intergenic |
| GTCGCTGAAGAAAGGAATTC+GGG | 0.401772 | 7.3:+85962938 | None:intergenic |
| AACGGCCCAATAGGCCCATC+AGG | 0.402546 | 7.3:-85962758 | MS.gene45220:CDS |
| GCGATCTTTCCGTGCAAAAC+TGG | 0.403195 | 7.3:-85962984 | MS.gene45220:CDS |
| TGATCCCTGATGGGCCTATT+GGG | 0.409481 | 7.3:+85962753 | None:intergenic |
| ATCTTACATGATACATGAAA+TGG | 0.417300 | 7.3:+85963822 | None:intergenic |
| TGTTGGAATTGTTGGGCTCT+GGG | 0.418680 | 7.3:-85962360 | MS.gene45220:CDS |
| CTTTGATGGGTATTGTGGGT+GGG | 0.424635 | 7.3:-85962465 | MS.gene45220:CDS |
| CAATTCAATTCAAGAAAAGT+TGG | 0.426906 | 7.3:-85963849 | MS.gene45220:CDS |
| AACAACCTCTTTCAGGCTCA+TGG | 0.428547 | 7.3:+85962849 | None:intergenic |
| GGCTCTGGGACGAAGTTCTC+GGG | 0.430974 | 7.3:-85962346 | MS.gene45220:CDS |
| TTGTTGATGAGAAAATCTTT+TGG | 0.440379 | 7.3:+85963869 | None:intergenic |
| AGATTCTTTGATGGGTATTG+TGG | 0.441919 | 7.3:-85962470 | MS.gene45220:CDS |
| TGTGGGTCTTGCTGCTGAAA+TGG | 0.442545 | 7.3:-85962525 | MS.gene45220:CDS |
| TTGTCACCAATTGTGATTAG+TGG | 0.444671 | 7.3:+85962887 | None:intergenic |
| GGATGATTCACAACAGTGTC+TGG | 0.452781 | 7.3:+85962911 | None:intergenic |
| GATTCTTTGATGGGTATTGT+GGG | 0.454997 | 7.3:-85962469 | MS.gene45220:CDS |
| AGATCGCCAATCGGTGTTAA+GGG | 0.458925 | 7.3:+85963000 | None:intergenic |
| CATCCACCACTAATCACAAT+TGG | 0.467643 | 7.3:-85962893 | MS.gene45220:CDS |
| CGCCAATCGGTGTTAAGGGT+TGG | 0.469028 | 7.3:+85963004 | None:intergenic |
| TCAACCGCATTTGATGTAAT+GGG | 0.481955 | 7.3:-85962689 | MS.gene45220:CDS |
| TCTTTGATGGGTATTGTGGG+TGG | 0.484182 | 7.3:-85962466 | MS.gene45220:CDS |
| GTTGTTGATTTGGGGAATGT+TGG | 0.484466 | 7.3:-85962377 | MS.gene45220:CDS |
| TAGAGATCCAGCTCTGATCT+TGG | 0.485876 | 7.3:+85963899 | None:intergenic |
| TTGGGCCGTTTGATAAAAGA+AGG | 0.489401 | 7.3:+85962771 | None:intergenic |
| AATCACAATTGGTGACAAAT+GGG | 0.489815 | 7.3:-85962882 | MS.gene45220:CDS |
| TCTTTCACCAAGATCAGAGC+TGG | 0.498810 | 7.3:-85963906 | MS.gene45220:CDS |
| TAGCAACAGAAAAGCTTGAT+GGG | 0.501175 | 7.3:-85962820 | MS.gene45220:CDS |
| CTGGATCAGTCGCTGAAGAA+AGG | 0.501880 | 7.3:+85962930 | None:intergenic |
| ATAGCAACAGAAAAGCTTGA+TGG | 0.509500 | 7.3:-85962821 | MS.gene45220:CDS |
| TTCTCGGGCTTATGGGCAAA+AGG | 0.513225 | 7.3:-85962331 | MS.gene45220:CDS |
| TGCACGGAAAGATCGCCAAT+CGG | 0.515533 | 7.3:+85962991 | None:intergenic |
| TCTTTGATAGACATCAAAGA+TGG | 0.519470 | 7.3:+85962719 | None:intergenic |
| AACCAACCCTTAACACCGAT+TGG | 0.525116 | 7.3:-85963006 | MS.gene45220:CDS |
| AAGAGGAATGTGGTTGAGGT+TGG | 0.527418 | 7.3:-85962500 | MS.gene45220:CDS |
| TTCCCCAAATCAACAACACT+TGG | 0.527843 | 7.3:+85962383 | None:intergenic |
| GATCTTGGTGAAAGAACTAT+GGG | 0.534324 | 7.3:+85963914 | None:intergenic |
| TTCCGTGCAAAACTGGTGGC+CGG | 0.536600 | 7.3:-85962977 | MS.gene45220:CDS |
| GGTGAAGAGGAATGTGGTTG+AGG | 0.554685 | 7.3:-85962504 | MS.gene45220:CDS |
| TCACCAATTGTGATTAGTGG+TGG | 0.561176 | 7.3:+85962890 | None:intergenic |
| CTATTGAGTATGATCCCTGA+TGG | 0.565216 | 7.3:+85962743 | None:intergenic |
| ATCTTTCCGTGCAAAACTGG+TGG | 0.565955 | 7.3:-85962981 | MS.gene45220:CDS |
| GTAATCCATGAGCCTGAAAG+AGG | 0.568190 | 7.3:-85962854 | MS.gene45220:CDS |
| CGGGCTTATGGGCAAAAGGA+AGG | 0.575753 | 7.3:-85962327 | MS.gene45220:CDS |
| TATTGAGTATGATCCCTGAT+GGG | 0.580509 | 7.3:+85962744 | None:intergenic |
| TTGAGAGATGAAATTAGGGA+TGG | 0.595243 | 7.3:-85962431 | MS.gene45220:CDS |
| TTATGGTACTAAAGAAAGTG+TGG | 0.602423 | 7.3:-85962543 | MS.gene45220:CDS |
| TTGCTGCTGAAATGGTGAAG+AGG | 0.609923 | 7.3:-85962517 | MS.gene45220:CDS |
| GTCCAAGTGTTGTTGATTTG+GGG | 0.620298 | 7.3:-85962385 | MS.gene45220:CDS |
| GTTGGTTTGTCATCATCCGA+CGG | 0.627755 | 7.3:+85963022 | None:intergenic |
| CATGTCATCATCATCACCGT+CGG | 0.628332 | 7.3:-85963038 | MS.gene45220:CDS |
| TATGGTACTAAAGAAAGTGT+GGG | 0.628740 | 7.3:-85962542 | MS.gene45220:CDS |
| ACGGCCCAATAGGCCCATCA+GGG | 0.647590 | 7.3:-85962757 | MS.gene45220:CDS |
| AGCAACAGAAAAGCTTGATG+GGG | 0.650228 | 7.3:-85962819 | MS.gene45220:CDS |
| GGTGAGTCCAAAAGATGATG+TGG | 0.665219 | 7.3:-85962609 | MS.gene45220:CDS |
| GAGTCCAAAAGATGATGTGG+TGG | 0.665713 | 7.3:-85962606 | MS.gene45220:CDS |
| AGTACCCATTACATCAAATG+CGG | 0.679472 | 7.3:+85962685 | None:intergenic |
| GGCAAAAGGAAGGTCAAGTG+AGG | 0.692062 | 7.3:-85962317 | None:intergenic |
| AGTCCAAAAGATGATGTGGT+GGG | 0.719657 | 7.3:-85962605 | MS.gene45220:CDS |
| TGAAATGGTGAAGAGGAATG+TGG | 0.729338 | 7.3:-85962510 | MS.gene45220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAAAATATGTGAATT+TGG | - | chr7.3:85962851-85962870 | MS.gene45220:CDS | 10.0% |
| !!! | ATATTGATAATGATACTTTA+GGG | - | chr7.3:85962897-85962916 | MS.gene45220:CDS | 15.0% |
| !!! | TATATTGATAATGATACTTT+AGG | - | chr7.3:85962896-85962915 | MS.gene45220:CDS | 15.0% |
| !! | ATATAATTTAGAAGCTAAGT+TGG | + | chr7.3:85962811-85962830 | None:intergenic | 20.0% |
| !! | TAAAAAACCGAATTTCTATA+TGG | + | chr7.3:85962981-85963000 | None:intergenic | 20.0% |
| !! | TATAATTTAGAAGCTAAGTT+GGG | + | chr7.3:85962810-85962829 | None:intergenic | 20.0% |
| !!! | ATTATATTGATTGTACATTC+AGG | - | chr7.3:85962920-85962939 | MS.gene45220:CDS | 20.0% |
| ! | AAACAATTGTAGTGAAATAG+AGG | - | chr7.3:85962555-85962574 | MS.gene45220:CDS | 25.0% |
| ! | AACAATTGAGAGATGAAATT+AGG | - | chr7.3:85963816-85963835 | MS.gene45220:intron | 25.0% |
| ! | ACAATTGAGAGATGAAATTA+GGG | - | chr7.3:85963817-85963836 | MS.gene45220:intron | 25.0% |
| ! | ATAATTTAGAAGCTAAGTTG+GGG | + | chr7.3:85962809-85962828 | None:intergenic | 25.0% |
| ! | ATCTTACATGATACATGAAA+TGG | + | chr7.3:85962433-85962452 | None:intergenic | 25.0% |
| ! | ATCTTGATCTTAGTATAAGT+AGG | + | chr7.3:85962465-85962484 | None:intergenic | 25.0% |
| ! | ATTAATAAACAACCTCTTTC+AGG | + | chr7.3:85963413-85963432 | None:intergenic | 25.0% |
| ! | CAATTCAATTCAAGAAAAGT+TGG | - | chr7.3:85962403-85962422 | MS.gene45220:CDS | 25.0% |
| ! | TGTTGTACCATATAGAAATT+CGG | - | chr7.3:85962971-85962990 | MS.gene45220:CDS | 25.0% |
| !! | CTAATAGTCCTTTGTATTTT+GGG | - | chr7.3:85963594-85963613 | MS.gene45220:intron | 25.0% |
| !! | GTGATTTTAGATTCTTTGAT+GGG | - | chr7.3:85963774-85963793 | MS.gene45220:intron | 25.0% |
| !! | GTTTTTGATGAAGTAATGAA+GGG | - | chr7.3:85963680-85963699 | MS.gene45220:intron | 25.0% |
| !! | TAATAGTCCTTTGTATTTTG+GGG | - | chr7.3:85963595-85963614 | MS.gene45220:intron | 25.0% |
| !! | TCTAATAGTCCTTTGTATTT+TGG | - | chr7.3:85963593-85963612 | MS.gene45220:intron | 25.0% |
| !!! | TGTTTTTGATGAAGTAATGA+AGG | - | chr7.3:85963679-85963698 | MS.gene45220:intron | 25.0% |
| !!! | TTGTTGATGAGAAAATCTTT+TGG | + | chr7.3:85962386-85962405 | None:intergenic | 25.0% |
| AAAAACAACCCTTCTTCTAA+GGG | + | chr7.3:85963623-85963642 | None:intergenic | 30.0% | |
| ATGAAATTAGGGATGGTTAT+TGG | - | chr7.3:85963828-85963847 | MS.gene45220:intron | 30.0% | |
| GATGATACTTATTGATCCAA+TGG | + | chr7.3:85963004-85963023 | None:intergenic | 30.0% | |
| GTAATGAAGGGTTTGTATTA+TGG | - | chr7.3:85963692-85963711 | MS.gene45220:intron | 30.0% | |
| TCTTTGATAGACATCAAAGA+TGG | + | chr7.3:85963536-85963555 | None:intergenic | 30.0% | |
| TTAGTATAAGTAGGAGAAAG+AGG | + | chr7.3:85962456-85962475 | None:intergenic | 30.0% | |
| TTATGGTACTAAAGAAAGTG+TGG | - | chr7.3:85963709-85963728 | MS.gene45220:intron | 30.0% | |
| ! | AATCACAATTGGTGACAAAT+GGG | - | chr7.3:85963370-85963389 | MS.gene45220:intron | 30.0% |
| ! | GGTGATTTTAGATTCTTTGA+TGG | - | chr7.3:85963773-85963792 | MS.gene45220:intron | 30.0% |
| ! | GTGATCCTTCTTTTATCAAA+CGG | - | chr7.3:85963476-85963495 | MS.gene45220:intron | 30.0% |
| ! | TAATCACAATTGGTGACAAA+TGG | - | chr7.3:85963369-85963388 | MS.gene45220:intron | 30.0% |
| ! | TAATTTAGAAGCTAAGTTGG+GGG | + | chr7.3:85962808-85962827 | None:intergenic | 30.0% |
| ! | TATGGTACTAAAGAAAGTGT+GGG | - | chr7.3:85963710-85963729 | MS.gene45220:intron | 30.0% |
| ! | TTTTCACCATCTATAAGTCT+CGG | + | chr7.3:85963046-85963065 | None:intergenic | 30.0% |
| !! | AATAGTCCTTTGTATTTTGG+GGG | - | chr7.3:85963596-85963615 | MS.gene45220:intron | 30.0% |
| !!! | GAAATTCGGTTTTTTACCAT+TGG | - | chr7.3:85962985-85963004 | MS.gene45220:CDS | 30.0% |
| !!! | TGAGAAAATCTTTTGGAGTA+AGG | + | chr7.3:85962379-85962398 | None:intergenic | 30.0% |
| AGTACCCATTACATCAAATG+CGG | + | chr7.3:85963570-85963589 | None:intergenic | 35.0% | |
| ATAGCAACAGAAAAGCTTGA+TGG | - | chr7.3:85963431-85963450 | MS.gene45220:intron | 35.0% | |
| ATCAACCGCATTTGATGTAA+TGG | - | chr7.3:85963562-85963581 | MS.gene45220:intron | 35.0% | |
| ATGCTGATATGTTCTCAAGA+TGG | - | chr7.3:85962629-85962648 | MS.gene45220:CDS | 35.0% | |
| CAAAAACAACCCTTCTTCTA+AGG | + | chr7.3:85963624-85963643 | None:intergenic | 35.0% | |
| GATCTTGGTGAAAGAACTAT+GGG | + | chr7.3:85962341-85962360 | None:intergenic | 35.0% | |
| TAGCAACAGAAAAGCTTGAT+GGG | - | chr7.3:85963432-85963451 | MS.gene45220:intron | 35.0% | |
| TATTGAGTATGATCCCTGAT+GGG | + | chr7.3:85963511-85963530 | None:intergenic | 35.0% | |
| TCAACCGCATTTGATGTAAT+GGG | - | chr7.3:85963563-85963582 | MS.gene45220:intron | 35.0% | |
| TGATCTTGGTGAAAGAACTA+TGG | + | chr7.3:85962342-85962361 | None:intergenic | 35.0% | |
| TTGAGAGATGAAATTAGGGA+TGG | - | chr7.3:85963821-85963840 | MS.gene45220:intron | 35.0% | |
| TTGTCACCAATTGTGATTAG+TGG | + | chr7.3:85963368-85963387 | None:intergenic | 35.0% | |
| ! | AGATTCTTTGATGGGTATTG+TGG | - | chr7.3:85963782-85963801 | MS.gene45220:intron | 35.0% |
| ! | ATCTTTTGTGATCAAACGAC+AGG | - | chr7.3:85963185-85963204 | MS.gene45220:intron | 35.0% |
| ! | GATTCTTTGATGGGTATTGT+GGG | - | chr7.3:85963783-85963802 | MS.gene45220:intron | 35.0% |
| ! | TAGTCCAAGTGTTGTTGATT+TGG | - | chr7.3:85963865-85963884 | MS.gene45220:CDS | 35.0% |
| !! | AGTCCAAGTGTTGTTGATTT+GGG | - | chr7.3:85963866-85963885 | MS.gene45220:CDS | 35.0% |
| !! | CTTAGAAGAAGGGTTGTTTT+TGG | - | chr7.3:85963622-85963641 | MS.gene45220:intron | 35.0% |
| !! | GGGTTTTAGTAATTGTTCTC+CGG | + | chr7.3:85963297-85963316 | None:intergenic | 35.0% |
| AGCAACAGAAAAGCTTGATG+GGG | - | chr7.3:85963433-85963452 | MS.gene45220:intron | 40.0% | |
| AGTCCAAAAGATGATGTGGT+GGG | - | chr7.3:85963647-85963666 | MS.gene45220:intron | 40.0% | |
| AGTCGCTGAAGAAAGGAATT+CGG | + | chr7.3:85963318-85963337 | None:intergenic | 40.0% | |
| CATCCACCACTAATCACAAT+TGG | - | chr7.3:85963359-85963378 | MS.gene45220:intron | 40.0% | |
| CTATTGAGTATGATCCCTGA+TGG | + | chr7.3:85963512-85963531 | None:intergenic | 40.0% | |
| TCAATGCCGAGACTTATAGA+TGG | - | chr7.3:85963037-85963056 | MS.gene45220:CDS | 40.0% | |
| TCACCAATTGTGATTAGTGG+TGG | + | chr7.3:85963365-85963384 | None:intergenic | 40.0% | |
| TGAAATGGTGAAGAGGAATG+TGG | - | chr7.3:85963742-85963761 | MS.gene45220:intron | 40.0% | |
| TGGGGAATGTTGGAATTGTT+GGG | - | chr7.3:85963885-85963904 | MS.gene45220:CDS | 40.0% | |
| TTCCCCAAATCAACAACACT+TGG | + | chr7.3:85963872-85963891 | None:intergenic | 40.0% | |
| TTGGGCCGTTTGATAAAAGA+AGG | + | chr7.3:85963484-85963503 | None:intergenic | 40.0% | |
| TTGGGGAATGTTGGAATTGT+TGG | - | chr7.3:85963884-85963903 | MS.gene45220:CDS | 40.0% | |
| ! | CTTTTATCAAACGGCCCAAT+AGG | - | chr7.3:85963485-85963504 | MS.gene45220:intron | 40.0% |
| ! | GGTTCACATTTTCGAACGAA+CGG | - | chr7.3:85963454-85963473 | MS.gene45220:intron | 40.0% |
| ! | TTTCCCACCACATCATCTTT+TGG | + | chr7.3:85963653-85963672 | None:intergenic | 40.0% |
| !! | GTCCAAGTGTTGTTGATTTG+GGG | - | chr7.3:85963867-85963886 | MS.gene45220:CDS | 40.0% |
| !! | GTTGTTGATTTGGGGAATGT+TGG | - | chr7.3:85963875-85963894 | MS.gene45220:CDS | 40.0% |
| AACAACCTCTTTCAGGCTCA+TGG | + | chr7.3:85963406-85963425 | None:intergenic | 45.0% | |
| AACCAACCCTTAACACCGAT+TGG | - | chr7.3:85963246-85963265 | MS.gene45220:intron | 45.0% | |
| AAGAGGAATGTGGTTGAGGT+TGG | - | chr7.3:85963752-85963771 | MS.gene45220:intron | 45.0% | |
| AAGGGTCCCCCAAAATACAA+AGG | + | chr7.3:85963605-85963624 | None:intergenic | 45.0% | |
| ATCTTTCCGTGCAAAACTGG+TGG | - | chr7.3:85963271-85963290 | MS.gene45220:intron | 45.0% | |
| ATGTTGGAATTGTTGGGCTC+TGG | - | chr7.3:85963891-85963910 | MS.gene45220:CDS | 45.0% | |
| CATGTCATCATCATCACCGT+CGG | - | chr7.3:85963214-85963233 | MS.gene45220:intron | 45.0% | |
| GAGTCCAAAAGATGATGTGG+TGG | - | chr7.3:85963646-85963665 | MS.gene45220:intron | 45.0% | |
| GGATGATTCACAACAGTGTC+TGG | + | chr7.3:85963344-85963363 | None:intergenic | 45.0% | |
| GGTGAGTCCAAAAGATGATG+TGG | - | chr7.3:85963643-85963662 | MS.gene45220:intron | 45.0% | |
| GTAATCCATGAGCCTGAAAG+AGG | - | chr7.3:85963398-85963417 | MS.gene45220:intron | 45.0% | |
| GTCGCTGAAGAAAGGAATTC+GGG | + | chr7.3:85963317-85963336 | None:intergenic | 45.0% | |
| TCTTTCACCAAGATCAGAGC+TGG | - | chr7.3:85962346-85962365 | MS.gene45220:CDS | 45.0% | |
| TGTTGGAATTGTTGGGCTCT+GGG | - | chr7.3:85963892-85963911 | MS.gene45220:CDS | 45.0% | |
| TTGCTGCTGAAATGGTGAAG+AGG | - | chr7.3:85963735-85963754 | MS.gene45220:intron | 45.0% | |
| ! | CTTTGATGGGTATTGTGGGT+GGG | - | chr7.3:85963787-85963806 | MS.gene45220:intron | 45.0% |
| ! | GATGATGTGGTGGGAAAAAG+TGG | - | chr7.3:85963656-85963675 | MS.gene45220:intron | 45.0% |
| ! | TAGAGATCCAGCTCTGATCT+TGG | + | chr7.3:85962356-85962375 | None:intergenic | 45.0% |
| ! | TCTTTGATGGGTATTGTGGG+TGG | - | chr7.3:85963786-85963805 | MS.gene45220:intron | 45.0% |
| !! | AAGATCGCCAATCGGTGTTA+AGG | + | chr7.3:85963256-85963275 | None:intergenic | 45.0% |
| !! | AGATCGCCAATCGGTGTTAA+GGG | + | chr7.3:85963255-85963274 | None:intergenic | 45.0% |
| !! | GTTGGTTTGTCATCATCCGA+CGG | + | chr7.3:85963233-85963252 | None:intergenic | 45.0% |
| CTGGATCAGTCGCTGAAGAA+AGG | + | chr7.3:85963325-85963344 | None:intergenic | 50.0% | |
| GACGAAGTTCTCGGGCTTAT+GGG | - | chr7.3:85963914-85963933 | MS.gene45220:CDS | 50.0% | |
| GCGATCTTTCCGTGCAAAAC+TGG | - | chr7.3:85963268-85963287 | MS.gene45220:intron | 50.0% | |
| GGTGAAGAGGAATGTGGTTG+AGG | - | chr7.3:85963748-85963767 | MS.gene45220:intron | 50.0% | |
| TGCACGGAAAGATCGCCAAT+CGG | + | chr7.3:85963264-85963283 | None:intergenic | 50.0% | |
| TGTGGGTCTTGCTGCTGAAA+TGG | - | chr7.3:85963727-85963746 | MS.gene45220:intron | 50.0% | |
| TTCTCGGGCTTATGGGCAAA+AGG | - | chr7.3:85963921-85963940 | MS.gene45220:CDS | 50.0% | |
| TTGGGGGACCCTTAGAAGAA+GGG | - | chr7.3:85963612-85963631 | MS.gene45220:intron | 50.0% | |
| TTTGGGGGACCCTTAGAAGA+AGG | - | chr7.3:85963611-85963630 | MS.gene45220:intron | 50.0% | |
| ! | ATGATCCCTGATGGGCCTAT+TGG | + | chr7.3:85963503-85963522 | None:intergenic | 50.0% |
| ! | TGATCCCTGATGGGCCTATT+GGG | + | chr7.3:85963502-85963521 | None:intergenic | 50.0% |
| CGGGCTTATGGGCAAAAGGA+AGG | - | chr7.3:85963925-85963944 | MS.gene45220:CDS | 55.0% | |
| GGACGAAGTTCTCGGGCTTA+TGG | - | chr7.3:85963913-85963932 | MS.gene45220:CDS | 55.0% | |
| TTCCGTGCAAAACTGGTGGC+CGG | - | chr7.3:85963275-85963294 | MS.gene45220:intron | 55.0% | |
| !! | CGCCAATCGGTGTTAAGGGT+TGG | + | chr7.3:85963251-85963270 | None:intergenic | 55.0% |
| AACGGCCCAATAGGCCCATC+AGG | - | chr7.3:85963494-85963513 | MS.gene45220:intron | 60.0% | |
| ACGGCCCAATAGGCCCATCA+GGG | - | chr7.3:85963495-85963514 | MS.gene45220:intron | 60.0% | |
| ! | CTCCGGCCACCAGTTTTGCA+CGG | + | chr7.3:85963280-85963299 | None:intergenic | 60.0% |
| !! | GGCTCTGGGACGAAGTTCTC+GGG | - | chr7.3:85963906-85963925 | MS.gene45220:CDS | 60.0% |
| !! | GGGCTCTGGGACGAAGTTCT+CGG | - | chr7.3:85963905-85963924 | MS.gene45220:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 85962319 | 85963955 | 85962319 | ID=MS.gene45220 |
| chr7.3 | mRNA | 85962319 | 85963955 | 85962319 | ID=MS.gene45220.t1;Parent=MS.gene45220 |
| chr7.3 | exon | 85963829 | 85963955 | 85963829 | ID=MS.gene45220.t1.exon1;Parent=MS.gene45220.t1 |
| chr7.3 | CDS | 85963829 | 85963955 | 85963829 | ID=cds.MS.gene45220.t1;Parent=MS.gene45220.t1 |
| chr7.3 | exon | 85962319 | 85963067 | 85962319 | ID=MS.gene45220.t1.exon2;Parent=MS.gene45220.t1 |
| chr7.3 | CDS | 85962319 | 85963067 | 85962319 | ID=cds.MS.gene45220.t1;Parent=MS.gene45220.t1 |
| Gene Sequence |
| Protein sequence |
